Pregenerated sensors for HNRNPH1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000007850Ensembl transcript IDs: ENSMUST00000069304.14, ENSMUST00000077817.8, ENSMUST00000109142.8
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | ATTGAGCCTTCTTTGAGCGACGCCAATGTTCACTTAAGAGCAGGCATAAAACCACCCGTACTCCTCCCCTaGAAGTCCACCGGCAATGTT | + |
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Preference number: 4 (lower is better) Translates to: IEPSLSDANVHLRAGIKPPVLLP*KSTGNV Trigger: AACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGG...TGGTTTTATGCCTGCTCTTAAGTGAACATTGGCGTCGCTCAAAGAAGGCTCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069304.14 ENSMUST00000077817.8 ENSMUST00000109142.8 |
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| CDS-3UTR GCA 90 bp | ATTGAGCCTTCTTTGAGCGACGCCAATGTTCACTTAAGAGCAGGCATAAAACCAGGTCATATCCGCTCATaGTGCTCTGGCCACCGTAAC | + |
|
Preference number: 4 (lower is better) Translates to: IEPSLSDANVHLRAGIKPGHIRS*CSGHRN Trigger: GTTACGGTGGCCAGAGCAGCATGAGCGGATATGACC...TGGTTTTATGCCTGCTCTTAAGTGAACATTGGCGTCGCTCAAAGAAGGCTCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069304.14 ENSMUST00000109142.8 |
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| CDS-3UTR TCA 90 bp | ATTGAGCCTTCTTTGAGCGACGCCAATGTTCACTTAAGAGCAGGCATAAAACCAGTAACTGGACTGGTTTaGCAAGCCCATGCCTCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: IEPSLSDANVHLRAGIKPVTGLV*QAHASH Trigger: ATGGGAGGCATGGGCTTGTCAAACCAGTCCAGTTAC...TGGTTTTATGCCTGCTCTTAAGTGAACATTGGCGTCGCTCAAAGAAGGCTCAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069304.14 ENSMUST00000077817.8 ENSMUST00000109142.8 |
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| CDS-3UTR GCA 90 bp | ATTGAGCCTTCTTTGAGCGACGCCAATGTTCACTTAAGAGCAGGCATAAAACCATACCATATCCGCTCATaGTGCTCTGGCCACCGTAAC | + |
|
Preference number: 4 (lower is better) Translates to: IEPSLSDANVHLRAGIKPYHIRS*CSGHRN Trigger: GTTACGGTGGCCAGAGCAGCATGAGCGGATATGGTA...TGGTTTTATGCCTGCTCTTAAGTGAACATTGGCGTCGCTCAAAGAAGGCTCAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077817.8 |
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| CDS-3UTR GCA 90 bp | AATGTTCACTTAAGAGCAGGCATAAAACCACAAGGCTGGATGGATTGCAAAATCCATATCCGCTCATGCTaGTCTGGCCACCGTAACCAC | + |
|
Preference number: 4 (lower is better) Translates to: NVHLRAGIKPQGWMDCKIHIRSC*SGHRNH Trigger: GTGGTTACGGTGGCCAGAGCAGCATGAGCGGATATG...GATTTTGCAATCCATCCAGCCTTGTGGTTTTATGCCTGCTCTTAAGTGAACATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069304.14 ENSMUST00000077817.8 ENSMUST00000109142.8 |
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| CDS-3UTR TCA 90 bp | AATGTTCACTTAAGAGCAGGCATAAAACCACAAGGCTGGATGGATTGCAAAATCGTAACTGGACTGGTTTaGCAAGCCCATGCCTCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: NVHLRAGIKPQGWMDCKIVTGLV*QAHASH Trigger: ATGGGAGGCATGGGCTTGTCAAACCAGTCCAGTTAC...GATTTTGCAATCCATCCAGCCTTGTGGTTTTATGCCTGCTCTTAAGTGAACATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069304.14 ENSMUST00000077817.8 ENSMUST00000109142.8 |
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| CDS-3UTR CCA 90 bp | ATTGAGCCTTCTTTGAGCGACGCCAATGTTCACTTAAGAGCAGGCATAAAACCAGGCCATAAGTTTTCGTaGTGGGTCATAATGAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: IEPSLSDANVHLRAGIKPGHKFS*WVIMSS Trigger: AGAACTCATTATGACCCACCACGAAAACTTATGGCC...TGGTTTTATGCCTGCTCTTAAGTGAACATTGGCGTCGCTCAAAGAAGGCTCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069304.14 ENSMUST00000077817.8 ENSMUST00000109142.8 |
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| CDS-3UTR CCA 90 bp | ATTGAGCCTTCTTTGAGCGACGCCAATGTTCACTTAAGAGCAGGCATAAAACCATTTTCCTGTAAAACTTaGTCATATCCGCTCATGCTG | + |
|
Preference number: 4 (lower is better) Translates to: IEPSLSDANVHLRAGIKPFSCKT*SYPLML Trigger: CAGCATGAGCGGATATGACCAAGTTTTACAGGAAAA...TGGTTTTATGCCTGCTCTTAAGTGAACATTGGCGTCGCTCAAAGAAGGCTCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000069304.14 ENSMUST00000109142.8 |
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| CDS-3UTR TCA 90 bp | ATTGAGCCTTCTTTGAGCGACGCCAATGTTCACTTAAGAGCAGGCATAAAACCAATTTGCTTTATCTTTTaGCATAGCTGCAACAGCATC | + |
|
Preference number: 4 (lower is better) Translates to: IEPSLSDANVHLRAGIKPICFIF*HSCNSI Trigger: GATGCTGTTGCAGCTATGTCAAAAGATAAAGCAAAT...TGGTTTTATGCCTGCTCTTAAGTGAACATTGGCGTCGCTCAAAGAAGGCTCAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069304.14 ENSMUST00000077817.8 ENSMUST00000109142.8 |
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| CDS-3UTR CCA 90 bp | ATTGAGCCTTCTTTGAGCGACGCCAATGTTCACTTAAGAGCAGGCATAAAACCACATAAGTTTTCGTGGTaGGTCATAATGAGTTCTAAC | + |
|
Preference number: 4 (lower is better) Translates to: IEPSLSDANVHLRAGIKPHKFSW*VIMSSN Trigger: GTTAGAACTCATTATGACCCACCACGAAAACTTATG...TGGTTTTATGCCTGCTCTTAAGTGAACATTGGCGTCGCTCAAAGAAGGCTCAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069304.14 ENSMUST00000077817.8 ENSMUST00000109142.8 |
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| CDS-3UTR CCA 90 bp | AATGTTCACTTAAGAGCAGGCATAAAACCACAAGGCTGGATGGATTGCAAAATCTTTTCCTGTAAAACTTaGTCATATCCGCTCATGCTG | + |
|
Preference number: 4 (lower is better) Translates to: NVHLRAGIKPQGWMDCKIFSCKT*SYPLML Trigger: CAGCATGAGCGGATATGACCAAGTTTTACAGGAAAA...GATTTTGCAATCCATCCAGCCTTGTGGTTTTATGCCTGCTCTTAAGTGAACATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000069304.14 ENSMUST00000109142.8 |
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| CDS-3UTR TCA 90 bp | AATGTTCACTTAAGAGCAGGCATAAAACCACAAGGCTGGATGGATTGCAAAATCATTTGCTTTATCTTTTaGCATAGCTGCAACAGCATC | + |
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Preference number: 4 (lower is better) Translates to: NVHLRAGIKPQGWMDCKIICFIF*HSCNSI Trigger: GATGCTGTTGCAGCTATGTCAAAAGATAAAGCAAAT...GATTTTGCAATCCATCCAGCCTTGTGGTTTTATGCCTGCTCTTAAGTGAACATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000069304.14 ENSMUST00000077817.8 ENSMUST00000109142.8 |
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| CDS-3UTR CAA 90 bp | ATTGAGCCTTCTTTGAGCGACGCCAATGTTCACTTAAGAGCAGGCATAAAACCACGTAACTGGACTGGTTaGACAAGCCCATGCCTCCCA | + |
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Preference number: 5 (lower is better) Translates to: IEPSLSDANVHLRAGIKPRNWTG*TSPCLP Trigger: TGGGAGGCATGGGCTTGTCAAACCAGTCCAGTTACG...TGGTTTTATGCCTGCTCTTAAGTGAACATTGGCGTCGCTCAAAGAAGGCTCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069304.14 ENSMUST00000077817.8 ENSMUST00000109142.8 |
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| CDS-3UTR CAA 90 bp | AATGTTCACTTAAGAGCAGGCATAAAACCACAAGGCTGGATGGATTGCAAAATCGCTGTTCACTGCTCCTaGGCTACCATATCCGCTCAT | + |
|
Preference number: 5 (lower is better) Translates to: NVHLRAGIKPQGWMDCKIAVHCS*ATISAH Trigger: ATGAGCGGATATGGTAGCCAAGGAGCAGTGAACAGC...GATTTTGCAATCCATCCAGCCTTGTGGTTTTATGCCTGCTCTTAAGTGAACATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077817.8 |
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