Pregenerated sensors for HNRNPF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042079Ensembl transcript IDs: ENSMUST00000035493.14, ENSMUST00000163168.9, ENSMUST00000167182.8, ENSMUST00000177570.2, ENSMUST00000180020.8, ENSMUST00000180341.2
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTGGCAGCCCTCTCATGTaGACGCAGTGGCCGGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: NSWCKVGPPASSRVINCSGSPLM*TQWPVV Trigger: CACCACCGGCCACTGCGTCCACATGAGAGGGCTGCC...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR GCA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTCAGCTGACACGCCCATaGCCTGCATCACCTGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: NSWCKVGPPASSRVINCSQLTRP*PASPGC Trigger: GCAGCCAGGTGATGCAGGGCATGGGCGTGTCAGCTG...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR TCA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTGTAGGCCACGGAGTTTaGCCACATAGCCTTCACCTC | + |
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Preference number: 4 (lower is better) Translates to: NSWCKVGPPASSRVINCSVGHGV*PHSLHL Trigger: GAGGTGAAGGCTATGTGGTCAAACTCCGTGGCCTAC...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR TCA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTTGGTGCTCTGCACTGTaGACTCGCTGTCTCCATATC | + |
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Preference number: 4 (lower is better) Translates to: NSWCKVGPPASSRVINCSWCSAL*TRCLHI Trigger: GATATGGAGACAGCGAGTTCACAGTGCAGAGCACCA...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR GCA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTCTGCCTGTTTCACAATaGCAATGTACCTCCGGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: NSWCKVGPPASSRVINCSLPVSQ*QCTSGL Trigger: CAGCCCGGAGGTACATTGGCATTGTGAAACAGGCAG...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR CCA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTACTGTCGGCGCTGTTTaGACCACTGTGCTTCAACAC | + |
|
Preference number: 4 (lower is better) Translates to: NSWCKVGPPASSRVINCSTVGAV*TTVLQH Trigger: GTGTTGAAGCACAGTGGTCCAAACAGCGCCGACAGT...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR CCA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTCTTTGTGCATCCAAATaGGAGTCCCCGAAGCCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: NSWCKVGPPASSRVINCSLCASK*ESPKPH Trigger: GTGAGGCTTCGGGGACTCCCATTTGGATGCACAAAG...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR CCA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTTCACAAAGCCATCATTaGCACTGTCGGCGCTGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: NSWCKVGPPASSRVINCSSQSHH*HCRRCL Trigger: CAAACAGCGCCGACAGTGCCAATGATGGCTTTGTGA...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR TCA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTCGGTTCTGTGTGACTTaGACACCTCAATATACCGGT | + |
|
Preference number: 4 (lower is better) Translates to: NSWCKVGPPASSRVINCSRFCVT*TPQYTG Trigger: ACCGGTATATTGAGGTGTTCAAGTCACACAGAACCG...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR TCA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTGAACTCTCACAGGGTTaGGTGGAGAGAAGAAGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: NSWCKVGPPASSRVINCSELSQG*VERRSC Trigger: ACAACTTCTTCTCTCCACTCAACCCTGTGAGAGTTC...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR GCA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTCCCCATCATGAATTGTaGAGTCGGAGAGGAAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: NSWCKVGPPASSRVINCSPHHEL*SRRGSF Trigger: AAAACTTCCTCTCCGACTGCACAATTCATGATGGGG...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR GCA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTAATGAAATGAACACCTaGGACCCCATCATGAATTGT | + |
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Preference number: 4 (lower is better) Translates to: NSWCKVGPPASSRVINCSNEMNT*DPIMNC Trigger: ACAATTCATGATGGGGTCGCAGGTGTTCATTTCATT...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS GCA 90 bp | CCCATAGCCTGCACTATAGGCACCAGACCTCATCCTATCCAGACCTaGCTGTTTCACAATGCCAATGTACCTCCGGGCTGTGCCAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: PIACTIGTRPHPIQT*LFHNANVPPGCARP Trigger: AGGCCTGGCACAGCCCGGAGGTACATTGGCATTGTGAAACAGGCAGGTCTGGATAGGATGAGGTCTGGTGCCTATAGTGCAGGCTATGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS GCA 90 bp | TATAGGCACCAGACCTCATCCTATCCAGACCTGCCTGTTTCACAATaGCAATGTACCTCCGGGCTGTGCCAGGCCTGTCATAAGGCCCAG | + |
|
Preference number: 5 (lower is better) Translates to: YRHQTSSYPDLPVSQ*QCTSGLCQACHKAQ Trigger: CTGGGCCTTATGACAGGCCTGGCACAGCCCGGAGGTACATTGGCATTGTGAAACAGGCAGGTCTGGATAGGATGAGGTCTGGTGCCTATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR CAA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTGCCTCCCCTGTAATCTaGCCTTCCGGGTCCACAGGT | + |
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Preference number: 5 (lower is better) Translates to: NSWCKVGPPASSRVINCSASPVI*PSGSTG Trigger: ACCTGTGGACCCGGAAGGCAAGATTACAGGGGAGGC...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS GCA 90 bp | ATAGCCATCACTGAGGCCACTGTATTCTTCATAGCCCCCATAGCCTaGACTATAGGCACCAGACCTCATCCTATCCAGACCTGCCTGTTT | + |
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Preference number: 5 (lower is better) Translates to: IAITEATVFFIAPIA*TIGTRPHPIQTCLF Trigger: AAACAGGCAGGTCTGGATAGGATGAGGTCTGGTGCCTATAGTGCAGGCTATGGGGGCTATGAAGAATACAGTGGCCTCAGTGATGGCTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR CAA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTCACTGTCGGCGCTGTTaGGACCACTGTGCTTCAACA | + |
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Preference number: 5 (lower is better) Translates to: NSWCKVGPPASSRVINCSHCRRC*DHCAST Trigger: TGTTGAAGCACAGTGGTCCAAACAGCGCCGACAGTG...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR CAA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTATGTTGGCCCTGTCCTaGGACATAGCTGCCACTGCT | + |
|
Preference number: 5 (lower is better) Translates to: NSWCKVGPPASSRVINCSMLALS*DIAATA Trigger: AGCAGTGGCAGCTATGTCCAAGGACAGGGCCAACAT...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR CAA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTTTTGTACGTCCTCAATaGAGCAGGACCAGGGTAGGC | + |
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Preference number: 5 (lower is better) Translates to: NSWCKVGPPASSRVINCSFVRPQ*SRTRVG Trigger: GCCTACCCTGGTCCTGCTCAATTGAGGACGTACAAA...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR CAA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTCGACCCCATCATGAATaGTGCAGTCGGAGAGGAAGT | + |
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Preference number: 5 (lower is better) Translates to: NSWCKVGPPASSRVINCSRPHHE*CSRRGS Trigger: ACTTCCTCTCCGACTGCACAATTCATGATGGGGTCG...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR CAA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTAAATGTCGTTCTCCGTaGCTTTGTAGGGCAGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: NSWCKVGPPASSRVINCSKCRSP*LCRAAL Trigger: GAGGGCTGCCCTACAAAGCAACGGAGAACGACATTT...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS-3UTR CAA 90 bp | AACTCATGGTGCAAAGTGGGTCCCCCAGCTTCCTCTAGAGTTATAAACTGCTCTTGCCCTATTCTCTCCTaGTGCTTCCCTAAAGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: NSWCKVGPPASSRVINCSCPILS*CFPKAF Trigger: GAAAGCTTTAGGGAAGCACAAGGAGAGAATAGGGCA...AGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS GCA 72 bp | GGCCACTGTAAGTTGCCTGGGCAGCTGACACGCCCATaGCCTGCATCACCTGGCTGCTATAAGCCCCATTGC | + |
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Preference number: 6 (lower is better) Translates to: GHCKLPGQLTRP*PASPGCYKPHC Trigger: GCAATGGGGCTTATAGCAGCCAGGTGATGCAGGGCATGGGCGTGTCAGCTGCCCAGGCAACTTACAGTGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS GCA 72 bp | CTGCCTGTTTCACAATGCCAATGTACCTCCGGGCTGTaGCAGGCCTGTCATAAGGCCCAGGCCTTTGCACAG | + |
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Preference number: 6 (lower is better) Translates to: LPVSQCQCTSGL*QACHKAQAFAQ Trigger: CTGTGCAAAGGCCTGGGCCTTATGACAGGCCTGGCACAGCCCGGAGGTACATTGGCATTGTGAAACAGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000177570.2 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS GCA 72 bp | CAGACCTCATCCTATCCAGACCTGCCTGTTTCACAATaGCAATGTACCTCCGGGCTGTGCCAGGCCTGTCAT | + |
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Preference number: 6 (lower is better) Translates to: QTSSYPDLPVSQ*QCTSGLCQACH Trigger: ATGACAGGCCTGGCACAGCCCGGAGGTACATTGGCATTGTGAAACAGGCAGGTCTGGATAGGATGAGGTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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| CDS GCA 72 bp | TGCACTATAGGCACCAGACCTCATCCTATCCAGACCTaGCTGTTTCACAATGCCAATGTACCTCCGGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: CTIGTRPHPIQT*LFHNANVPPGC Trigger: ACAGCCCGGAGGTACATTGGCATTGTGAAACAGGCAGGTCTGGATAGGATGAGGTCTGGTGCCTATAGTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000035493.14 ENSMUST00000163168.9 ENSMUST00000167182.8 ENSMUST00000180020.8 ENSMUST00000180341.2 |
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