Pregenerated sensors for HNRNPD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000568Ensembl transcript IDs: ENSMUST00000019128.15, ENSMUST00000072750.13, ENSMUST00000112939.10, ENSMUST00000164833.2, ENSMUST00000168396.2, ENSMUST00000171106.8, ENSMUST00000171640.8, ENSMUST00000172361.8
Found 93 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGTAACTTACAGCCACGGTCAGTGAGCCCAGCCACGGCTGCCTGCTaGTCTTTACTGCCGTCATCGCGATACTCACTAGAATGCTCACCA | + |
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Preference number: 1 (lower is better) Translates to: RNLQPRSVSPATAAC*SLLPSSRYSLECSP Trigger: TGGTGAGCATTCTAGTGAGTATCGCGATGACGGCAGTAAAGAGCAGCAGGCAGCCGTGGCTGGGCTCACTGACCGTGGCTGTAAGTTACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR TCA 90 bp | ATTGGAAAATACTGCTTCACCACCAAACGGCAGCATTCGAGAGCGTaGGCATCTCGTACCCTGTCCGCATTGAGCGGGCCTGTGAGAATC | + |
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Preference number: 1 (lower is better) Translates to: IGKYCFTTKRQHSRA*ASRTLSALSGPVRI Trigger: GATTCTCACAGGCCCGCTCAATGCGGACAGGGTACGAGATGCTCACGCTCTCGAATGCTGCCGTTTGGTGGTGAAGCAGTATTTTCCAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164833.2 ENSMUST00000171106.8 |
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| 3UTR TCA 90 bp | GTAAAAACCCTATTTGAAAGACGTCATGTAAGACCTAGATTCAAATaGACAAACTCCCTCAGCAAACCCCTGTCCAGCCTAACCAGGGTT | + |
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Preference number: 1 (lower is better) Translates to: VKTLFERRHVRPRFK*TNSLSKPLSSLTRV Trigger: AACCCTGGTTAGGCTGGACAGGGGTTTGCTGAGGGAGTTTGTTCATTTGAATCTAGGTCTTACATGACGTCTTTCAAATAGGGTTTTTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR GCA 90 bp | AGGATCAAGACCAATCTGATAGCAGCTCATGAACTAGGCTCAAACTaGCCCAAGCAAGTTTTTGGTGTGGTATTTATGGAAAACAGGCAT | + |
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Preference number: 1 (lower is better) Translates to: RIKTNLIAAHELGSN*PKQVFGVVFMENRH Trigger: ATGCCTGTTTTCCATAAATACCACACCAAAAACTTGCTTGGGGCAGTTTGAGCCTAGTTCATGAGCTGCTATCAGATTGGTCTTGATCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR TCA 90 bp | GTGCTGAATGTAAATCCTGGTAACAGGAACTTATTCGGGACGAACTaGTGTCAAATCAGCACACTGAATTCTGACTTGGGAACAGCAATT | + |
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Preference number: 1 (lower is better) Translates to: VLNVNPGNRNLFGTN*CQISTLNSDLGTAI Trigger: AATTGCTGTTCCCAAGTCAGAATTCAGTGTGCTGATTTGACATCAGTTCGTCCCGAATAAGTTCCTGTTACCAGGATTTACATTCAGCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR TCA 90 bp | GAACTTATTCGGGACGAACTGATGTCAAATCAGCACACTGAATTCTaGCTTGGGAACAGCAATTGTCATATAATGAAGCAATTGCCATCC | + |
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Preference number: 1 (lower is better) Translates to: ELIRDELMSNQHTEF*LGNSNCHIMKQLPS Trigger: GGATGGCAATTGCTTCATTATATGACAATTGCTGTTCCCAAGTCAGAATTCAGTGTGCTGATTTGACATCAGTTCGTCCCGAATAAGTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR GCA 90 bp | TTTAATCACACTGTGATGACTTCCAATCAGGAAGTTGAATCTGAGTaGAGTGACTTTCTACATTCCACCAGCACAGCTGTTTACAGACAT | + |
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Preference number: 1 (lower is better) Translates to: FNHTVMTSNQEVESE*SDFLHSTSTAVYRH Trigger: ATGTCTGTAAACAGCTGTGCTGGTGGAATGTAGAAAGTCACTGCACTCAGATTCAACTTCCTGATTGGAAGTCATCACAGTGTGATTAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR GCA 90 bp | GAGACAAAGGGATTCCTGGAAAGACAACTAGCTCAGCCTGGACAATaGATAATCAAGAACAAAGCTGACAAGATTTATGCAAATGGCAAA | + |
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Preference number: 1 (lower is better) Translates to: ETKGFLERQLAQPGQ*IIKNKADKIYANGK Trigger: TTTGCCATTTGCATAAATCTTGTCAGCTTTGTTCTTGATTATGCATTGTCCAGGCTGAGCTAGTTGTCTTTCCAGGAATCCCTTTGTCTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR TCA 90 bp | GTAACAGGAACTTATTCGGGACGAACTGATGTCAAATCAGCACACTaGATTCTGACTTGGGAACAGCAATTGTCATATAATGAAGCAATT | + |
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Preference number: 1 (lower is better) Translates to: VTGTYSGRTDVKSAH*ILTWEQQLSYNEAI Trigger: AATTGCTTCATTATATGACAATTGCTGTTCCCAAGTCAGAATTCAGTGTGCTGATTTGACATCAGTTCGTCCCGAATAAGTTCCTGTTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR TCA 90 bp | TTAGTGCAAATCAAAACCCCAAGAAAGCACACTGTAAGCTTCATTTaGAGAATCTATAAGGAAGCTTCTACAATGGAAACAGTCCAGTGG | + |
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Preference number: 1 (lower is better) Translates to: LVQIKTPRKHTVSFI*RIYKEASTMETVQW Trigger: CCACTGGACTGTTTCCATTGTAGAAGCTTCCTTATAGATTCTTCAAATGAAGCTTACAGTGTGCTTTCTTGGGGTTTTGATTTGCACTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR CCA 90 bp | GCCCAAGGAAATTCAGACAAGACTTCTCAACTATTAACTTTAATGTaGCCAGCATTGATTATAGGATTCCATTTTCAGCCTTGCCAAATT | + |
|
Preference number: 1 (lower is better) Translates to: AQGNSDKTSQLLTLM*PALIIGFHFQPCQI Trigger: AATTTGGCAAGGCTGAAAATGGAATCCTATAATCAATGCTGGCCACATTAAAGTTAATAGTTGAGAAGTCTTGTCTGAATTTCCTTGGGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR GCA 90 bp | GAATCTATAAGGAAGCTTCTACAATGGAAACAGTCCAGTGGAATTTaGCTAGAAAGAATAAATCCTGGAAATGTTAAAACGGTACAGAGA | + |
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Preference number: 1 (lower is better) Translates to: ESIRKLLQWKQSSGI*LERINPGNVKTVQR Trigger: TCTCTGTACCGTTTTAACATTTCCAGGATTTATTCTTTCTAGGCAAATTCCACTGGACTGTTTCCATTGTAGAAGCTTCCTTATAGATTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR CCA 90 bp | TCTAGTGTCTCTGAAGCAAACTGTGATGGCTCTCTCTGGACACAGCCATCTGCCGTGTTTGTTCTAAGCTaGGTTCTTGCCAACACCCAG | + |
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Preference number: 2 (lower is better) Translates to: SSVSEANCDGSLWTQPSAVFVLS*VLANTQ Trigger: CTGGGTGTTGGCAAGAACCCAGCTTAGAACAAACAC...GGCAGATGGCTGTGTCCAGAGAGAGCCATCACAGTTTGCTTCAGAGACACTAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR TCA 90 bp | TCTAGTGTCTCTGAAGCAAACTGTGATGGCTCTCTCTGGACACAGCCATCTGCCAGGTCAGCCTTGAAATaGGCTCAAGAATCCACTTCA | + |
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Preference number: 2 (lower is better) Translates to: SSVSEANCDGSLWTQPSARSALK*AQESTS Trigger: TGAAGTGGATTCTTGAGCTCATTTCAAGGCTGACCT...GGCAGATGGCTGTGTCCAGAGAGAGCCATCACAGTTTGCTTCAGAGACACTAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR TCA 90 bp | TCTAGTGTCTCTGAAGCAAACTGTGATGGCTCTCTCTGGACACAGCCATCTGCCGGTAAAAACCCTATTTaGAAGACGTCATGTAAGACC | + |
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Preference number: 2 (lower is better) Translates to: SSVSEANCDGSLWTQPSAGKNPI*KTSCKT Trigger: GGTCTTACATGACGTCTTTCAAATAGGGTTTTTACC...GGCAGATGGCTGTGTCCAGAGAGAGCCATCACAGTTTGCTTCAGAGACACTAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR TCA 90 bp | CAAGACTTCTCAACTATTAACTTTAATGTGGCCAGCATTGATTATAGGATTCCAACAGACTCAGGCATCTaGCCACAGATCGACTGCACC | + |
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Preference number: 2 (lower is better) Translates to: QDFSTINFNVASIDYRIPTDSGI*PQIDCT Trigger: GGTGCAGTCGATCTGTGGTCAGATGCCTGAGTCTGT...TGGAATCCTATAATCAATGCTGGCCACATTAAAGTTAATAGTTGAGAAGTCTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR TCA 90 bp | AAAGATCACTTAGCATCCACTAAAAACTTTGAGCAGGAAGAAGTCCAAGCAACATCTGATAGCAGCTCATaGACTAGGCTCAAACTGCCC | + |
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Preference number: 2 (lower is better) Translates to: KDHLASTKNFEQEEVQATSDSSS*TRLKLP Trigger: GGGCAGTTTGAGCCTAGTTCATGAGCTGCTATCAGA...TGTTGCTTGGACTTCTTCCTGCTCAAAGTTTTTAGTGGATGCTAAGTGATCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR GCA 90 bp | ATTTGGACTGTTCTAACACCCTCACCTTCCACAGAATCTAATTCTGAAACATTGGCCTGGGAAGACTTGTaGCAAACAAGCAGGATGATT | + |
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Preference number: 2 (lower is better) Translates to: IWTVLTPSPSTESNSETLAWEDL*QTSRMI Trigger: AATCATCCTGCTTGTTTGGCACAAGTCTTCCCAGGC...CAATGTTTCAGAATTAGATTCTGTGGAAGGTGAGGGTGTTAGAACAGTCCAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR TCA 90 bp | GAATCTATAAGGAAGCTTCTACAATGGAAACAGTCCAGTGGAATTTGCCTAGAAGCCAAACAAGCAGGATaGTTTAGGAAACAAAGGACC | + |
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Preference number: 2 (lower is better) Translates to: ESIRKLLQWKQSSGICLEAKQAG*FRKQRT Trigger: GGTCCTTTGTTTCCTAAATCATCCTGCTTGTTTGGC...TTCTAGGCAAATTCCACTGGACTGTTTCCATTGTAGAAGCTTCCTTATAGATTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR TCA 90 bp | ATTTGGACTGTTCTAACACCCTCACCTTCCACAGAATCTAATTCTGAAACATTGCAGCACACTGAATTCTaGCTTGGGAACAGCAATTGT | + |
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Preference number: 2 (lower is better) Translates to: IWTVLTPSPSTESNSETLQHTEF*LGNSNC Trigger: ACAATTGCTGTTCCCAAGTCAGAATTCAGTGTGCTG...CAATGTTTCAGAATTAGATTCTGTGGAAGGTGAGGGTGTTAGAACAGTCCAAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR CCA 90 bp | ATTTGGACTGTTCTAACACCCTCACCTTCCACAGAATCTAATTCTGAAACATTGTGTTCCACTCCTCAGTaGAAGCAAAGATCACTTAGC | + |
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Preference number: 2 (lower is better) Translates to: IWTVLTPSPSTESNSETLCSTPQ*KQRSLS Trigger: GCTAAGTGATCTTTGCTTCCACTGAGGAGTGGAACA...CAATGTTTCAGAATTAGATTCTGTGGAAGGTGAGGGTGTTAGAACAGTCCAAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR GCA 90 bp | ATTTGGACTGTTCTAACACCCTCACCTTCCACAGAATCTAATTCTGAAACATTGGAAGTTGAATCTGAGTaGAGTGACTTTCTACATTCC | + |
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Preference number: 2 (lower is better) Translates to: IWTVLTPSPSTESNSETLEVESE*SDFLHS Trigger: GGAATGTAGAAAGTCACTGCACTCAGATTCAACTTC...CAATGTTTCAGAATTAGATTCTGTGGAAGGTGAGGGTGTTAGAACAGTCCAAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR CCA 90 bp | CACAAACCTGCCACTGTAATACAAAGGCAGGGATATGTAAACAAATGTGCATACTCAGACAGGGATTCTTaGGCAAAATCAAATTTTGCT | + |
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Preference number: 2 (lower is better) Translates to: HKPATVIQRQGYVNKCAYSDRDS*AKSNFA Trigger: AGCAAAATTTGATTTTGCCCAAGAATCCCTGTCTGA...GTATGCACATTTGTTTACATATCCCTGCCTTTGTATTACAGTGGCAGGTTTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR CAA 90 bp | CTGAGAGCAAATTATAACAGCAAATTGAATTTGCACAACAGGGTATaGAACTGGCTAGAATCTTTTTGCCCAAGGAAATTCAGACAAGAC | + |
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Preference number: 2 (lower is better) Translates to: LRANYNSKLNLHNRV*NWLESFCPRKFRQD Trigger: GTCTTGTCTGAATTTCCTTGGGCAAAAAGATTCTAGCCAGTTCAATACCCTGTTGTGCAAATTCAATTTGCTGTTATAATTTGCTCTCAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR TCA 90 bp | ATTTGGACTGTTCTAACACCCTCACCTTCCACAGAATCTAATTCTGAAACATTGGCACAAAGAATGGACTaGAAAGCCAGACTTTTTAAT | + |
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Preference number: 2 (lower is better) Translates to: IWTVLTPSPSTESNSETLAQRMD*KARLFN Trigger: ATTAAAAAGTCTGGCTTTTCAGTCCATTCTTTGTGC...CAATGTTTCAGAATTAGATTCTGTGGAAGGTGAGGGTGTTAGAACAGTCCAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR GCA 90 bp | AAAGATCACTTAGCATCCACTAAAAACTTTGAGCAGGAAGAAGTCCAAGCAACAGTCTGCAAATGTTCTTaGCCATTTTTCCAGATTTGT | + |
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Preference number: 2 (lower is better) Translates to: KDHLASTKNFEQEEVQATVCKCS*PFFQIC Trigger: ACAAATCTGGAAAAATGGGCAAGAACATTTGCAGAC...TGTTGCTTGGACTTCTTCCTGCTCAAAGTTTTTAGTGGATGCTAAGTGATCTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR GCA 90 bp | TTCAGACAAGACTTCTCAACTATTAACTTTAATGTGGCCAGCATTGATTATAGGCAATTGCCATCCCAGTaGACAAAGAATGGACTGAAA | + |
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Preference number: 2 (lower is better) Translates to: FRQDFSTINFNVASIDYRQLPSQ*TKNGLK Trigger: TTTCAGTCCATTCTTTGTGCACTGGGATGGCAATTG...CCTATAATCAATGCTGGCCACATTAAAGTTAATAGTTGAGAAGTCTTGTCTGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR CCA 90 bp | CAGACATTTGGCCTATTATATAGGATCAAGACCAATCTGATAGCAGCTCATGAAAGCAAGTTTTTGGTGTaGTATTTATGGAAAACAGGC | + |
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Preference number: 2 (lower is better) Translates to: QTFGLLYRIKTNLIAAHESKFLV*YLWKTG Trigger: GCCTGTTTTCCATAAATACCACACCAAAAACTTGCT...TTCATGAGCTGCTATCAGATTGGTCTTGATCCTATATAATAGGCCAAATGTCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR CCA 90 bp | ATTTGGACTGTTCTAACACCCTCACCTTCCACAGAATCTAATTCTGAAACATTGCCCCAAGCAAGTTTTTaGTGTGGTATTTATGGAAAA | + |
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Preference number: 2 (lower is better) Translates to: IWTVLTPSPSTESNSETLPQASF*CGIYGK Trigger: TTTTCCATAAATACCACACCAAAAACTTGCTTGGGG...CAATGTTTCAGAATTAGATTCTGTGGAAGGTGAGGGTGTTAGAACAGTCCAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR CCA 90 bp | CAAGACTTCTCAACTATTAACTTTAATGTGGCCAGCATTGATTATAGGATTCCATGGGTTCAGTCTTTCTaGCTGTCAAGAATCCTAACA | + |
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Preference number: 2 (lower is better) Translates to: QDFSTINFNVASIDYRIPWVQSF*LSRILT Trigger: TGTTAGGATTCTTGACAGCCAGAAAGACTGAACCCA...TGGAATCCTATAATCAATGCTGGCCACATTAAAGTTAATAGTTGAGAAGTCTTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR CCA 90 bp | CAGACATTTGGCCTATTATATAGGATCAAGACCAATCTGATAGCAGCTCATGAATTGGTGTGGTATTTATaGAAAACAGGCATAATGAAG | + |
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Preference number: 2 (lower is better) Translates to: QTFGLLYRIKTNLIAAHELVWYL*KTGIMK Trigger: CTTCATTATGCCTGTTTTCCATAAATACCACACCAA...TTCATGAGCTGCTATCAGATTGGTCTTGATCCTATATAATAGGCCAAATGTCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR TCA 72 bp | TACTGCTTCACCACCAAACGGCAGCATTCGAGAGCGTaGGCATCTCGTACCCTGTCCGCATTGAGCGGGCCT | + |
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Preference number: 3 (lower is better) Translates to: YCFTTKRQHSRA*ASRTLSALSGP Trigger: AGGCCCGCTCAATGCGGACAGGGTACGAGATGCTCACGCTCTCGAATGCTGCCGTTTGGTGGTGAAGCAGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000164833.2 ENSMUST00000171106.8 |
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| 3UTR-3UTR CAA 90 bp | TCCGCATTGAGCGGGCCTGTGAGAATCGTGAAGTCAGCGCGACACAGGGCCTGCATGAAGTTCCCGCTGTaGGGGATAAGTTGCAAATGG | + |
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Preference number: 3 (lower is better) Translates to: SALSGPVRIVKSARHRACMKFPL*GISCKW Trigger: CCATTTGCAACTTATCCCCAACAGCGGGAACTTCAT...GCAGGCCCTGTGTCGCGCTGACTTCACGATTCTCACAGGCCCGCTCAATGCGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000164833.2 ENSMUST00000171106.8 ENSMUST00000171640.8 |
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| 3UTR-3UTR CAA 90 bp | ACCCTGTCCGCATTGAGCGGGCCTGTGAGAATCGTGAAGTCAGCGCGACACAGGATGAAGTTCCCGCTGTaGGGGATAAGTTGCAAATGG | + |
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Preference number: 3 (lower is better) Translates to: TLSALSGPVRIVKSARHRMKFPL*GISCKW Trigger: CCATTTGCAACTTATCCCCAACAGCGGGAACTTCAT...CCTGTGTCGCGCTGACTTCACGATTCTCACAGGCCCGCTCAATGCGGACAGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000164833.2 ENSMUST00000171106.8 ENSMUST00000171640.8 |
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| 3UTR TCA 72 bp | GCTGGGTTCTTGCCAACACCCAGGTCAGCCTTGAAATaGGCTCAAGAATCCACTTCAGCCTTCCCAGGGTTG | + |
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Preference number: 3 (lower is better) Translates to: AGFLPTPRSALK*AQESTSAFPGL Trigger: CAACCCTGGGAAGGCTGAAGTGGATTCTTGAGCTCATTTCAAGGCTGACCTGGGTGTTGGCAAGAACCCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR CAA 90 bp | TCTAGTGTCTCTGAAGCAAACTGTGATGGCTCTCTCTGGACACAGCCATCTGCCGGGCTGCAGCCCTCATaGTATGTCTCTCATGAACTT | + |
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Preference number: 3 (lower is better) Translates to: SSVSEANCDGSLWTQPSAGLQPS*YVSHEL Trigger: AAGTTCATGAGAGACATACAATGAGGGCTGCAGCCC...GGCAGATGGCTGTGTCCAGAGAGAGCCATCACAGTTTGCTTCAGAGACACTAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR TCA 72 bp | CATCTGACCACAGATCGACTGCACCCATGGCTCACGTaGCTAACAGCTCTTCAAGTCTGCTTCCAACTAACT | + |
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Preference number: 3 (lower is better) Translates to: HLTTDRLHPWLT*LTALQVCFQLT Trigger: AGTTAGTTGGAAGCAGACTTGAAGAGCTGTTAGTCACGTGAGCCATGGGTGCAGTCGATCTGTGGTCAGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR TCA 72 bp | GTAGCCATCACCACGGCTAAGACTTGGGAGTTTATGTaGACTAGAGAATCCCAGGCAACAACGCTGTACAAC | + |
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Preference number: 3 (lower is better) Translates to: VAITTAKTWEFM*TRESQATTLYN Trigger: GTTGTACAGCGTTGTTGCCTGGGATTCTCTAGTTCACATAAACTCCCAAGTCTTAGCCGTGGTGATGGCTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR TCA 72 bp | ATGAGACCAACTCAAGACTTCAGTAGCAAGACAACTTaGGTCAGCCAGTTAGTCCGCAATGCAATGACTCCG | + |
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Preference number: 3 (lower is better) Translates to: MRPTQDFSSKTT*VSQLVRNAMTP Trigger: CGGAGTCATTGCATTGCGGACTAACTGGCTGACTCAAGTTGTCTTGCTACTGAAGTCTTGAGTTGGTCTCAT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR GCA 72 bp | ACTGTGATGACTTCCAATCAGGAAGTTGAATCTGAGTaGAGTGACTTTCTACATTCCACCAGCACAGCTGTT | + |
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Preference number: 3 (lower is better) Translates to: TVMTSNQEVESE*SDFLHSTSTAV Trigger: AACAGCTGTGCTGGTGGAATGTAGAAAGTCACTGCACTCAGATTCAACTTCCTGATTGGAAGTCATCACAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR TCA 72 bp | CTATTTGAAAGACGTCATGTAAGACCTAGATTCAAATaGACAAACTCCCTCAGCAAACCCCTGTCCAGCCTA | + |
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Preference number: 3 (lower is better) Translates to: LFERRHVRPRFK*TNSLSKPLSSL Trigger: TAGGCTGGACAGGGGTTTGCTGAGGGAGTTTGTTCATTTGAATCTAGGTCTTACATGACGTCTTTCAAATAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR TCA 72 bp | GTAAATCCTGGTAACAGGAACTTATTCGGGACGAACTaGTGTCAAATCAGCACACTGAATTCTGACTTGGGA | + |
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Preference number: 3 (lower is better) Translates to: VNPGNRNLFGTN*CQISTLNSDLG Trigger: TCCCAAGTCAGAATTCAGTGTGCTGATTTGACATCAGTTCGTCCCGAATAAGTTCCTGTTACCAGGATTTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR GCA 72 bp | ACCAATCTGATAGCAGCTCATGAACTAGGCTCAAACTaGCCCAAGCAAGTTTTTGGTGTGGTATTTATGGAA | + |
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Preference number: 3 (lower is better) Translates to: TNLIAAHELGSN*PKQVFGVVFME Trigger: TTCCATAAATACCACACCAAAAACTTGCTTGGGGCAGTTTGAGCCTAGTTCATGAGCTGCTATCAGATTGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR GCA 72 bp | CTTTCGACTTTAAGGTGCTCAAGTCAACAGGGTAAATaGATGAGACCAACTCAAGACTTCAGTAGCAAGACA | + |
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Preference number: 3 (lower is better) Translates to: LSTLRCSSQQGK*MRPTQDFSSKT Trigger: TGTCTTGCTACTGAAGTCTTGAGTTGGTCTCATGCATTTACCCTGTTGACTTGAGCACCTTAAAGTCGAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGATCACTTAGCATCCACTAAAAACTTTGAGCAGGAAGAAGTCCAAGCAACAGAACTAGGGAAGTTTTaGTCCAGGGCTCAACAAAGA | + |
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Preference number: 3 (lower is better) Translates to: KDHLASTKNFEQEEVQATELGKF*SRAQQR Trigger: TCTTTGTTGAGCCCTGGACAAAAACTTCCCTAGTTC...TGTTGCTTGGACTTCTTCCTGCTCAAAGTTTTTAGTGGATGCTAAGTGATCTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR CAA 90 bp | GAATCTATAAGGAAGCTTCTACAATGGAAACAGTCCAGTGGAATTTGCCTAGAAAAAGCAGAGGTAACCTaGCCTTCAAATTCTAGAGTG | + |
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Preference number: 3 (lower is better) Translates to: ESIRKLLQWKQSSGICLEKAEVT*PSNSRV Trigger: CACTCTAGAATTTGAAGGCAAGGTTACCTCTGCTTT...TTCTAGGCAAATTCCACTGGACTGTTTCCATTGTAGAAGCTTCCTTATAGATTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGATCACTTAGCATCCACTAAAAACTTTGAGCAGGAAGAAGTCCAAGCAACATTCAGACAGGGATTCTaGGGCAAAATCAAATTTTGC | + |
|
Preference number: 3 (lower is better) Translates to: KDHLASTKNFEQEEVQATFRQGF*GKIKFC Trigger: GCAAAATTTGATTTTGCCCAAGAATCCCTGTCTGAA...TGTTGCTTGGACTTCTTCCTGCTCAAAGTTTTTAGTGGATGCTAAGTGATCTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| 3UTR-3UTR CAA 90 bp | GAATCTATAAGGAAGCTTCTACAATGGAAACAGTCCAGTGGAATTTGCCTAGAAACACTGAATTCTGACTaGGGAACAGCAATTGTCATA | + |
|
Preference number: 3 (lower is better) Translates to: ESIRKLLQWKQSSGICLETLNSD*GTAIVI Trigger: TATGACAATTGCTGTTCCCAAGTCAGAATTCAGTGT...TTCTAGGCAAATTCCACTGGACTGTTTCCATTGTAGAAGCTTCCTTATAGATTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| 3UTR TCA 72 bp | ACTTATTCGGGACGAACTGATGTCAAATCAGCACACTaGATTCTGACTTGGGAACAGCAATTGTCATATAAT | + |
|
Preference number: 3 (lower is better) Translates to: TYSGRTDVKSAH*ILTWEQQLSYN Trigger: ATTATATGACAATTGCTGTTCCCAAGTCAGAATTCAGTGTGCTGATTTGACATCAGTTCGTCCCGAATAAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| 3UTR GCA 72 bp | TTGCACAACAGGGTATTGAACTGGCTAGAATCTTTTTaGCCAAGGAAATTCAGACAAGACTTCTCAACTATT | + |
|
Preference number: 3 (lower is better) Translates to: LHNRVLNWLESF*PRKFRQDFSTI Trigger: AATAGTTGAGAAGTCTTGTCTGAATTTCCTTGGGCAAAAAGATTCTAGCCAGTTCAATACCCTGTTGTGCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| 3UTR-3UTR CAA 90 bp | ATTTGGACTGTTCTAACACCCTCACCTTCCACAGAATCTAATTCTGAAACATTGCAACCAACAAGCACATaGACTACATTAAGTCATTTC | + |
|
Preference number: 3 (lower is better) Translates to: IWTVLTPSPSTESNSETLQPTST*TTLSHF Trigger: GAAATGACTTAATGTAGTCAATGTGCTTGTTGGTTG...CAATGTTTCAGAATTAGATTCTGTGGAAGGTGAGGGTGTTAGAACAGTCCAAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| 3UTR TCA 72 bp | AGCTCAGCCTGGACAATGCATAATCAAGAACAAAGCTaGCAAGATTTATGCAAATGGCAAAAGTTCAAGAAA | + |
|
Preference number: 3 (lower is better) Translates to: SSAWTMHNQEQS*QDLCKWQKFKK Trigger: TTTCTTGAACTTTTGCCATTTGCATAAATCTTGTCAGCTTTGTTCTTGATTATGCATTGTCCAGGCTGAGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| 3UTR-3UTR CAA 90 bp | TTCAGACAAGACTTCTCAACTATTAACTTTAATGTGGCCAGCATTGATTATAGGTGTCTGCAAATGTTCTaGCCCATTTTTCCAGATTTG | + |
|
Preference number: 3 (lower is better) Translates to: FRQDFSTINFNVASIDYRCLQMF*PIFPDL Trigger: CAAATCTGGAAAAATGGGCAAGAACATTTGCAGACA...CCTATAATCAATGCTGGCCACATTAAAGTTAATAGTTGAGAAGTCTTGTCTGAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| 3UTR TCA 72 bp | TTTCCACCTTTATCAGTGAAGTTAATGAGTGTCGACTaGTCTGTATATTTAAAAATTCCTCCCACTGCAAGT | + |
|
Preference number: 3 (lower is better) Translates to: FPPLSVKLMSVD*SVYLKIPPTAS Trigger: ACTTGCAGTGGGAGGAATTTTTAAATATACAGATCAGTCGACACTCATTAACTTCACTGATAAAGGTGGAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| 3UTR CCA 72 bp | GCTTCATTTGAAGAATCTATAAGGAAGCTTCTACAATaGAAACAGTCCAGTGGAATTTGCCTAGAAAGAATA | + |
|
Preference number: 3 (lower is better) Translates to: ASFEESIRKLLQ*KQSSGICLERI Trigger: TATTCTTTCTAGGCAAATTCCACTGGACTGTTTCCATTGTAGAAGCTTCCTTATAGATTCTTCAAATGAAGC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| 3UTR GCA 72 bp | TGTCGACTGATCTGTATATTTAAAAATTCCTCCCACTaGAAGTCTACAATAACAAATTTGGACTGTTCTAAC | + |
|
Preference number: 3 (lower is better) Translates to: CRLICIFKNSSH*KSTITNLDCSN Trigger: GTTAGAACAGTCCAAATTTGTTATTGTAGACTTGCAGTGGGAGGAATTTTTAAATATACAGATCAGTCGACA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| 3UTR CCA 72 bp | TATAATGAAGCAATTGCCATCCCAGTGCACAAAGAATaGACTGAAAAGCCAGACTTTTTAATACATATTAAG | + |
|
Preference number: 3 (lower is better) Translates to: YNEAIAIPVHKE*TEKPDFLIHIK Trigger: CTTAATATGTATTAAAAAGTCTGGCTTTTCAGTCCATTCTTTGTGCACTGGGATGGCAATTGCTTCATTATA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| 3UTR CCA 72 bp | AATTCAGACAAGACTTCTCAACTATTAACTTTAATGTaGCCAGCATTGATTATAGGATTCCATTTTCAGCCT | + |
|
Preference number: 3 (lower is better) Translates to: NSDKTSQLLTLM*PALIIGFHFQP Trigger: AGGCTGAAAATGGAATCCTATAATCAATGCTGGCCACATTAAAGTTAATAGTTGAGAAGTCTTGTCTGAATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| CDS-3UTR CCA 90 bp | CCTGTCCGCATTGAGCGGGCCTGTGAGAATCGTGAAGTCAGCGCGACACAGGGCGGTTCCAGTTTTGACTaGGGCCTCCACCTCTTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: PVRIERACENREVSATQGGSSFD*GLHLFR Trigger: GCGGAAGAGGTGGAGGCCCCAGTCAAAACTGGAACC...GCCCTGTGTCGCGCTGACTTCACGATTCTCACAGGCCCGCTCAATGCGGACAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164833.2 |
||
| CDS-3UTR GCA 90 bp | TCTAGTGTCTCTGAAGCAAACTGTGATGGCTCTCTCTGGACACAGCCATCTGCCGATCTTGGCTCCCTCTaGCTCGGCGCTGCCTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: SSVSEANCDGSLWTQPSADLGSL*LGAASF Trigger: GAAGGAGGCAGCGCCGAGGCAGAGGGAGCCAAGATC...GGCAGATGGCTGTGTCCAGAGAGAGCCATCACAGTTTGCTTCAGAGACACTAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| CDS-3UTR TCA 90 bp | ATACTGCTTCACCACCAAACGGCAGCATTCGAGAGCGTGAGCATCTCGTACCCTCCCTGGTTCCAGTTTTaGCTGGGGCCTCCACCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: ILLHHQTAAFESVSISYPPWFQF*LGPPPL Trigger: AAGAGGTGGAGGCCCCAGTCAAAACTGGAACCAGGG...AGGGTACGAGATGCTCACGCTCTCGAATGCTGCCGTTTGGTGGTGAAGCAGTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164833.2 |
||
| CDS-3UTR GCA 90 bp | ACGGCAGCATTCGAGAGCGTGAGCATCTCGTACCCTGTCCGCATTGAGCGGGCCGATCTAACTTCAGAGTaGAGTCTACAACTTCACCAA | + |
|
Preference number: 4 (lower is better) Translates to: TAAFESVSISYPVRIERADLTSE*SLQLHQ Trigger: TTGGTGAAGTTGTAGACTGCACTCTGAAGTTAGATC...GGCCCGCTCAATGCGGACAGGGTACGAGATGCTCACGCTCTCGAATGCTGCCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171106.8 |
||
| CDS-3UTR GCA 90 bp | GCTTCTAGTGACTTGAATCCAAGACAAACATTTGTAGTATTTCACTTCCTCCTAACCATGGCTCCCTCCTaGTCGCCCGCCGAGCCGCCT | + |
|
Preference number: 4 (lower is better) Translates to: ASSDLNPRQTFVVFHFLLTMAPS*SPAEPP Trigger: AGGCGGCTCGGCGGGCGAGCAGGAGGGAGCCATGGT...TAGGAGGAAGTGAAATACTACAAATGTTTGTCTTGGATTCAAGTCACTAGAAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019128.15 ENSMUST00000172361.8 |
||
| CDS-3UTR GCA 90 bp | ATTTGGACTGTTCTAACACCCTCACCTTCCACAGAATCTAATTCTGAAACATTGCCGCTGTGCCGCCGCTaGTTCAGTGTGTCGTGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: IWTVLTPSPSTESNSETLPLCRR*FSVSWG Trigger: TCCCCACGACACACTGAAGCAGCGGCGGCACAGCGG...CAATGTTTCAGAATTAGATTCTGTGGAAGGTGAGGGTGTTAGAACAGTCCAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| CDS-3UTR GCA 90 bp | GCTTCTAGTGACTTGAATCCAAGACAAACATTTGTAGTATTTCACTTCCTCCTACCGCTGTGCCGCCGCTaGTTCAGTGTGTCGTGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: ASSDLNPRQTFVVFHFLLPLCRR*FSVSWG Trigger: TCCCCACGACACACTGAAGCAGCGGCGGCACAGCGG...TAGGAGGAAGTGAAATACTACAAATGTTTGTCTTGGATTCAAGTCACTAGAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019128.15 ENSMUST00000172361.8 |
||
| CDS-3UTR GCA 90 bp | ATTTGGACTGTTCTAACACCCTCACCTTCCACAGAATCTAATTCTGAAACATTGCCATTCTTCCCGCTGTaGCGCCGCTGCTTCAGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: IWTVLTPSPSTESNSETLPFFPL*RRCFSV Trigger: CACACTGAAGCAGCGGCGGCACAGCGGGAAGAATGG...CAATGTTTCAGAATTAGATTCTGTGGAAGGTGAGGGTGTTAGAACAGTCCAAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| CDS-3UTR TCA 90 bp | CACAAACCTGCCACTGTAATACAAAGGCAGGGATATGTAAACAAATGTGCATACTCGTGGGGAGGAGTTTaGATGGCCTTCATCCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: HKPATVIQRQGYVNKCAYSWGGV*MAFILL Trigger: GAGGAGGATGAAGGCCATTCAAACTCCTCCCCACGA...GTATGCACATTTGTTTACATATCCCTGCCTTTGTATTACAGTGGCAGGTTTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| CDS-3UTR TCA 90 bp | AAAGATCACTTAGCATCCACTAAAAACTTTGAGCAGGAAGAAGTCCAAGCAACACCCTGGTTCCAGTTTTaGCTGGGGCCTCCACCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: KDHLASTKNFEQEEVQATPWFQF*LGPPPL Trigger: AAGAGGTGGAGGCCCCAGTCAAAACTGGAACCAGGG...TGTTGCTTGGACTTCTTCCTGCTCAAAGTTTTTAGTGGATGCTAAGTGATCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| CDS-3UTR GCA 90 bp | CACTACATTTTTAACCATGCCCTCTTTCAGACAAAGTTTACCGTTGTTTTTATCGATCTTGGCTCCCTCTaGCTCGGCGCTGCCTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: HYIFNHALFQTKFTVVFIDLGSL*LGAASF Trigger: GAAGGAGGCAGCGCCGAGGCAGAGGGAGCCAAGATC...GATAAAAACAACGGTAAACTTTGTCTGAAAGAGGGCATGGTTAAAAATGTAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000019128.15 ENSMUST00000172361.8 |
||
| CDS-3UTR GCA 90 bp | TCTAGTGTCTCTGAAGCAAACTGTGATGGCTCTCTCTGGACACAGCCATCTGCCGATCTAACTTCAGAGTaGAGTCTACAACTTCACCAA | + |
|
Preference number: 4 (lower is better) Translates to: SSVSEANCDGSLWTQPSADLTSE*SLQLHQ Trigger: TTGGTGAAGTTGTAGACTGCACTCTGAAGTTAGATC...GGCAGATGGCTGTGTCCAGAGAGAGCCATCACAGTTTGCTTCAGAGACACTAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| CDS-3UTR GCA 90 bp | CACTACATTTTTAACCATGCCCTCTTTCAGACAAAGTTTACCGTTGTTTTTATCCCATTCTTCCCGCTGTaGCGCCGCTGCTTCAGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: HYIFNHALFQTKFTVVFIPFFPL*RRCFSV Trigger: CACACTGAAGCAGCGGCGGCACAGCGGGAAGAATGG...GATAAAAACAACGGTAAACTTTGTCTGAAAGAGGGCATGGTTAAAAATGTAGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000019128.15 ENSMUST00000172361.8 |
||
| CDS-3UTR CCA 90 bp | GCTTCTAGTGACTTGAATCCAAGACAAACATTTGTAGTATTTCACTTCCTCCTAGGTTCCAGTTTTGACTaGGGCCTCCACCTCTTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: ASSDLNPRQTFVVFHFLLGSSFD*GLHLFR Trigger: GCGGAAGAGGTGGAGGCCCCAGTCAAAACTGGAACC...TAGGAGGAAGTGAAATACTACAAATGTTTGTCTTGGATTCAAGTCACTAGAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| CDS-3UTR TCA 90 bp | GCTTCTAGTGACTTGAATCCAAGACAAACATTTGTAGTATTTCACTTCCTCCTATCGTGGGGAGGAGTTTaGATGGCCTTCATCCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: ASSDLNPRQTFVVFHFLLSWGGV*MAFILL Trigger: GAGGAGGATGAAGGCCATTCAAACTCCTCCCCACGA...TAGGAGGAAGTGAAATACTACAAATGTTTGTCTTGGATTCAAGTCACTAGAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019128.15 ENSMUST00000172361.8 |
||
| CDS-3UTR CCA 90 bp | GCTTCTAGTGACTTGAATCCAAGACAAACATTTGTAGTATTTCACTTCCTCCTAGGGGAGGAGTTTGAATaGCCTTCATCCTCCTCGTTC | + |
|
Preference number: 4 (lower is better) Translates to: ASSDLNPRQTFVVFHFLLGEEFE*PSSSSF Trigger: GAACGAGGAGGATGAAGGCCATTCAAACTCCTCCCC...TAGGAGGAAGTGAAATACTACAAATGTTTGTCTTGGATTCAAGTCACTAGAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019128.15 ENSMUST00000172361.8 |
||
| CDS-3UTR CCA 90 bp | TTGGAAAATACTGCTTCACCACCAAACGGCAGCATTCGAGAGCGTGAGCATCTCCAACTTCACCAAATTTaGAAAAGTAGTCCTTCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: LENTASPPNGSIREREHLQLHQI*KSSPSD Trigger: ATCTGAAGGACTACTTTTCCAAATTTGGTGAAGTTG...GAGATGCTCACGCTCTCGAATGCTGCCGTTTGGTGGTGAAGCAGTATTTTCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171106.8 |
||
| CDS-3UTR CCA 90 bp | CACTACATTTTTAACCATGCCCTCTTTCAGACAAAGTTTACCGTTGTTTTTATCGGGGAGGAGTTTGAATaGCCTTCATCCTCCTCGTTC | + |
|
Preference number: 4 (lower is better) Translates to: HYIFNHALFQTKFTVVFIGEEFE*PSSSSF Trigger: GAACGAGGAGGATGAAGGCCATTCAAACTCCTCCCC...GATAAAAACAACGGTAAACTTTGTCTGAAAGAGGGCATGGTTAAAAATGTAGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000019128.15 ENSMUST00000172361.8 |
||
| 3UTR CAA 72 bp | ATATATCTAGTAAACAAGATACAGAAAGCTCATTGCTaGAGGACTGGCAATACTAGCAGGTCTACCCACAAG | + |
|
Preference number: 4 (lower is better) Translates to: IYLVNKIQKAHC*RTGNTSRSTHK Trigger: CTTGTGGGTAGACCTGCTAGTATTGCCAGTCCTCAAGCAATGAGCTTTCTGTATCTTGTTTACTAGATATAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| CDS-3UTR GCA 90 bp | GCTTCTAGTGACTTGAATCCAAGACAAACATTTGTAGTATTTCACTTCCTCCTAGATCTAACTTCAGAGTaGAGTCTACAACTTCACCAA | + |
|
Preference number: 4 (lower is better) Translates to: ASSDLNPRQTFVVFHFLLDLTSE*SLQLHQ Trigger: TTGGTGAAGTTGTAGACTGCACTCTGAAGTTAGATC...TAGGAGGAAGTGAAATACTACAAATGTTTGTCTTGGATTCAAGTCACTAGAAGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019128.15 ENSMUST00000172361.8 |
||
| CDS-3UTR CCA 90 bp | GCTTCTAGTGACTTGAATCCAAGACAAACATTTGTAGTATTTCACTTCCTCCTACAACTTCACCAAATTTaGAAAAGTAGTCCTTCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: ASSDLNPRQTFVVFHFLLQLHQI*KSSPSD Trigger: ATCTGAAGGACTACTTTTCCAAATTTGGTGAAGTTG...TAGGAGGAAGTGAAATACTACAAATGTTTGTCTTGGATTCAAGTCACTAGAAGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019128.15 ENSMUST00000172361.8 |
||
| 3UTR CAA 72 bp | AAGACTTCTCAACTATTAACTTTAATGTGGCCAGCATaGATTATAGGATTCCATTTTCAGCCTTGCCAAATT | + |
|
Preference number: 4 (lower is better) Translates to: KTSQLLTLMWPA*IIGFHFQPCQI Trigger: AATTTGGCAAGGCTGAAAATGGAATCCTATAATCAATGCTGGCCACATTAAAGTTAATAGTTGAGAAGTCTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| 3UTR CAA 72 bp | AATTATAACAGCAAATTGAATTTGCACAACAGGGTATaGAACTGGCTAGAATCTTTTTGCCCAAGGAAATTC | + |
|
Preference number: 4 (lower is better) Translates to: NYNSKLNLHNRV*NWLESFCPRKF Trigger: GAATTTCCTTGGGCAAAAAGATTCTAGCCAGTTCAATACCCTGTTGTGCAAATTCAATTTGCTGTTATAATT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| CDS-3UTR CCA 90 bp | CACTACATTTTTAACCATGCCCTCTTTCAGACAAAGTTTACCGTTGTTTTTATCCAACTTCACCAAATTTaGAAAAGTAGTCCTTCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: HYIFNHALFQTKFTVVFIQLHQI*KSSPSD Trigger: ATCTGAAGGACTACTTTTCCAAATTTGGTGAAGTTG...GATAAAAACAACGGTAAACTTTGTCTGAAAGAGGGCATGGTTAAAAATGTAGTG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000019128.15 ENSMUST00000172361.8 |
||
| CDS GCA 90 bp | CATGGCTCCCTCCTGCTCGCCCGCCGAGCCGCCTACCGCCGCCGTTaGCGCCGCCGCCGCCCCGTCCCCTCCGAACTGCTCCTCCGACAT | + |
|
Preference number: 5 (lower is better) Translates to: HGSLLLARRAAYRRR*RRRRPVPSELLLRH Trigger: ATGTCGGAGGAGCAGTTCGGAGGGGACGGGGCGGCGGCGGCGGCAACGGCGGCGGTAGGCGGCTCGGCGGGCGAGCAGGAGGGAGCCATG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000019128.15 ENSMUST00000072750.13 ENSMUST00000112939.10 ENSMUST00000168396.2 ENSMUST00000172361.8 |
||
| CDS GCA 90 bp | TGGCGTCGATCTTGGCTCCCTCTGCCTCGGCGCTGCCTCCTTCGGTaGCTCCGGCCGCAGAGCCGCCGCCGCCGCTCCCGCTTCCCGCCG | + |
|
Preference number: 5 (lower is better) Translates to: WRRSWLPLPRRCLLR*LRPQSRRRRSRFPP Trigger: CGGCGGGAAGCGGGAGCGGCGGCGGCGGCTCTGCGGCCGGAGGCACCGAAGGAGGCAGCGCCGAGGCAGAGGGAGCCAAGATCGACGCCA 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000019128.15 ENSMUST00000072750.13 ENSMUST00000112939.10 ENSMUST00000168396.2 ENSMUST00000172361.8 |
||
| CDS-3UTR CAA 90 bp | GCATCTCGTACCCTGTCCGCATTGAGCGGGCCTGTGAGAATCGTGAAGTCAGCGTCCCTGGTTCCAGTTTaGACTGGGGCCTCCACCTCT | + |
|
Preference number: 5 (lower is better) Translates to: ASRTLSALSGPVRIVKSASLVPV*TGASTS Trigger: AGAGGTGGAGGCCCCAGTCAAAACTGGAACCAGGGA...CGCTGACTTCACGATTCTCACAGGCCCGCTCAATGCGGACAGGGTACGAGATGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164833.2 |
||
| CDS-3UTR CAA 90 bp | GCATCTCGTACCCTGTCCGCATTGAGCGGGCCTGTGAGAATCGTGAAGTCAGCGTGGTTTGTAGCTATTTaGATGTCCACCTCGCCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: ASRTLSALSGPVRIVKSAWFVAI*MSTSPG Trigger: TCCAGGCGAGGTGGACATCAAAATAGCTACAAACCA...CGCTGACTTCACGATTCTCACAGGCCCGCTCAATGCGGACAGGGTACGAGATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000164833.2 ENSMUST00000171106.8 |
||
| CDS-3UTR CAA 90 bp | TTCGAGAGCGTGAGCATCTCGTACCCTGTCCGCATTGAGCGGGCCTGTGAGAATTGGTTTGTAGCTATTTaGATGTCCACCTCGCCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: FESVSISYPVRIERACENWFVAI*MSTSPG Trigger: TCCAGGCGAGGTGGACATCAAAATAGCTACAAACCA...ATTCTCACAGGCCCGCTCAATGCGGACAGGGTACGAGATGCTCACGCTCTCGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000164833.2 ENSMUST00000171106.8 |
||
| CDS-3UTR CAA 90 bp | CCCTCTTTCAGACAAAGTTTACCGTTGTTTTTATCCCCTCAAATTTATGCTTCTTTACTGGCGTCGATCTaGGCTCCCTCTGCCTCGGCG | + |
|
Preference number: 5 (lower is better) Translates to: PSFRQSLPLFLSPQIYASLLASI*APSASA Trigger: CGCCGAGGCAGAGGGAGCCAAGATCGACGCCAGTAA...AGAAGCATAAATTTGAGGGGATAAAAACAACGGTAAACTTTGTCTGAAAGAGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019128.15 ENSMUST00000172361.8 |
||
| CDS-3UTR CAA 90 bp | GCTTCTAGTGACTTGAATCCAAGACAAACATTTGTAGTATTTCACTTCCTCCTATCCCTGGTTCCAGTTTaGACTGGGGCCTCCACCTCT | + |
|
Preference number: 5 (lower is better) Translates to: ASSDLNPRQTFVVFHFLLSLVPV*TGASTS Trigger: AGAGGTGGAGGCCCCAGTCAAAACTGGAACCAGGGA...TAGGAGGAAGTGAAATACTACAAATGTTTGTCTTGGATTCAAGTCACTAGAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172361.8 |
||
| CDS-3UTR CAA 90 bp | GCTTCTAGTGACTTGAATCCAAGACAAACATTTGTAGTATTTCACTTCCTCCTAGTCGTGGGGAGGAGTTaGAATGGCCTTCATCCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: ASSDLNPRQTFVVFHFLLVVGRS*NGLHPP Trigger: AGGAGGATGAAGGCCATTCAAACTCCTCCCCACGAC...TAGGAGGAAGTGAAATACTACAAATGTTTGTCTTGGATTCAAGTCACTAGAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019128.15 ENSMUST00000172361.8 |
||
| CDS-3UTR CAA 90 bp | GCTTCTAGTGACTTGAATCCAAGACAAACATTTGTAGTATTTCACTTCCTCCTATGGTTTGTAGCTATTTaGATGTCCACCTCGCCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: ASSDLNPRQTFVVFHFLLWFVAI*MSTSPG Trigger: TCCAGGCGAGGTGGACATCAAAATAGCTACAAACCA...TAGGAGGAAGTGAAATACTACAAATGTTTGTCTTGGATTCAAGTCACTAGAAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019128.15 ENSMUST00000172361.8 |
||
| CDS CAA 90 bp | CCATGGCTCCCTCCTGCTCGCCCGCCGAGCCGCCTACCGCCGCCGTaGCCGCCGCCGCCGCCCCGTCCCCTCCGAACTGCTCCTCCGACA | + |
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Preference number: 6 (lower is better) Translates to: PWLPPARPPSRLPPP*PPPPPRPLRTAPPT Trigger: TGTCGGAGGAGCAGTTCGGAGGGGACGGGGCGGCGGCGGCGGCAACGGCGGCGGTAGGCGGCTCGGCGGGCGAGCAGGAGGGAGCCATGG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000019128.15 ENSMUST00000072750.13 ENSMUST00000112939.10 ENSMUST00000168396.2 ENSMUST00000172361.8 |
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| CDS GCA 72 bp | TACTGGCGTCGATCTTGGCTCCCTCTGCCTCGGCGCTaGCTCCTTCGGTGCCTCCGGCCGCAGAGCCGCCGC | + |
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Preference number: 6 (lower is better) Translates to: YWRRSWLPLPRR*LLRCLRPQSRR Trigger: GCGGCGGCTCTGCGGCCGGAGGCACCGAAGGAGGCAGCGCCGAGGCAGAGGGAGCCAAGATCGACGCCAGTA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000019128.15 ENSMUST00000072750.13 ENSMUST00000112939.10 ENSMUST00000168396.2 ENSMUST00000172361.8 |
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