Pregenerated sensors for HNRNPC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060373Ensembl transcript IDs: ENSMUST00000111610.12, ENSMUST00000164655.2, ENSMUST00000227242.2, ENSMUST00000227458.2, ENSMUST00000227536.2, ENSMUST00000228198.2, ENSMUST00000228232.2, ENSMUST00000228748.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TCCCACTCACGTGAGGGAAAACACACACCTCTAATGCAAAGCTGCTCTTGGGGTGGCGCAGGGCAATCATaGATTAATGAACACAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: SHSREGKHTPLMQSCSWGGAGQS*INEHRE Trigger: CTCCCTGTGTTCATTAATTCATGATTGCCCTGCGCC...ACCCCAAGAGCAGCTTTGCATTAGAGGTGTGTGTTTTCCCTCACGTGAGTGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000228198.2 ENSMUST00000228748.2 |
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| 3UTR-3UTR CCA 90 bp | TCCCACTCACGTGAGGGAAAACACACACCTCTAATGCAAAGCTGCTCTTGGGGTCCAGGGGAGATGACCTaGTGTTACTTTCATCTCCCA | + |
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Preference number: 2 (lower is better) Translates to: SHSREGKHTPLMQSCSWGPGEMT*CYFHLP Trigger: TGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGG...ACCCCAAGAGCAGCTTTGCATTAGAGGTGTGTGTTTTCCCTCACGTGAGTGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 6 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000228198.2 ENSMUST00000228748.2 |
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| 3UTR-3UTR CCA 90 bp | CATTTTTATATTTGCACACTGGAGCCAAGGGAAGCCCCTAGATCAGCCTCTCCTAGTTCCAGGCCAGCCTaGTCTACAAAGTGGGTTCCA | + |
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Preference number: 2 (lower is better) Translates to: HFYICTLEPREAPRSASPSSRPA*STKWVP Trigger: TGGAACCCACTTTGTAGACCAGGCTGGCCTGGAACT...AGGAGAGGCTGATCTAGGGGCTTCCCTTGGCTCCAGTGTGCAAATATAAAAATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 |
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| 3UTR-3UTR TCA 90 bp | TCCCACTCACGTGAGGGAAAACACACACCTCTAATGCAAAGCTGCTCTTGGGGTCAACTACTGAAGTCATaGATGGGAAGAACTGTACTC | + |
|
Preference number: 2 (lower is better) Translates to: SHSREGKHTPLMQSCSWGQLLKS*MGRTVL Trigger: GAGTACAGTTCTTCCCATTCATGACTTCAGTAGTTG...ACCCCAAGAGCAGCTTTGCATTAGAGGTGTGTGTTTTCCCTCACGTGAGTGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000228198.2 ENSMUST00000228748.2 |
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| 3UTR-3UTR TCA 90 bp | AAGCCCCCAAATCTGTTTATACCTTTACCTTATGTTAGGTCTTACACAGCAAAAAAGGCGGGACAACAGTaGGAATGTGCAGAAGACCCC | + |
|
Preference number: 2 (lower is better) Translates to: KPPNLFIPLPYVRSYTAKKAGQQ*ECAEDP Trigger: GGGGTCTTCTGCACATTCTCACTGTTGTCCCGCCTT...TTTTGCTGTGTAAGACCTAACATAAGGTAAAGGTATAAACAGATTTGGGGGCTT 44% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000228198.2 |
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| 3UTR-3UTR CCA 90 bp | TTACCTTATGTTAGGTCTTACACAGCAAAATGTTCCAAGCTGACTCAAACAAATCTTTCCAGCAGGGTGTaGTGGCGCACGGCTTTAATC | + |
|
Preference number: 2 (lower is better) Translates to: LPYVRSYTAKCSKLTQTNLSSRV*WRTALI Trigger: GATTAAAGCCGTGCGCCACCACACCCTGCTGGAAAG...ATTTGTTTGAGTCAGCTTGGAACATTTTGCTGTGTAAGACCTAACATAAGGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000228198.2 |
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| 3UTR-3UTR TCA 90 bp | CAGTTCTTAGGAAGGCAAATGCTATATAAAACGGGAAAGACAAATGCTTTCCTAGGCGCAGGGCAATCATaGATTAATGAACACAGGGAG | + |
|
Preference number: 2 (lower is better) Translates to: QFLGRQMLYKTGKTNAFLGAGQS*INEHRE Trigger: CTCCCTGTGTTCATTAATTCATGATTGCCCTGCGCC...TAGGAAAGCATTTGTCTTTCCCGTTTTATATAGCATTTGCCTTCCTAAGAACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000228198.2 |
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| 3UTR-3UTR TCA 90 bp | AAGCCCCCAAATCTGTTTATACCTTTACCTTATGTTAGGTCTTACACAGCAAAAGGCGCAGGGCAATCATaGATTAATGAACACAGGGAG | + |
|
Preference number: 2 (lower is better) Translates to: KPPNLFIPLPYVRSYTAKGAGQS*INEHRE Trigger: CTCCCTGTGTTCATTAATTCATGATTGCCCTGCGCC...TTTTGCTGTGTAAGACCTAACATAAGGTAAAGGTATAAACAGATTTGGGGGCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000228198.2 |
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| 3UTR-3UTR GCA 90 bp | CAGTTCTTAGGAAGGCAAATGCTATATAAAACGGGAAAGACAAATGCTTTCCTAACAACAGTGAGAATGTaGAGAAGACCCCAGGGGAGA | + |
|
Preference number: 2 (lower is better) Translates to: QFLGRQMLYKTGKTNAFLTTVRM*RRPQGR Trigger: TCTCCCCTGGGGTCTTCTGCACATTCTCACTGTTGT...TAGGAAAGCATTTGTCTTTCCCGTTTTATATAGCATTTGCCTTCCTAAGAACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000228198.2 |
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| 3UTR-3UTR TCA 90 bp | CAAGCTGACTCAAACAAATCAAGAAAAGGGGTAAGAGTACTTCACATGGGTAATCAACTACTGAAGTCATaGATGGGAAGAACTGTACTC | + |
|
Preference number: 2 (lower is better) Translates to: QADSNKSRKGVRVLHMGNQLLKS*MGRTVL Trigger: GAGTACAGTTCTTCCCATTCATGACTTCAGTAGTTG...ATTACCCATGTGAAGTACTCTTACCCCTTTTCTTGATTTGTTTGAGTCAGCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000228198.2 |
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| 3UTR-3UTR TCA 90 bp | CAAGCTGACTCAAACAAATCAAGAAAAGGGGTAAGAGTACTTCACATGGGTAATGCAAAACTTACAGGGTaGGACTTAACGAAAGTACTA | + |
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Preference number: 2 (lower is better) Translates to: QADSNKSRKGVRVLHMGNAKLTG*DLTKVL Trigger: TAGTACTTTCGTTAAGTCTCACCCTGTAAGTTTTGC...ATTACCCATGTGAAGTACTCTTACCCCTTTTCTTGATTTGTTTGAGTCAGCTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000228198.2 |
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| 3UTR TCA 72 bp | ATTAATGAACACAGGGAGGGTAAGGCGGGACAACAGTaGGAATGTGCAGAAGACCCCAGGGGAGATGACCTG | + |
|
Preference number: 3 (lower is better) Translates to: INEHREGKAGQQ*ECAEDPRGDDL Trigger: CAGGTCATCTCCCCTGGGGTCTTCTGCACATTCTCACTGTTGTCCCGCCTTACCCTCCCTGTGTTCATTAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 8 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000227536.2 ENSMUST00000228198.2 ENSMUST00000228232.2 ENSMUST00000228748.2 |
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| 3UTR TCA 72 bp | ACAACAGTGAGAATGTGCAGAAGACCCCAGGGGAGATaGCCTGGTGTTACTTTCATCTCCCACAAACGCCTA | + |
|
Preference number: 3 (lower is better) Translates to: TTVRMCRRPQGR*PGVTFISHKRL Trigger: TAGGCGTTTGTGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCACATTCTCACTGTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 8 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000227536.2 ENSMUST00000228198.2 ENSMUST00000228232.2 ENSMUST00000228748.2 |
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| 3UTR TCA 72 bp | CATGGTTACATTCGTGTTGTAACAGTCCCACTCACGTaGGGGAAAACACACACCTCTAATGCAAAGCTGCTC | + |
|
Preference number: 3 (lower is better) Translates to: HGYIRVVTVPLT*GKTHTSNAKLL Trigger: GAGCAGCTTTGCATTAGAGGTGTGTGTTTTCCCTCACGTGAGTGGGACTGTTACAACACGAATGTAACCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000228198.2 ENSMUST00000228748.2 |
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| 3UTR-3UTR CAA 90 bp | AAGCCCCCAAATCTGTTTATACCTTTACCTTATGTTAGGTCTTACACAGCAAAAAATGCAAAGCTGCTCTaGGGGTTACAAGTAAATGAG | + |
|
Preference number: 3 (lower is better) Translates to: KPPNLFIPLPYVRSYTAKNAKLL*GLQVNE Trigger: CTCATTTACTTGTAACCCCAAGAGCAGCTTTGCATT...TTTTGCTGTGTAAGACCTAACATAAGGTAAAGGTATAAACAGATTTGGGGGCTT 39% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000228198.2 |
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| 3UTR-3UTR CAA 90 bp | TTACCTTATGTTAGGTCTTACACAGCAAAATGTTCCAAGCTGACTCAAACAAATAATGCAAAGCTGCTCTaGGGGTTACAAGTAAATGAG | + |
|
Preference number: 3 (lower is better) Translates to: LPYVRSYTAKCSKLTQTNNAKLL*GLQVNE Trigger: CTCATTTACTTGTAACCCCAAGAGCAGCTTTGCATT...ATTTGTTTGAGTCAGCTTGGAACATTTTGCTGTGTAAGACCTAACATAAGGTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000228198.2 |
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| 3UTR-3UTR CAA 90 bp | AAGCCCCCAAATCTGTTTATACCTTTACCTTATGTTAGGTCTTACACAGCAAAAAAATGCTTTCCTATTTaGAAACTTTTGAGGCACAGG | + |
|
Preference number: 3 (lower is better) Translates to: KPPNLFIPLPYVRSYTAKKCFPI*KLLRHR Trigger: CCTGTGCCTCAAAAGTTTCAAAATAGGAAAGCATTT...TTTTGCTGTGTAAGACCTAACATAAGGTAAAGGTATAAACAGATTTGGGGGCTT 37% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000228198.2 |
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| CDS-3UTR TCA 90 bp | GTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCACAAACGCATCTCTACTGGGGATaGGAAGGACAAGTCTGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: VQKTPGEMTWCYFHLPQTHLYWG*EGQVCL Trigger: CAAGCAGACTTGTCCTTCTCATCCCCAGTAGAGATG...CGTTTGTGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227536.2 |
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| CDS-3UTR TCA 90 bp | GAATGTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCACACATCTCTACTGGGGATaGGAAGGACAAGTCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: ECAEDPRGDDLVLLSSPTHLYWG*EGQVCL Trigger: CAAGCAGACTTGTCCTTCTCATCCCCAGTAGAGATG...TGTGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCACATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227536.2 |
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| CDS-3UTR TCA 90 bp | GAGAATGTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCACATCTCTACTGGGGATaGGAAGGACAAGTCTGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: ENVQKTPGEMTWCYFHLPHLYWG*EGQVCL Trigger: CAAGCAGACTTGTCCTTCTCATCCCCAGTAGAGATG...TGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCACATTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227536.2 |
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| CDS-3UTR CCA 90 bp | ATGAACACAGGGAGGGTAAGGCGGGACAACAGTGAGAATGTGCAGAAGACCCCATCAATTTTCCAGACTTaGAAGAAGATCCCCTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: MNTGRVRRDNSENVQKTPSIFQT*KKIPFV Trigger: GACAAAGGGGATCTTCTTCCAAGTCTGGAAAATTGA...TGGGGTCTTCTGCACATTCTCACTGTTGTCCCGCCTTACCCTCCCTGTGTTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 8 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000227536.2 ENSMUST00000228198.2 ENSMUST00000228232.2 ENSMUST00000228748.2 |
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| CDS-3UTR CCA 90 bp | GAGAATGTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCATCAATTTTCCAGACTTaGAAGAAGATCCCCTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: ENVQKTPGEMTWCYFHLPSIFQT*KKIPFV Trigger: GACAAAGGGGATCTTCTTCCAAGTCTGGAAAATTGA...TGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCACATTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 8 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000227536.2 ENSMUST00000228198.2 ENSMUST00000228232.2 ENSMUST00000228748.2 |
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| CDS-3UTR CCA 90 bp | GAATGTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCACATCAATTTTCCAGACTTaGAAGAAGATCCCCTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: ECAEDPRGDDLVLLSSPTSIFQT*KKIPFV Trigger: GACAAAGGGGATCTTCTTCCAAGTCTGGAAAATTGA...TGTGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCACATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 8 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000227536.2 ENSMUST00000228198.2 ENSMUST00000228232.2 ENSMUST00000228748.2 |
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| CDS-3UTR GCA 90 bp | GAATGTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCACAAAGGACAAGTCTGCTTaGTTGCTTTGTTCTTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: ECAEDPRGDDLVLLSSPTKDKSA*LLCSFS Trigger: TGAAAAAGAACAAAGCAAGCAAGCAGACTTGTCCTT...TGTGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCACATTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227536.2 |
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| CDS-3UTR GCA 90 bp | ATGAACACAGGGAGGGTAAGGCGGGACAACAGTGAGAATGTGCAGAAGACCCCATTCTTCATCTCTGCTTaGTTGCTTTGTTCTTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: MNTGRVRRDNSENVQKTPFFISA*LLCSFS Trigger: TGAAAAAGAACAAAGCAAGCAAGCAGAGATGAAGAA...TGGGGTCTTCTGCACATTCTCACTGTTGTCCCGCCTTACCCTCCCTGTGTTCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227458.2 |
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| CDS-3UTR GCA 90 bp | ATGAACACAGGGAGGGTAAGGCGGGACAACAGTGAGAATGTGCAGAAGACCCCATTCATTCTTCATCTCTaGTTGCTTGCTTTGTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: MNTGRVRRDNSENVQKTPFILHL*LLALFF Trigger: AAAGAACAAAGCAAGCAAGCAGAGATGAAGAATGAA...TGGGGTCTTCTGCACATTCTCACTGTTGTCCCGCCTTACCCTCCCTGTGTTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227458.2 |
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| CDS-3UTR CCA 90 bp | CTAATTGAACCCACCCCAGCATTTTGTACACACCAGCTTCTAACAGCATATTTATCAATTTTCCAGACTTaGAAGAAGATCCCCTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: LIEPTPAFCTHQLLTAYLSIFQT*KKIPFV Trigger: GACAAAGGGGATCTTCTTCCAAGTCTGGAAAATTGA...TAAATATGCTGTTAGAAGCTGGTGTGTACAAAATGCTGGGGTGGGTTCAATTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 |
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| CDS-3UTR GCA 90 bp | CTAATTGAACCCACCCCAGCATTTTGTACACACCAGCTTCTAACAGCATATTTAAAGGACAAGTCTGCTTaGTTGCTTTGTTCTTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: LIEPTPAFCTHQLLTAYLKDKSA*LLCSFS Trigger: TGAAAAAGAACAAAGCAAGCAAGCAGACTTGTCCTT...TAAATATGCTGTTAGAAGCTGGTGTGTACAAAATGCTGGGGTGGGTTCAATTAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 |
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| CDS-3UTR CCA 90 bp | AAGCCCCCAAATCTGTTTATACCTTTACCTTATGTTAGGTCTTACACAGCAAAATCAATTTTCCAGACTTaGAAGAAGATCCCCTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: KPPNLFIPLPYVRSYTAKSIFQT*KKIPFV Trigger: GACAAAGGGGATCTTCTTCCAAGTCTGGAAAATTGA...TTTTGCTGTGTAAGACCTAACATAAGGTAAAGGTATAAACAGATTTGGGGGCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000228198.2 |
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| 3UTR CAA 72 bp | TGCAGCTGTATGCTAGATATACACAACAGGGTCTTTTaGAGAAGTAGAAAGTCTGTGTGCATAAAAGATTTG | + |
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Preference number: 4 (lower is better) Translates to: CSCMLDIHNRVF*RSRKSVCIKDL Trigger: CAAATCTTTTATGCACACAGACTTTCTACTTCTCAAAAAGACCCTGTTGTGTATATCTAGCATACAGCTGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000228198.2 |
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| CDS-3UTR GCA 90 bp | TTACCTTATGTTAGGTCTTACACAGCAAAATGTTCCAAGCTGACTCAAACAAATAAGGACAAGTCTGCTTaGTTGCTTTGTTCTTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: LPYVRSYTAKCSKLTQTNKDKSA*LLCSFS Trigger: TGAAAAAGAACAAAGCAAGCAAGCAGACTTGTCCTT...ATTTGTTTGAGTCAGCTTGGAACATTTTGCTGTGTAAGACCTAACATAAGGTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 |
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| CDS-3UTR CAA 90 bp | ATGAACACAGGGAGGGTAAGGCGGGACAACAGTGAGAATGTGCAGAAGACCCCAGGAAGAAGATCCCCTTaGTCCACTCTTCGAATTGAA | + |
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Preference number: 5 (lower is better) Translates to: MNTGRVRRDNSENVQKTPGRRSP*STLRIE Trigger: TTCAATTCGAAGAGTGGACAAAGGGGATCTTCTTCC...TGGGGTCTTCTGCACATTCTCACTGTTGTCCCGCCTTACCCTCCCTGTGTTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 8 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000227536.2 ENSMUST00000228198.2 ENSMUST00000228232.2 ENSMUST00000228748.2 |
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| CDS-3UTR CAA 90 bp | GTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCACAAACGGGAAGAAGATCCCCTTaGTCCACTCTTCGAATTGAA | + |
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Preference number: 5 (lower is better) Translates to: VQKTPGEMTWCYFHLPQTGRRSP*STLRIE Trigger: TTCAATTCGAAGAGTGGACAAAGGGGATCTTCTTCC...CGTTTGTGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 8 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000227536.2 ENSMUST00000228198.2 ENSMUST00000228232.2 ENSMUST00000228748.2 |
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| CDS-3UTR CAA 90 bp | TCCCACTCACGTGAGGGAAAACACACACCTCTAATGCAAAGCTGCTCTTGGGGTGGAAGAAGATCCCCTTaGTCCACTCTTCGAATTGAA | + |
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Preference number: 5 (lower is better) Translates to: SHSREGKHTPLMQSCSWGGRRSP*STLRIE Trigger: TTCAATTCGAAGAGTGGACAAAGGGGATCTTCTTCC...ACCCCAAGAGCAGCTTTGCATTAGAGGTGTGTGTTTTCCCTCACGTGAGTGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 6 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000228198.2 ENSMUST00000228748.2 |
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| CDS-3UTR CAA 90 bp | GAGAATGTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCAGGAAGAAGATCCCCTTaGTCCACTCTTCGAATTGAA | + |
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Preference number: 5 (lower is better) Translates to: ENVQKTPGEMTWCYFHLPGRRSP*STLRIE Trigger: TTCAATTCGAAGAGTGGACAAAGGGGATCTTCTTCC...TGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCACATTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 8 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000227536.2 ENSMUST00000228198.2 ENSMUST00000228232.2 ENSMUST00000228748.2 |
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| CDS-3UTR CAA 90 bp | GTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCACAAACGGAAGGACAAGTCTGCTaGCTTGCTTTGTTCTTTTTC | + |
|
Preference number: 5 (lower is better) Translates to: VQKTPGEMTWCYFHLPQTEGQVC*LALFFF Trigger: GAAAAAGAACAAAGCAAGCAAGCAGACTTGTCCTTC...CGTTTGTGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227536.2 |
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| CDS-3UTR CAA 90 bp | GTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCACAAACGTTCAATTTTCCAGACTaGGAAGAAGATCCCCTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: VQKTPGEMTWCYFHLPQTFNFPD*EEDPLC Trigger: ACAAAGGGGATCTTCTTCCAAGTCTGGAAAATTGAA...CGTTTGTGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 8 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000227536.2 ENSMUST00000228198.2 ENSMUST00000228232.2 ENSMUST00000228748.2 |
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| CDS-3UTR CAA 90 bp | GAGAATGTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCAGAAGGACAAGTCTGCTaGCTTGCTTTGTTCTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: ENVQKTPGEMTWCYFHLPEGQVC*LALFFF Trigger: GAAAAAGAACAAAGCAAGCAAGCAGACTTGTCCTTC...TGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCACATTCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227536.2 |
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| CDS-3UTR CAA 90 bp | TGTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCACAAACGAAGGACAAGTCTGCTaGCTTGCTTTGTTCTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: CAEDPRGDDLVLLSSPTNEGQVC*LALFFF Trigger: GAAAAAGAACAAAGCAAGCAAGCAGACTTGTCCTTC...GTTTGTGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227536.2 |
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| CDS-3UTR CAA 90 bp | GAGAATGTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCATTCAATTTTCCAGACTaGGAAGAAGATCCCCTTTGT | + |
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Preference number: 5 (lower is better) Translates to: ENVQKTPGEMTWCYFHLPFNFPD*EEDPLC Trigger: ACAAAGGGGATCTTCTTCCAAGTCTGGAAAATTGAA...TGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCACATTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 8 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000227536.2 ENSMUST00000228198.2 ENSMUST00000228232.2 ENSMUST00000228748.2 |
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| CDS-3UTR CAA 90 bp | TGTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCACAAACTTCAATTTTCCAGACTaGGAAGAAGATCCCCTTTGT | + |
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Preference number: 5 (lower is better) Translates to: CAEDPRGDDLVLLSSPTNFNFPD*EEDPLC Trigger: ACAAAGGGGATCTTCTTCCAAGTCTGGAAAATTGAA...GTTTGTGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 8 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227458.2 ENSMUST00000227536.2 ENSMUST00000228198.2 ENSMUST00000228232.2 ENSMUST00000228748.2 |
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| CDS-3UTR CAA 90 bp | GTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCACAAACGGACAAGTCTGCTTGCTaGCTTTGTTCTTTTTCAATT | + |
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Preference number: 5 (lower is better) Translates to: VQKTPGEMTWCYFHLPQTDKSAC*LCSFSI Trigger: AATTGAAAAAGAACAAAGCAAGCAAGCAGACTTGTC...CGTTTGTGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227536.2 |
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| CDS-3UTR CAA 90 bp | GAGAATGTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCAGACAAGTCTGCTTGCTaGCTTTGTTCTTTTTCAATT | + |
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Preference number: 5 (lower is better) Translates to: ENVQKTPGEMTWCYFHLPDKSAC*LCSFSI Trigger: AATTGAAAAAGAACAAAGCAAGCAAGCAGACTTGTC...TGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCACATTCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000227536.2 |
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| CDS-3UTR CAA 90 bp | TGTGCAGAAGACCCCAGGGGAGATGACCTGGTGTTACTTTCATCTCCCACAAACATTCTTCATCTCTGCTaGCTTGCTTTGTTCTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: CAEDPRGDDLVLLSSPTNILHLC*LALFFF Trigger: GAAAAAGAACAAAGCAAGCAAGCAGAGATGAAGAAT...GTTTGTGGGAGATGAAAGTAACACCAGGTCATCTCCCCTGGGGTCTTCTGCACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000227458.2 |
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| CDS-3UTR CAA 90 bp | CAAGCTGACTCAAACAAATCAAGAAAAGGGGTAAGAGTACTTCACATGGGTAATGGAAGAAGATCCCCTTaGTCCACTCTTCGAATTGAA | + |
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Preference number: 5 (lower is better) Translates to: QADSNKSRKGVRVLHMGNGRRSP*STLRIE Trigger: TTCAATTCGAAGAGTGGACAAAGGGGATCTTCTTCC...ATTACCCATGTGAAGTACTCTTACCCCTTTTCTTGATTTGTTTGAGTCAGCTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000228198.2 |
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| CDS-3UTR CAA 90 bp | CTAATTGAACCCACCCCAGCATTTTGTACACACCAGCTTCTAACAGCATATTTAGACAAGTCTGCTTGCTaGCTTTGTTCTTTTTCAATT | + |
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Preference number: 5 (lower is better) Translates to: LIEPTPAFCTHQLLTAYLDKSAC*LCSFSI Trigger: AATTGAAAAAGAACAAAGCAAGCAAGCAGACTTGTC...TAAATATGCTGTTAGAAGCTGGTGTGTACAAAATGCTGGGGTGGGTTCAATTAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 |
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| CDS-3UTR CAA 90 bp | AAGCCCCCAAATCTGTTTATACCTTTACCTTATGTTAGGTCTTACACAGCAAAATTCAATTTTCCAGACTaGGAAGAAGATCCCCTTTGT | + |
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Preference number: 5 (lower is better) Translates to: KPPNLFIPLPYVRSYTAKFNFPD*EEDPLC Trigger: ACAAAGGGGATCTTCTTCCAAGTCTGGAAAATTGAA...TTTTGCTGTGTAAGACCTAACATAAGGTAAAGGTATAAACAGATTTGGGGGCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 4 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 ENSMUST00000228198.2 |
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| CDS-3UTR CAA 90 bp | TTACCTTATGTTAGGTCTTACACAGCAAAATGTTCCAAGCTGACTCAAACAAATGACAAGTCTGCTTGCTaGCTTTGTTCTTTTTCAATT | + |
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Preference number: 5 (lower is better) Translates to: LPYVRSYTAKCSKLTQTNDKSAC*LCSFSI Trigger: AATTGAAAAAGAACAAAGCAAGCAAGCAGACTTGTC...ATTTGTTTGAGTCAGCTTGGAACATTTTGCTGTGTAAGACCTAACATAAGGTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000111610.12 ENSMUST00000164655.2 ENSMUST00000227242.2 |
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