Pregenerated sensors for HNRNPAB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020358Ensembl transcript IDs: ENSMUST00000074669.10, ENSMUST00000101249.9, ENSMUST00000109103.4
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACTTGGGAGGCAGAGCCAGGTGGATTTCTGAGTTCAAGGCCAGCCTaGTCTACAGAGTTCCAGGATAACCTAACCAGGGCTACAGAGAAA | + |
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Preference number: 1 (lower is better) Translates to: TWEAEPGGFLSSRPA*STEFQDNLTRATEK Trigger: TTTCTCTGTAGCCCTGGTTAGGTTATCCTGGAACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGGCTCTGCCTCCCAAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| 3UTR GCA 90 bp | GCTACCAAGGATCCCTTCCTATTCCTGCTTGTTAGCCACCCCTACTaGGTTTTGGAATTGATACATTTCTTAGAGGGTTCTATGTGTACA | + |
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Preference number: 1 (lower is better) Translates to: ATKDPFLFLLVSHPY*VLELIHFLEGSMCT Trigger: TGTACACATAGAACCCTCTAAGAAATGTATCAATTCCAAAACGCAGTAGGGGTGGCTAACAAGCAGGAATAGGAAGGGATCCTTGGTAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| 3UTR TCA 90 bp | TTGGAATTGATACATTTCTTAGAGGGTTCTATGTGTACAGAACAGTaGGTGGTGACTGGGCTTACAAAGGGACCATCTGTGCTAGGGAAA | + |
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Preference number: 1 (lower is better) Translates to: LELIHFLEGSMCTEQ*VVTGLTKGPSVLGK Trigger: TTTCCCTAGCACAGATGGTCCCTTTGTAAGCCCAGTCACCACTCACTGTTCTGTACACATAGAACCCTCTAAGAAATGTATCAATTCCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| 3UTR TCA 90 bp | TGGCCCCACCTCCATCAGCAGATCCCCAACATTTCAACTTGTACTTaGCTGAAACTAAGAACATGGAATATATATAATACATGGCAAGAT | + |
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Preference number: 1 (lower is better) Translates to: WPHLHQQIPNISTCT*LKLRTWNIYNTWQD Trigger: ATCTTGCCATGTATTATATATATTCCATGTTCTTAGTTTCAGTCAAGTACAAGTTGAAATGTTGGGGATCTGCTGATGGAGGTGGGGCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| 3UTR-3UTR TCA 90 bp | GTTCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTTGTGCCAGGCCTGTCTaGCTCCAAAGCCCCTGCTGC | + |
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Preference number: 2 (lower is better) Translates to: VHSASKQSVCGRHSAAPACARPV*LQSPCC Trigger: GCAGCAGGGGCTTTGGAGTCAGACAGGCCTGGCACA...AGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGAAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| 3UTR-3UTR GCA 90 bp | GTTCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTTCCACAGGTCCAGGCTaGAGAGCGGCAACAGGAAAT | + |
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Preference number: 2 (lower is better) Translates to: VHSASKQSVCGRHSAAPASTGPG*RAATGN Trigger: ATTTCCTGTTGCCGCTCTGCAGCCTGGACCTGTGGA...AGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGAAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 |
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| 3UTR-3UTR TCA 90 bp | GCTACCAAGGATCCCTTCCTATTCCTGCTTGTTAGCCACCCCTACTGCGTTTTGAAAAGTAAGAAGTTGTaGAACCCTGAGGATCAAGCA | + |
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Preference number: 2 (lower is better) Translates to: ATKDPFLFLLVSHPYCVLKSKKL*NPEDQA Trigger: TGCTTGATCCTCAGGGTTTCACAACTTCTTACTTTT...CAAAACGCAGTAGGGGTGGCTAACAAGCAGGAATAGGAAGGGATCCTTGGTAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| 3UTR CAA 90 bp | TGTAGTTATTCTGATGACCACCACGTCGCTGGCTCTTTCCGTAATTaGTACTACCCTGACCTAGGAATAAGAACAACGTTGTGGCTACTA | + |
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Preference number: 2 (lower is better) Translates to: CSYSDDHHVAGSFRN*YYPDLGIRTTLWLL Trigger: TAGTAGCCACAACGTTGTTCTTATTCCTAGGTCAGGGTAGTACAAATTACGGAAAGAGCCAGCGACGTGGTGGTCATCAGAATAACTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| 3UTR CAA 90 bp | AAGGATCCCTTCCTATTCCTGCTTGTTAGCCACCCCTACTGCGTTTaGGAATTGATACATTTCTTAGAGGGTTCTATGTGTACAGAACAG | + |
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Preference number: 2 (lower is better) Translates to: KDPFLFLLVSHPYCV*ELIHFLEGSMCTEQ Trigger: CTGTTCTGTACACATAGAACCCTCTAAGAAATGTATCAATTCCAAAACGCAGTAGGGGTGGCTAACAAGCAGGAATAGGAAGGGATCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| 3UTR TCA 72 bp | TCATTCAGTAGCTCCAGTGCCTGTGCCAGGCCTGTCTaGCTCCAAAGCCCCTGCTGCCAATGGCCCCTGCAC | + |
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Preference number: 3 (lower is better) Translates to: SFSSSSACARPV*LQSPCCQWPLH Trigger: GTGCAGGGGCCATTGGCAGCAGGGGCTTTGGAGTCAGACAGGCCTGGCACAGGCACTGGAGCTACTGAATGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| 3UTR CCA 72 bp | GCAGAGCCAGGTGGATTTCTGAGTTCAAGGCCAGCCTaGTCTACAGAGTTCCAGGATAACCTAACCAGGGCT | + |
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Preference number: 3 (lower is better) Translates to: AEPGGFLSSRPA*STEFQDNLTRA Trigger: AGCCCTGGTTAGGTTATCCTGGAACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGGCTCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| 3UTR TCA 72 bp | ATACATTTCTTAGAGGGTTCTATGTGTACAGAACAGTaGGTGGTGACTGGGCTTACAAAGGGACCATCTGTG | + |
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Preference number: 3 (lower is better) Translates to: IHFLEGSMCTEQ*VVTGLTKGPSV Trigger: CACAGATGGTCCCTTTGTAAGCCCAGTCACCACTCACTGTTCTGTACACATAGAACCCTCTAAGAAATGTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| 3UTR GCA 72 bp | GATCCCTTCCTATTCCTGCTTGTTAGCCACCCCTACTaGGTTTTGGAATTGATACATTTCTTAGAGGGTTCT | + |
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Preference number: 3 (lower is better) Translates to: DPFLFLLVSHPY*VLELIHFLEGS Trigger: AGAACCCTCTAAGAAATGTATCAATTCCAAAACGCAGTAGGGGTGGCTAACAAGCAGGAATAGGAAGGGATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| 3UTR GCA 72 bp | CGTTGTGGCTACTACTTTAACTATACATTTACCCAGTaGCAGGCGCTTGCCACACATCCTCAGAATAAATTA | + |
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Preference number: 3 (lower is better) Translates to: RCGYYFNYTFTQ*QALATHPQNKL Trigger: TAATTTATTCTGAGGATGTGTGGCAAGCGCCTGGCACTGGGTAAATGTATAGTTAAAGTAGTAGCCACAACG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| 3UTR GCA 72 bp | ACATGGAATATATATAATACATGGCAAGATGGTCTCTaGTATGGAGACAATGGGCACAAAAGGGCAGCTAAA | + |
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Preference number: 3 (lower is better) Translates to: TWNIYNTWQDGL*YGDNGHKRAAK Trigger: TTTAGCTGCCCTTTTGTGCCCATTGTCTCCATAGCAGAGACCATCTTGCCATGTATTATATATATTCCATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| 3UTR TCA 72 bp | CTCCATCAGCAGATCCCCAACATTTCAACTTGTACTTaGCTGAAACTAAGAACATGGAATATATATAATACA | + |
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Preference number: 3 (lower is better) Translates to: LHQQIPNISTCT*LKLRTWNIYNT Trigger: TGTATTATATATATTCCATGTTCTTAGTTTCAGTCAAGTACAAGTTGAAATGTTGGGGATCTGCTGATGGAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| CDS-3UTR CCA 90 bp | TCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCCCTCCGCGCCGTTCTaGTTCCCGCTCGGTGCGGTC | + |
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Preference number: 4 (lower is better) Translates to: SLRVQTKRVRSSLGRSCCPSAPF*FPLGAV Trigger: GACCGCACCGAGCGGGAACCAGAACGGCGCGGAGGG...GCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR CCA 90 bp | GTTCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTCCCTCCGCGCCGTTCTaGTTCCCGCTCGGTGCGGTC | + |
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Preference number: 4 (lower is better) Translates to: VHSASKQSVCGRHSAAPAPSAPF*FPLGAV Trigger: GACCGCACCGAGCGGGAACCAGAACGGCGCGGAGGG...AGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGAAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR GCA 90 bp | GCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCTCTCAGGTCGTCTCCATGGGCTaGTCCTCAGCCGCGTCCGAC | + |
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Preference number: 4 (lower is better) Translates to: ASKQSVCGRHSAAPAASQVVSMG*SSAASD Trigger: GTCGGACGCGGCTGAGGAGCAGCCCATGGAGACGAC...CTGAGAGGCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| CDS-3UTR CCA 90 bp | GTTCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTCGCCCGTCGTCTCCATaGGCTGCTCCTCAGCCGCGT | + |
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Preference number: 4 (lower is better) Translates to: VHSASKQSVCGRHSAAPARPSSP*AAPQPR Trigger: ACGCGGCTGAGGAGCAGCCCATGGAGACGACGGGCG...AGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGAAC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR GCA 90 bp | GTTCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGTCGTCTCCATGGGCTaGTCCTCAGCCGCGTCCGAC | + |
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Preference number: 4 (lower is better) Translates to: VHSASKQSVCGRHSAAPAVVSMG*SSAASD Trigger: GTCGGACGCGGCTGAGGAGCAGCCCATGGAGACGAC...AGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGAAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR GCA 90 bp | GCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCTCTCAGCTCGGTTCCCTCGATTaGGATTTCCTCTGCCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: ASKQSVCGRHSAAPAASQLGSLD*DFLCPQ Trigger: CTGGGGGCAGAGGAAATCGCAATCGAGGGAACCGAG...CTGAGAGGCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| CDS-3UTR GCA 90 bp | GTTCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTCTCGGTTCCCTCGATTaGGATTTCCTCTGCCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: VHSASKQSVCGRHSAAPALGSLD*DFLCPQ Trigger: CTGGGGGCAGAGGAAATCGCAATCGAGGGAACCGAG...AGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGAAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR GCA 90 bp | GTTCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTTCTGACCTCCACCACTaGCTCGGTTCCCTCGATTGC | + |
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Preference number: 4 (lower is better) Translates to: VHSASKQSVCGRHSAAPASDLHH*LGSLDC Trigger: GCAATCGAGGGAACCGAGGCAGTGGTGGAGGTCAGA...AGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGAAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR TCA 90 bp | TCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCTGGGCTGGGCAACCTTaGTTTCACACTTGCTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: SLRVQTKRVRSSLGRSCCWAGQP*FHTCFH Trigger: GTGGAAGCAAGTGTGAAATCAAGGTTGCCCAGCCCA...GCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR TCA 90 bp | ACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCTCCATACTGCTGTTGCTaGTACACCTCTTTGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: TPRPNKACAVVTRPLLLPPYCCC*YTSLGW Trigger: CCAGCCCAAAGAGGTGTATCAGCAACAGCAGTATGG...AGGCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR TCA 90 bp | TCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCCATACTGCTGTTGCTaGTACACCTCTTTGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SLRVQTKRVRSSLGRSCCPYCCC*YTSLGW Trigger: CCAGCCCAAAGAGGTGTATCAGCAACAGCAGTATGG...GCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR GCA 90 bp | ACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCTGATTGCGATTTCCTCTaGCCCCAGAGCCATACTGCT | + |
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Preference number: 4 (lower is better) Translates to: TPRPNKACAVVTRPLLLPDCDFL*PQSHTA Trigger: AGCAGTATGGCTCTGGGGGCAGAGGAAATCGCAATC...AGGCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR CCA 90 bp | GCTGCAGAGCGGCAACAGGAAATAGACCCTCCTGATCTAGAACAGGGTAACCTGCGCCCGTCGTCTCCATaGGCTGCTCCTCAGCCGCGT | + |
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Preference number: 4 (lower is better) Translates to: AAERQQEIDPPDLEQGNLRPSSP*AAPQPR Trigger: ACGCGGCTGAGGAGCAGCCCATGGAGACGACGGGCG...CAGGTTACCCTGTTCTAGATCAGGAGGGTCTATTTCCTGTTGCCGCTCTGCAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 |
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| CDS-3UTR CCA 90 bp | GCTGCAGAGCGGCAACAGGAAATAGACCCTCCTGATCTAGAACAGGGTAACCTGCGTGTCCGTTCTCGGTaGCGCCCGTCGTCTCCATGG | + |
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Preference number: 4 (lower is better) Translates to: AAERQQEIDPPDLEQGNLRVRSR*RPSSPW Trigger: CCATGGAGACGACGGGCGCCACCGAGAACGGACACG...CAGGTTACCCTGTTCTAGATCAGGAGGGTCTATTTCCTGTTGCCGCTCTGCAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 |
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| CDS-3UTR TCA 90 bp | ACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCTGGCCGAAGTATTCTCTaGTCTTTTCCTCTGTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: TPRPNKACAVVTRPLLLPGRSIL*SFPLWL Trigger: AAGCCACAGAGGAAAAGATCAGAGAATACTTCGGCC...AGGCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR CCA 90 bp | GCTACCAAGGATCCCTTCCTATTCCTGCTTGTTAGCCACCCCTACTGCGTTTTGCGTGTCCGTTCTCGGTaGCGCCCGTCGTCTCCATGG | + |
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Preference number: 4 (lower is better) Translates to: ATKDPFLFLLVSHPYCVLRVRSR*RPSSPW Trigger: CCATGGAGACGACGGGCGCCACCGAGAACGGACACG...CAAAACGCAGTAGGGGTGGCTAACAAGCAGGAATAGGAAGGGATCCTTGGTAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| CDS-3UTR TCA 90 bp | GTTCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGGCCGAAGTATTCTCTaGTCTTTTCCTCTGTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: VHSASKQSVCGRHSAAPAGRSIL*SFPLWL Trigger: AAGCCACAGAGGAAAAGATCAGAGAATACTTCGGCC...AGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR GCA 90 bp | GCTGCAGAGCGGCAACAGGAAATAGACCCTCCTGATCTAGAACAGGGTAACCTGCCTGACCTCCACCACTaGCTCGGTTCCCTCGATTGC | + |
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Preference number: 4 (lower is better) Translates to: AAERQQEIDPPDLEQGNLPDLHH*LGSLDC Trigger: GCAATCGAGGGAACCGAGGCAGTGGTGGAGGTCAGG...CAGGTTACCCTGTTCTAGATCAGGAGGGTCTATTTCCTGTTGCCGCTCTGCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| CDS-3UTR CCA 90 bp | CAGTGCCAGGCGCTTGCCACACATCCTCAGAATAAATTAACACTACACAGCAACCGCCCGTCGTCTCCATaGGCTGCTCCTCAGCCGCGT | + |
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Preference number: 4 (lower is better) Translates to: QCQALATHPQNKLTLHSNRPSSP*AAPQPR Trigger: ACGCGGCTGAGGAGCAGCCCATGGAGACGACGGGCG...GTTGCTGTGTAGTGTTAATTTATTCTGAGGATGTGTGGCAAGCGCCTGGCACTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| CDS-3UTR CCA 90 bp | GCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCTCTCAGCTATTGGAAGCTCAATaGCCTCAATCTCCCCAAACT | + |
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Preference number: 4 (lower is better) Translates to: ASKQSVCGRHSAAPAASQLLEAQ*PQSPQT Trigger: AGTTTGGGGAGATTGAGGCCATTGAGCTTCCAATAG...CTGAGAGGCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| CDS-3UTR CCA 90 bp | TCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCTATTGGAAGCTCAATaGCCTCAATCTCCCCAAACT | + |
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Preference number: 4 (lower is better) Translates to: SLRVQTKRVRSSLGRSCCLLEAQ*PQSPQT Trigger: AGTTTGGGGAGATTGAGGCCATTGAGCTTCCAATAG...GCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR CCA 90 bp | TCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCAACTTGGGATCTATTaGAAGCTCAATGGCCTCAAT | + |
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Preference number: 4 (lower is better) Translates to: SLRVQTKRVRSSLGRSCCQLGIY*KLNGLN Trigger: ATTGAGGCCATTGAGCTTCCAATAGATCCCAAGTTG...GCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR TCA 90 bp | ACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCTCACACTTGCTTCCACTaGCAGTATGAAATTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: TPRPNKACAVVTRPLLLPHTCFH*QYEISS Trigger: AGAAGAAATTTCATACTGTCAGTGGAAGCAAGTGTG...AGGCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR CCA 90 bp | CTAAAAAGATCAGATGGGATAACTAAAGGACCTCTGCTTTGCTACAGGAGACCTCCCTCCGCGCCGTTCTaGTTCCCGCTCGGTGCGGTC | + |
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Preference number: 4 (lower is better) Translates to: LKRSDGITKGPLLCYRRPPSAPF*FPLGAV Trigger: GACCGCACCGAGCGGGAACCAGAACGGCGCGGAGGG...AGGTCTCCTGTAGCAAAGCAGAGGTCCTTTAGTTATCCCATCTGATCTTTTTAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| CDS-3UTR CCA 90 bp | GTTCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTCAACTTGGGATCTATTaGAAGCTCAATGGCCTCAAT | + |
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Preference number: 4 (lower is better) Translates to: VHSASKQSVCGRHSAAPAQLGIY*KLNGLN Trigger: ATTGAGGCCATTGAGCTTCCAATAGATCCCAAGTTG...AGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR GCA 90 bp | GCTGCAGAGCGGCAACAGGAAATAGACCCTCCTGATCTAGAACAGGGTAACCTGGATTGCGATTTCCTCTaGCCCCAGAGCCATACTGCT | + |
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Preference number: 4 (lower is better) Translates to: AAERQQEIDPPDLEQGNLDCDFL*PQSHTA Trigger: AGCAGTATGGCTCTGGGGGCAGAGGAAATCGCAATC...CAGGTTACCCTGTTCTAGATCAGGAGGGTCTATTTCCTGTTGCCGCTCTGCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 |
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| CDS-3UTR GCA 90 bp | AAGCTACCAAGGATCCCTTCCTATTCCTGCTTGTTAGCCACCCCTACTGCGTTTCTCGGTTCCCTCGATTaGGATTTCCTCTGCCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: KLPRIPSYSCLLATPTAFLGSLD*DFLCPQ Trigger: CTGGGGGCAGAGGAAATCGCAATCGAGGGAACCGAG...AAACGCAGTAGGGGTGGCTAACAAGCAGGAATAGGAAGGGATCCTTGGTAGCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| CDS-3UTR GCA 90 bp | GTGGCTACTACTTTAACTATACATTTACCCAGTGCCAGGCGCTTGCCACACATCTCTGACCTCCACCACTaGCTCGGTTCCCTCGATTGC | + |
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Preference number: 4 (lower is better) Translates to: VATTLTIHLPSARRLPHISDLHH*LGSLDC Trigger: GCAATCGAGGGAACCGAGGCAGTGGTGGAGGTCAGA...GATGTGTGGCAAGCGCCTGGCACTGGGTAAATGTATAGTTAAAGTAGTAGCCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| CDS-3UTR TCA 90 bp | GTGGCTACTACTTTAACTATACATTTACCCAGTGCCAGGCGCTTGCCACACATCTGGGCTGGGCAACCTTaGTTTCACACTTGCTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: VATTLTIHLPSARRLPHIWAGQP*FHTCFH Trigger: GTGGAAGCAAGTGTGAAATCAAGGTTGCCCAGCCCA...GATGTGTGGCAAGCGCCTGGCACTGGGTAAATGTATAGTTAAAGTAGTAGCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| CDS-3UTR TCA 90 bp | TTTACCCAGTGCCAGGCGCTTGCCACACATCCTCAGAATAAATTAACACTACACCCATACTGCTGTTGCTaGTACACCTCTTTGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: FTQCQALATHPQNKLTLHPYCCC*YTSLGW Trigger: CCAGCCCAAAGAGGTGTATCAGCAACAGCAGTATGG...GTGTAGTGTTAATTTATTCTGAGGATGTGTGGCAAGCGCCTGGCACTGGGTAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| CDS-3UTR GCA 90 bp | TTTACCCAGTGCCAGGCGCTTGCCACACATCCTCAGAATAAATTAACACTACACGATTGCGATTTCCTCTaGCCCCAGAGCCATACTGCT | + |
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Preference number: 4 (lower is better) Translates to: FTQCQALATHPQNKLTLHDCDFL*PQSHTA Trigger: AGCAGTATGGCTCTGGGGGCAGAGGAAATCGCAATC...GTGTAGTGTTAATTTATTCTGAGGATGTGTGGCAAGCGCCTGGCACTGGGTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| CDS-3UTR CCA 90 bp | GCTACCAAGGATCCCTTCCTATTCCTGCTTGTTAGCCACCCCTACTGCGTTTTGCTATTGGAAGCTCAATaGCCTCAATCTCCCCAAACT | + |
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Preference number: 4 (lower is better) Translates to: ATKDPFLFLLVSHPYCVLLLEAQ*PQSPQT Trigger: AGTTTGGGGAGATTGAGGCCATTGAGCTTCCAATAG...CAAAACGCAGTAGGGGTGGCTAACAAGCAGGAATAGGAAGGGATCCTTGGTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| CDS-3UTR TCA 90 bp | CTAAAAAGATCAGATGGGATAACTAAAGGACCTCTGCTTTGCTACAGGAGACCTTGGGCTGGGCAACCTTaGTTTCACACTTGCTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: LKRSDGITKGPLLCYRRPWAGQP*FHTCFH Trigger: GTGGAAGCAAGTGTGAAATCAAGGTTGCCCAGCCCA...AGGTCTCCTGTAGCAAAGCAGAGGTCCTTTAGTTATCCCATCTGATCTTTTTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| 3UTR CAA 72 bp | TCTGATGACCACCACGTCGCTGGCTCTTTCCGTAATTaGTACTACCCTGACCTAGGAATAAGAACAACGTTG | + |
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Preference number: 4 (lower is better) Translates to: SDDHHVAGSFRN*YYPDLGIRTTL Trigger: CAACGTTGTTCTTATTCCTAGGTCAGGGTAGTACAAATTACGGAAAGAGCCAGCGACGTGGTGGTCATCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| CDS-3UTR TCA 90 bp | AAGCTACCAAGGATCCCTTCCTATTCCTGCTTGTTAGCCACCCCTACTGCGTTTCACACTTGCTTCCACTaGCAGTATGAAATTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: KLPRIPSYSCLLATPTAFHTCFH*QYEISS Trigger: AGAAGAAATTTCATACTGTCAGTGGAAGCAAGTGTG...AAACGCAGTAGGGGTGGCTAACAAGCAGGAATAGGAAGGGATCCTTGGTAGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| CDS-3UTR TCA 90 bp | CTAAAAAGATCAGATGGGATAACTAAAGGACCTCTGCTTTGCTACAGGAGACCTGGCCGAAGTATTCTCTaGTCTTTTCCTCTGTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: LKRSDGITKGPLLCYRRPGRSIL*SFPLWL Trigger: AAGCCACAGAGGAAAAGATCAGAGAATACTTCGGCC...AGGTCTCCTGTAGCAAAGCAGAGGTCCTTTAGTTATCCCATCTGATCTTTTTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| 3UTR CAA 72 bp | GCCCCACCTCCATCAGCAGATCCCCAACATTTCAACTaGTACTTGACTGAAACTAAGAACATGGAATATATA | + |
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Preference number: 4 (lower is better) Translates to: APPPSADPQHFN*YLTETKNMEYI Trigger: TATATATTCCATGTTCTTAGTTTCAGTCAAGTACAAGTTGAAATGTTGGGGATCTGCTGATGGAGGTGGGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| 3UTR CAA 72 bp | TTCCTATTCCTGCTTGTTAGCCACCCCTACTGCGTTTaGGAATTGATACATTTCTTAGAGGGTTCTATGTGT | + |
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Preference number: 4 (lower is better) Translates to: FLFLLVSHPYCV*ELIHFLEGSMC Trigger: ACACATAGAACCCTCTAAGAAATGTATCAATTCCAAAACGCAGTAGGGGTGGCTAACAAGCAGGAATAGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| CDS GCA 90 bp | GGCGTTGATCTGGTCGCCCTCCGCGCCGTTCTGGTTCCCGCTCGGTaGGGTCGTGGTCCCGCCCCCAGACCCGGCCGAGGCCGCGGGGGC | + |
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Preference number: 5 (lower is better) Translates to: GVDLVALRAVLVPAR*GRGPAPRPGRGRGG Trigger: GCCCCCGCGGCCTCGGCCGGGTCTGGGGGCGGGACCACGACCGCACCGAGCGGGAACCAGAACGGCGCGGAGGGCGACCAGATCAACGCC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS CCA 90 bp | CGACCGGGGCCTCGCCTTCGGGGGCGGCCTCGTGTCCGTTCTCGGTaGCGCCCGTCGTCTCCATGGGCTGCTCCTCAGCCGCGTCCGACA | + |
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Preference number: 5 (lower is better) Translates to: RPGPRLRGRPRVRSR*RPSSPWAAPQPRPT Trigger: TGTCGGACGCGGCTGAGGAGCAGCCCATGGAGACGACGGGCGCCACCGAGAACGGACACGAGGCCGCCCCCGAAGGCGAGGCCCCGGTCG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR CAA 90 bp | ACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCTCCTCGGTTCCCTCGATaGCGATTTCCTCTGCCCCCA | + |
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Preference number: 5 (lower is better) Translates to: TPRPNKACAVVTRPLLLPPRFPR*RFPLPP Trigger: TGGGGGCAGAGGAAATCGCAATCGAGGGAACCGAGG...AGGCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS GCA 90 bp | CCGGCCCGTAGCCCTGCTGGTAGCCGTAGCCCTGGTTCCAGTAGTTaGCGTAGCCCTGATTCCAACTCTGACTCTGACCTCCACCACTGC | + |
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Preference number: 5 (lower is better) Translates to: PARSPAGSRSPGSSS*RSPDSNSDSDLHHC Trigger: GCAGTGGTGGAGGTCAGAGTCAGAGTTGGAATCAGGGCTACGGCAACTACTGGAACCAGGGCTACGGCTACCAGCAGGGCTACGGGCCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR CAA 90 bp | ACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCTTTGGGCTGGGCAACCTaGATTTCACACTTGCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: TPRPNKACAVVTRPLLLPLGWAT*ISHLLP Trigger: TGGAAGCAAGTGTGAAATCAAGGTTGCCCAGCCCAA...AGGCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR CAA 90 bp | GCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCTCTCAGTTGGGCTGGGCAACCTaGATTTCACACTTGCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: ASKQSVCGRHSAAPAASQLGWAT*ISHLLP Trigger: TGGAAGCAAGTGTGAAATCAAGGTTGCCCAGCCCAA...CTGAGAGGCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| CDS-3UTR CAA 90 bp | TCACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCAGAGCCATACTGCTGTaGCTGATACACCTCTTTGGG | + |
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Preference number: 5 (lower is better) Translates to: SLRVQTKRVRSSLGRSCCRAILL*LIHLFG Trigger: CCCAAAGAGGTGTATCAGCAACAGCAGTATGGCTCT...GCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR CAA 90 bp | ACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCTAGAGCCATACTGCTGTaGCTGATACACCTCTTTGGG | + |
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Preference number: 5 (lower is better) Translates to: TPRPNKACAVVTRPLLLPRAILL*LIHLFG Trigger: CCCAAAGAGGTGTATCAGCAACAGCAGTATGGCTCT...AGGCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS-3UTR CAA 90 bp | ACTCCGCGTCCAAACAAAGCGTGTGCGGTCGTCACTCGGCCGCTCCTGCTGCCTGGCTCTTTCCGTAATTaGTACTACCCTGACTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: TPRPNKACAVVTRPLLLPGSFRN*YYPDCS Trigger: ACTACAGTCAGGGTAGTACAAATTACGGAAAGAGCC...AGGCAGCAGGAGCGGCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109103.4 |
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| CDS-3UTR CAA 90 bp | GCTACCAAGGATCCCTTCCTATTCCTGCTTGTTAGCCACCCCTACTGCGTTTTGCCTCGGTTCCCTCGATaGCGATTTCCTCTGCCCCCA | + |
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Preference number: 5 (lower is better) Translates to: ATKDPFLFLLVSHPYCVLPRFPR*RFPLPP Trigger: TGGGGGCAGAGGAAATCGCAATCGAGGGAACCGAGG...CAAAACGCAGTAGGGGTGGCTAACAAGCAGGAATAGGAAGGGATCCTTGGTAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| CDS-3UTR CAA 90 bp | TGTAGTTATTCTGATGACCACCACGTCGCTGGCTCTTTCCGTAATTTGTACTACCCTCGGTTCCCTCGATaGCGATTTCCTCTGCCCCCA | + |
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Preference number: 5 (lower is better) Translates to: CSYSDDHHVAGSFRNLYYPRFPR*RFPLPP Trigger: TGGGGGCAGAGGAAATCGCAATCGAGGGAACCGAGG...GTAGTACAAATTACGGAAAGAGCCAGCGACGTGGTGGTCATCAGAATAACTACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101249.9 |
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| CDS-3UTR CAA 90 bp | GCAGATCCCCAACATTTCAACTTGTACTTGACTGAAACTAAGAACATGGAATATAGAGCCATACTGCTGTaGCTGATACACCTCTTTGGG | + |
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Preference number: 5 (lower is better) Translates to: ADPQHFNLYLTETKNMEYRAILL*LIHLFG Trigger: CCCAAAGAGGTGTATCAGCAACAGCAGTATGGCTCT...ATATTCCATGTTCTTAGTTTCAGTCAAGTACAAGTTGAAATGTTGGGGATCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074669.10 |
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| CDS GCA 72 bp | CTGGTCGCCCTCCGCGCCGTTCTGGTTCCCGCTCGGTaGGGTCGTGGTCCCGCCCCCAGACCCGGCCGAGGC | + |
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Preference number: 6 (lower is better) Translates to: LVALRAVLVPAR*GRGPAPRPGRG Trigger: GCCTCGGCCGGGTCTGGGGGCGGGACCACGACCGCACCGAGCGGGAACCAGAACGGCGCGGAGGGCGACCAG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS CCA 72 bp | CCTCGCCTTCGGGGGCGGCCTCGTGTCCGTTCTCGGTaGCGCCCGTCGTCTCCATGGGCTGCTCCTCAGCCG | + |
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Preference number: 6 (lower is better) Translates to: PRLRGRPRVRSR*RPSSPWAAPQP Trigger: CGGCTGAGGAGCAGCCCATGGAGACGACGGGCGCCACCGAGAACGGACACGAGGCCGCCCCCGAAGGCGAGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000074669.10 ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS GCA 72 bp | AGCCCTGCTGGTAGCCGTAGCCCTGGTTCCAGTAGTTaGCGTAGCCCTGATTCCAACTCTGACTCTGACCTC | + |
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Preference number: 6 (lower is better) Translates to: SPAGSRSPGSSS*RSPDSNSDSDL Trigger: GAGGTCAGAGTCAGAGTTGGAATCAGGGCTACGGCAACTACTGGAACCAGGGCTACGGCTACCAGCAGGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101249.9 ENSMUST00000109103.4 |
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| CDS CAA 72 bp | TCTGATGACCACCACGTCGCTGGCTCTTTCCGTAATTaGTACTACCCTGACTGTAGTCGTAGCCGGGGCCGT | + |
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Preference number: 6 (lower is better) Translates to: SDDHHVAGSFRN*YYPDCSRSRGR Trigger: ACGGCCCCGGCTACGACTACAGTCAGGGTAGTACAAATTACGGAAAGAGCCAGCGACGTGGTGGTCATCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109103.4 |
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| CDS CAA 90 bp | TGTAGTTATTCTGATGACCACCACGTCGCTGGCTCTTTCCGTAATTaGTACTACCCTGACTGTAGTCGTAGCCGGGGCCGTAGCCGTAAT | + |
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Preference number: 6 (lower is better) Translates to: CSYSDDHHVAGSFRN*YYPDCSRSRGRSRN Trigger: ATTACGGCTACGGCCCCGGCTACGACTACAGTCAGGGTAGTACAAATTACGGAAAGAGCCAGCGACGTGGTGGTCATCAGAATAACTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109103.4 |
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