RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HNRNPA0 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000007836

Ensembl transcript IDs: ENSMUST00000007980.7

Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TACAACAAAGTAAACTACCCTCCCGCCCAACCCCCACCCAGGTGTTaGTACAGAATCAGCAAGTTCACTCCCGCCCGCCCACCCGCCCCC +
Preference number: 1 (lower is better)
Translates to: YNKVNYPPAQPPPRC*YRISKFTPARPPAP
Trigger: GGGGGCGGGTGGGCGGGCGGGAGTGAACTTGCTGATTCTGTAGCAACACCTGGGTGGGGGTTGGGCGGGAGGGTAGTTTACTTTGTTGTA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
3UTR GCA 90 bp AATTGTCCTGAACAAGTAAGTTGGGTTTTTCTTAACCAACCGTCTTaGAGCTATACTGCCACTCTACCAGCAGATGGTGCTACATCCGTT +
Preference number: 1 (lower is better)
Translates to: NCPEQVSWVFLNQPS*SYTATLPADGATSV
Trigger: AACGGATGTAGCACCATCTGCTGGTAGAGTGGCAGTATAGCTGCAAGACGGTTGGTTAAGAAAAACCCAACTTACTTGTTCAGGACAATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
3UTR CCA 90 bp ACCAACCATGTCAAGATGATAAGCAAATCGCTTATTACAAAGAGATaGATGCACAGGACTAAACAGCCACATCCACCACTTCAGAAAGAT +
Preference number: 1 (lower is better)
Translates to: TNHVKMISKSLITKR*MHRTKQPHPPLQKD
Trigger: ATCTTTCTGAAGTGGTGGATGTGGCTGTTTAGTCCTGTGCATCCATCTCTTTGTAATAAGCGATTTGCTTATCATCTTGACATGGTTGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
3UTR CAA 90 bp TTACAACAAAGTAAACTACCCTCCCGCCCAACCCCCACCCAGGTGTaGCTACAGAATCAGCAAGTTCACTCCCGCCCGCCCACCCGCCCC +
Preference number: 2 (lower is better)
Translates to: LQQSKLPSRPTPTQV*LQNQQVHSRPPTRP
Trigger: GGGGCGGGTGGGCGGGCGGGAGTGAACTTGCTGATTCTGTAGCAACACCTGGGTGGGGGTTGGGCGGGAGGGTAGTTTACTTTGTTGTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
3UTR-3UTR GCA 90 bp TTAACCAACCGTCTTGCAGCTATACTGCCACTCTACCAGCAGATGGTGCTACATCCCCCACCCAGGTGTTaGTACAGAATCAGCAAGTTC +
Preference number: 2 (lower is better)
Translates to: LTNRLAAILPLYQQMVLHPPPRC*YRISKF
Trigger: GAACTTGCTGATTCTGTAGCAACACCTGGGTGGGGG...ATGTAGCACCATCTGCTGGTAGAGTGGCAGTATAGCTGCAAGACGGTTGGTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
3UTR-3UTR CCA 90 bp CGTCTTGCAGCTATACTGCCACTCTACCAGCAGATGGTGCTACATCCGTTGGACCTTATTACAAAGAGATaGATGCACAGGACTAAACAG +
Preference number: 2 (lower is better)
Translates to: RLAAILPLYQQMVLHPLDLITKR*MHRTKQ
Trigger: CTGTTTAGTCCTGTGCATCCATCTCTTTGTAATAAG...GTCCAACGGATGTAGCACCATCTGCTGGTAGAGTGGCAGTATAGCTGCAAGACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
3UTR-3UTR CCA 90 bp AGAACCAACCATGTCAAGATGATAAGCAAATCGCTTATTACAAAGAGATGGATGAAAAATGTGTGTGTGTaGGGCCGAGTCCACCTTCAG +
Preference number: 2 (lower is better)
Translates to: RTNHVKMISKSLITKRWMKNVCV*GRVHLQ
Trigger: CTGAAGGTGGACTCGGCCCCACACACACACATTTTT...CATCCATCTCTTTGTAATAAGCGATTTGCTTATCATCTTGACATGGTTGGTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
3UTR-3UTR CCA 90 bp AGAACCAACCATGTCAAGATGATAAGCAAATCGCTTATTACAAAGAGATGGATGTCCAAATTCCAGGCATaGGATCCAAGTAGGTTTCAT +
Preference number: 2 (lower is better)
Translates to: RTNHVKMISKSLITKRWMSKFQA*DPSRFH
Trigger: ATGAAACCTACTTGGATCCCATGCCTGGAATTTGGA...CATCCATCTCTTTGTAATAAGCGATTTGCTTATCATCTTGACATGGTTGGTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
3UTR GCA 72 bp GTAAACTACCCTCCCGCCCAACCCCCACCCAGGTGTTaGTACAGAATCAGCAAGTTCACTCCCGCCCGCCCA +
Preference number: 3 (lower is better)
Translates to: VNYPPAQPPPRC*YRISKFTPARP
Trigger: TGGGCGGGCGGGAGTGAACTTGCTGATTCTGTAGCAACACCTGGGTGGGGGTTGGGCGGGAGGGTAGTTTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
3UTR-3UTR CAA 90 bp TTAACCAACCGTCTTGCAGCTATACTGCCACTCTACCAGCAGATGGTGCTACATACCCCCACCCAGGTGTaGCTACAGAATCAGCAAGTT +
Preference number: 3 (lower is better)
Translates to: LTNRLAAILPLYQQMVLHTPTQV*LQNQQV
Trigger: AACTTGCTGATTCTGTAGCAACACCTGGGTGGGGGT...ATGTAGCACCATCTGCTGGTAGAGTGGCAGTATAGCTGCAAGACGGTTGGTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
3UTR CCA 72 bp GTCAAGATGATAAGCAAATCGCTTATTACAAAGAGATaGATGCACAGGACTAAACAGCCACATCCACCACTT +
Preference number: 3 (lower is better)
Translates to: VKMISKSLITKR*MHRTKQPHPPL
Trigger: AAGTGGTGGATGTGGCTGTTTAGTCCTGTGCATCCATCTCTTTGTAATAAGCGATTTGCTTATCATCTTGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
3UTR TCA 72 bp ACAAGTAAATGTGGACCTTTCAAGTCTGCAGAATTCTaGTGGCAAACTGCTAAATCTGATGAAATTGTCCTG +
Preference number: 3 (lower is better)
Translates to: TSKCGPFKSAEF*WQTAKSDEIVL
Trigger: CAGGACAATTTCATCAGATTTAGCAGTTTGCCATCAGAATTCTGCAGACTTGAAAGGTCCACATTTACTTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CCA 90 bp CCACCCAGGTGTTGCTACAGAATCAGCAAGTTCACTCCCGCCCGCCCACCCGCCGCGGCGACGCGGCCATaGCGGCATCCGCCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: PPRCCYRISKFTPARPPAAATRP*RHPPPP
Trigger: TGGAGGAGGCGGATGCCGCCATGGCCGCGTCGCCGC...GGCGGGTGGGCGGGCGGGAGTGAACTTGCTGATTCTGTAGCAACACCTGGGTGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR GCA 90 bp CCACCCAGGTGTTGCTACAGAATCAGCAAGTTCACTCCCGCCCGCCCACCCGCCTCCACCGCGCCGAACTaGGAGAAGTGCTCGATCAGG +
Preference number: 4 (lower is better)
Translates to: PPRCCYRISKFTPARPPASTAPN*EKCSIR
Trigger: CCTGATCGAGCACTTCTCGCAGTTCGGCGCGGTGGA...GGCGGGTGGGCGGGCGGGAGTGAACTTGCTGATTCTGTAGCAACACCTGGGTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR GCA 90 bp GGTATCAAGTCCTTACAACAAAGTAAACTACCCTCCCGCCCAACCCCCACCCAGTTGCCGTCCACCGCGTaGGGCGACGCGGCCATGGCG +
Preference number: 4 (lower is better)
Translates to: GIKSLQQSKLPSRPTPTQLPSTA*GDAAMA
Trigger: CGCCATGGCCGCGTCGCCGCACGCGGTGGACGGCAA...CTGGGTGGGGGTTGGGCGGGAGGGTAGTTTACTTTGTTGTAAGGACTTGATACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR TCA 90 bp CCAACCCCCACCCAGGTGTTGCTACAGAATCAGCAAGTTCACTCCCGCCCGCCCACTGCTTGTCGGCAATaGTCTCCGCCTTCTCCACCG +
Preference number: 4 (lower is better)
Translates to: PTPTQVLLQNQQVHSRPPTACRQ*SPPSPP
Trigger: CGGTGGAGAAGGCGGAGATCATTGCCGACAAGCAGT...GGGCGGGCGGGAGTGAACTTGCTGATTCTGTAGCAACACCTGGGTGGGGGTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR GCA 90 bp CCACCCAGGTGTTGCTACAGAATCAGCAAGTTCACTCCCGCCCGCCCACCCGCCCGCTTCTTGCCCGACTaGTTGTCGGCAATGATCTCC +
Preference number: 4 (lower is better)
Translates to: PPRCCYRISKFTPARPPARFLPD*LSAMIS
Trigger: GGAGATCATTGCCGACAAGCAGTCGGGCAAGAAGCG...GGCGGGTGGGCGGGCGGGAGTGAACTTGCTGATTCTGTAGCAACACCTGGGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CCA 90 bp GGTATCAAGTCCTTACAACAAAGTAAACTACCCTCCCGCCCAACCCCCACCCAGTCCACGCGGTGGCCCTaGATCGGGTGGAACTTGACC +
Preference number: 4 (lower is better)
Translates to: GIKSLQQSKLPSRPTPTQSTRWP*IGWNLT
Trigger: GGTCAAGTTCCACCCGATCCAGGGCCACCGCGTGGA...CTGGGTGGGGGTTGGGCGGGAGGGTAGTTTACTTTGTTGTAAGGACTTGATACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CCA 90 bp CCATCAATGACTGTAACACAAAAATGTGTGTGTGTGGGGCCGAGTCCACCTTCACCCCCGCCGCCCGCGTaGATATCCTCCTTGGGCACC +
Preference number: 4 (lower is better)
Translates to: PSMTVTQKCVCVGPSPPSPPPPA*ISSLGT
Trigger: GGTGCCCAAGGAGGATATCCACGCGGGCGGCGGGGG...TGAAGGTGGACTCGGCCCCACACACACACATTTTTGTGTTACAGTCATTGATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CCA 90 bp CCATCAATGACTGTAACACAAAAATGTGTGTGTGTGGGGCCGAGTCCACCTTCACGCCACCGCCGCCCTTaGCCAGCCCGTTCTGGTCTC +
Preference number: 4 (lower is better)
Translates to: PSMTVTQKCVCVGPSPPSRHRRP*PARSGL
Trigger: GAGACCAGAACGGGCTGGCCAAGGGCGGCGGTGGCG...TGAAGGTGGACTCGGCCCCACACACACACATTTTTGTGTTACAGTCATTGATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR GCA 90 bp CCATCAATGACTGTAACACAAAAATGTGTGTGTGTGGGGCCGAGTCCACCTTCATTCTTCACCTTGGCGTaGGCCCCGGGCCGCGCCGAA +
Preference number: 4 (lower is better)
Translates to: PSMTVTQKCVCVGPSPPSFFTLA*APGRAE
Trigger: TTCGGCGCGGCCCGGGGCGCACGCCAAGGTGAAGAA...TGAAGGTGGACTCGGCCCCACACACACACATTTTTGTGTTACAGTCATTGATGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CCA 90 bp TTAACCAACCGTCTTGCAGCTATACTGCCACTCTACCAGCAGATGGTGCTACATACAGCTTCTTCACCTTaGCGTGCGCCCCGGGCCGCG +
Preference number: 4 (lower is better)
Translates to: LTNRLAAILPLYQQMVLHTASSP*RAPRAA
Trigger: CGCGGCCCGGGGCGCACGCCAAGGTGAAGAAGCTGT...ATGTAGCACCATCTGCTGGTAGAGTGGCAGTATAGCTGCAAGACGGTTGGTTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR TCA 90 bp TTAACCAACCGTCTTGCAGCTATACTGCCACTCTACCAGCAGATGGTGCTACATGGATCGGGTGGAACTTaGCCACCGCGGCCTTGTCGG +
Preference number: 4 (lower is better)
Translates to: LTNRLAAILPLYQQMVLHGSGGT*PPRPCR
Trigger: CCGACAAGGCCGCGGTGGTCAAGTTCCACCCGATCC...ATGTAGCACCATCTGCTGGTAGAGTGGCAGTATAGCTGCAAGACGGTTGGTTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CCA 90 bp CCATCAATGACTGTAACACAAAAATGTGTGTGTGTGGGGCCGAGTCCACCTTCATGGCCCTGGATCGGGTaGAACTTGACCACCGCGGCC +
Preference number: 4 (lower is better)
Translates to: PSMTVTQKCVCVGPSPPSWPWIG*NLTTAA
Trigger: GGCCGCGGTGGTCAAGTTCCACCCGATCCAGGGCCA...TGAAGGTGGACTCGGCCCCACACACACACATTTTTGTGTTACAGTCATTGATGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CCA 90 bp CCATCAATGACTGTAACACAAAAATGTGTGTGTGTGGGGCCGAGTCCACCTTCATTCACCTCCACGCGGTaGCCCTGGATCGGGTGGAAC +
Preference number: 4 (lower is better)
Translates to: PSMTVTQKCVCVGPSPPSFTSTR*PWIGWN
Trigger: GTTCCACCCGATCCAGGGCCACCGCGTGGAGGTGAA...TGAAGGTGGACTCGGCCCCACACACACACATTTTTGTGTTACAGTCATTGATGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR GCA 90 bp ACATCCGTTGGACTTAAAAGAGGACAAAGTTCAGACTTAGGGAAGAAACGCTTTAGCCGCCGAAGCCGTTaGCGTAGTCGCTGCCGCCGT +
Preference number: 4 (lower is better)
Translates to: TSVGLKRGQSSDLGKKRFSRRSR*RSRCRR
Trigger: ACGGCGGCAGCGACTACGGCAACGGCTTCGGCGGCT...AAAGCGTTTCTTCCCTAAGTCTGAACTTTGTCCTCTTTTAAGTCCAACGGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CCA 90 bp ACATCCGTTGGACTTAAAAGAGGACAAAGTTCAGACTTAGGGAAGAAACGCTTTCCGAAGGCCTCGAAGTaGCCGCGCAGCCCCGACTCA +
Preference number: 4 (lower is better)
Translates to: TSVGLKRGQSSDLGKKRFPKASK*PRSPDS
Trigger: TGAGTCGGGGCTGCGCGGCCACTTCGAGGCCTTCGG...AAAGCGTTTCTTCCCTAAGTCTGAACTTTGTCCTCTTTTAAGTCCAACGGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR GCA 90 bp ACATCCGTTGGACTTAAAAGAGGACAAAGTTCAGACTTAGGGAAGAAACGCTTTGGTGCTGGCTGTAGCTaGCGAAGCCGCCGAAGCCGT +
Preference number: 4 (lower is better)
Translates to: TSVGLKRGQSSDLGKKRFGAGCS*RSRRSR
Trigger: ACGGCTTCGGCGGCTTCGGCAGCTACAGCCAGCACC...AAAGCGTTTCTTCCCTAAGTCTGAACTTTGTCCTCTTTTAAGTCCAACGGATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CCA 90 bp ACATCCGTTGGACTTAAAAGAGGACAAAGTTCAGACTTAGGGAAGAAACGCTTTCGGGAGCGCTTCGTCTaGGGGTTCACCACCACCACG +
Preference number: 4 (lower is better)
Translates to: TSVGLKRGQSSDLGKKRFRERFV*GFTTTT
Trigger: CGTGGTGGTGGTGAACCCCCAGACGAAGCGCTCCCG...AAAGCGTTTCTTCCCTAAGTCTGAACTTTGTCCTCTTTTAAGTCCAACGGATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR GCA 90 bp ACATCCGTTGGACTTAAAAGAGGACAAAGTTCAGACTTAGGGAAGAAACGCTTTCCCGACTCACTCGTCTaGACATTGAGGCCGCCGATG +
Preference number: 4 (lower is better)
Translates to: TSVGLKRGQSSDLGKKRFPDSLV*TLRPPM
Trigger: CATCGGCGGCCTCAATGTGCAGACGAGTGAGTCGGG...AAAGCGTTTCTTCCCTAAGTCTGAACTTTGTCCTCTTTTAAGTCCAACGGATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR GCA 90 bp ACATCCGTTGGACTTAAAAGAGGACAAAGTTCAGACTTAGGGAAGAAACGCTTTCCGAACTGCGAGAAGTaGTCGATCAGGTCGCCCTCC +
Preference number: 4 (lower is better)
Translates to: TSVGLKRGQSSDLGKKRFPNCEK*SIRSPS
Trigger: GGAGGGCGACCTGATCGAGCACTTCTCGCAGTTCGG...AAAGCGTTTCTTCCCTAAGTCTGAACTTTGTCCTCTTTTAAGTCCAACGGATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR GCA 90 bp ACATCCGTTGGACTTAAAAGAGGACAAAGTTCAGACTTAGGGAAGAAACGCTTTCGAAGCCGCGCTTCTTaGCCGACTGCTTGTCGGCAA +
Preference number: 4 (lower is better)
Translates to: TSVGLKRGQSSDLGKKRFRSRAS*PTACRQ
Trigger: TTGCCGACAAGCAGTCGGGCAAGAAGCGCGGCTTCG...AAAGCGTTTCTTCCCTAAGTCTGAACTTTGTCCTCTTTTAAGTCCAACGGATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CCA 90 bp ACATCCGTTGGACTTAAAAGAGGACAAAGTTCAGACTTAGGGAAGAAACGCTTTCGTGGATATCCTCCTTaGGCACCGCCTTCTTCACCT +
Preference number: 4 (lower is better)
Translates to: TSVGLKRGQSSDLGKKRFRGYPP*APPSSP
Trigger: AGGTGAAGAAGGCGGTGCCCAAGGAGGATATCCACG...AAAGCGTTTCTTCCCTAAGTCTGAACTTTGTCCTCTTTTAAGTCCAACGGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CCA 90 bp CCGCCGCGCCCGCCCCGGGCCGCCCGCGCACCCCCGCCGCCCGCGTaGATATCCTCCTTGGGCACCGCCTTCTTCACCTCCACGCGGTGG +
Preference number: 5 (lower is better)
Translates to: PPRPPRAARAPPPPA*ISSLGTAFFTSTRW
Trigger: CCACCGCGTGGAGGTGAAGAAGGCGGTGCCCAAGGAGGATATCCACGCGGGCGGCGGGGGTGCGCGGGCGGCCCGGGGCGGGCGCGGCGG
80% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 90 bp GCTGGCTGTAGCTGCCGAAGCCGCCGAAGCCGTTGCCGTAGTCGCTaGCGCCGTATGAGCCGCCGCCGCCGCCACCGCCCCCGTAGGCGC +
Preference number: 5 (lower is better)
Translates to: AGCSCRSRRSRCRSR*RRMSRRRRHRPRRR
Trigger: GCGCCTACGGGGGCGGTGGCGGCGGCGGCGGCTCATACGGCGGCAGCGACTACGGCAACGGCTTCGGCGGCTTCGGCAGCTACAGCCAGC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 90 bp CGTAGCCGCCTCTGTACGGTCCACTGTTGCTGCGGCCGCCCCAGCTaGCGCCGCCGCCGCCGCCTCCGCCGCTCTTCATCGGCCCGTACG +
Preference number: 5 (lower is better)
Translates to: RSRLCTVHCCCGRPS*RRRRRLRRSSSART
Trigger: CGTACGGGCCGATGAAGAGCGGCGGAGGCGGCGGCGGCGGCGGCAGCTGGGGCGGCCGCAGCAACAGTGGACCGTACAGAGGCGGCTACG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 90 bp GCGCCGAATCCTCCCGCGACACGGCGCGCTTCAGCTCCACCGTGTTaGCGTCCACCGCGTGCGGCGACGCGGCCATGGCGGCATCCGCCT +
Preference number: 5 (lower is better)
Translates to: APNPPATRRASAPPC*RPPRAATRPWRHPP
Trigger: AGGCGGATGCCGCCATGGCCGCGTCGCCGCACGCGGTGGACGGCAACACGGTGGAGCTGAAGCGCGCCGTGTCGCGGGAGGATTCGGCGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 90 bp CGCGACACGGCGCGCTTCAGCTCCACCGTGTTGCCGTCCACCGCGTaGGGCGACGCGGCCATGGCGGCATCCGCCTCCTCCACGTTCGAG +
Preference number: 5 (lower is better)
Translates to: RDTARFSSTVLPSTA*GDAAMAASASSTFE
Trigger: CTCGAACGTGGAGGAGGCGGATGCCGCCATGGCCGCGTCGCCGCACGCGGTGGACGGCAACACGGTGGAGCTGAAGCGCGCCGTGTCGCG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 90 bp ACGTCGCCCTTGAGGCCGCCCACGAACAGCTTCTTCACCTTGGCGTaGGCCCCGGGCCGCGCCGAATCCTCCCGCGACACGGCGCGCTTC +
Preference number: 5 (lower is better)
Translates to: TSPLRPPTNSFFTLA*APGRAESSRDTARF
Trigger: GAAGCGCGCCGTGTCGCGGGAGGATTCGGCGCGGCCCGGGGCGCACGCCAAGGTGAAGAAGCTGTTCGTGGGCGGCCTCAAGGGCGACGT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 90 bp ACGAGGACTGGTGCTGGCTGTAGCTGCCGAAGCCGCCGAAGCCGTTaGCGTAGTCGCTGCCGCCGTATGAGCCGCCGCCGCCGCCACCGC +
Preference number: 5 (lower is better)
Translates to: TRTGAGCSCRSRRSR*RSRCRRMSRRRRHR
Trigger: GCGGTGGCGGCGGCGGCGGCTCATACGGCGGCAGCGACTACGGCAACGGCTTCGGCGGCTTCGGCAGCTACAGCCAGCACCAGTCCTCGT
72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CCA 90 bp TCAGCTCCACCGTGTTGCCGTCCACCGCGTGCGGCGACGCGGCCATaGCGGCATCCGCCTCCTCCACGTTCGAGTAGGTCACGAAGCCGA +
Preference number: 5 (lower is better)
Translates to: SAPPCCRPPRAATRP*RHPPPPRSSRSRSR
Trigger: TCGGCTTCGTGACCTACTCGAACGTGGAGGAGGCGGATGCCGCCATGGCCGCGTCGCCGCACGCGGTGGACGGCAACACGGTGGAGCTGA
69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CCA 90 bp TTGGGCACCGCCTTCTTCACCTCCACGCGGTGGCCCTGGATCGGGTaGAACTTGACCACCGCGGCCTTGTCGGCCGCGTCGTGGCTCTGG +
Preference number: 5 (lower is better)
Translates to: LGTAFFTSTRWPWIG*NLTTAALSAASWLW
Trigger: CCAGAGCCACGACGCGGCCGACAAGGCCGCGGTGGTCAAGTTCCACCCGATCCAGGGCCACCGCGTGGAGGTGAAGAAGGCGGTGCCCAA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS TCA 90 bp ACTGCGAGAAGTGCTCGATCAGGTCGCCCTCCGCCACGTCGCCCTTaGGGCCGCCCACGAACAGCTTCTTCACCTTGGCGTGCGCCCCGG +
Preference number: 5 (lower is better)
Translates to: TARSARSGRPPPRRP*GRPRTASSPWRAPR
Trigger: CCGGGGCGCACGCCAAGGTGAAGAAGCTGTTCGTGGGCGGCCTCAAGGGCGACGTGGCGGAGGGCGACCTGATCGAGCACTTCTCGCAGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 90 bp TCGGCAATGATCTCCGCCTTCTCCACCGCGCCGAACTGCGAGAAGTaGTCGATCAGGTCGCCCTCCGCCACGTCGCCCTTGAGGCCGCCC +
Preference number: 5 (lower is better)
Translates to: SAMISAFSTAPNCEK*SIRSPSATSPLRPP
Trigger: GGGCGGCCTCAAGGGCGACGTGGCGGAGGGCGACCTGATCGAGCACTTCTCGCAGTTCGGCGCGGTGGAGAAGGCGGAGATCATTGCCGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 90 bp CGCCGCTCTTCATCGGCCCGTACGAGGACTGGTGCTGGCTGTAGCTaGCGAAGCCGCCGAAGCCGTTGCCGTAGTCGCTGCCGCCGTATG +
Preference number: 5 (lower is better)
Translates to: RRSSSARTRTGAGCS*RSRRSRCRSRCRRM
Trigger: CATACGGCGGCAGCGACTACGGCAACGGCTTCGGCGGCTTCGGCAGCTACAGCCAGCACCAGTCCTCGTACGGGCCGATGAAGAGCGGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CCA 90 bp TTCACCACCACCACGCAGTCCGTCAGCGTCCCGAAGGCCTCGAAGTaGCCGCGCAGCCCCGACTCACTCGTCTGCACATTGAGGCCGCCG +
Preference number: 5 (lower is better)
Translates to: FTTTTQSVSVPKASK*PRSPDSLVCTLRPP
Trigger: CGGCGGCCTCAATGTGCAGACGAGTGAGTCGGGGCTGCGCGGCCACTTCGAGGCCTTCGGGACGCTGACGGACTGCGTGGTGGTGGTGAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS TCA 90 bp CCGCCTTCTTCACCTCCACGCGGTGGCCCTGGATCGGGTGGAACTTaGCCACCGCGGCCTTGTCGGCCGCGTCGTGGCTCTGGAAGTAGA +
Preference number: 5 (lower is better)
Translates to: PPSSPPRGGPGSGGT*PPRPCRPRRGSGSR
Trigger: TCTACTTCCAGAGCCACGACGCGGCCGACAAGGCCGCGGTGGTCAAGTTCCACCCGATCCAGGGCCACCGCGTGGAGGTGAAGAAGGCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CCA 90 bp ATATCCTCCTTGGGCACCGCCTTCTTCACCTCCACGCGGTGGCCCTaGATCGGGTGGAACTTGACCACCGCGGCCTTGTCGGCCGCGTCG +
Preference number: 5 (lower is better)
Translates to: ISSLGTAFFTSTRWP*IGWNLTTAALSAAS
Trigger: CGACGCGGCCGACAAGGCCGCGGTGGTCAAGTTCCACCCGATCCAGGGCCACCGCGTGGAGGTGAAGAAGGCGGTGCCCAAGGAGGATAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CAA 90 bp CCAACCCCCACCCAGGTGTTGCTACAGAATCAGCAAGTTCACTCCCGCCCGCCCTTGACCACCGCGGCCTaGTCGGCCGCGTCGTGGCTC +
Preference number: 5 (lower is better)
Translates to: PTPTQVLLQNQQVHSRPPLTTAA*SAASWL
Trigger: GAGCCACGACGCGGCCGACAAGGCCGCGGTGGTCAA...GGGCGGGCGGGAGTGAACTTGCTGATTCTGTAGCAACACCTGGGTGGGGGTTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 90 bp GACTGCTTGTCGGCAATGATCTCCGCCTTCTCCACCGCGCCGAACTaGGAGAAGTGCTCGATCAGGTCGCCCTCCGCCACGTCGCCCTTG +
Preference number: 5 (lower is better)
Translates to: DCLSAMISAFSTAPN*EKCSIRSPSATSPL
Trigger: CAAGGGCGACGTGGCGGAGGGCGACCTGATCGAGCACTTCTCGCAGTTCGGCGCGGTGGAGAAGGCGGAGATCATTGCCGACAAGCAGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 90 bp GTCCCGAAGGCCTCGAAGTGGCCGCGCAGCCCCGACTCACTCGTCTaGACATTGAGGCCGCCGATGAACAGCTTACAGAGCTGCGAGTTC +
Preference number: 5 (lower is better)
Translates to: VPKASKWPRSPDSLV*TLRPPMNSLQSCEF
Trigger: GAACTCGCAGCTCTGTAAGCTGTTCATCGGCGGCCTCAATGTGCAGACGAGTGAGTCGGGGCTGCGCGGCCACTTCGAGGCCTTCGGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS TCA 90 bp AGACGAAGCCGAAGCCGCGCTTCTTGCCCGACTGCTTGTCGGCAATaGTCTCCGCCTTCTCCACCGCGCCGAACTGCGAGAAGTGCTCGA +
Preference number: 5 (lower is better)
Translates to: RRSRSRASCPTACRQ*SPPSPPRRTARSAR
Trigger: TCGAGCACTTCTCGCAGTTCGGCGCGGTGGAGAAGGCGGAGATCATTGCCGACAAGCAGTCGGGCAAGAAGCGCGGCTTCGGCTTCGTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CAA 90 bp CGTCTTGCAGCTATACTGCCACTCTACCAGCAGATGGTGCTACATCCGTTGGACCCGAAGCCGCGCTTCTaGCCCGACTGCTTGTCGGCA +
Preference number: 5 (lower is better)
Translates to: RLAAILPLYQQMVLHPLDPKPRF*PDCLSA
Trigger: TGCCGACAAGCAGTCGGGCAAGAAGCGCGGCTTCGG...GTCCAACGGATGTAGCACCATCTGCTGGTAGAGTGGCAGTATAGCTGCAAGACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CAA 90 bp GGTATCAAGTCCTTACAACAAAGTAAACTACCCTCCCGCCCAACCCCCACCCAGTGGATCGGGTGGAACTaGACCACCGCGGCCTTGTCG +
Preference number: 5 (lower is better)
Translates to: GIKSLQQSKLPSRPTPTQWIGWN*TTAALS
Trigger: CGACAAGGCCGCGGTGGTCAAGTTCCACCCGATCCA...CTGGGTGGGGGTTGGGCGGGAGGGTAGTTTACTTTGTTGTAAGGACTTGATACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CAA 90 bp GGTATCAAGTCCTTACAACAAAGTAAACTACCCTCCCGCCCAACCCCCACCCAGGCGTGGATATCCTCCTaGGGCACCGCCTTCTTCACC +
Preference number: 5 (lower is better)
Translates to: GIKSLQQSKLPSRPTPTQAWISS*GTAFFT
Trigger: GGTGAAGAAGGCGGTGCCCAAGGAGGATATCCACGC...CTGGGTGGGGGTTGGGCGGGAGGGTAGTTTACTTTGTTGTAAGGACTTGATACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS-3UTR CAA 90 bp CCATCAATGACTGTAACACAAAAATGTGTGTGTGTGGGGCCGAGTCCACCTTCATCACTCGTCTGCACATaGAGGCCGCCGATGAACAGC +
Preference number: 5 (lower is better)
Translates to: PSMTVTQKCVCVGPSPPSSLVCT*RPPMNS
Trigger: GCTGTTCATCGGCGGCCTCAATGTGCAGACGAGTGA...TGAAGGTGGACTCGGCCCCACACACACACATTTTTGTGTTACAGTCATTGATGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CCA 72 bp CCGCCCCGGGCCGCCCGCGCACCCCCGCCGCCCGCGTaGATATCCTCCTTGGGCACCGCCTTCTTCACCTCC +
Preference number: 6 (lower is better)
Translates to: PPRAARAPPPPA*ISSLGTAFFTS
Trigger: GGAGGTGAAGAAGGCGGTGCCCAAGGAGGATATCCACGCGGGCGGCGGGGGTGCGCGGGCGGCCCGGGGCGG
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CAA 90 bp CGCGCCGAATCCTCCCGCGACACGGCGCGCTTCAGCTCCACCGTGTaGCCGTCCACCGCGTGCGGCGACGCGGCCATGGCGGCATCCGCC +
Preference number: 6 (lower is better)
Translates to: RAESSRDTARFSSTV*PSTACGDAAMAASA
Trigger: GGCGGATGCCGCCATGGCCGCGTCGCCGCACGCGGTGGACGGCAACACGGTGGAGCTGAAGCGCGCCGTGTCGCGGGAGGATTCGGCGCG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 72 bp CCTCCCGCGACACGGCGCGCTTCAGCTCCACCGTGTTaGCGTCCACCGCGTGCGGCGACGCGGCCATGGCGG +
Preference number: 6 (lower is better)
Translates to: PPATRRASAPPC*RPPRAATRPWR
Trigger: CCGCCATGGCCGCGTCGCCGCACGCGGTGGACGGCAACACGGTGGAGCTGAAGCGCGCCGTGTCGCGGGAGG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 72 bp GCGCGCTTCAGCTCCACCGTGTTGCCGTCCACCGCGTaGGGCGACGCGGCCATGGCGGCATCCGCCTCCTCC +
Preference number: 6 (lower is better)
Translates to: ARFSSTVLPSTA*GDAAMAASASS
Trigger: GGAGGAGGCGGATGCCGCCATGGCCGCGTCGCCGCACGCGGTGGACGGCAACACGGTGGAGCTGAAGCGCGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CAA 72 bp TCCTCCCGCGACACGGCGCGCTTCAGCTCCACCGTGTaGCCGTCCACCGCGTGCGGCGACGCGGCCATGGCG +
Preference number: 6 (lower is better)
Translates to: SSRDTARFSSTV*PSTACGDAAMA
Trigger: CGCCATGGCCGCGTCGCCGCACGCGGTGGACGGCAACACGGTGGAGCTGAAGCGCGCCGTGTCGCGGGAGGA
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CAA 90 bp TCCGCCACGTCGCCCTTGAGGCCGCCCACGAACAGCTTCTTCACCTaGGCGTGCGCCCCGGGCCGCGCCGAATCCTCCCGCGACACGGCG +
Preference number: 6 (lower is better)
Translates to: SATSPLRPPTNSFFT*ACAPGRAESSRDTA
Trigger: CGCCGTGTCGCGGGAGGATTCGGCGCGGCCCGGGGCGCACGCCAAGGTGAAGAAGCTGTTCGTGGGCGGCCTCAAGGGCGACGTGGCGGA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 72 bp GGTGCTGGCTGTAGCTGCCGAAGCCGCCGAAGCCGTTaGCGTAGTCGCTGCCGCCGTATGAGCCGCCGCCGC +
Preference number: 6 (lower is better)
Translates to: GAGCSCRSRRSR*RSRCRRMSRRR
Trigger: GCGGCGGCGGCTCATACGGCGGCAGCGACTACGGCAACGGCTTCGGCGGCTTCGGCAGCTACAGCCAGCACC
72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CAA 72 bp TCGCCCTTGAGGCCGCCCACGAACAGCTTCTTCACCTaGGCGTGCGCCCCGGGCCGCGCCGAATCCTCCCGC +
Preference number: 6 (lower is better)
Translates to: SPLRPPTNSFFT*ACAPGRAESSR
Trigger: GCGGGAGGATTCGGCGCGGCCCGGGGCGCACGCCAAGGTGAAGAAGCTGTTCGTGGGCGGCCTCAAGGGCGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 72 bp TTGAGGCCGCCCACGAACAGCTTCTTCACCTTGGCGTaGGCCCCGGGCCGCGCCGAATCCTCCCGCGACACG +
Preference number: 6 (lower is better)
Translates to: LRPPTNSFFTLA*APGRAESSRDT
Trigger: CGTGTCGCGGGAGGATTCGGCGCGGCCCGGGGCGCACGCCAAGGTGAAGAAGCTGTTCGTGGGCGGCCTCAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CCA 72 bp CCGTGTTGCCGTCCACCGCGTGCGGCGACGCGGCCATaGCGGCATCCGCCTCCTCCACGTTCGAGTAGGTCA +
Preference number: 6 (lower is better)
Translates to: PCCRPPRAATRP*RHPPPPRSSRS
Trigger: TGACCTACTCGAACGTGGAGGAGGCGGATGCCGCCATGGCCGCGTCGCCGCACGCGGTGGACGGCAACACGG
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS TCA 72 bp TCACCTCCACGCGGTGGCCCTGGATCGGGTGGAACTTaGCCACCGCGGCCTTGTCGGCCGCGTCGTGGCTCT +
Preference number: 6 (lower is better)
Translates to: SPPRGGPGSGGT*PPRPCRPRRGS
Trigger: AGAGCCACGACGCGGCCGACAAGGCCGCGGTGGTCAAGTTCCACCCGATCCAGGGCCACCGCGTGGAGGTGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CCA 72 bp GCCTTCTTCACCTCCACGCGGTGGCCCTGGATCGGGTaGAACTTGACCACCGCGGCCTTGTCGGCCGCGTCG +
Preference number: 6 (lower is better)
Translates to: AFFTSTRWPWIG*NLTTAALSAAS
Trigger: CGACGCGGCCGACAAGGCCGCGGTGGTCAAGTTCCACCCGATCCAGGGCCACCGCGTGGAGGTGAAGAAGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CAA 72 bp TTCACCTCCACGCGGTGGCCCTGGATCGGGTGGAACTaGACCACCGCGGCCTTGTCGGCCGCGTCGTGGCTC +
Preference number: 6 (lower is better)
Translates to: FTSTRWPWIGWN*TTAALSAASWL
Trigger: GAGCCACGACGCGGCCGACAAGGCCGCGGTGGTCAAGTTCCACCCGATCCAGGGCCACCGCGTGGAGGTGAA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CAA 90 bp AACTGCGAGAAGTGCTCGATCAGGTCGCCCTCCGCCACGTCGCCCTaGAGGCCGCCCACGAACAGCTTCTTCACCTTGGCGTGCGCCCCG +
Preference number: 6 (lower is better)
Translates to: NCEKCSIRSPSATSP*RPPTNSFFTLACAP
Trigger: CGGGGCGCACGCCAAGGTGAAGAAGCTGTTCGTGGGCGGCCTCAAGGGCGACGTGGCGGAGGGCGACCTGATCGAGCACTTCTCGCAGTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 72 bp ATCTCCGCCTTCTCCACCGCGCCGAACTGCGAGAAGTaGTCGATCAGGTCGCCCTCCGCCACGTCGCCCTTG +
Preference number: 6 (lower is better)
Translates to: ISAFSTAPNCEK*SIRSPSATSPL
Trigger: CAAGGGCGACGTGGCGGAGGGCGACCTGATCGAGCACTTCTCGCAGTTCGGCGCGGTGGAGAAGGCGGAGAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 72 bp TCATCGGCCCGTACGAGGACTGGTGCTGGCTGTAGCTaGCGAAGCCGCCGAAGCCGTTGCCGTAGTCGCTGC +
Preference number: 6 (lower is better)
Translates to: SSARTRTGAGCS*RSRRSRCRSRC
Trigger: GCAGCGACTACGGCAACGGCTTCGGCGGCTTCGGCAGCTACAGCCAGCACCAGTCCTCGTACGGGCCGATGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CCA 72 bp ACCACGCAGTCCGTCAGCGTCCCGAAGGCCTCGAAGTaGCCGCGCAGCCCCGACTCACTCGTCTGCACATTG +
Preference number: 6 (lower is better)
Translates to: TTQSVSVPKASK*PRSPDSLVCTL
Trigger: CAATGTGCAGACGAGTGAGTCGGGGCTGCGCGGCCACTTCGAGGCCTTCGGGACGCTGACGGACTGCGTGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS TCA 72 bp AGTGCTCGATCAGGTCGCCCTCCGCCACGTCGCCCTTaGGGCCGCCCACGAACAGCTTCTTCACCTTGGCGT +
Preference number: 6 (lower is better)
Translates to: SARSGRPPPRRP*GRPRTASSPWR
Trigger: ACGCCAAGGTGAAGAAGCTGTTCGTGGGCGGCCTCAAGGGCGACGTGGCGGAGGGCGACCTGATCGAGCACT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS GCA 72 bp TCGGCAATGATCTCCGCCTTCTCCACCGCGCCGAACTaGGAGAAGTGCTCGATCAGGTCGCCCTCCGCCACG +
Preference number: 6 (lower is better)
Translates to: SAMISAFSTAPN*EKCSIRSPSAT
Trigger: CGTGGCGGAGGGCGACCTGATCGAGCACTTCTCGCAGTTCGGCGCGGTGGAGAAGGCGGAGATCATTGCCGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CAA 72 bp AAGTGCTCGATCAGGTCGCCCTCCGCCACGTCGCCCTaGAGGCCGCCCACGAACAGCTTCTTCACCTTGGCG +
Preference number: 6 (lower is better)
Translates to: KCSIRSPSATSP*RPPTNSFFTLA
Trigger: CGCCAAGGTGAAGAAGCTGTTCGTGGGCGGCCTCAAGGGCGACGTGGCGGAGGGCGACCTGATCGAGCACTT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS TCA 72 bp CGAAGCCGCGCTTCTTGCCCGACTGCTTGTCGGCAATaGTCTCCGCCTTCTCCACCGCGCCGAACTGCGAGA +
Preference number: 6 (lower is better)
Translates to: RSRASCPTACRQ*SPPSPPRRTAR
Trigger: TCTCGCAGTTCGGCGCGGTGGAGAAGGCGGAGATCATTGCCGACAAGCAGTCGGGCAAGAAGCGCGGCTTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7
CDS CAA 72 bp AAGTGGCCGCGCAGCCCCGACTCACTCGTCTGCACATaGAGGCCGCCGATGAACAGCTTACAGAGCTGCGAG +
Preference number: 6 (lower is better)
Translates to: KWPRSPDSLVCT*RPPMNSLQSCE
Trigger: CTCGCAGCTCTGTAAGCTGTTCATCGGCGGCCTCAATGTGCAGACGAGTGAGTCGGGGCTGCGCGGCCACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007980.7