RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HMX3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040148

Ensembl transcript IDs: ENSMUST00000046093.6

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CGCCGGCTTCTTCTCGGGACTCTCGGCGCCCGCCTTCCAGTCCTCTaGGCCCGGTGTCGCCGTAGTCGCCCCTACGGTCGTCCCGGCCGC +
Preference number: 5 (lower is better)
Translates to: RRLLLGTLGARLPVL*ARCRRSRPYGRPGR
Trigger: GCGGCCGGGACGACCGTAGGGGCGACTACGGCGACACCGGGCTCAGAGGACTGGAAGGCGGGCGCCGAGAGTCCCGAGAAGAAGCCGGCG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS GCA 90 bp CTCTGCGCTGGGATCTCAAAGCGGGGGAAAGCCAGGTCGCCCACCTaGGAGAGCGCGAAGCCCGCGGCGCCCTCCAGGGCACCTTTGGCT +
Preference number: 5 (lower is better)
Translates to: LCAGISKRGKARSPT*ESAKPAAPSRAPLA
Trigger: AGCCAAAGGTGCCCTGGAGGGCGCCGCGGGCTTCGCGCTCTCGCAGGTGGGCGACCTGGCTTTCCCCCGCTTTGAGATCCCAGCGCAGAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS TCA 90 bp CGTCCGGGCTCTTGGAGTCCAGCTCCTTGTGGTCGGGGTCAGCCTTaGGCAGAGGCTCCGGGGAGTCTCGATCGGTGCCGGACGCAGGGG +
Preference number: 5 (lower is better)
Translates to: RPGSWSPAPCGRGQP*AEAPGSLDRCRTQG
Trigger: CCCCTGCGTCCGGCACCGATCGAGACTCCCCGGAGCCTCTGCTCAAGGCTGACCCCGACCACAAGGAGCTGGACTCCAAGAGCCCGGACG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS CCA 90 bp CGGGGAGCGCTCCAGGTAGTGCGCGGGCAGGGCAAACCTCTGCGCTaGGATCTCAAAGCGGGGGAAAGCCAGGTCGCCCACCTGCGAGAG +
Preference number: 5 (lower is better)
Translates to: RGALQVVRGQGKPLR*DLKAGESQVAHLRE
Trigger: CTCTCGCAGGTGGGCGACCTGGCTTTCCCCCGCTTTGAGATCCCAGCGCAGAGGTTTGCCCTGCCCGCGCACTACCTGGAGCGCTCCCCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS CCA 90 bp TCTTCCAGAATGATCTCGTCCGGGCTCTTGGAGTCCAGCTCCTTGTaGTCGGGGTCAGCCTTGAGCAGAGGCTCCGGGGAGTCTCGATCG +
Preference number: 5 (lower is better)
Translates to: SSRMISSGLLESSSL*SGSALSRGSGESRS
Trigger: CGATCGAGACTCCCCGGAGCCTCTGCTCAAGGCTGACCCCGACCACAAGGAGCTGGACTCCAAGAGCCCGGACGAGATCATTCTGGAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS GCA 72 bp CGGCTGGCTGACTGGCACCGGTGCCCCCGCAGCCGCTaGCGCCCCCTCGGCCGCAGAGTTCTCGTGGTAGAG +
Preference number: 6 (lower is better)
Translates to: RLADWHRCPRSR*RPLGRRVLVVE
Trigger: CTCTACCACGAGAACTCTGCGGCCGAGGGGGCGGCAGCGGCTGCGGGGGCACCGGTGCCAGTCAGCCAGCCG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS CCA 72 bp GGCGGCAGCAGCCGAGGCCGGAGCAAAGAGCGTTCGTaGGGGCGGCTGAGGCTTCGGGGGCGGCCGGTGATG +
Preference number: 6 (lower is better)
Translates to: GGSSRGRSKERS*GRLRLRGRPVM
Trigger: CATCACCGGCCGCCCCCGAAGCCTCAGCCGCCCCCACGAACGCTCTTTGCTCCGGCCTCGGCTGCTGCCGCC
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS GCA 72 bp GGGATCTCAAAGCGGGGGAAAGCCAGGTCGCCCACCTaGGAGAGCGCGAAGCCCGCGGCGCCCTCCAGGGCA +
Preference number: 6 (lower is better)
Translates to: GISKRGKARSPT*ESAKPAAPSRA
Trigger: TGCCCTGGAGGGCGCCGCGGGCTTCGCGCTCTCGCAGGTGGGCGACCTGGCTTTCCCCCGCTTTGAGATCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS TCA 72 bp CTTCTCGGGACTCTCGGCGCCCGCCTTCCAGTCCTCTaGGCCCGGTGTCGCCGTAGTCGCCCCTACGGTCGT +
Preference number: 6 (lower is better)
Translates to: LLGTLGARLPVL*ARCRRSRPYGR
Trigger: ACGACCGTAGGGGCGACTACGGCGACACCGGGCTCAGAGGACTGGAAGGCGGGCGCCGAGAGTCCCGAGAAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS CAA 90 bp TCGTCCGGGCTCTTGGAGTCCAGCTCCTTGTGGTCGGGGTCAGCCTaGAGCAGAGGCTCCGGGGAGTCTCGATCGGTGCCGGACGCAGGG +
Preference number: 6 (lower is better)
Translates to: SSGLLESSSLWSGSA*SRGSGESRSVPDAG
Trigger: CCCTGCGTCCGGCACCGATCGAGACTCCCCGGAGCCTCTGCTCAAGGCTGACCCCGACCACAAGGAGCTGGACTCCAAGAGCCCGGACGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS CCA 72 bp GGGCACGGACGAGACCACCGGGTGCGAGTAGTAGACTaGGTGCGGGAAGGTGAGCAGCGGCTGGCTGACTGG +
Preference number: 6 (lower is better)
Translates to: GHGRDHRVRVVD*VREGEQRLADW
Trigger: CCAGTCAGCCAGCCGCTGCTCACCTTCCCGCACCCAGTCTACTACTCGCACCCGGTGGTCTCGTCCGTGCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS CCA 72 bp CTCCAGGTAGTGCGCGGGCAGGGCAAACCTCTGCGCTaGGATCTCAAAGCGGGGGAAAGCCAGGTCGCCCAC +
Preference number: 6 (lower is better)
Translates to: LQVVRGQGKPLR*DLKAGESQVAH
Trigger: GTGGGCGACCTGGCTTTCCCCCGCTTTGAGATCCCAGCGCAGAGGTTTGCCCTGCCCGCGCACTACCTGGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS TCA 72 bp TCTTGGAGTCCAGCTCCTTGTGGTCGGGGTCAGCCTTaGGCAGAGGCTCCGGGGAGTCTCGATCGGTGCCGG +
Preference number: 6 (lower is better)
Translates to: SWSPAPCGRGQP*AEAPGSLDRCR
Trigger: CCGGCACCGATCGAGACTCCCCGGAGCCTCTGCTCAAGGCTGACCCCGACCACAAGGAGCTGGACTCCAAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS CAA 72 bp CTCTTGGAGTCCAGCTCCTTGTGGTCGGGGTCAGCCTaGAGCAGAGGCTCCGGGGAGTCTCGATCGGTGCCG +
Preference number: 6 (lower is better)
Translates to: LLESSSLWSGSA*SRGSGESRSVP
Trigger: CGGCACCGATCGAGACTCCCCGGAGCCTCTGCTCAAGGCTGACCCCGACCACAAGGAGCTGGACTCCAAGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS CCA 72 bp ATGATCTCGTCCGGGCTCTTGGAGTCCAGCTCCTTGTaGTCGGGGTCAGCCTTGAGCAGAGGCTCCGGGGAG +
Preference number: 6 (lower is better)
Translates to: MISSGLLESSSL*SGSALSRGSGE
Trigger: CTCCCCGGAGCCTCTGCTCAAGGCTGACCCCGACCACAAGGAGCTGGACTCCAAGAGCCCGGACGAGATCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS CAA 72 bp AGAATGATCTCGTCCGGGCTCTTGGAGTCCAGCTCCTaGTGGTCGGGGTCAGCCTTGAGCAGAGGCTCCGGG +
Preference number: 6 (lower is better)
Translates to: RMISSGLLESSS*WSGSALSRGSG
Trigger: CCCGGAGCCTCTGCTCAAGGCTGACCCCGACCACAAGGAGCTGGACTCCAAGAGCCCGGACGAGATCATTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS CAA 90 bp CTCTCTTCCAGAATGATCTCGTCCGGGCTCTTGGAGTCCAGCTCCTaGTGGTCGGGGTCAGCCTTGAGCAGAGGCTCCGGGGAGTCTCGA +
Preference number: 6 (lower is better)
Translates to: LSSRMISSGLLESSS*WSGSALSRGSGESR
Trigger: TCGAGACTCCCCGGAGCCTCTGCTCAAGGCTGACCCCGACCACAAGGAGCTGGACTCCAAGAGCCCGGACGAGATCATTCTGGAAGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS CAA 90 bp CCTTCCTCCGAGTCGCTCTCTTCCAGAATGATCTCGTCCGGGCTCTaGGAGTCCAGCTCCTTGTGGTCGGGGTCAGCCTTGAGCAGAGGC +
Preference number: 6 (lower is better)
Translates to: PSSESLSSRMISSGL*ESSSLWSGSALSRG
Trigger: GCCTCTGCTCAAGGCTGACCCCGACCACAAGGAGCTGGACTCCAAGAGCCCGGACGAGATCATTCTGGAAGAGAGCGACTCGGAGGAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6
CDS CAA 72 bp GAGTCGCTCTCTTCCAGAATGATCTCGTCCGGGCTCTaGGAGTCCAGCTCCTTGTGGTCGGGGTCAGCCTTG +
Preference number: 6 (lower is better)
Translates to: ESLSSRMISSGL*ESSSLWSGSAL
Trigger: CAAGGCTGACCCCGACCACAAGGAGCTGGACTCCAAGAGCCCGGACGAGATCATTCTGGAAGAGAGCGACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046093.6