RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HMX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067438

Ensembl transcript IDs: ENSMUST00000087674.6, ENSMUST00000172923.2

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCGCCATACGGTTCCTCGGCCAGCCCATTCCAAGTGTCCGTTTGCTaGCTCGGAGCCGGCATCTGCTCAGCACTCCGTGCCGGCGAGAGC +
Preference number: 1 (lower is better)
Translates to: SPYGSSASPFQVSVC*LGAGICSALRAGES
Trigger: GCTCTCGCCGGCACGGAGTGCTGAGCAGATGCCGGCTCCGAGTCAGCAAACGGACACTTGGAATGGGCTGGCCGAGGAACCGTATGGCGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
3UTR GCA 90 bp GCAAGATCCCTCCCGAGAAAAGGACAATGTGAATTAGGGCCAGGATaGCTCGGGACAGTCGCCATACGGTTCCTCGGCCAGCCCATTCCA +
Preference number: 1 (lower is better)
Translates to: ARSLPRKGQCELGPG*LGTVAIRFLGQPIP
Trigger: TGGAATGGGCTGGCCGAGGAACCGTATGGCGACTGTCCCGAGGCATCCTGGCCCTAATTCACATTGTCCTTTTCTCGGGAGGGATCTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
3UTR-3UTR GCA 90 bp GCAAGATCCCTCCCGAGAAAAGGACAATGTGAATTAGGGCCAGGATGCCTCGGGACGGGTCTCCAGTCCTaGAGCTGGCTGCGAGTCCCG +
Preference number: 2 (lower is better)
Translates to: ARSLPRKGQCELGPGCLGTGLQS*SWLRVP
Trigger: CGGGACTCGCAGCCAGCTGCAGGACTGGAGACCCGT...CCCGAGGCATCCTGGCCCTAATTCACATTGTCCTTTTCTCGGGAGGGATCTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
3UTR GCA 72 bp TCGCCGCGGCTTTCCATCGGAACGGGTCTCCAGTCCTaGAGCTGGCTGCGAGTCCCGGCTGCCGCCGCTGTC +
Preference number: 3 (lower is better)
Translates to: SPRLSIGTGLQS*SWLRVPAAAAV
Trigger: GACAGCGGCGGCAGCCGGGACTCGCAGCCAGCTGCAGGACTGGAGACCCGTTCCGATGGAAAGCCGCGGCGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
3UTR GCA 72 bp GGGTCTCCAGTCCTGCAGCTGGCTGCGAGTCCCGGCTaGCGCCGCTGTCCGGTACACTGTAGAGCAGCTGCC +
Preference number: 3 (lower is better)
Translates to: GSPVLQLAASPG*RRCPVHCRAAA
Trigger: GGCAGCTGCTCTACAGTGTACCGGACAGCGGCGGCAGCCGGGACTCGCAGCCAGCTGCAGGACTGGAGACCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
3UTR TCA 72 bp GGTTCCTCGGCCAGCCCATTCCAAGTGTCCGTTTGCTaGCTCGGAGCCGGCATCTGCTCAGCACTCCGTGCC +
Preference number: 3 (lower is better)
Translates to: GSSASPFQVSVC*LGAGICSALRA
Trigger: GGCACGGAGTGCTGAGCAGATGCCGGCTCCGAGTCAGCAAACGGACACTTGGAATGGGCTGGCCGAGGAACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
3UTR TCA 72 bp CCGCAGCACTCTGTACTGTCCCTTGGAAGGGGCCCCTaGTGTCTGGGTTCCTGCAAGATCCCTCCCGAGAAA +
Preference number: 3 (lower is better)
Translates to: PQHSVLSLGRGP*CLGSCKIPPEK
Trigger: TTTCTCGGGAGGGATCTTGCAGGAACCCAGACATCAGGGGCCCCTTCCAAGGGACAGTACAGAGTGCTGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
3UTR GCA 72 bp CTCCCGAGAAAAGGACAATGTGAATTAGGGCCAGGATaGCTCGGGACAGTCGCCATACGGTTCCTCGGCCAG +
Preference number: 3 (lower is better)
Translates to: LPRKGQCELGPG*LGTVAIRFLGQ
Trigger: CTGGCCGAGGAACCGTATGGCGACTGTCCCGAGGCATCCTGGCCCTAATTCACATTGTCCTTTTCTCGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
3UTR TCA 72 bp GGTTCCTGCAAGATCCCTCCCGAGAAAAGGACAATGTaGATTAGGGCCAGGATGCCTCGGGACAGTCGCCAT +
Preference number: 3 (lower is better)
Translates to: GSCKIPPEKRTM*IRARMPRDSRH
Trigger: ATGGCGACTGTCCCGAGGCATCCTGGCCCTAATTCACATTGTCCTTTTCTCGGGAGGGATCTTGCAGGAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
3UTR TCA 72 bp CAAGAGAGAAGCCCTCTTCGGAAAAGAGGCCCAAGATaGGTTGTCCCAAGGCCCGCAGCACTCTGTACTGTC +
Preference number: 3 (lower is better)
Translates to: QERSPLRKRGPR*VVPRPAALCTV
Trigger: GACAGTACAGAGTGCTGCGGGCCTTGGGACAACTCATCTTGGGCCTCTTTTCCGAAGAGGGCTTCTCTCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
CDS-3UTR GCA 90 bp AACGGGTCTCCAGTCCTGCAGCTGGCTGCGAGTCCCGGCTGCCGCCGCTGTCCGTGCGTCTCCGTGAGCTaGAGCGAGGCGGCGAGGCCC +
Preference number: 4 (lower is better)
Translates to: NGSPVLQLAASPGCRRCPCVSVS*SEAARP
Trigger: GGGCCTCGCCGCCTCGCTGCAGCTCACGGAGACGCA...CGGACAGCGGCGGCAGCCGGGACTCGCAGCCAGCTGCAGGACTGGAGACCCGTT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
CDS-3UTR CCA 90 bp TCGGAACGGGTCTCCAGTCCTGCAGCTGGCTGCGAGTCCCGGCTGCCGCCGCTGAGCGCCCCGCGCCCTTaGCCTCGGCTGCTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: SERVSSPAAGCESRLPPLSAPRP*PRLLAG
Trigger: ACCTGCTAGCAGCCGAGGCCAAGGGCGCGGGGCGCT...CAGCGGCGGCAGCCGGGACTCGCAGCCAGCTGCAGGACTGGAGACCCGTTCCGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
CDS-3UTR CCA 90 bp AAGGCCCGCAGCACTCTGTACTGTCCCTTGGAAGGGGCCCCTGATGTCTGGGTTAGGCGCGAGCTGGTGTaGCGCGCCCGGGCTCGGTCA +
Preference number: 4 (lower is better)
Translates to: KARSTLYCPLEGAPDVWVRRELV*RARARS
Trigger: TGACCGAGCCCGGGCGCGCCACACCAGCTCGCGCCT...AACCCAGACATCAGGGGCCCCTTCCAAGGGACAGTACAGAGTGCTGCGGGCCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
CDS-3UTR TCA 90 bp AAGGCCCGCAGCACTCTGTACTGTCCCTTGGAAGGGGCCCCTGATGTCTGGGTTCTAGCAGGTTCTCGATaGGGAAGGAGGAGGCGCGAG +
Preference number: 4 (lower is better)
Translates to: KARSTLYCPLEGAPDVWVLAGSR*GRRRRE
Trigger: CTCGCGCCTCCTCCTTCCTCATCGAGAACCTGCTAG...AACCCAGACATCAGGGGCCCCTTCCAAGGGACAGTACAGAGTGCTGCGGGCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
CDS GCA 90 bp CCGCGGAACGGTTCCCGGCCCGGGGCACCGCGGCCAGGCGCTCTCTaGGCGGCCCATCTCCTCGCCGGTCTCCGGAGAGTCCCGGTCGCT +
Preference number: 5 (lower is better)
Translates to: PRNGSRPGAPRPGAL*AAHLLAGLRRVPVA
Trigger: AGCGACCGGGACTCTCCGGAGACCGGCGAGGAGATGGGCCGCGCAGAGAGCGCCTGGCCGCGGTGCCCCGGGCCGGGAACCGTTCCGCGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
CDS-3UTR CAA 90 bp TCGGAACGGGTCTCCAGTCCTGCAGCTGGCTGCGAGTCCCGGCTGCCGCCGCTGGTGGGTACCACCGCGTaGTACCTCCGCAGCCGAGCG +
Preference number: 5 (lower is better)
Translates to: SERVSSPAAGCESRLPPLVGTTA*YLRSRA
Trigger: CGCTCGGCTGCGGAGGTACAACGCGGTGGTACCCAC...CAGCGGCGGCAGCCGGGACTCGCAGCCAGCTGCAGGACTGGAGACCCGTTCCGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
CDS CCA 90 bp GGGTCGTCGTCGTCCTCTTCCTCTTCCTCGCGGACGCCATCGCCCTaGGTTGAGCGCCCCGCGCCCTTGGCCTCGGCTGCTAGCAGGTTC +
Preference number: 5 (lower is better)
Translates to: GSSSSSSSSSRTPSP*VERPAPLASAASRF
Trigger: GAACCTGCTAGCAGCCGAGGCCAAGGGCGCGGGGCGCTCAACCCAGGGCGATGGCGTCCGCGAGGAAGAGGAAGAGGACGACGACGACCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087674.6
ENSMUST00000172923.2
CDS GCA 72 bp GGTTCCCGGCCCGGGGCACCGCGGCCAGGCGCTCTCTaGGCGGCCCATCTCCTCGCCGGTCTCCGGAGAGTC +
Preference number: 6 (lower is better)
Translates to: GSRPGAPRPGAL*AAHLLAGLRRV
Trigger: GACTCTCCGGAGACCGGCGAGGAGATGGGCCGCGCAGAGAGCGCCTGGCCGCGGTGCCCCGGGCCGGGAACC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
CDS CAA 72 bp CTCCGTAGCCGCCGTGCACCCGTGGGTACCACCGCGTaGTACCTCCGCAGCCGAGCGCGAAGGGCGGGCCGG +
Preference number: 6 (lower is better)
Translates to: LRSRRAPVGTTA*YLRSRARRAGR
Trigger: CCGGCCCGCCCTTCGCGCTCGGCTGCGGAGGTACAACGCGGTGGTACCCACGGGTGCACGGCGGCTACGGAG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087674.6
ENSMUST00000172923.2
CDS CAA 90 bp TTAGACCACCTCCGTAGCCGCCGTGCACCCGTGGGTACCACCGCGTaGTACCTCCGCAGCCGAGCGCGAAGGGCGGGCCGGGCCCAGGAG +
Preference number: 6 (lower is better)
Translates to: LDHLRSRRAPVGTTA*YLRSRARRAGRAQE
Trigger: CTCCTGGGCCCGGCCCGCCCTTCGCGCTCGGCTGCGGAGGTACAACGCGGTGGTACCCACGGGTGCACGGCGGCTACGGAGGTGGTCTAA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087674.6
ENSMUST00000172923.2
CDS CCA 72 bp TCGTCCTCTTCCTCTTCCTCGCGGACGCCATCGCCCTaGGTTGAGCGCCCCGCGCCCTTGGCCTCGGCTGCT +
Preference number: 6 (lower is better)
Translates to: SSSSSSSRTPSP*VERPAPLASAA
Trigger: AGCAGCCGAGGCCAAGGGCGCGGGGCGCTCAACCCAGGGCGATGGCGTCCGCGAGGAAGAGGAAGAGGACGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087674.6
ENSMUST00000172923.2
CDS CAA 90 bp TCTTCCTCGCGGACGCCATCGCCCTGGGTTGAGCGCCCCGCGCCCTaGGCCTCGGCTGCTAGCAGGTTCTCGATGAGGAAGGAGGAGGCG +
Preference number: 6 (lower is better)
Translates to: SSSRTPSPWVERPAP*ASAASRFSMRKEEA
Trigger: CGCCTCCTCCTTCCTCATCGAGAACCTGCTAGCAGCCGAGGCCAAGGGCGCGGGGCGCTCAACCCAGGGCGATGGCGTCCGCGAGGAAGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087674.6
ENSMUST00000172923.2
CDS CAA 90 bp CTGCGCGGCCCATCTCCTCGCCGGTCTCCGGAGAGTCCCGGTCGCTaGTGTCAGGACTTAGACCACCTCCGTAGCCGCCGTGCACCCGTG +
Preference number: 6 (lower is better)
Translates to: LRGPSPRRSPESPGR*CQDLDHLRSRRAPV
Trigger: CACGGGTGCACGGCGGCTACGGAGGTGGTCTAAGTCCTGACACAAGCGACCGGGACTCTCCGGAGACCGGCGAGGAGATGGGCCGCGCAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6
CDS CAA 72 bp CGGACGCCATCGCCCTGGGTTGAGCGCCCCGCGCCCTaGGCCTCGGCTGCTAGCAGGTTCTCGATGAGGAAG +
Preference number: 6 (lower is better)
Translates to: RTPSPWVERPAP*ASAASRFSMRK
Trigger: CTTCCTCATCGAGAACCTGCTAGCAGCCGAGGCCAAGGGCGCGGGGCGCTCAACCCAGGGCGATGGCGTCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087674.6
ENSMUST00000172923.2
CDS CAA 72 bp CCATCTCCTCGCCGGTCTCCGGAGAGTCCCGGTCGCTaGTGTCAGGACTTAGACCACCTCCGTAGCCGCCGT +
Preference number: 6 (lower is better)
Translates to: PSPRRSPESPGR*CQDLDHLRSRR
Trigger: ACGGCGGCTACGGAGGTGGTCTAAGTCCTGACACAAGCGACCGGGACTCTCCGGAGACCGGCGAGGAGATGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087674.6