Pregenerated sensors for HMOX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004070Ensembl transcript IDs: ENSMUST00000004172.15, ENSMUST00000118885.8, ENSMUST00000120232.8, ENSMUST00000121529.2, ENSMUST00000140367.8, ENSMUST00000154117.2
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCACAAACCCTGTGTGTATGGGCATCTCACTCCCAGCATGGCAATaGCCATTCCAAGCACTGCTAAGAAAGCAATGTACCCAGGCCTCC | + |
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Preference number: 1 (lower is better) Translates to: PTNPVCMGISLPAWQ*PFQALLRKQCTQAS Trigger: GGAGGCCTGGGTACATTGCTTTCTTAGCAGTGCTTGGAATGGTCATTGCCATGCTGGGAGTGAGATGCCCATACACACAGGGTTTGTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR TCA 90 bp | GTTATGCAGAATAAGCTCTTTAGACTATCAAAAGGCCTAGAAAACTaGGCCATCATCAGCTGGCATGACCCTTTCCCACAAACCCTGTGT | + |
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Preference number: 1 (lower is better) Translates to: VMQNKLFRLSKGLEN*AIISWHDPFPQTLC Trigger: ACACAGGGTTTGTGGGAAAGGGTCATGCCAGCTGATGATGGCTCAGTTTTCTAGGCCTTTTGATAGTCTAAAGAGCTTATTCTGCATAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR-3UTR TCA 90 bp | GTGGCGTTTGTTTTTAGAGTGTTATGGCAGGCACACCAGTCAGCTGAGACACATCATCATCAGCTGGCATaGCCCTTTCCCACAAACCCT | + |
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Preference number: 2 (lower is better) Translates to: VAFVFRVLWQAHQSAETHHHQLA*PFPTNP Trigger: AGGGTTTGTGGGAAAGGGTCATGCCAGCTGATGATG...ATGTGTCTCAGCTGACTGGTGTGCCTGCCATAACACTCTAAAAACAAACGCCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR-3UTR TCA 90 bp | GTGGCGTTTGTTTTTAGAGTGTTATGGCAGGCACACCAGTCAGCTGAGACACATAAAGGCCTAGAAAACTaGGCCATCATCAGCTGGCAT | + |
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Preference number: 2 (lower is better) Translates to: VAFVFRVLWQAHQSAETHKGLEN*AIISWH Trigger: ATGCCAGCTGATGATGGCTCAGTTTTCTAGGCCTTT...ATGTGTCTCAGCTGACTGGTGTGCCTGCCATAACACTCTAAAAACAAACGCCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR-3UTR CCA 90 bp | CCCAGGAAGGAGGGAAGTGTGTGGCGTTTGTTTTTAGAGTGTTATGGCAGGCACATAGAACAGGTCACTTaGGGTAGGATGCAAACAACA | + |
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Preference number: 2 (lower is better) Translates to: PRKEGSVWRLFLECYGRHIEQVT*GRMQTT Trigger: TGTTGTTTGCATCCTACCCCAAGTGACCTGTTCTAT...GTGCCTGCCATAACACTCTAAAAACAAACGCCACACACTTCCCTCCTTCCTGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR-3UTR CCA 90 bp | GTGGCGTTTGTTTTTAGAGTGTTATGGCAGGCACACCAGTCAGCTGAGACACATGTGACAGCCTTTATCTaGTGTATATCTGGCTGGCAG | + |
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Preference number: 2 (lower is better) Translates to: VAFVFRVLWQAHQSAETHVTAFI*CISGWQ Trigger: CTGCCAGCCAGATATACACCAGATAAAGGCTGTCAC...ATGTGTCTCAGCTGACTGGTGTGCCTGCCATAACACTCTAAAAACAAACGCCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR-3UTR GCA 90 bp | CAAACCCTGTGTGTATGGGCATCTCACTCCCAGCATGGCAATGACCATTCCAAGCTGGCTTTTATTGGTTaGTTGTTTTCTCAAACCCAG | + |
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Preference number: 2 (lower is better) Translates to: QTLCVWASHSQHGNDHSKLAFIG*LFSQTQ Trigger: CTGGGTTTGAGAAAACAAGCAACCAATAAAAGCCAG...CTTGGAATGGTCATTGCCATGCTGGGAGTGAGATGCCCATACACACAGGGTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR-3UTR TCA 90 bp | TCCTATCCCAGGAAGGAGGGAAGTGTGTGGCGTTTGTTTTTAGAGTGTTATGGCTGGCTGTTAATAGAGTaGCAGCCTTTATCTGGTGTA | + |
|
Preference number: 2 (lower is better) Translates to: SYPRKEGSVWRLFLECYGWLLIE*QPLSGV Trigger: TACACCAGATAAAGGCTGTCACTCTATTAACAGCCA...GCCATAACACTCTAAAAACAAACGCCACACACTTCCCTCCTTCCTGGGATAGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR-3UTR CCA 90 bp | TCCTATCCCAGGAAGGAGGGAAGTGTGTGGCGTTTGTTTTTAGAGTGTTATGGCAGAGGCTCTAGTGTCTaGCTTTTATTGGTTGCTTGT | + |
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Preference number: 2 (lower is better) Translates to: SYPRKEGSVWRLFLECYGRGSSV*LLLVAC Trigger: ACAAGCAACCAATAAAAGCCAGACACTAGAGCCTCT...GCCATAACACTCTAAAAACAAACGCCACACACTTCCCTCCTTCCTGGGATAGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR-3UTR TCA 90 bp | GCTAATAGACTTATTAGGGAGATCCCGGTTATGCAGAATAAGCTCTTTAGACTACTCCCAGCATGGCAATaGCCATTCCAAGCACTGCTA | + |
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Preference number: 2 (lower is better) Translates to: ANRLIREIPVMQNKLFRLLPAWQ*PFQALL Trigger: TAGCAGTGCTTGGAATGGTCATTGCCATGCTGGGAG...TAGTCTAAAGAGCTTATTCTGCATAACCGGGATCTCCCTAATAAGTCTATTAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR-3UTR CCA 90 bp | GCTGTTAATAGAGTGACAGCCTTTATCTGGTGTATATCTGGCTGGCAGAGAAAAGTGTCTGGCTTTTATTaGTTGCTTGTTTTCTCAAAC | + |
|
Preference number: 2 (lower is better) Translates to: AVNRVTAFIWCISGWQRKVSGFY*LLVFSN Trigger: GTTTGAGAAAACAAGCAACCAATAAAAGCCAGACAC...TTTTCTCTGCCAGCCAGATATACACCAGATAAAGGCTGTCACTCTATTAACAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR CCA 72 bp | AGCTGGCATGACCCTTTCCCACAAACCCTGTGTGTATaGGCATCTCACTCCCAGCATGGCAATGACCATTCC | + |
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Preference number: 3 (lower is better) Translates to: SWHDPFPQTLCV*ASHSQHGNDHS Trigger: GGAATGGTCATTGCCATGCTGGGAGTGAGATGCCCATACACACAGGGTTTGTGGGAAAGGGTCATGCCAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR CCA 72 bp | GGAGGGAAGTGTGTGGCGTTTGTTTTTAGAGTGTTATaGCAGGCACACCAGTCAGCTGAGACACATCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: GGKCVAFVFRVL*QAHQSAETHQA Trigger: AGCCTGATGTGTCTCAGCTGACTGGTGTGCCTGCCATAACACTCTAAAAACAAACGCCACACACTTCCCTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR TCA 72 bp | AAAAGGCCTAGAAAACTGAGCCATCATCAGCTGGCATaGCCCTTTCCCACAAACCCTGTGTGTATGGGCATC | + |
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Preference number: 3 (lower is better) Translates to: KRPRKLSHHQLA*PFPTNPVCMGI Trigger: GATGCCCATACACACAGGGTTTGTGGGAAAGGGTCATGCCAGCTGATGATGGCTCAGTTTTCTAGGCCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR-3UTR CAA 90 bp | CCACAAACCCTGTGTGTATGGGCATCTCACTCCCAGCATGGCAATGACCATTCCGCTTTTATTGGTTGCTaGTTTTCTCAAACCCAGCAT | + |
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Preference number: 3 (lower is better) Translates to: PQTLCVWASHSQHGNDHSAFIGC*FSQTQH Trigger: ATGCTGGGTTTGAGAAAACAAGCAACCAATAAAAGC...GGAATGGTCATTGCCATGCTGGGAGTGAGATGCCCATACACACAGGGTTTGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR-3UTR CAA 90 bp | CCCTGTGTGTATGGGCATCTCACTCCCAGCATGGCAATGACCATTCCAAGCACTAGTGTCTGGCTTTTATaGGTTGCTTGTTTTCTCAAA | + |
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Preference number: 3 (lower is better) Translates to: PCVYGHLTPSMAMTIPSTSVWLL*VACFLK Trigger: TTTGAGAAAACAAGCAACCAATAAAAGCCAGACACT...AGTGCTTGGAATGGTCATTGCCATGCTGGGAGTGAGATGCCCATACACACAGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR TCA 72 bp | AATAAGCTCTTTAGACTATCAAAAGGCCTAGAAAACTaGGCCATCATCAGCTGGCATGACCCTTTCCCACAA | + |
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Preference number: 3 (lower is better) Translates to: NKLFRLSKGLEN*AIISWHDPFPQ Trigger: TTGTGGGAAAGGGTCATGCCAGCTGATGATGGCTCAGTTTTCTAGGCCTTTTGATAGTCTAAAGAGCTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR-3UTR CAA 90 bp | GCCATGAAAGAGGATGTCCATTTGTATGCTGTTTCTGAGGGACTCTATCCTATCTCTGGCTTTTATTGGTaGCTTGTTTTCTCAAACCCA | + |
|
Preference number: 3 (lower is better) Translates to: AMKEDVHLYAVSEGLYPISGFYW*LVFSNP Trigger: TGGGTTTGAGAAAACAAGCAACCAATAAAAGCCAGA...GATAGGATAGAGTCCCTCAGAAACAGCATACAAATGGACATCCTCTTTCATGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CCA 90 bp | ACCCTGTGTGTATGGGCATCTCACTCCCAGCATGGCAATGACCATTCCAAGCACCGATCCACATACTTCTaGGCAGCCTCAGAGCACTTC | + |
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Preference number: 4 (lower is better) Translates to: TLCVWASHSQHGNDHSKHRSTYF*AASEHF Trigger: GAAGTGCTCTGAGGCTGCCCAGAAGTATGTGGATCG...GTGCTTGGAATGGTCATTGCCATGCTGGGAGTGAGATGCCCATACACACAGGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR TCA 90 bp | CATGACCCTTTCCCACAAACCCTGTGTGTATGGGCATCTCACTCCCAGCATGGCTTCCTCCTCAAGGGCTaGGTATGTGAAGTAAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: HDPFPQTLCVWASHSQHGFLLKG*VCEVKC Trigger: GCACTTTACTTCACATACTCAGCCCTTGAGGAGGAA...GCCATGCTGGGAGTGAGATGCCCATACACACAGGGTTTGTGGGAAAGGGTCATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR TCA 90 bp | TCCTATCCCAGGAAGGAGGGAAGTGTGTGGCGTTTGTTTTTAGAGTGTTATGGCCAGTACCTGGCCTCCTaGAAGGTCCCCCATGTAACG | + |
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Preference number: 4 (lower is better) Translates to: SYPRKEGSVWRLFLECYGQYLAS*KVPHVT Trigger: CGTTACATGGGGGACCTTTCAGGAGGCCAGGTACTG...GCCATAACACTCTAAAAACAAACGCCACACACTTCCCTCCTTCCTGGGATAGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR GCA 90 bp | CCACAAACCCTGTGTGTATGGGCATCTCACTCCCAGCATGGCAATGACCATTCCTCAGAGCACTTCACCTaGTCCTCCCAGTTTTCACCA | + |
|
Preference number: 4 (lower is better) Translates to: PQTLCVWASHSQHGNDHSSEHFT*SSQFSP Trigger: TGGTGAAAACTGGGAGGAGCAGGTGAAGTGCTCTGA...GGAATGGTCATTGCCATGCTGGGAGTGAGATGCCCATACACACAGGGTTTGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR GCA 90 bp | TATCTGGTGTATATCTGGCTGGCAGAGAAAATGCTGTTAGGCAGAGGCTCTAGTGGGTCCCTTCCCCAGTaGTGGGAAGTTTTAGTGCCC | + |
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Preference number: 4 (lower is better) Translates to: YLVYIWLAEKMLLGRGSSGSLPQ*WEVLVP Trigger: GGGCACTAAAACTTCCCAGCACTGGGGAAGGGACCC...ACTAGAGCCTCTGCCTAACAGCATTTTCTCTGCCAGCCAGATATACACCAGATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CCA 90 bp | TCCTATCCCAGGAAGGAGGGAAGTGTGTGGCGTTTGTTTTTAGAGTGTTATGGCACCTTCTTCAGTACCTaGCCTCCTGAAAGGTCCCCC | + |
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Preference number: 4 (lower is better) Translates to: SYPRKEGSVWRLFLECYGTFFST*PPERSP Trigger: GGGGGACCTTTCAGGAGGCCAGGTACTGAAGAAGGT...GCCATAACACTCTAAAAACAAACGCCACACACTTCCCTCCTTCCTGGGATAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR GCA 90 bp | TATCCCAGGAAGGAGGGAAGTGTGTGGCGTTTGTTTTTAGAGTGTTATGGCAGGCTGGGTGGTCCTTGTTaGGGTCCATTTCCTCCTCAA | + |
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Preference number: 4 (lower is better) Translates to: YPRKEGSVWRLFLECYGRLGGPC*GPFPPQ Trigger: TTGAGGAGGAAATGGACCGCAACAAGGACCACCCAG...CCTGCCATAACACTCTAAAAACAAACGCCACACACTTCCCTCCTTCCTGGGATA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR CAA 72 bp | CTATCCTATCCCAGGAAGGAGGGAAGTGTGTGGCGTTaGTTTTTAGAGTGTTATGGCAGGCACACCAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: LSYPRKEGSVWR*FLECYGRHTSQ Trigger: CTGACTGGTGTGCCTGCCATAACACTCTAAAAACAAACGCCACACACTTCCCTCCTTCCTGGGATAGGATAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR GCA 90 bp | CCACAAACCCTGTGTGTATGGGCATCTCACTCCCAGCATGGCAATGACCATTCCGAGCTCAGAAAGGTCTaGCATTTTGGTATGGTTTTC | + |
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Preference number: 4 (lower is better) Translates to: PQTLCVWASHSQHGNDHSELRKV*HFGMVF Trigger: GAAAACCATACCAAAATGGCAGACCTTTCTGAGCTC...GGAATGGTCATTGCCATGCTGGGAGTGAGATGCCCATACACACAGGGTTTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR GCA 90 bp | TTGGCAAGGAGTGCCATGAAAGAGGATGTCCATTTGTATGCTGTTTCTGAGGGATCTGGAAGGGGCAGTTaGTGCCTCCTAGTGTACCTT | + |
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Preference number: 4 (lower is better) Translates to: LARSAMKEDVHLYAVSEGSGRGS*CLLVYL Trigger: AAGGTACACTAGGAGGCAGCAACTGCCCCTTCCAGA...TCCCTCAGAAACAGCATACAAATGGACATCCTCTTTCATGGCACTCCTTGCCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CCA 90 bp | AGGATGTCCATTTGTATGCTGTTTCTGAGGGACTCTATCCTATCCCAGGAAGGATCCCTTCCCCAGTGCTaGGAAGTTTTAGTGCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: RMSICMLFLRDSILSQEGSLPQC*EVLVPS Trigger: AGAGGGCACTAAAACTTCCCAGCACTGGGGAAGGGA...TCCTTCCTGGGATAGGATAGAGTCCCTCAGAAACAGCATACAAATGGACATCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CCA 90 bp | TCCTATCCCAGGAAGGAGGGAAGTGTGTGGCGTTTGTTTTTAGAGTGTTATGGCAGCATGGAGCCAGCCTaGTCCAGTTCACTGAATATC | + |
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Preference number: 4 (lower is better) Translates to: SYPRKEGSVWRLFLECYGSMEPA*SSSLNI Trigger: GATATTCAGTGAACTGGACCAGGCTGGCTCCATGCT...GCCATAACACTCTAAAAACAAACGCCACACACTTCCCTCCTTCCTGGGATAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR TCA 90 bp | TTGGCAAGGAGTGCCATGAAAGAGGATGTCCATTTGTATGCTGTTTCTGAGGGACAAGGGCTGAGTATGTaGAGTAAAGTGCAGTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: LARSAMKEDVHLYAVSEGQGLSM*SKVQWW Trigger: CCACCACTGCACTTTACTTCACATACTCAGCCCTTG...TCCCTCAGAAACAGCATACAAATGGACATCCTCTTTCATGGCACTCCTTGCCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR TCA 90 bp | TTGGCAAGGAGTGCCATGAAAGAGGATGTCCATTTGTATGCTGTTTCTGAGGGAAATACTTCATGTCCTTaGTCAGTGCTGCCTTCCGGT | + |
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Preference number: 4 (lower is better) Translates to: LARSAMKEDVHLYAVSEGNTSCP*SVLPSG Trigger: ACCGGAAGGCAGCACTGATCAAGGACATGAAGTATT...TCCCTCAGAAACAGCATACAAATGGACATCCTCTTTCATGGCACTCCTTGCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR GCA 90 bp | GTGGCGTTTGTTTTTAGAGTGTTATGGCAGGCACACCAGTCAGCTGAGACACATGTATGTGAAGTAAAGTaGAGTGGTGGCCAGCTTAAA | + |
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Preference number: 4 (lower is better) Translates to: VAFVFRVLWQAHQSAETHVCEVK*SGGQLK Trigger: TTTAAGCTGGCCACCACTGCACTTTACTTCACATAC...ATGTGTCTCAGCTGACTGGTGTGCCTGCCATAACACTCTAAAAACAAACGCCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CCA 90 bp | GCCATGAAAGAGGATGTCCATTTGTATGCTGTTTCTGAGGGACTCTATCCTATCAGTTTTAGTGCCCTCTaGGCAACCTTCTTCAGTACC | + |
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Preference number: 4 (lower is better) Translates to: AMKEDVHLYAVSEGLYPISFSAL*ATFFST Trigger: GGTACTGAAGAAGGTTGCCCAGAGGGCACTAAAACT...GATAGGATAGAGTCCCTCAGAAACAGCATACAAATGGACATCCTCTTTCATGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CCA 90 bp | TTGGCAAGGAGTGCCATGAAAGAGGATGTCCATTTGTATGCTGTTTCTGAGGGAAACTGCTTGAATTGCTaGGCATTGTCCACATGCTCA | + |
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Preference number: 4 (lower is better) Translates to: LARSAMKEDVHLYAVSEGNCLNC*ALSTCS Trigger: TGAGCATGTGGACAATGCCCAGCAATTCAAGCAGTT...TCCCTCAGAAACAGCATACAAATGGACATCCTCTTTCATGGCACTCCTTGCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CCA 90 bp | CTGTTAGGCAGAGGCTCTAGTGTCTGGCTTTTATTGGTTGCTTGTTTTCTCAAATTTCTCTTGCTAGCATaGAGCCAGCCTGGTCCAGTT | + |
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Preference number: 4 (lower is better) Translates to: LLGRGSSVWLLLVACFLKFLLLA*SQPGPV Trigger: AACTGGACCAGGCTGGCTCCATGCTAGCAAGAGAAA...TTTGAGAAAACAAGCAACCAATAAAAGCCAGACACTAGAGCCTCTGCCTAACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| 3UTR CAA 72 bp | AAGTTGGCAAGGAGTGCCATGAAAGAGGATGTCCATTaGTATGCTGTTTCTGAGGGACTCTATCCTATCCCA | + |
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Preference number: 4 (lower is better) Translates to: KLARSAMKEDVH*YAVSEGLYPIP Trigger: TGGGATAGGATAGAGTCCCTCAGAAACAGCATACAAATGGACATCCTCTTTCATGGCACTCCTTGCCAACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CCA 90 bp | GGCAGAGGCTCTAGTGTCTGGCTTTTATTGGTTGCTTGTTTTCTCAAACCCAGCATGGTTTTCCTTTTCTaGTGCCATAGAGTTCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: GRGSSVWLLLVACFLKPSMVFLF*CHRVLL Trigger: GAGAAGAACTCTATGGCACCAGAAAAGGAAAACCAT...GCTGGGTTTGAGAAAACAAGCAACCAATAAAAGCCAGACACTAGAGCCTCTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR TCA 90 bp | GTGGCGTTTGTTTTTAGAGTGTTATGGCAGGCACACCAGTCAGCTGAGACACATCTTTCAAGAAGTCTTTaGCAAACTGGGTATTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: VAFVFRVLWQAHQSAETHLSRSL*QTGYFL Trigger: CAGAAAATACCCAGTTTGTCAAAGACTTCTTGAAAG...ATGTGTCTCAGCTGACTGGTGTGCCTGCCATAACACTCTAAAAACAAACGCCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR TCA 90 bp | AGACTTATTAGGGAGATCCCGGTTATGCAGAATAAGCTCTTTAGACTATCAAAACGCGGTAGAACTGCTTaGATTGCTGGGCATTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: RLIREIPVMQNKLFRLSKRGRTA*IAGHCP Trigger: TGGACAATGCCCAGCAATTCAAGCAGTTCTACCGCG...TTTTGATAGTCTAAAGAGCTTATTCTGCATAACCGGGATCTCCCTAATAAGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR GCA 90 bp | GCTAATAGACTTATTAGGGAGATCCCGGTTATGCAGAATAAGCTCTTTAGACTATTCTGCTCGGTCATGTaGTTCCTTGGTCCCTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: ANRLIREIPVMQNKLFRLFCSVM*FLGPFL Trigger: AAGGAAGGGACCAAGGAAGCACATGACCGAGCAGAA...TAGTCTAAAGAGCTTATTCTGCATAACCGGGATCTCCCTAATAAGTCTATTAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CCA 90 bp | AGACTTATTAGGGAGATCCCGGTTATGCAGAATAAGCTCTTTAGACTATCAAAAGGTCATGTGCTTCCTTaGTCCCTTCCTTCAGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: RLIREIPVMQNKLFRLSKGHVLP*SLPSGA Trigger: AGCTCCTGAAGGAAGGGACCAAGGAAGCACATGACC...TTTTGATAGTCTAAAGAGCTTATTCTGCATAACCGGGATCTCCCTAATAAGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CCA 90 bp | TTAGGCAGAGGCTCTAGTGTCTGGCTTTTATTGGTTGCTTGTTTTCTCAAACCCAAGTCTTTGACAAACTaGGTATTTTCTGCTCGGTCA | + |
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Preference number: 4 (lower is better) Translates to: LGRGSSVWLLLVACFLKPKSLTN*VFSARS Trigger: TGACCGAGCAGAAAATACCCAGTTTGTCAAAGACTT...GGGTTTGAGAAAACAAGCAACCAATAAAAGCCAGACACTAGAGCCTCTGCCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR TCA 90 bp | GCTGTTAATAGAGTGACAGCCTTTATCTGGTGTATATCTGGCTGGCAGAGAAAACCTGGTCCAGTTCACTaGATATCTGCATGTTATATT | + |
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Preference number: 4 (lower is better) Translates to: AVNRVTAFIWCISGWQRKPGPVH*ISACYI Trigger: AATATAACATGCAGATATTCAGTGAACTGGACCAGG...TTTTCTCTGCCAGCCAGATATACACCAGATAAAGGCTGTCACTCTATTAACAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CCA 90 bp | ATTAGGGAGATCCCGGTTATGCAGAATAAGCTCTTTAGACTATCAAAAGGCCTACCACAATCCTCTCTTTaGTCTTCAAATTCAGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: IREIPVMQNKLFRLSKGLPQSSL*SSNSGP Trigger: TGGACCTGAATTTGAAGACCAAAGAGAGGATTGTGG...TAGGCCTTTTGATAGTCTAAAGAGCTTATTCTGCATAACCGGGATCTCCCTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR GCA 90 bp | GCTAATAGACTTATTAGGGAGATCCCGGTTATGCAGAATAAGCTCTTTAGACTAAAACTGGGTATTTTCTaGTCGGTCATGTGCTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: ANRLIREIPVMQNKLFRLKLGIF*SVMCFL Trigger: AAGGAAGCACATGACCGAGCAGAAAATACCCAGTTT...TAGTCTAAAGAGCTTATTCTGCATAACCGGGATCTCCCTAATAAGTCTATTAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS GCA 90 bp | GCCAAGAGTCCAGCTACCAAGGCCACACTGGCAGCCAGAATGAGCTaGAGGCTAGGCTTCCTCAGCACAGCCACGGTTGTCTGGAAGGGG | + |
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Preference number: 5 (lower is better) Translates to: AKSPATKATLAARMS*RLGFLSTATVVWKG Trigger: CCCCTTCCAGACAACCGTGGCTGTGCTGAGGAAGCCTAGCCTGCAGCTCATTCTGGCTGCCAGTGTGGCCTTGGTAGCTGGACTCTTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 |
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| CDS-3UTR CAA 90 bp | CCCTGTGTGTATGGGCATCTCACTCCCAGCATGGCAATGACCATTCCAAGCACTAAGGCTGGGTGGTCCTaGTTGCGGTCCATTTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: PCVYGHLTPSMAMTIPSTKAGWS*LRSISS Trigger: GGAGGAAATGGACCGCAACAAGGACCACCCAGCCTT...AGTGCTTGGAATGGTCATTGCCATGCTGGGAGTGAGATGCCCATACACACAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS CCA 90 bp | TGTCCACATGCTCAAACAGGTAGAATTGGGTCCCTTCCCCAGTGCTaGGAAGTTTTAGTGCCCTCTGGGCAACCTTCTTCAGTACCTGGC | + |
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Preference number: 5 (lower is better) Translates to: CPHAQTGRIGSLPQC*EVLVPSGQPSSVPG Trigger: GCCAGGTACTGAAGAAGGTTGCCCAGAGGGCACTAAAACTTCCCAGCACTGGGGAAGGGACCCAATTCTACCTGTTTGAGCATGTGGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 |
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| CDS-3UTR CAA 90 bp | GGCAGAGGCTCTAGTGTCTGGCTTTTATTGGTTGCTTGTTTTCTCAAACCCAGCGCTGGGTGGTCCTTGTaGCGGTCCATTTCCTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: GRGSSVWLLLVACFLKPSAGWSL*RSISSS Trigger: TGAGGAGGAAATGGACCGCAACAAGGACCACCCAGC...GCTGGGTTTGAGAAAACAAGCAACCAATAAAAGCCAGACACTAGAGCCTCTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CAA 90 bp | TATCCCAGGAAGGAGGGAAGTGTGTGGCGTTTGTTTTTAGAGTGTTATGGCAGGCCTCCAGGGTTTCTCTaGCTAGCATGGAGCCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: YPRKEGSVWRLFLECYGRPPGFL*LAWSQP Trigger: AGGCTGGCTCCATGCTAGCAAGAGAAACCCTGGAGG...CCTGCCATAACACTCTAAAAACAAACGCCACACACTTCCCTCCTTCCTGGGATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS GCA 90 bp | CATTGTCCACATGCTCAAACAGGTAGAATTGGGTCCCTTCCCCAGTaGTGGGAAGTTTTAGTGCCCTCTGGGCAACCTTCTTCAGTACCT | + |
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Preference number: 5 (lower is better) Translates to: HCPHAQTGRIGSLPQ*WEVLVPSGQPSSVP Trigger: AGGTACTGAAGAAGGTTGCCCAGAGGGCACTAAAACTTCCCAGCACTGGGGAAGGGACCCAATTCTACCTGTTTGAGCATGTGGACAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 |
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| CDS-3UTR CAA 90 bp | GCCATGAAAGAGGATGTCCATTTGTATGCTGTTTCTGAGGGACTCTATCCTATCCGGTCATGTGCTTCCTaGGTCCCTTCCTTCAGGAGC | + |
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Preference number: 5 (lower is better) Translates to: AMKEDVHLYAVSEGLYPIRSCAS*VPSFRS Trigger: GCTCCTGAAGGAAGGGACCAAGGAAGCACATGACCG...GATAGGATAGAGTCCCTCAGAAACAGCATACAAATGGACATCCTCTTTCATGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CAA 90 bp | AGGATGTCCATTTGTATGCTGTTTCTGAGGGACTCTATCCTATCCCAGGAAGGACTCAAACAGGTAGAATaGGGTCCCTTCCCCAGTGCT | + |
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Preference number: 5 (lower is better) Translates to: RMSICMLFLRDSILSQEGLKQVE*GPFPSA Trigger: AGCACTGGGGAAGGGACCCAATTCTACCTGTTTGAG...TCCTTCCTGGGATAGGATAGAGTCCCTCAGAAACAGCATACAAATGGACATCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CAA 90 bp | GCCATGAAAGAGGATGTCCATTTGTATGCTGTTTCTGAGGGACTCTATCCTATCGTAGAACTGCTTGAATaGCTGGGCATTGTCCACATG | + |
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Preference number: 5 (lower is better) Translates to: AMKEDVHLYAVSEGLYPIVELLE*LGIVHM Trigger: CATGTGGACAATGCCCAGCAATTCAAGCAGTTCTAC...GATAGGATAGAGTCCCTCAGAAACAGCATACAAATGGACATCCTCTTTCATGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CAA 90 bp | AGGATGTCCATTTGTATGCTGTTTCTGAGGGACTCTATCCTATCCCAGGAAGGATCCACAATCCTCTCTTaGGTCTTCAAATTCAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: RMSICMLFLRDSILSQEGSTILS*VFKFRS Trigger: GGACCTGAATTTGAAGACCAAAGAGAGGATTGTGGA...TCCTTCCTGGGATAGGATAGAGTCCCTCAGAAACAGCATACAAATGGACATCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS GCA 90 bp | CTTAATGTTTCCTTTCAAGAAGTCTTTGACAAACTGGGTATTTTCTaGTCGGTCATGTGCTTCCTTGGTCCCTTCCTTCAGGAGCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: LNVSFQEVFDKLGIF*SVMCFLGPFLQELR Trigger: TCTGAGCTCCTGAAGGAAGGGACCAAGGAAGCACATGACCGAGCAGAAAATACCCAGTTTGTCAAAGACTTCTTGAAAGGAAACATTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 ENSMUST00000140367.8 |
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| CDS-3UTR CAA 90 bp | CTGTTAGGCAGAGGCTCTAGTGTCTGGCTTTTATTGGTTGCTTGTTTTCTCAAATATTCAAAGGCTTTATaGGCCTCCTCCACAATCCTC | + |
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Preference number: 5 (lower is better) Translates to: LLGRGSSVWLLLVACFLKYSKAL*ASSTIL Trigger: GAGGATTGTGGAGGAGGCCAATAAAGCCTTTGAATA...TTTGAGAAAACAAGCAACCAATAAAAGCCAGACACTAGAGCCTCTGCCTAACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CAA 90 bp | TTAGGCAGAGGCTCTAGTGTCTGGCTTTTATTGGTTGCTTGTTTTCTCAAACCCGAAAGGTCTGCCATTTaGGTATGGTTTTCCTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: LGRGSSVWLLLVACFLKPERSAI*VWFSFS Trigger: AGAAAAGGAAAACCATACCAAAATGGCAGACCTTTC...GGGTTTGAGAAAACAAGCAACCAATAAAAGCCAGACACTAGAGCCTCTGCCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS-3UTR CAA 90 bp | GCTGTTAATAGAGTGACAGCCTTTATCTGGTGTATATCTGGCTGGCAGAGAAAACCTTTCAAGAAGTCTTaGACAAACTGGGTATTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: AVNRVTAFIWCISGWQRKPFKKS*TNWVFS Trigger: AGAAAATACCCAGTTTGTCAAAGACTTCTTGAAAGG...TTTTCTCTGCCAGCCAGATATACACCAGATAAAGGCTGTCACTCTATTAACAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004172.15 |
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| CDS GCA 72 bp | TCCTCAGCACAGCCACGGTTGTCTGGAAGGGGCAGTTaGTGCCTCCTAGTGTACCTTTGTCTGGCTGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: SSAQPRLSGRGS*CLLVYLCLAEQ Trigger: CTGCTCAGCCAGACAAAGGTACACTAGGAGGCAGCAACTGCCCCTTCCAGACAACCGTGGCTGTGCTGAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 |
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| CDS CCA 72 bp | TGCAGGCTAGGCTTCCTCAGCACAGCCACGGTTGTCTaGAAGGGGCAGTTGCTGCCTCCTAGTGTACCTTTG | + |
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Preference number: 6 (lower is better) Translates to: CRLGFLSTATVV*KGQLLPPSVPL Trigger: CAAAGGTACACTAGGAGGCAGCAACTGCCCCTTCCAGACAACCGTGGCTGTGCTGAGGAAGCCTAGCCTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 |
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| CDS CCA 72 bp | GTCCCTTCCCCAGTGCTGGGAAGTTTTAGTGCCCTCTaGGCAACCTTCTTCAGTACCTGGCCTCCTGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: VPSPVLGSFSAL*ATFFSTWPPER Trigger: CCTTTCAGGAGGCCAGGTACTGAAGAAGGTTGCCCAGAGGGCACTAAAACTTCCCAGCACTGGGGAAGGGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 |
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| CDS TCA 72 bp | TGCCCTCTGGGCAACCTTCTTCAGTACCTGGCCTCCTaGAAGGTCCCCCATGTAACGAGTATAAGCATGGGC | + |
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Preference number: 6 (lower is better) Translates to: CPLGNLLQYLAS*KVPHVTSISMG Trigger: GCCCATGCTTATACTCGTTACATGGGGGACCTTTCAGGAGGCCAGGTACTGAAGAAGGTTGCCCAGAGGGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 |
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| CDS CAA 72 bp | GGGAAATATAAGGGGGCGAAGGCTGGGTGGTCCTTGTaGCGGTCCATTTCCTCCTCAAGGGCTGAGTATGTG | + |
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Preference number: 6 (lower is better) Translates to: GKYKGAKAGWSL*RSISSSRAEYV Trigger: CACATACTCAGCCCTTGAGGAGGAAATGGACCGCAACAAGGACCACCCAGCCTTCGCCCCCTTATATTTCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 |
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| CDS CAA 72 bp | GTGGGGAAATATAAGGGGGCGAAGGCTGGGTGGTCCTaGTTGCGGTCCATTTCCTCCTCAAGGGCTGAGTAT | + |
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Preference number: 6 (lower is better) Translates to: VGKYKGAKAGWS*LRSISSSRAEY Trigger: ATACTCAGCCCTTGAGGAGGAAATGGACCGCAACAAGGACCACCCAGCCTTCGCCCCCTTATATTTCCCCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 |
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| CDS GCA 72 bp | CATGCTCAAACAGGTAGAATTGGGTCCCTTCCCCAGTaGTGGGAAGTTTTAGTGCCCTCTGGGCAACCTTCT | + |
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Preference number: 6 (lower is better) Translates to: HAQTGRIGSLPQ*WEVLVPSGQPS Trigger: AGAAGGTTGCCCAGAGGGCACTAAAACTTCCCAGCACTGGGGAAGGGACCCAATTCTACCTGTTTGAGCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 |
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| CDS CCA 72 bp | GCTCAAACAGGTAGAATTGGGTCCCTTCCCCAGTGCTaGGAAGTTTTAGTGCCCTCTGGGCAACCTTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: AQTGRIGSLPQC*EVLVPSGQPSS Trigger: TGAAGAAGGTTGCCCAGAGGGCACTAAAACTTCCCAGCACTGGGGAAGGGACCCAATTCTACCTGTTTGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 |
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| CDS CCA 72 bp | CAAACTGGGTATTTTCTGCTCGGTCATGTGCTTCCTTaGTCCCTTCCTTCAGGAGCTCAGAAAGGTCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: QTGYFLLGHVLP*SLPSGAQKGLP Trigger: TGGCAGACCTTTCTGAGCTCCTGAAGGAAGGGACCAAGGAAGCACATGACCGAGCAGAAAATACCCAGTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 ENSMUST00000140367.8 |
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| CDS CAA 90 bp | ATTCAGGTCCAAGGCATTCATTCTAGCGCGGTAGAACTGCTTGAATaGCTGGGCATTGTCCACATGCTCAAACAGGTAGAATTGGGTCCC | + |
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Preference number: 6 (lower is better) Translates to: IQVQGIHSSAVELLE*LGIVHMLKQVELGP Trigger: GGGACCCAATTCTACCTGTTTGAGCATGTGGACAATGCCCAGCAATTCAAGCAGTTCTACCGCGCTAGAATGAATGCCTTGGACCTGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 |
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| CDS CAA 90 bp | GCTTCCTTGGTCCCTTCCTTCAGGAGCTCAGAAAGGTCTGCCATTTaGGTATGGTTTTCCTTTTCTGGTGCCATAGAGTTCTTCTCTGAC | + |
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Preference number: 6 (lower is better) Translates to: ASLVPSFRSSERSAI*VWFSFSGAIEFFSD Trigger: GTCAGAGAAGAACTCTATGGCACCAGAAAAGGAAAACCATACCAAAATGGCAGACCTTTCTGAGCTCCTGAAGGAAGGGACCAAGGAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 ENSMUST00000140367.8 |
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| CDS CAA 90 bp | TTCACCTGCTCCTCCCAGTTTTCACCAAAGAAATACTTCATGTCCTaGATCAGTGCTGCCTTCCGGTGTAGCTCCGTGGGGAAATATAAG | + |
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Preference number: 6 (lower is better) Translates to: FTCSSQFSPKKYFMS*ISAAFRCSSVGKYK Trigger: CTTATATTTCCCCACGGAGCTACACCGGAAGGCAGCACTGATCAAGGACATGAAGTATTTCTTTGGTGAAAACTGGGAGGAGCAGGTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 ENSMUST00000154117.2 |
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| CDS CAA 90 bp | AAGTCTTTGACAAACTGGGTATTTTCTGCTCGGTCATGTGCTTCCTaGGTCCCTTCCTTCAGGAGCTCAGAAAGGTCTGCCATTTTGGTA | + |
|
Preference number: 6 (lower is better) Translates to: KSLTNWVFSARSCAS*VPSFRSSERSAILV Trigger: TACCAAAATGGCAGACCTTTCTGAGCTCCTGAAGGAAGGGACCAAGGAAGCACATGACCGAGCAGAAAATACCCAGTTTGTCAAAGACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 ENSMUST00000140367.8 |
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| CDS CAA 72 bp | CAAGGCATTCATTCTAGCGCGGTAGAACTGCTTGAATaGCTGGGCATTGTCCACATGCTCAAACAGGTAGAA | + |
|
Preference number: 6 (lower is better) Translates to: QGIHSSAVELLE*LGIVHMLKQVE Trigger: TTCTACCTGTTTGAGCATGTGGACAATGCCCAGCAATTCAAGCAGTTCTACCGCGCTAGAATGAATGCCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 |
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| CDS GCA 72 bp | TCCTTTCAAGAAGTCTTTGACAAACTGGGTATTTTCTaGTCGGTCATGTGCTTCCTTGGTCCCTTCCTTCAG | + |
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Preference number: 6 (lower is better) Translates to: SFQEVFDKLGIF*SVMCFLGPFLQ Trigger: CTGAAGGAAGGGACCAAGGAAGCACATGACCGAGCAGAAAATACCCAGTTTGTCAAAGACTTCTTGAAAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000004172.15 ENSMUST00000118885.8 ENSMUST00000120232.8 ENSMUST00000121529.2 ENSMUST00000140367.8 |
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