Pregenerated sensors for HMGN5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031245Ensembl transcript IDs: ENSMUST00000033597.9
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCGCCAAACTCTTTCTTTaGGAATTCTCCTACTCTGCA | + |
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Preference number: 3 (lower is better) Translates to: KLLIQLYLVMSIPTLSITAKLFL*EFSYSA Trigger: TGCAGAGTAGGAGAATTCCAAAAGAAAGAGTTTGGC...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| 3UTR-3UTR CAA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCGTCATGTTAGGCATTTaGCAACTAATAACCTGTATG | + |
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Preference number: 3 (lower is better) Translates to: KLLIQLYLVMSIPTLSITVMLGI*QLITCM Trigger: CATACAGGTTATTAGTTGCAAAATGCCTAACATGAC...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR TCA 90 bp | AGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTACTCTGCAAATTTACCACGTCCATCTTCCTCAGGCTaGCCTTCCTTTCCAACTTCC | + |
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Preference number: 4 (lower is better) Translates to: SCAKLFLLEFSYSANLPRPSSSG*PSFPTS Trigger: GGAAGTTGGAAAGGAAGGTCAGCCTGAGGAAGATGG...ACGTGGTAAATTTGCAGAGTAGGAGAATTCCAAAAGAAAGAGTTTGGCACAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CCA 90 bp | AACCTAGAGAACTACATCAAAGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTCTTCTCTTTGGCTCCTaGCTCACATCACCTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: NLENYIKVVPNSFFWNSPLLFGS*LTSPAA Trigger: GGCTGCAGGTGATGTGAGCCAGGAGCCAAAGAGAAG...AGGAGAATTCCAAAAGAAAGAGTTTGGCACAACTTTGATGTAGTTCTCTAGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR TCA 90 bp | ACATCAAAGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTACTCTGCAAATTTAGCAGACAGTCGGGCTaGTCTTCTCTTTGGCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: TSKLCQTLSFGILLLCKFSRQSG*SSLWLL Trigger: CAGGAGCCAAAGAGAAGATCAGCCCGACTGTCTGCT...AAATTTGCAGAGTAGGAGAATTCCAAAAGAAAGAGTTTGGCACAACTTTGATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR TCA 90 bp | AGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTACTCTGCAAATTTACCACGTCCATCTTCCTTACACTaGCCTTCCTTTCCATCTTCC | + |
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Preference number: 4 (lower is better) Translates to: SCAKLFLLEFSYSANLPRPSSLH*PSFPSS Trigger: GGAAGATGGAAAGGAAGGTCAGTGTAAGGAAGATGG...ACGTGGTAAATTTGCAGAGTAGGAGAATTCCAAAAGAAAGAGTTTGGCACAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR TCA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCCCATCTTCTTCAGGCTaGCCTTCCTTTCCATCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: KLLIQLYLVMSIPTLSITPSSSG*PSFPSS Trigger: GGAAGATGGAAAGGAAGGTCAGCCTGAAGAAGATGG...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR TCA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCCCATCTTCCTCAGGCTaGTCTTCCTTTCCATCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: KLLIQLYLVMSIPTLSITPSSSG*SSFPSS Trigger: GGAAGATGGAAAGGAAGATCAGCCTGAGGAAGATGG...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR TCA 90 bp | AACCTAGAGAACTACATCAAAGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTTCTCTCCGTCTTGTTTaGAGTCTTTGTTTTCGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: NLENYIKVVPNSFFWNSPSLRLV*SLCFRL Trigger: GAGCCGAAAACAAAGACTTCAAACAAGACGGAGAGA...AGGAGAATTCCAAAAGAAAGAGTTTGGCACAACTTTGATGTAGTTCTCTAGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR GCA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCGGCTCCTTCTTCTTCTaGCTCCACCTTGTTTTCATC | + |
|
Preference number: 4 (lower is better) Translates to: KLLIQLYLVMSIPTLSITGSFFF*LHLVFI Trigger: GATGAAAACAAGGTGGAGGCAGAAGAAGAAGGAGCC...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR GCA 90 bp | AACCTAGAGAACTACATCAAAGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTATCTTTGGACACCTCTaGATCTTCACTTTTGGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: NLENYIKVVPNSFFWNSPIFGHL*IFTFGC Trigger: ACAGCCAAAAGTGAAGATGCAGAGGTGTCCAAAGAT...AGGAGAATTCCAAAAGAAAGAGTTTGGCACAACTTTGATGTAGTTCTCTAGGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR GCA 90 bp | AGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTACTCTGCAAATTTACCACGTTTTCCATCTTCCTCATaGAGATCTTCCTTTCCAACT | + |
|
Preference number: 4 (lower is better) Translates to: SCAKLFLLEFSYSANLPRFPSSS*RSSFPT Trigger: AGTTGGAAAGGAAGATCTGCATGAGGAAGATGGAAA...ACGTGGTAAATTTGCAGAGTAGGAGAATTCCAAAAGAAAGAGTTTGGCACAACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR GCA 90 bp | AACCTAGAGAACTACATCAAAGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTTCTACAGCAACCTCTTaGTCTCCTTCTTCCTTTCTA | + |
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Preference number: 4 (lower is better) Translates to: NLENYIKVVPNSFFWNSPSTATS*SPSSFL Trigger: TAGAAAGGAAGAAGGAGAGCAAGAGGTTGCTGTAGA...AGGAGAATTCCAAAAGAAAGAGTTTGGCACAACTTTGATGTAGTTCTCTAGGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CCA 90 bp | AGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTACTCTGCAAATTTACCACGTGTCTTTAACATCTTCTaGCTTGGTTTCAGGAATTGG | + |
|
Preference number: 4 (lower is better) Translates to: SCAKLFLLEFSYSANLPRVFNIF*LGFRNW Trigger: CCAATTCCTGAAACCAAGCCAGAAGATGTTAAAGAC...ACGTGGTAAATTTGCAGAGTAGGAGAATTCCAAAAGAAAGAGTTTGGCACAACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR GCA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCATCATCTTTGGCTTCTaGTGCCACTGCTTCTTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: KLLIQLYLVMSIPTLSITIIFGF*CHCFFL Trigger: AAGAAAGAAGCAGTGGCAGCAGAAGCCAAAGATGAT...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR GCA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCTGTTTTCCTCCTCTTTaGATTTCCCATCATCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: KLLIQLYLVMSIPTLSITCFPPL*ISHHPP Trigger: AGGAGGATGATGGGAAATGCAAAGAGGAGGAAAACA...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR GCA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCTTTCCATCTTCCTCATaGAGATCTTCCTTTCCACCT | + |
|
Preference number: 4 (lower is better) Translates to: KLLIQLYLVMSIPTLSITFPSSS*RSSFPP Trigger: AGGTGGAAAGGAAGATCTGCATGAGGAAGATGGAAA...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CCA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCCTTCCACGACATTTGTaGTCTTGGTTTTCCTTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: KLLIQLYLVMSIPTLSITLPRHL*SWFSLK Trigger: CTTCAAGGAAAACCAAGACCACAAATGTCGTGGAAG...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR TCA 90 bp | AACCTAGAGAACTACATCAAAGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTTCTTTCTCCACATCTTaGATGTTTGCTTTTAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: NLENYIKVVPNSFFWNSPSFSTS*MFAFSS Trigger: TGAGCTAAAAGCAAACATTCAAGATGTGGAGAAAGA...AGGAGAATTCCAAAAGAAAGAGTTTGGCACAACTTTGATGTAGTTCTCTAGGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR GCA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCTTTCCAACTTCCTCATaGAGATCTTCCTTTCCATCT | + |
|
Preference number: 4 (lower is better) Translates to: KLLIQLYLVMSIPTLSITFPTSS*RSSFPS Trigger: AGATGGAAAGGAAGATCTGCATGAGGAAGTTGGAAA...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CCA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCCGACATTTGTGGTCTTaGTTTTCCTTGAAGTTGATG | + |
|
Preference number: 4 (lower is better) Translates to: KLLIQLYLVMSIPTLSITRHLWS*FSLKLM Trigger: CATCAACTTCAAGGAAAACCAAGACCACAAATGTCG...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CCA 90 bp | AACCTAGAGAACTACATCAAAGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTCTTGGTTTCAGGAATTaGTATGGTACTTGCATCTTT | + |
|
Preference number: 4 (lower is better) Translates to: NLENYIKVVPNSFFWNSPLGFRN*YGTCIF Trigger: AAAGATGCAAGTACCATACCAATTCCTGAAACCAAG...AGGAGAATTCCAAAAGAAAGAGTTTGGCACAACTTTGATGTAGTTCTCTAGGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR GCA 90 bp | AACCTAGAGAACTACATCAAAGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTAATTGGTATGGTACTTaGATCTTTGTTTTCTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: NLENYIKVVPNSFFWNSPNWYGT*IFVFFH Trigger: GTGGAAGAAAACAAAGATGCAAGTACCATACCAATT...AGGAGAATTCCAAAAGAAAGAGTTTGGCACAACTTTGATGTAGTTCTCTAGGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| 3UTR CAA 72 bp | AGAGAACTACATCAAAGTTGTGCCAAACTCTTTCTTTaGGAATTCTCCTACTCTGCAAATTTACCACGTATA | + |
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Preference number: 4 (lower is better) Translates to: RELHQSCAKLFL*EFSYSANLPRI Trigger: TATACGTGGTAAATTTGCAGAGTAGGAGAATTCCAAAAGAAAGAGTTTGGCACAACTTTGATGTAGTTCTCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS TCA 90 bp | TTTCAACTCCGGTGTAAAGGGCACAGGCATAGCAGACAGTCGGGCTaGTCTTCTCTTTGGCTCCTGGCTCACATCACCTGCAGCCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: FQLRCKGHRHSRQSG*SSLWLLAHITCSLS Trigger: AGAAAGGCTGCAGGTGATGTGAGCCAGGAGCCAAAGAGAAGATCAGCCCGACTGTCTGCTATGCCTGTGCCCTTTACACCGGAGTTGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS GCA 90 bp | CTCTCCGTCTTGTTTGAAGTCTTTGTTTTCGGCTCCTTCTTCTTCTaGCTCCACCTTGTTTTCATCACTCCCTTCATCTACAGCAACCTC | + |
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Preference number: 5 (lower is better) Translates to: LSVLFEVFVFGSFFF*LHLVFITPFIYSNL Trigger: GAGGTTGCTGTAGATGAAGGGAGTGATGAAAACAAGGTGGAGGCAGAAGAAGAAGGAGCCGAAAACAAAGACTTCAAACAAGACGGAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CAA 90 bp | AACCTAGAGAACTACATCAAAGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTGGGCTGATCTTCTCTTaGGCTCCTGGCTCACATCAC | + |
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Preference number: 5 (lower is better) Translates to: NLENYIKVVPNSFFWNSPGLIFS*APGSHH Trigger: GTGATGTGAGCCAGGAGCCAAAGAGAAGATCAGCCC...AGGAGAATTCCAAAAGAAAGAGTTTGGCACAACTTTGATGTAGTTCTCTAGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CAA 90 bp | AGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTACTCTGCAAATTTACCACGTCCAGTGTCCCCCTCTTaGTCATCTTTCTCTTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: SCAKLFLLEFSYSANLPRPVSPS*SSFSSS Trigger: GGAAGAAGAGAAAGATGACAAAGAGGGGGACACTGG...ACGTGGTAAATTTGCAGAGTAGGAGAATTCCAAAAGAAAGAGTTTGGCACAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CAA 90 bp | AGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTACTCTGCAAATTTACCACGTAGGCTGACCTTCCTTTaGATCTTCCTTAGGCTGACC | + |
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Preference number: 5 (lower is better) Translates to: SCAKLFLLEFSYSANLPRRLTFL*IFLRLT Trigger: GGTCAGCCTAAGGAAGATCAAAAGGAAGGTCAGCCT...ACGTGGTAAATTTGCAGAGTAGGAGAATTCCAAAAGAAAGAGTTTGGCACAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS CCA 90 bp | CTCCTTTCTCTTCTTCATCTTTGGACACCTCTGCATCTTCACTTTTaGCTGTACCTGGTTTCTCGTTTAGGCCTTCTTCTTCTATTTTTC | + |
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Preference number: 5 (lower is better) Translates to: LLSLLHLWTPLHLHF*LYLVSRLGLLLLFF Trigger: GAAAAATAGAAGAAGAAGGCCTAAACGAGAAACCAGGTACAGCCAAAAGTGAAGATGCAGAGGTGTCCAAAGATGAAGAAGAGAAAGGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CAA 90 bp | AGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTACTCTGCAAATTTACCACGTTCTGCATCTTCACTTTaGGCTGTACCTGGTTTCTCG | + |
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Preference number: 5 (lower is better) Translates to: SCAKLFLLEFSYSANLPRSASSL*AVPGFS Trigger: CGAGAAACCAGGTACAGCCAAAAGTGAAGATGCAGA...ACGTGGTAAATTTGCAGAGTAGGAGAATTCCAAAAGAAAGAGTTTGGCACAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CAA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCTTTAGCTCATCATCTTaGGCTTCTGCTGCCACTGCT | + |
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Preference number: 5 (lower is better) Translates to: KLLIQLYLVMSIPTLSITFSSSS*ASAATA Trigger: AGCAGTGGCAGCAGAAGCCAAAGATGATGAGCTAAA...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CAA 90 bp | AGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTACTCTGCAAATTTACCACGTTCCTCACCTGTATCTTaGTGCTCTTTTCCATCTTCA | + |
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Preference number: 5 (lower is better) Translates to: SCAKLFLLEFSYSANLPRSSPVS*CSFPSS Trigger: TGAAGATGGAAAAGAGCACAAAGATACAGGTGAGGA...ACGTGGTAAATTTGCAGAGTAGGAGAATTCCAAAAGAAAGAGTTTGGCACAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CAA 90 bp | AGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTACTCTGCAAATTTACCACGTTTCTCTCCGTCTTGTTaGAAGTCTTTGTTTTCGGCT | + |
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Preference number: 5 (lower is better) Translates to: SCAKLFLLEFSYSANLPRFSPSC*KSLFSA Trigger: AGCCGAAAACAAAGACTTCAAACAAGACGGAGAGAA...ACGTGGTAAATTTGCAGAGTAGGAGAATTCCAAAAGAAAGAGTTTGGCACAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CAA 90 bp | AGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTACTCTGCAAATTTACCACGTACGACATTTGTGGTCTaGGTTTTCCTTGAAGTTGAT | + |
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Preference number: 5 (lower is better) Translates to: SCAKLFLLEFSYSANLPRTTFVV*VFLEVD Trigger: ATCAACTTCAAGGAAAACCAAGACCACAAATGTCGT...ACGTGGTAAATTTGCAGAGTAGGAGAATTCCAAAAGAAAGAGTTTGGCACAACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CAA 90 bp | AACCTAGAGAACTACATCAAAGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTTCCTCCTCGGCTTCCTaGTTTTGTTCTTTTACTTCT | + |
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Preference number: 5 (lower is better) Translates to: NLENYIKVVPNSFFWNSPSSSAS*FCSFTS Trigger: AGAAGTAAAAGAACAAAACAAGGAAGCCGAGGAGGA...AGGAGAATTCCAAAAGAAAGAGTTTGGCACAACTTTGATGTAGTTCTCTAGGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CAA 90 bp | AGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTACTCTGCAAATTTACCACGTCTCTTTCTCTCCGTCTaGTTTGAAGTCTTTGTTTTC | + |
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Preference number: 5 (lower is better) Translates to: SCAKLFLLEFSYSANLPRLFLSV*FEVFVF Trigger: GAAAACAAAGACTTCAAACAAGACGGAGAGAAAGAG...ACGTGGTAAATTTGCAGAGTAGGAGAATTCCAAAAGAAAGAGTTTGGCACAACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CAA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCTCCTTTCCAACTTCCTaGTTTTCCTCCTCTTTGCAT | + |
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Preference number: 5 (lower is better) Translates to: KLLIQLYLVMSIPTLSITSFPTS*FSSSLH Trigger: ATGCAAAGAGGAGGAAAACAAGGAAGTTGGAAAGGA...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CAA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCTTAACATCTTCTGGCTaGGTTTCAGGAATTGGTATG | + |
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Preference number: 5 (lower is better) Translates to: KLLIQLYLVMSIPTLSITLTSSG*VSGIGM Trigger: CATACCAATTCCTGAAACCAAGCCAGAAGATGTTAA...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CAA 90 bp | AACCTAGAGAACTACATCAAAGTTGTGCCAAACTCTTTCTTTTGGAATTCTCCTCCACATCTTGAATGTTaGCTTTTAGCTCATCATCTT | + |
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Preference number: 5 (lower is better) Translates to: NLENYIKVVPNSFFWNSPPHLEC*LLAHHL Trigger: AAGATGATGAGCTAAAAGCAAACATTCAAGATGTGG...AGGAGAATTCCAAAAGAAAGAGTTTGGCACAACTTTGATGTAGTTCTCTAGGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS-3UTR CAA 90 bp | AAGCTACTAATACAGTTGTATTTGGTAATGTCAATTCCGACTCTTAGCATTACCATGGTACTTGCATCTTaGTTTTCTTCCACGACATTT | + |
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Preference number: 5 (lower is better) Translates to: KLLIQLYLVMSIPTLSITMVLAS*FSSTTF Trigger: AAATGTCGTGGAAGAAAACAAAGATGCAAGTACCAT...GGTAATGCTAAGAGTCGGAATTGACATTACCAAATACAACTGTATTAGTAGCTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS CAA 72 bp | AGAGGCTCCTCTTTCTCTCCGTCTTGTTTGAAGTCTTaGTTTTCGGCTCCTTCTTCTTCTGCCTCCACCTTG | + |
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Preference number: 6 (lower is better) Translates to: RGSSFSPSCLKS*FSAPSSSASTL Trigger: CAAGGTGGAGGCAGAAGAAGAAGGAGCCGAAAACAAAGACTTCAAACAAGACGGAGAGAAAGAGGAGCCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS CAA 90 bp | TGTTTGAAGTCTTTGTTTTCGGCTCCTTCTTCTTCTGCCTCCACCTaGTTTTCATCACTCCCTTCATCTACAGCAACCTCTTGCTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: CLKSLFSAPSSSAST*FSSLPSSTATSCSP Trigger: AGGAGAGCAAGAGGTTGCTGTAGATGAAGGGAGTGATGAAAACAAGGTGGAGGCAGAAGAAGAAGGAGCCGAAAACAAAGACTTCAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS TCA 72 bp | CAATACTCAGAGGCTCCTCTTTCTCTCCGTCTTGTTTaGAGTCTTTGTTTTCGGCTCCTTCTTCTTCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: QYSEAPLSLRLV*SLCFRLLLLLP Trigger: AGGCAGAAGAAGAAGGAGCCGAAAACAAAGACTTCAAACAAGACGGAGAGAAAGAGGAGCCTCTGAGTATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS CAA 72 bp | ACAATACTCAGAGGCTCCTCTTTCTCTCCGTCTTGTTaGAAGTCTTTGTTTTCGGCTCCTTCTTCTTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: TILRGSSFSPSC*KSLFSAPSSSA Trigger: GGCAGAAGAAGAAGGAGCCGAAAACAAAGACTTCAAACAAGACGGAGAGAAAGAGGAGCCTCTGAGTATTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS CAA 90 bp | ACAATACTCAGAGGCTCCTCTTTCTCTCCGTCTTGTTTGAAGTCTTaGTTTTCGGCTCCTTCTTCTTCTGCCTCCACCTTGTTTTCATCA | + |
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Preference number: 6 (lower is better) Translates to: TILRGSSFSPSCLKS*FSAPSSSASTLFSS Trigger: TGATGAAAACAAGGTGGAGGCAGAAGAAGAAGGAGCCGAAAACAAAGACTTCAAACAAGACGGAGAGAAAGAGGAGCCTCTGAGTATTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS CCA 72 bp | CTTCTTCATCTTTGGACACCTCTGCATCTTCACTTTTaGCTGTACCTGGTTTCTCGTTTAGGCCTTCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: LLHLWTPLHLHF*LYLVSRLGLLL Trigger: AAGAAGAAGGCCTAAACGAGAAACCAGGTACAGCCAAAAGTGAAGATGCAGAGGTGTCCAAAGATGAAGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS GCA 72 bp | ATTGTCTCCTTTCTCTTCTTCATCTTTGGACACCTCTaGATCTTCACTTTTGGCTGTACCTGGTTTCTCGTT | + |
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Preference number: 6 (lower is better) Translates to: IVSFLFFIFGHL*IFTFGCTWFLV Trigger: AACGAGAAACCAGGTACAGCCAAAAGTGAAGATGCAGAGGTGTCCAAAGATGAAGAAGAGAAAGGAGACAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS CAA 72 bp | TTAGACAATACTCAGAGGCTCCTCTTTCTCTCCGTCTaGTTTGAAGTCTTTGTTTTCGGCTCCTTCTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: LDNTQRLLFLSV*FEVFVFGSFFF Trigger: GAAGAAGAAGGAGCCGAAAACAAAGACTTCAAACAAGACGGAGAGAAAGAGGAGCCTCTGAGTATTGTCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS CAA 90 bp | GGTGCCTCCATAATCTTGGCTTCTCCATTTTCAGCATTTTCCATGTaGCATTCGTCTTTAACATCTTCTGGCTTGGTTTCAGGAATTGGT | + |
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Preference number: 6 (lower is better) Translates to: GASIILASPFSAFSM*HSSLTSSGLVSGIG Trigger: ACCAATTCCTGAAACCAAGCCAGAAGATGTTAAAGACGAATGCAACATGGAAAATGCTGAAAATGGAGAAGCCAAGATTATGGAGGCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS CAA 90 bp | TCTCCTTTCTCTTCTTCATCTTTGGACACCTCTGCATCTTCACTTTaGGCTGTACCTGGTTTCTCGTTTAGGCCTTCTTCTTCTATTTTT | + |
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Preference number: 6 (lower is better) Translates to: SPFSSSSLDTSASSL*AVPGFSFRPSSSIF Trigger: AAAAATAGAAGAAGAAGGCCTAAACGAGAAACCAGGTACAGCCAAAAGTGAAGATGCAGAGGTGTCCAAAGATGAAGAAGAGAAAGGAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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| CDS CAA 72 bp | ATAATCTTGGCTTCTCCATTTTCAGCATTTTCCATGTaGCATTCGTCTTTAACATCTTCTGGCTTGGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: IILASPFSAFSM*HSSLTSSGLVS Trigger: TGAAACCAAGCCAGAAGATGTTAAAGACGAATGCAACATGGAAAATGCTGAAAATGGAGAAGCCAAGATTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033597.9 |
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