Pregenerated sensors for HMGN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066456Ensembl transcript IDs: ENSMUST00000161796.9, ENSMUST00000162246.9, ENSMUST00000185315.7, ENSMUST00000187193.7, ENSMUST00000190154.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCTTGGCTTTGCTTCCAGCTCTACTTGAAAACACACTCCAACTCTaGCTGGACAGACAAGGCAGGAAGGCCTTATGCAACACTCTGCAG | + |
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Preference number: 1 (lower is better) Translates to: PLALLPALLENTLQL*LDRQGRKALCNTLQ Trigger: CTGCAGAGTGTTGCATAAGGCCTTCCTGCCTTGTCTGTCCAGCCAGAGTTGGAGTGTGTTTTCAAGTAGAGCTGGAAGCAAAGCCAAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR CCA 90 bp | AGGCAAGTCCACCCACCAAGAACACACTTGAGCATTTGGCCCCCTTaGCTTTGCTTCCAGCTCTACTTGAAAACACACTCCAACTCTGGC | + |
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Preference number: 1 (lower is better) Translates to: RQVHPPRTHLSIWPP*LCFQLYLKTHSNSG Trigger: GCCAGAGTTGGAGTGTGTTTTCAAGTAGAGCTGGAAGCAAAGCCAAGGGGGCCAAATGCTCAAGTGTGTTCTTGGTGGGTGGACTTGCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR GCA 90 bp | GCATGCAGAATGTCTACTGTACCCTTAACTCTCACTGTTTCAATCTaGCCCTTTACTGACAGTGTGCTGGGTGGGGGACTTCTGCAGGCT | + |
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Preference number: 1 (lower is better) Translates to: ACRMSTVPLTLTVSI*PFTDSVLGGGLLQA Trigger: AGCCTGCAGAAGTCCCCCACCCAGCACACTGTCAGTAAAGGGGCAGATTGAAACAGTGAGAGTTAAGGGTACAGTAGACATTCTGCATGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR GCA 90 bp | CTGCTATTTAAACAACCACAGAAGCCTTACCTGCGCGCTCCCGTGTaGATGATAAGAAACAGCACGCTACTCTCTGATTCTAGTCACTGC | + |
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Preference number: 1 (lower is better) Translates to: LLFKQPQKPYLRAPV*MIRNSTLLSDSSHC Trigger: GCAGTGACTAGAATCAGAGAGTAGCGTGCTGTTTCTTATCATGCACACGGGAGCGCGCAGGTAAGGCTTCTGTGGTTGTTTAAATAGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR CCA 90 bp | GGGGGACTTCTGCAGGCTGAGACATTAACAGTTGAACGAGAGACGTaGATCTGCAGTAACATTACAGGCGATAAAGAGAGACATTGTGAG | + |
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Preference number: 1 (lower is better) Translates to: GGLLQAETLTVERET*ICSNITGDKERHCE Trigger: CTCACAATGTCTCTCTTTATCGCCTGTAATGTTACTGCAGATCCACGTCTCTCGTTCAACTGTTAATGTCTCAGCCTGCAGAAGTCCCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR GCA 90 bp | CTTCTGCAGGCTGAGACATTAACAGTTGAACGAGAGACGTGGATCTaGAGTAACATTACAGGCGATAAAGAGAGACATTGTGAGCGTGCT | + |
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Preference number: 1 (lower is better) Translates to: LLQAETLTVERETWI*SNITGDKERHCERA Trigger: AGCACGCTCACAATGTCTCTCTTTATCGCCTGTAATGTTACTGCAGATCCACGTCTCTCGTTCAACTGTTAATGTCTCAGCCTGCAGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000185315.7 ENSMUST00000190154.2 |
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| 3UTR CCA 90 bp | TCTGTGCTTCTGCAGGCTGAGACATTAACAGTTGAACGAGAGACGTaGATCTGCAGTAACATTACAGGCGATAAAGAGAGACATTGTGAG | + |
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Preference number: 1 (lower is better) Translates to: SVLLQAETLTVERET*ICSNITGDKERHCE Trigger: CTCACAATGTCTCTCTTTATCGCCTGTAATGTTACTGCAGATCCACGTCTCTCGTTCAACTGTTAATGTCTCAGCCTGCAGAAGCACAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190154.2 |
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| 3UTR CAA 90 bp | AAGGCAAGTCCACCCACCAAGAACACACTTGAGCATTTGGCCCCCTaGGCTTTGCTTCCAGCTCTACTTGAAAACACACTCCAACTCTGG | + |
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Preference number: 2 (lower is better) Translates to: KASPPTKNTLEHLAP*ALLPALLENTLQLW Trigger: CCAGAGTTGGAGTGTGTTTTCAAGTAGAGCTGGAAGCAAAGCCAAGGGGGCCAAATGCTCAAGTGTGTTCTTGGTGGGTGGACTTGCCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR CAA 90 bp | GTAGAAGCAAAGGCAAGTCCACCCACCAAGAACACACTTGAGCATTaGGCCCCCTTGGCTTTGCTTCCAGCTCTACTTGAAAACACACTC | + |
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Preference number: 2 (lower is better) Translates to: VEAKASPPTKNTLEH*APLALLPALLENTL Trigger: GAGTGTGTTTTCAAGTAGAGCTGGAAGCAAAGCCAAGGGGGCCAAATGCTCAAGTGTGTTCTTGGTGGGTGGACTTGCCTTTGCTTCTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR-3UTR TCA 90 bp | TTGAGCATTTGGCCCCCTTGGCTTTGCTTCCAGCTCTACTTGAAAACACACTCCCACGCAGCTCCGATGTaGAATTGGTATTTGCGTGAC | + |
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Preference number: 2 (lower is better) Translates to: LSIWPPWLCFQLYLKTHSHAAPM*NWYLRD Trigger: GTCACGCAAATACCAATTTCACATCGGAGCTGCGTG...GGAGTGTGTTTTCAAGTAGAGCTGGAAGCAAAGCCAAGGGGGCCAAATGCTCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR TCA 72 bp | GCATTTGGCCCCCTTGGCTTTGCTTCCAGCTCTACTTaGAAACACACTCCAACTCTGGCTGGACAGACAAGG | + |
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Preference number: 3 (lower is better) Translates to: AFGPLGFASSST*KHTPTLAGQTR Trigger: CCTTGTCTGTCCAGCCAGAGTTGGAGTGTGTTTTCAAGTAGAGCTGGAAGCAAAGCCAAGGGGGCCAAATGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR TCA 72 bp | AGAAGCAAAGGCAAGTCCACCCACCAAGAACACACTTaGGCATTTGGCCCCCTTGGCTTTGCTTCCAGCTCT | + |
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Preference number: 3 (lower is better) Translates to: RSKGKSTHQEHT*AFGPLGFASSS Trigger: AGAGCTGGAAGCAAAGCCAAGGGGGCCAAATGCTCAAGTGTGTTCTTGGTGGGTGGACTTGCCTTTGCTTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR CCA 72 bp | AGGCAAGTCCACCCACCAAGAACACACTTGAGCATTTaGCCCCCTTGGCTTTGCTTCCAGCTCTACTTGAAA | + |
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Preference number: 3 (lower is better) Translates to: RQVHPPRTHLSI*PPWLCFQLYLK Trigger: TTTCAAGTAGAGCTGGAAGCAAAGCCAAGGGGGCCAAATGCTCAAGTGTGTTCTTGGTGGGTGGACTTGCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR GCA 72 bp | AAACAACCACAGAAGCCTTACCTGCGCGCTCCCGTGTaGATGATAAGAAACAGCACGCTACTCTCTGATTCT | + |
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Preference number: 3 (lower is better) Translates to: KQPQKPYLRAPV*MIRNSTLLSDS Trigger: AGAATCAGAGAGTAGCGTGCTGTTTCTTATCATGCACACGGGAGCGCGCAGGTAAGGCTTCTGTGGTTGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR CCA 72 bp | TTGCTTCCAGCTCTACTTGAAAACACACTCCAACTCTaGCTGGACAGACAAGGCAGGAAGGCCTTATGCAAC | + |
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Preference number: 3 (lower is better) Translates to: LLPALLENTLQL*LDRQGRKALCN Trigger: GTTGCATAAGGCCTTCCTGCCTTGTCTGTCCAGCCAGAGTTGGAGTGTGTTTTCAAGTAGAGCTGGAAGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR-3UTR CAA 90 bp | TTGAGCATTTGGCCCCCTTGGCTTTGCTTCCAGCTCTACTTGAAAACACACTCCTCCAGAGCTGAAGGGTaGAGCAGTTTCTTAAGACAC | + |
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Preference number: 3 (lower is better) Translates to: LSIWPPWLCFQLYLKTHSSRAEG*SSFLRH Trigger: GTGTCTTAAGAAACTGCTCAACCCTTCAGCTCTGGA...GGAGTGTGTTTTCAAGTAGAGCTGGAAGCAAAGCCAAGGGGGCCAAATGCTCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR GCA 72 bp | CCAAGAACACACTTGAGCATTTGGCCCCCTTGGCTTTaGTTCCAGCTCTACTTGAAAACACACTCCAACTCT | + |
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Preference number: 3 (lower is better) Translates to: PRTHLSIWPPWL*FQLYLKTHSNS Trigger: AGAGTTGGAGTGTGTTTTCAAGTAGAGCTGGAAGCAAAGCCAAGGGGGCCAAATGCTCAAGTGTGTTCTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR-3UTR CAA 90 bp | AGACGTGGATCTGCAGTAACATTACAGGCGATAAAGAGAGACATTGTGAGCGTGTCCAGAGCTGAAGGGTaGAGCAGTTTCTTAAGACAC | + |
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Preference number: 3 (lower is better) Translates to: RRGSAVTLQAIKRDIVSVSRAEG*SSFLRH Trigger: GTGTCTTAAGAAACTGCTCAACCCTTCAGCTCTGGA...CACGCTCACAATGTCTCTCTTTATCGCCTGTAATGTTACTGCAGATCCACGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000185315.7 ENSMUST00000190154.2 |
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| 3UTR TCA 72 bp | GATAAAGAGAGACATTGTGAGCGTGCTATCCAGAGCTaGAGGGTTGAGCAGTTTCTTAAGACACTGATTCGG | + |
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Preference number: 3 (lower is better) Translates to: DKERHCERAIQS*RVEQFLKTLIR Trigger: CCGAATCAGTGTCTTAAGAAACTGCTCAACCCTTCAGCTCTGGATAGCACGCTCACAATGTCTCTCTTTATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000185315.7 ENSMUST00000190154.2 |
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| 3UTR CCA 72 bp | CTGCAGGCTGAGACATTAACAGTTGAACGAGAGACGTaGATCTGCAGTAACATTACAGGCGATAAAGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: LQAETLTVERET*ICSNITGDKER Trigger: TCTCTCTTTATCGCCTGTAATGTTACTGCAGATCCACGTCTCTCGTTCAACTGTTAATGTCTCAGCCTGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000185315.7 ENSMUST00000190154.2 |
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| 3UTR GCA 72 bp | GCTGAGACATTAACAGTTGAACGAGAGACGTGGATCTaGAGTAACATTACAGGCGATAAAGAGAGACATTGT | + |
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Preference number: 3 (lower is better) Translates to: AETLTVERETWI*SNITGDKERHC Trigger: ACAATGTCTCTCTTTATCGCCTGTAATGTTACTGCAGATCCACGTCTCTCGTTCAACTGTTAATGTCTCAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000185315.7 ENSMUST00000190154.2 |
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| CDS-3UTR CCA 90 bp | CGTGGATCTGCAGTAACATTACAGGCGATAAAGAGAGACATTGTGAGCGTGCTAGTTTCGCGGACAACCTaGCCGACCGTCTTGTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: RGSAVTLQAIKRDIVSVLVSRTT*PTVLWA Trigger: AGCCCACAAGACGGTCGGCCAGGTTGTCCGCGAAAC...TAGCACGCTCACAATGTCTCTCTTTATCGCCTGTAATGTTACTGCAGATCCACG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000185315.7 ENSMUST00000190154.2 |
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| 3UTR CAA 72 bp | AGCATTTGGCCCCCTTGGCTTTGCTTCCAGCTCTACTaGAAAACACACTCCAACTCTGGCTGGACAGACAAG | + |
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Preference number: 4 (lower is better) Translates to: SIWPPWLCFQLY*KTHSNSGWTDK Trigger: CTTGTCTGTCCAGCCAGAGTTGGAGTGTGTTTTCAAGTAGAGCTGGAAGCAAAGCCAAGGGGGCCAAATGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR CAA 72 bp | AAGGCAAGTCCACCCACCAAGAACACACTTGAGCATTaGGCCCCCTTGGCTTTGCTTCCAGCTCTACTTGAA | + |
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Preference number: 4 (lower is better) Translates to: KASPPTKNTLEH*APLALLPALLE Trigger: TTCAAGTAGAGCTGGAAGCAAAGCCAAGGGGGCCAAATGCTCAAGTGTGTTCTTGGTGGGTGGACTTGCCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| CDS-3UTR CCA 90 bp | GTGAAATCGACCCTAGTTTTCCACGACAATTCACTCTCCCTCCTTTTCTATAGAGTTTCGCGGACAACCTaGCCGACCGTCTTGTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: VKSTLVFHDNSLSLLFYRVSRTT*PTVLWA Trigger: AGCCCACAAGACGGTCGGCCAGGTTGTCCGCGAAAC...TCTATAGAAAAGGAGGGAGAGTGAATTGTCGTGGAAAACTAGGGTCGATTTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000161796.9 ENSMUST00000185315.7 |
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| CDS-3UTR CCA 90 bp | TTAACAGTTGAACGAGAGACGTGGATCTGCAGTAACATTACAGGCGATAAAGAGGTTTCGCGGACAACCTaGCCGACCGTCTTGTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: LTVERETWICSNITGDKEVSRTT*PTVLWA Trigger: AGCCCACAAGACGGTCGGCCAGGTTGTCCGCGAAAC...CTCTTTATCGCCTGTAATGTTACTGCAGATCCACGTCTCTCGTTCAACTGTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000185315.7 ENSMUST00000190154.2 |
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| CDS-3UTR GCA 90 bp | ATTTGGCCCCCTTGGCTTTGCTTCCAGCTCTACTTGAAAACACACTCCAACTCTCGTCTTGTGGGCTCCTaGTTAGTTAGCTTGGTTCCA | + |
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Preference number: 4 (lower is better) Translates to: IWPPWLCFQLYLKTHSNSRLVGS*LVSLVP Trigger: TGGAACCAAGCTAACTAAGCAGGAGCCCACAAGACG...AGAGTTGGAGTGTGTTTTCAAGTAGAGCTGGAAGCAAAGCCAAGGGGGCCAAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| 3UTR CAA 72 bp | ACCAAGAACACACTTGAGCATTTGGCCCCCTTGGCTTaGCTTCCAGCTCTACTTGAAAACACACTCCAACTC | + |
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Preference number: 4 (lower is better) Translates to: TKNTLEHLAPLA*LPALLENTLQL Trigger: GAGTTGGAGTGTGTTTTCAAGTAGAGCTGGAAGCAAAGCCAAGGGGGCCAAATGCTCAAGTGTGTTCTTGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| CDS-3UTR GCA 90 bp | GCTGAGACATTAACAGTTGAACGAGAGACGTGGATCTGCAGTAACATTACAGGCCGTCTTGTGGGCTCCTaGTTAGTTAGCTTGGTTCCA | + |
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Preference number: 4 (lower is better) Translates to: AETLTVERETWICSNITGRLVGS*LVSLVP Trigger: TGGAACCAAGCTAACTAAGCAGGAGCCCACAAGACG...GCCTGTAATGTTACTGCAGATCCACGTCTCTCGTTCAACTGTTAATGTCTCAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000185315.7 ENSMUST00000190154.2 |
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| CDS-3UTR GCA 90 bp | GTGAAATCGACCCTAGTTTTCCACGACAATTCACTCTCCCTCCTTTTCTATAGACGTCTTGTGGGCTCCTaGTTAGTTAGCTTGGTTCCA | + |
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Preference number: 4 (lower is better) Translates to: VKSTLVFHDNSLSLLFYRRLVGS*LVSLVP Trigger: TGGAACCAAGCTAACTAAGCAGGAGCCCACAAGACG...TCTATAGAAAAGGAGGGAGAGTGAATTGTCGTGGAAAACTAGGGTCGATTTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000161796.9 ENSMUST00000185315.7 |
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| CDS-3UTR CCA 90 bp | AGACGTGGATCTGCAGTAACATTACAGGCGATAAAGAGAGACATTGTGAGCGTGAGTGGGAGGTGTTTGTaGAAAGTACCTCTTCAACTT | + |
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Preference number: 4 (lower is better) Translates to: RRGSAVTLQAIKRDIVSVSGRCL*KVPLQL Trigger: AAGTTGAAGAGGTACTTTCCACAAACACCTCCCACT...CACGCTCACAATGTCTCTCTTTATCGCCTGTAATGTTACTGCAGATCCACGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000185315.7 ENSMUST00000190154.2 |
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| CDS-3UTR CCA 90 bp | GTGAAATCGACCCTAGTTTTCCACGACAATTCACTCTCCCTCCTTTTCTATAGAAGTGGGAGGTGTTTGTaGAAAGTACCTCTTCAACTT | + |
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Preference number: 4 (lower is better) Translates to: VKSTLVFHDNSLSLLFYRSGRCL*KVPLQL Trigger: AAGTTGAAGAGGTACTTTCCACAAACACCTCCCACT...TCTATAGAAAAGGAGGGAGAGTGAATTGTCGTGGAAAACTAGGGTCGATTTCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185315.7 |
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| CDS-3UTR CAA 90 bp | ATAAAGAGAGACATTGTGAGCGTGCTATCCAGAGCTGAAGGGTTGAGCAGTTTCAGCTTGGTTCCATCTTaGCCCTCTGTGTTCTCGGGA | + |
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Preference number: 5 (lower is better) Translates to: IKRDIVSVLSRAEGLSSFSLVPS*PSVFSG Trigger: TCCCGAGAACACAGAGGGCAAAGATGGAACCAAGCT...GAAACTGCTCAACCCTTCAGCTCTGGATAGCACGCTCACAATGTCTCTCTTTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000185315.7 ENSMUST00000190154.2 |
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| CDS-3UTR CAA 90 bp | AGACGTGGATCTGCAGTAACATTACAGGCGATAAAGAGAGACATTGTGAGCGTGAGCTTGGTTCCATCTTaGCCCTCTGTGTTCTCGGGA | + |
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Preference number: 5 (lower is better) Translates to: RRGSAVTLQAIKRDIVSVSLVPS*PSVFSG Trigger: TCCCGAGAACACAGAGGGCAAAGATGGAACCAAGCT...CACGCTCACAATGTCTCTCTTTATCGCCTGTAATGTTACTGCAGATCCACGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000185315.7 ENSMUST00000190154.2 |
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| CDS-3UTR CAA 90 bp | GTGAAATCGACCCTAGTTTTCCACGACAATTCACTCTCCCTCCTTTTCTATAGAAGCTTGGTTCCATCTTaGCCCTCTGTGTTCTCGGGA | + |
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Preference number: 5 (lower is better) Translates to: VKSTLVFHDNSLSLLFYRSLVPS*PSVFSG Trigger: TCCCGAGAACACAGAGGGCAAAGATGGAACCAAGCT...TCTATAGAAAAGGAGGGAGAGTGAATTGTCGTGGAAAACTAGGGTCGATTTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000161796.9 ENSMUST00000185315.7 |
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| CDS CAA 72 bp | CTTGTGGGCTCCTGCTTAGTTAGCTTGGTTCCATCTTaGCCCTCTGTGTTCTCGGGAGACTTTCTCTTCGGC | + |
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Preference number: 6 (lower is better) Translates to: LVGSCLVSLVPS*PSVFSGDFLFG Trigger: GCCGAAGAGAAAGTCTCCCGAGAACACAGAGGGCAAAGATGGAACCAAGCTAACTAAGCAGGAGCCCACAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000161796.9 ENSMUST00000162246.9 ENSMUST00000185315.7 ENSMUST00000187193.7 ENSMUST00000190154.2 |
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| CDS CCA 72 bp | CTGCAGGCTGAGACATTAACAGTTGAACGAGAGACGTaGATCTCTTCAACTTTAGTGTCACCATTTGCAGAT | + |
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Preference number: 6 (lower is better) Translates to: LQAETLTVERET*ISSTLVSPFAD Trigger: ATCTGCAAATGGTGACACTAAAGTTGAAGAGATCCACGTCTCTCGTTCAACTGTTAATGTCTCAGCCTGCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187193.7 |
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