RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HMGN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040681

Ensembl transcript IDs: ENSMUST00000050884.16

Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGAGAGACACAGGCTGGTCAATGAGGCCAGCATGGGTTACACAGTaGGTTCCAGGACAGCTCAAGTGGGAGGTGAGGTTCAGATTCCCA +
Preference number: 1 (lower is better)
Translates to: LRDTGWSMRPAWVTQ*VPGQLKWEVRFRFP
Trigger: TGGGAATCTGAACCTCACCTCCCACTTGAGCTGTCCTGGAACTCACTGTGTAACCCATGCTGGCCTCATTGACCAGCCTGTGTCTCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR TCA 90 bp CAGCATGGGTTACACAGTGAGTTCCAGGACAGCTCAAGTGGGAGGTaGGGTTCAGATTCCCAAATTCCCTCATCAGCCAATCTACAAACT +
Preference number: 1 (lower is better)
Translates to: QHGLHSEFQDSSSGR*GSDSQIPSSANLQT
Trigger: AGTTTGTAGATTGGCTGATGAGGGAATTTGGGAATCTGAACCTCACCTCCCACTTGAGCTGTCCTGGAACTCACTGTGTAACCCATGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR GCA 90 bp CCTCTGGAAGAGCAGCCAGTGCTCTTAACCTCTGAGCTGTTCTTCTaGCAACAGCATGTGCTTTTAATTCCAGCATCCAAGACAGAGTCA +
Preference number: 1 (lower is better)
Translates to: PLEEQPVLLTSELFF*QQHVLLIPASKTES
Trigger: TGACTCTGTCTTGGATGCTGGAATTAAAAGCACATGCTGTTGGCAGAAGAACAGCTCAGAGGTTAAGAGCACTGGCTGCTCTTCCAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR TCA 90 bp ATTGAACTCAAGGCCTCTGGAAGAGCAGCCAGTGCTCTTAACCTCTaGGCTGTTCTTCTGCCAACAGCATGTGCTTTTAATTCCAGCATC +
Preference number: 1 (lower is better)
Translates to: IELKASGRAASALNL*AVLLPTACAFNSSI
Trigger: GATGCTGGAATTAAAAGCACATGCTGTTGGCAGAAGAACAGCTCAGAGGTTAAGAGCACTGGCTGCTCTTCCAGAGGCCTTGAGTTCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR CCA 90 bp CATGACCACAGACATCACAGTTCTGACAGGGCAAGGGCCAAGGACTaGCTTTCTTACAAAATGGTTCTACTAGAAACACGGGACCAGATA +
Preference number: 1 (lower is better)
Translates to: HDHRHHSSDRARAKD*LSYKMVLLETRDQI
Trigger: TATCTGGTCCCGTGTTTCTAGTAGAACCATTTTGTAAGAAAGCCAGTCCTTGGCCCTTGCCCTGTCAGAACTGTGATGTCTGTGGTCATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR CCA 90 bp ACATTTCCCCTAGGATGCACAATGACCCAGAACATTAGCCAGGCCTaGTGGTACATACCTATGACCTCAGCATGTAAGGCAAGAAAATCA +
Preference number: 1 (lower is better)
Translates to: TFPLGCTMTQNISQA*WYIPMTSACKARKS
Trigger: TGATTTTCTTGCCTTACATGCTGAGGTCATAGGTATGTACCACCAGGCCTGGCTAATGTTCTGGGTCATTGTGCATCCTAGGGGAAATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR CCA 90 bp TTTCCCCTAGGATGCACAATGACCCAGAACATTAGCCAGGCCTGGTaGTACATACCTATGACCTCAGCATGTAAGGCAAGAAAATCAATT +
Preference number: 1 (lower is better)
Translates to: FPLGCTMTQNISQAW*YIPMTSACKARKSI
Trigger: AATTGATTTTCTTGCCTTACATGCTGAGGTCATAGGTATGTACCACCAGGCCTGGCTAATGTTCTGGGTCATTGTGCATCCTAGGGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR GCA 90 bp AAGCAAGCTTGTTTCATGAGTGTCTCCATCTGTCAAGTAAGGGCTTaGACTGGTGCAAAGACCCAGCTTATAGATAACTTTACCAAGTCC +
Preference number: 1 (lower is better)
Translates to: KQACFMSVSICQVRA*TGAKTQLIDNFTKS
Trigger: GGACTTGGTAAAGTTATCTATAAGCTGGGTCTTTGCACCAGTGCAAGCCCTTACTTGACAGATGGAGACACTCATGAAACAAGCTTGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR TCA 90 bp ATGTACCCAAAAAGAGCCATATACTGTGTTCACGTACCCAAACTCTaGAGTCACATTGTGTTCATGTACACAAATGAAGAGCTACGTATT +
Preference number: 1 (lower is better)
Translates to: MYPKRAIYCVHVPKL*SHIVFMYTNEELRI
Trigger: AATACGTAGCTCTTCATTTGTGTACATGAACACAATGTGACTTCAGAGTTTGGGTACGTGAACACAGTATATGGCTCTTTTTGGGTACAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR-3UTR TCA 90 bp CATTTGGTGGTGTTGGGGGATAGACTCCAAGGACTACAAATACTGGGAAAACACCAGACATCACAGTTCTaGCAGGGCAAGGGCCAAGGA +
Preference number: 2 (lower is better)
Translates to: HLVVLGDRLQGLQILGKHQTSQF*QGKGQG
Trigger: TCCTTGGCCCTTGCCCTGTCAGAACTGTGATGTCTG...GTGTTTTCCCAGTATTTGTAGTCCTTGGAGTCTATCCCCCAACACCACCAAATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR-3UTR TCA 90 bp CCAACAGCATGTGCTTTTAATTCCAGCATCCAAGACAGAGTCAGGAGGATCCTAACACGAATGCACGACTaGGACGCCAAATTGCCATTT +
Preference number: 2 (lower is better)
Translates to: PTACAFNSSIQDRVRRILTRMHD*DAKLPF
Trigger: AAATGGCAATTTGGCGTCTCAGTCGTGCATTCGTGT...TAGGATCCTCCTGACTCTGTCTTGGATGCTGGAATTAAAAGCACATGCTGTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR-3UTR CCA 90 bp ACTCCAAGGACTACAAATACTGGGAAAACACCAAGTTCTTCCCAGGGACATGAAATTAGCCAGGCCTGGTaGTACATACCTATGACCTCA +
Preference number: 2 (lower is better)
Translates to: TPRTTNTGKTPSSSQGHEISQAW*YIPMTS
Trigger: TGAGGTCATAGGTATGTACCACCAGGCCTGGCTAAT...TTCATGTCCCTGGGAAGAACTTGGTGTTTTCCCAGTATTTGTAGTCCTTGGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR-3UTR TCA 90 bp TCCAATTTTTATTACATGTACCCAAAAAGAGCCATATACTGTGTTCACGTACCCTACGGAATGTTATGGTaGCCCCCGAGACAGTCACAG +
Preference number: 2 (lower is better)
Translates to: SNFYYMYPKRAIYCVHVPYGMLW*PPRQSQ
Trigger: CTGTGACTGTCTCGGGGGTCACCATAACATTCCGTA...GGGTACGTGAACACAGTATATGGCTCTTTTTGGGTACATGTAATAAAAATTGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR CAA 90 bp TCTGAAGTCACATTGTGTTCATGTACACAAATGAAGAGCTACGTATaGTTTTTCTTTGAACTTGTTCCAGTGACTCGGCAAGTTCCCCCA +
Preference number: 2 (lower is better)
Translates to: SEVTLCSCTQMKSYV*FFFELVPVTRQVPP
Trigger: TGGGGGAACTTGCCGAGTCACTGGAACAAGTTCAAAGAAAAACAATACGTAGCTCTTCATTTGTGTACATGAACACAATGTGACTTCAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR-3UTR GCA 90 bp CCAACAGCATGTGCTTTTAATTCCAGCATCCAAGACAGAGTCAGGAGGATCCTAACTGAGACGCCAAATTaGCATTTAGTATACTTTGTA +
Preference number: 2 (lower is better)
Translates to: PTACAFNSSIQDRVRRILTETPN*HLVYFV
Trigger: TACAAAGTATACTAAATGGCAATTTGGCGTCTCAGT...TAGGATCCTCCTGACTCTGTCTTGGATGCTGGAATTAAAAGCACATGCTGTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR-3UTR GCA 90 bp TCCAATTTTTATTACATGTACCCAAAAAGAGCCATATACTGTGTTCACGTACCCGTTAGGAAAATGGACTaGCATGACCACAGACATCAC +
Preference number: 2 (lower is better)
Translates to: SNFYYMYPKRAIYCVHVPVRKMD*HDHRHH
Trigger: GTGATGTCTGTGGTCATGGCAGTCCATTTTCCTAAC...GGGTACGTGAACACAGTATATGGCTCTTTTTGGGTACATGTAATAAAAATTGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR-3UTR GCA 90 bp AAACCCAAGTGCTTAGTCAACTCCAAGAGTCATTATCACAATGTAAACCTCTCATCTGAGCTGTTCTTCTaGCAACAGCATGTGCTTTTA +
Preference number: 2 (lower is better)
Translates to: KPKCLVNSKSHYHNVNLSSELFF*QQHVLL
Trigger: TAAAAGCACATGCTGTTGGCAGAAGAACAGCTCAGA...TGAGAGGTTTACATTGTGATAATGACTCTTGGAGTTGACTAAGCACTTGGGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR CAA 90 bp AAAGAGCCATATACTGTGTTCACGTACCCAAACTCTGAAGTCACATaGTGTTCATGTACACAAATGAAGAGCTACGTATTGTTTTTCTTT +
Preference number: 2 (lower is better)
Translates to: KEPYTVFTYPNSEVT*CSCTQMKSYVLFFF
Trigger: AAAGAAAAACAATACGTAGCTCTTCATTTGTGTACATGAACACAATGTGACTTCAGAGTTTGGGTACGTGAACACAGTATATGGCTCTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR CCA 72 bp CCAGATCGCACCACACATGAGTCACCATGTAGCAGCTaGGAATTGAACTCAAGGCCTCTGGAAGAGCAGCCA +
Preference number: 3 (lower is better)
Translates to: PDRTTHESPCSS*ELNSRPLEEQP
Trigger: TGGCTGCTCTTCCAGAGGCCTTGAGTTCAATTCCCAGCTGCTACATGGTGACTCATGTGTGGTGCGATCTGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR CCA 72 bp GGATGCACAATGACCCAGAACATTAGCCAGGCCTGGTaGTACATACCTATGACCTCAGCATGTAAGGCAAGA +
Preference number: 3 (lower is better)
Translates to: GCTMTQNISQAW*YIPMTSACKAR
Trigger: TCTTGCCTTACATGCTGAGGTCATAGGTATGTACCACCAGGCCTGGCTAATGTTCTGGGTCATTGTGCATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR TCA 72 bp TTACACAGTGAGTTCCAGGACAGCTCAAGTGGGAGGTaGGGTTCAGATTCCCAAATTCCCTCATCAGCCAAT +
Preference number: 3 (lower is better)
Translates to: LHSEFQDSSSGR*GSDSQIPSSAN
Trigger: ATTGGCTGATGAGGGAATTTGGGAATCTGAACCTCACCTCCCACTTGAGCTGTCCTGGAACTCACTGTGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR GCA 72 bp GAGCAGCCAGTGCTCTTAACCTCTGAGCTGTTCTTCTaGCAACAGCATGTGCTTTTAATTCCAGCATCCAAG +
Preference number: 3 (lower is better)
Translates to: EQPVLLTSELFF*QQHVLLIPASK
Trigger: CTTGGATGCTGGAATTAAAAGCACATGCTGTTGGCAGAAGAACAGCTCAGAGGTTAAGAGCACTGGCTGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR CCA 72 bp AGACATCACAGTTCTGACAGGGCAAGGGCCAAGGACTaGCTTTCTTACAAAATGGTTCTACTAGAAACACGG +
Preference number: 3 (lower is better)
Translates to: RHHSSDRARAKD*LSYKMVLLETR
Trigger: CCGTGTTTCTAGTAGAACCATTTTGTAAGAAAGCCAGTCCTTGGCCCTTGCCCTGTCAGAACTGTGATGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR TCA 72 bp CCCAGAACATTAGCCAGGCCTGGTGGTACATACCTATaGCCTCAGCATGTAAGGCAAGAAAATCAATTCAAC +
Preference number: 3 (lower is better)
Translates to: PRTLARPGGTYL*PQHVRQENQFN
Trigger: GTTGAATTGATTTTCTTGCCTTACATGCTGAGGTCATAGGTATGTACCACCAGGCCTGGCTAATGTTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR GCA 72 bp ACAATTATATTTATGTGCTCTATCTGTATGTACACCTaGATGTCAGAGGAGGCCACCAGATCGCACCACACA +
Preference number: 3 (lower is better)
Translates to: TIIFMCSICMYT*MSEEATRSHHT
Trigger: TGTGTGGTGCGATCTGGTGGCCTCCTCTGACATGCAGGTGTACATACAGATAGAGCACATAAATATAATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR CCA 72 bp ATGGTAGCCAGGACTTCAAGTCTGTGCAATTGGAATTaGTTAGGGAACTTTTCCCCATTCATTTGGTGGTGT +
Preference number: 3 (lower is better)
Translates to: MVARTSSLCNWN*LGNFSPFIWWC
Trigger: ACACCACCAAATGAATGGGGAAAAGTTCCCTAACCAATTCCAATTGCACAGACTTGAAGTCCTGGCTACCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR GCA 72 bp TGTTTCATGAGTGTCTCCATCTGTCAAGTAAGGGCTTaGACTGGTGCAAAGACCCAGCTTATAGATAACTTT +
Preference number: 3 (lower is better)
Translates to: CFMSVSICQVRA*TGAKTQLIDNF
Trigger: AAAGTTATCTATAAGCTGGGTCTTTGCACCAGTGCAAGCCCTTACTTGACAGATGGAGACACTCATGAAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR TCA 72 bp CAAACTCTGAAGTCACATTGTGTTCATGTACACAAATaGAGAGCTACGTATTGTTTTTCTTTGAACTTGTTC +
Preference number: 3 (lower is better)
Translates to: QTLKSHCVHVHK*RATYCFSLNLF
Trigger: GAACAAGTTCAAAGAAAAACAATACGTAGCTCTTCATTTGTGTACATGAACACAATGTGACTTCAGAGTTTG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
CDS-3UTR GCA 90 bp CCTCAGCATGTAAGGCAAGAAAATCAATTCAACGTCACTCATGGCTACAAAGCAGGCAGCTCTGTGGTTTaGTGGTCAGCCACGTCAGCC +
Preference number: 4 (lower is better)
Translates to: PQHVRQENQFNVTHGYKAGSSVV*WSATSA
Trigger: GGCTGACGTGGCTGACCAGCAAACCACAGAGCTGCC...TGCTTTGTAGCCATGAGTGACGTTGAATTGATTTTCTTGCCTTACATGCTGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
CDS-3UTR CCA 90 bp ACTCCAAGGACTACAAATACTGGGAAAACACCAAGTTCTTCCCAGGGACATGAACTGCAGGCAGCTCTGTaGTTTGCTGGTCAGCCACGT +
Preference number: 4 (lower is better)
Translates to: TPRTTNTGKTPSSSQGHELQAAL*FAGQPR
Trigger: ACGTGGCTGACCAGCAAACCACAGAGCTGCCTGCAG...TTCATGTCCCTGGGAAGAACTTGGTGTTTTCCCAGTATTTGTAGTCCTTGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
CDS-3UTR GCA 90 bp GTTCTACTAGAAACACGGGACCAGATAGAACTGAAAATATTTCAGACACGAATGCCACGTCAGCCTGTTTaGCCTTCGCTCCCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: VLLETRDQIELKIFQTRMPRQPV*PSLPSS
Trigger: GGAAGAGGGGAGCGAAGGGCAAACAGGCTGACGTGG...CATTCGTGTCTGAAATATTTTCAGTTCTATCTGGTCCCGTGTTTCTAGTAGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
CDS-3UTR CCA 90 bp CATTTGGTGGTGTTGGGGGATAGACTCCAAGGACTACAAATACTGGGAAAACACCTCTTCTTCAGAGGCTaGACTCTGGTTTTCCGTCTC +
Preference number: 4 (lower is better)
Translates to: HLVVLGDRLQGLQILGKHLFFRG*TLVFRL
Trigger: GAGACGGAAAACCAGAGTCCAGCCTCTGAAGAAGAG...GTGTTTTCCCAGTATTTGTAGTCCTTGGAGTCTATCCCCCAACACCACCAAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
CDS-3UTR GCA 90 bp GTTCTACTAGAAACACGGGACCAGATAGAACTGAAAATATTTCAGACACGAATGCGTCTCTCCATTTTCTaGAGGCAGCTCTGTGGTTTG +
Preference number: 4 (lower is better)
Translates to: VLLETRDQIELKIFQTRMRLSIF*RQLCGL
Trigger: CAAACCACAGAGCTGCCTGCAGAAAATGGAGAGACG...CATTCGTGTCTGAAATATTTTCAGTTCTATCTGGTCCCGTGTTTCTAGTAGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
3UTR CAA 72 bp TATACTGTGTTCACGTACCCAAACTCTGAAGTCACATaGTGTTCATGTACACAAATGAAGAGCTACGTATTG +
Preference number: 4 (lower is better)
Translates to: YTVFTYPNSEVT*CSCTQMKSYVL
Trigger: CAATACGTAGCTCTTCATTTGTGTACATGAACACAATGTGACTTCAGAGTTTGGGTACGTGAACACAGTATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
CDS-3UTR CAA 90 bp TCTGACAGGGCAAGGGCCAAGGACTGGCTTTCTTACAAAATGGTTCTACTAGAATTGGCAGGGGCGGGCTaGGCCGACAGCCTCGCGGAG +
Preference number: 5 (lower is better)
Translates to: SDRARAKDWLSYKMVLLELAGAG*ADSLAE
Trigger: CTCCGCGAGGCTGTCGGCCAAGCCCGCCCCTGCCAA...TTCTAGTAGAACCATTTTGTAAGAAAGCCAGTCCTTGGCCCTTGCCCTGTCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16
CDS-3UTR CAA 90 bp GTGTTCACGTACCCAAACTCTGAAGTCACATTGTGTTCATGTACACAAATGAAGAGGCAGCTCTGTGGTTaGCTGGTCAGCCACGTCAGC +
Preference number: 5 (lower is better)
Translates to: VFTYPNSEVTLCSCTQMKRQLCG*LVSHVS
Trigger: GCTGACGTGGCTGACCAGCAAACCACAGAGCTGCCT...CTTCATTTGTGTACATGAACACAATGTGACTTCAGAGTTTGGGTACGTGAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050884.16