Pregenerated sensors for HMGCS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000093930Ensembl transcript IDs: ENSMUST00000179869.3, ENSMUST00000224188.2
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCCTGCCCCATCCTTCCTACTTCACACTTTATCCCCCAGGGAGGGTaGTCAGGAGGGCAGCAAGCTCCAGCGCCATCTCTCAGTGCTGCT | + |
|
Preference number: 1 (lower is better) Translates to: ACPILPTSHFIPQGG*SGGQQAPAPSLSAA Trigger: AGCAGCACTGAGAGATGGCGCTGGAGCTTGCTGCCCTCCTGAGCACCCTCCCTGGGGGATAAAGTGTGAAGTAGGAAGGATGGGGCAGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR GCA 90 bp | AAGGTGTGGTTAACGCTCCGTGCCAGTACCGCCAGGCTTGCCCATTaGCGGCAATGGACTCTGAGAAAACCCACTTCTTGGCACCCAAAC | + |
|
Preference number: 1 (lower is better) Translates to: KVWLTLRASTARLAH*RQWTLRKPTSWHPN Trigger: GTTTGGGTGCCAAGAAGTGGGTTTTCTCAGAGTCCATTGCCGGCAATGGGCAAGCCTGGCGGTACTGGCACGGAGCGTTAACCACACCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR-3UTR CCA 90 bp | GGAGGGCAGCAAGCTCCAGCGCCATCTCTCAGTGCTGCTGAGCACTGCCACGGACCCTGCCCAACACGATaGAGGCCTGCTCAGTGCCAG | + |
|
Preference number: 2 (lower is better) Translates to: GGQQAPAPSLSAAEHCHGPCPTR*RPAQCQ Trigger: CTGGCACTGAGCAGGCCTCCATCGTGTTGGGCAGGG...TCCGTGGCAGTGCTCAGCAGCACTGAGAGATGGCGCTGGAGCTTGCTGCCCTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR-3UTR CCA 90 bp | GGGCAGCAAGCTCCAGCGCCATCTCTCAGTGCTGCTGAGCACTGCCACGGAGACCCCTGCCCAACACGATaGAGGCCTGCTCAGTGCCAG | + |
|
Preference number: 2 (lower is better) Translates to: GQQAPAPSLSAAEHCHGDPCPTR*RPAQCQ Trigger: CTGGCACTGAGCAGGCCTCCATCGTGTTGGGCAGGG...GTCTCCGTGGCAGTGCTCAGCAGCACTGAGAGATGGCGCTGGAGCTTGCTGCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR-3UTR CCA 90 bp | TGCCGGCAATGGACTCTGAGAAAACCCACTTCTTGGCACCCAAACGTTAAAATTCAGTACATTTACCACTaGCCAGACCACAACAGGAAG | + |
|
Preference number: 2 (lower is better) Translates to: CRQWTLRKPTSWHPNVKIQYIYH*PDHNRK Trigger: CTTCCTGTTGTGGTCTGGCCAGTGGTAAATGTACTG...AATTTTAACGTTTGGGTGCCAAGAAGTGGGTTTTCTCAGAGTCCATTGCCGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR-3UTR GCA 90 bp | TGCCGGCAATGGACTCTGAGAAAACCCACTTCTTGGCACCCAAACGTTAAAATTAGTACCTCTGCCTTTTaGTGTCAGAAGCACTCAGTT | + |
|
Preference number: 2 (lower is better) Translates to: CRQWTLRKPTSWHPNVKISTSAF*CQKHSV Trigger: AACTGAGTGCTTCTGACAGCAAAAGGCAGAGGTACT...AATTTTAACGTTTGGGTGCCAAGAAGTGGGTTTTCTCAGAGTCCATTGCCGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR-3UTR TCA 90 bp | ATCTGTAACACTAACCTAATAATGCCTGCCCCATCCTTCCTACTTCACACTTTAAGTTCATACCACATCTaGAAACTAAACTGCATGCGT | + |
|
Preference number: 2 (lower is better) Translates to: ICNTNLIMPAPSFLLHTLSSYHI*KLNCMR Trigger: ACGCATGCAGTTTAGTTTTCAGATGTGGTATGAACT...TAAAGTGTGAAGTAGGAAGGATGGGGCAGGCATTATTAGGTTAGTGTTACAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR-3UTR GCA 90 bp | CCAGAGAGGTATAAAGTTCTACAGAGCCCTTTAACATCACTGCAGTACATTTACAAGCAACACATAATCTaGAAAATTGTCCCAAGACAT | + |
|
Preference number: 2 (lower is better) Translates to: PERYKVLQSPLTSLQYIYKQHII*KIVPRH Trigger: ATGTCTTGGGACAATTTTGCAGATTATGTGTTGCTT...GTAAATGTACTGCAGTGATGTTAAAGGGCTCTGTAGAACTTTATACCTCTCTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR-3UTR GCA 90 bp | CCACATCTGAAAACTAAACTGCATGCGTATAAACATCCAGAGAGGTATAAAGTTAAGCAACACATAATCTaGAAAATTGTCCCAAGACAT | + |
|
Preference number: 2 (lower is better) Translates to: PHLKTKLHAYKHPERYKVKQHII*KIVPRH Trigger: ATGTCTTGGGACAATTTTGCAGATTATGTGTTGCTT...AACTTTATACCTCTCTGGATGTTTATACGCATGCAGTTTAGTTTTCAGATGTGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR TCA 72 bp | AGGGCAGCAAGCTCCAGCGCCATCTCTCAGTGCTGCTaGGCACTGCCACGGAGACCTGGCCAAAAAGTTCCC | + |
|
Preference number: 3 (lower is better) Translates to: RAASSSAISQCC*ALPRRPGQKVP Trigger: GGGAACTTTTTGGCCAGGTCTCCGTGGCAGTGCTCAGCAGCACTGAGAGATGGCGCTGGAGCTTGCTGCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR GCA 72 bp | CAAGCTCCAGCGCCATCTCTCAGTGCTGCTGAGCACTaGCACGGAGACCTGGCCAAAAAGTTCCCGCAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: QAPAPSLSAAEH*HGDLAKKFPQL Trigger: CAGCTGCGGGAACTTTTTGGCCAGGTCTCCGTGGCAGTGCTCAGCAGCACTGAGAGATGGCGCTGGAGCTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR GCA 72 bp | GGTGTGGTTAACGCTCCGTGCCAGTACCGCCAGGCTTaGCCATTGCCGGCAATGGACTCTGAGAAAACCCAC | + |
|
Preference number: 3 (lower is better) Translates to: GVVNAPCQYRQA*PLPAMDSEKTH Trigger: GTGGGTTTTCTCAGAGTCCATTGCCGGCAATGGGCAAGCCTGGCGGTACTGGCACGGAGCGTTAACCACACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR CCA 72 bp | TGTCCACAACGCCCAGGTGTACCCTGCCCAACACGATaGAGGCCTGCTCAGTGCCAGCATCTTTCTGCTCAC | + |
|
Preference number: 3 (lower is better) Translates to: CPQRPGVPCPTR*RPAQCQHLSAH Trigger: GTGAGCAGAAAGATGCTGGCACTGAGCAGGCCTCCATCGTGTTGGGCAGGGTACACCTGGGCGTTGTGGACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR CCA 72 bp | CATCTCTCAGTGCTGCTGAGCACTGCCACGGAGACCTaGCCAAAAAGTTCCCGCAGCTGTGTCCACAACGCC | + |
|
Preference number: 3 (lower is better) Translates to: HLSVLLSTATET*PKSSRSCVHNA Trigger: GGCGTTGTGGACACAGCTGCGGGAACTTTTTGGCCAGGTCTCCGTGGCAGTGCTCAGCAGCACTGAGAGATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR GCA 72 bp | ACGCCCAGGTGTACCCTGCCCAACACGATGGAGGCCTaGTCAGTGCCAGCATCTTTCTGCTCACGTGATTAC | + |
|
Preference number: 3 (lower is better) Translates to: TPRCTLPNTMEA*SVPASFCSRDY Trigger: GTAATCACGTGAGCAGAAAGATGCTGGCACTGAGCAGGCCTCCATCGTGTTGGGCAGGGTACACCTGGGCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR GCA 72 bp | ATCCTTCCTACTTCACACTTTATCCCCCAGGGAGGGTaGTCAGGAGGGCAGCAAGCTCCAGCGCCATCTCTC | + |
|
Preference number: 3 (lower is better) Translates to: ILPTSHFIPQGG*SGGQQAPAPSL Trigger: GAGAGATGGCGCTGGAGCTTGCTGCCCTCCTGAGCACCCTCCCTGGGGGATAAAGTGTGAAGTAGGAAGGAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR GCA 72 bp | TTAACGCTCCGTGCCAGTACCGCCAGGCTTGCCCATTaGCGGCAATGGACTCTGAGAAAACCCACTTCTTGG | + |
|
Preference number: 3 (lower is better) Translates to: LTLRASTARLAH*RQWTLRKPTSW Trigger: CCAAGAAGTGGGTTTTCTCAGAGTCCATTGCCGGCAATGGGCAAGCCTGGCGGTACTGGCACGGAGCGTTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR TCA 90 bp | GGGCAGCAAGCTCCAGCGCCATCTCTCAGTGCTGCTGAGCACTGCCACGGAGACAGCGGTCCAGGGCGCTaGGGTAGCACTGTATGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: GQQAPAPSLSAAEHCHGDSGPGR*GSTVWR Trigger: TCTCCATACAGTGCTACCTCAGCGCCCTGGACCGCT...GTCTCCGTGGCAGTGCTCAGCAGCACTGAGAGATGGCGCTGGAGCTTGCTGCCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CCA 90 bp | CCCTGCCCAACACGATGGAGGCCTGCTCAGTGCCAGCATCTTTCTGCTCACGTGAAGCCCATCCTGGCCTaGCCCAGGCCGATGGTATAC | + |
|
Preference number: 4 (lower is better) Translates to: PCPTRWRPAQCQHLSAHVKPILA*PRPMVY Trigger: GTATACCATCGGCCTGGGCCAGGCCAGGATGGGCTT...CACGTGAGCAGAAAGATGCTGGCACTGAGCAGGCCTCCATCGTGTTGGGCAGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR TCA 90 bp | GTCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATCCCGGCCCCGAGCTTCCCTGCCAACTGCTaGGGTGAGTACTGTGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VPRHPFLQPFPYPIPAPSFPANC*GEYCAR Trigger: CCTGGCACAGTACTCACCTCAGCAGTTGGCAGGGAA...GCTCGGGGCCGGGATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CCA 90 bp | CAGCGCCATCTCTCAGTGCTGCTGAGCACTGCCACGGAGACCTGGCCAAAAAGTAAGCCCATCCTGGCCTaGCCCAGGCCGATGGTATAC | + |
|
Preference number: 4 (lower is better) Translates to: QRHLSVLLSTATETWPKSKPILA*PRPMVY Trigger: GTATACCATCGGCCTGGGCCAGGCCAGGATGGGCTT...ACTTTTTGGCCAGGTCTCCGTGGCAGTGCTCAGCAGCACTGAGAGATGGCGCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | GTCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATCCCGGCCCCGAGCTGTCTTCACGATCCGTaGAGAAGCCCATCCTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: VPRHPFLQPFPYPIPAPSCLHDP*RSPSWP Trigger: AGGCCAGGATGGGCTTCTGCACGGATCGTGAAGACA...GCTCGGGGCCGGGATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | TCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATCCCGGCCCCGAGCCTGTCTTCACGATCCGTaGAGAAGCCCATCCTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: SQDIHSSNRFHTPSRPRACLHDP*RSPSWP Trigger: AGGCCAGGATGGGCTTCTGCACGGATCGTGAAGACA...GGCTCGGGGCCGGGATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | TCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATCCCGGCCCCGAGCCCACGGCATTGAAGACTaGAGCTGTGCCCCCATAGCA | + |
|
Preference number: 4 (lower is better) Translates to: SQDIHSSNRFHTPSRPRAHGIED*SCAPIA Trigger: TGCTATGGGGGCACAGCTGCAGTCTTCAATGCCGTG...GGCTCGGGGCCGGGATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR TCA 90 bp | GGAGGGCAGCAAGCTCCAGCGCCATCTCTCAGTGCTGCTGAGCACTGCCACGGACTCTCCATCAGTTTCTaGACCACAGTCAGGCAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: GGQQAPAPSLSAAEHCHGLSISF*TTVRQR Trigger: TCTTTGCCTGACTGTGGTTCAGAAACTGATGGAGAG...TCCGTGGCAGTGCTCAGCAGCACTGAGAGATGGCGCTGGAGCTTGCTGCCCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CCA 90 bp | GGGCAGCAAGCTCCAGCGCCATCTCTCAGTGCTGCTGAGCACTGCCACGGAGACGATTCCCACATCTTTTaGCCAGCAAGCCTCTGCATT | + |
|
Preference number: 4 (lower is better) Translates to: GQQAPAPSLSAAEHCHGDDSHIF*PASLCI Trigger: AATGCAGAGGCTTGCTGGCCAAAAGATGTGGGAATC...GTCTCCGTGGCAGTGCTCAGCAGCACTGAGAGATGGCGCTGGAGCTTGCTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| 3UTR CAA 72 bp | GTTAACGCTCCGTGCCAGTACCGCCAGGCTTGCCCATaGCCGGCAATGGACTCTGAGAAAACCCACTTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: VNAPCQYRQACP*PAMDSEKTHFL Trigger: CAAGAAGTGGGTTTTCTCAGAGTCCATTGCCGGCAATGGGCAAGCCTGGCGGTACTGGCACGGAGCGTTAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR TCA 90 bp | GTCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATCCCGGCCCCGAGCCTCTCCATCAGTTTCTaGACCACAGTCAGGCAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: VPRHPFLQPFPYPIPAPSLSISF*TTVRQR Trigger: TCTTTGCCTGACTGTGGTTCAGAAACTGATGGAGAG...GCTCGGGGCCGGGATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | GGGCAGCAAGCTCCAGCGCCATCTCTCAGTGCTGCTGAGCACTGCCACGGAGACTGGAATATGCTCTGTTaGTGTGTTACTATGCACGAG | + |
|
Preference number: 4 (lower is better) Translates to: GQQAPAPSLSAAEHCHGDWNMLC*CVTMHE Trigger: CTCGTGCATAGTAACACAGCAACAGAGCATATTCCA...GTCTCCGTGGCAGTGCTCAGCAGCACTGAGAGATGGCGCTGGAGCTTGCTGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CCA 90 bp | GGAGGGCAGCAAGCTCCAGCGCCATCTCTCAGTGCTGCTGAGCACTGCCACGGATTTCTTAGCAGGGCTTaGAATATGCTCTGTTGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: GGQQAPAPSLSAAEHCHGFLSRA*NMLCCC Trigger: ACAGCAACAGAGCATATTCCAAGCCCTGCTAAGAAA...TCCGTGGCAGTGCTCAGCAGCACTGAGAGATGGCGCTGGAGCTTGCTGCCCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | GTCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATCCCGGCCCCGAGCCTTCTAGCCGCCCAATaGAATCATAGGAAAGGCTAT | + |
|
Preference number: 4 (lower is better) Translates to: VPRHPFLQPFPYPIPAPSLLAAQ*NHRKGY Trigger: ATAGCCTTTCCTATGATTGCATTGGGCGGCTAGAAG...GCTCGGGGCCGGGATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | GTCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATCCCGGCCCCGAGCTGTGCCCCCATAGCATaGATTGGTTGTATCTATTCC | + |
|
Preference number: 4 (lower is better) Translates to: VPRHPFLQPFPYPIPAPSCAPIA*IGCIYS Trigger: GGAATAGATACAACCAATGCATGCTATGGGGGCACA...GCTCGGGGCCGGGATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CCA 90 bp | CAGCGCCATCTCTCAGTGCTGCTGAGCACTGCCACGGAGACCTGGCCAAAAAGTGATTCCCACATCTTTTaGCCAGCAAGCCTCTGCATT | + |
|
Preference number: 4 (lower is better) Translates to: QRHLSVLLSTATETWPKSDSHIF*PASLCI Trigger: AATGCAGAGGCTTGCTGGCCAAAAGATGTGGGAATC...ACTTTTTGGCCAGGTCTCCGTGGCAGTGCTCAGCAGCACTGAGAGATGGCGCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | CCCTGCCCAACACGATGGAGGCCTGCTCAGTGCCAGCATCTTTCTGCTCACGTGTGGAATATGCTCTGTTaGTGTGTTACTATGCACGAG | + |
|
Preference number: 4 (lower is better) Translates to: PCPTRWRPAQCQHLSAHVWNMLC*CVTMHE Trigger: CTCGTGCATAGTAACACAGCAACAGAGCATATTCCA...CACGTGAGCAGAAAGATGCTGGCACTGAGCAGGCCTCCATCGTGTTGGGCAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | CAGCGCCATCTCTCAGTGCTGCTGAGCACTGCCACGGAGACCTGGCCAAAAAGTTATAGCAATGTCTCCTaGAACTACCAGAGCATATCG | + |
|
Preference number: 4 (lower is better) Translates to: QRHLSVLLSTATETWPKSYSNVS*NYQSIS Trigger: CGATATGCTCTGGTAGTTGCAGGAGACATTGCTATA...ACTTTTTGGCCAGGTCTCCGTGGCAGTGCTCAGCAGCACTGAGAGATGGCGCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CCA 90 bp | GTCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATCCCGGCCCCGAGCGACGCCTTTGTTTTCTaGTTGAATAGCTCAGAACTA | + |
|
Preference number: 4 (lower is better) Translates to: VPRHPFLQPFPYPIPAPSDAFVF*LNSSEL Trigger: TAGTTCTGAGCTATTCAACCAGAAAACAAAGGCGTC...GCTCGGGGCCGGGATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CCA 90 bp | CCCTGCCCAACACGATGGAGGCCTGCTCAGTGCCAGCATCTTTCTGCTCACGTGGACGCCTTTGTTTTCTaGTTGAATAGCTCAGAACTA | + |
|
Preference number: 4 (lower is better) Translates to: PCPTRWRPAQCQHLSAHVDAFVF*LNSSEL Trigger: TAGTTCTGAGCTATTCAACCAGAAAACAAAGGCGTC...CACGTGAGCAGAAAGATGCTGGCACTGAGCAGGCCTCCATCGTGTTGGGCAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR TCA 90 bp | TGCCGGCAATGGACTCTGAGAAAACCCACTTCTTGGCACCCAAACGTTAAAATTTTCCCTGCCAACTGCTaGGGTGAGTACTGTGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: CRQWTLRKPTSWHPNVKIFPANC*GEYCAR Trigger: CCTGGCACAGTACTCACCTCAGCAGTTGGCAGGGAA...AATTTTAACGTTTGGGTGCCAAGAAGTGGGTTTTCTCAGAGTCCATTGCCGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | AATCTGCAAAATTGTCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATCACGGCATTGAAGACTaGAGCTGTGCCCCCATAGCA | + |
|
Preference number: 4 (lower is better) Translates to: NLQNCPKTSIPPTVSIPHHGIED*SCAPIA Trigger: TGCTATGGGGGCACAGCTGCAGTCTTCAATGCCGTG...ATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGACAATTTTGCAGATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | TGCCGGCAATGGACTCTGAGAAAACCCACTTCTTGGCACCCAAACGTTAAAATTAGCAAAGACATCCGGTaGCACACAAGTTCTCGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: CRQWTLRKPTSWHPNVKISKDIR*HTSSRV Trigger: GACTCGAGAACTTGTGTGGCACCGGATGTCTTTGCT...AATTTTAACGTTTGGGTGCCAAGAAGTGGGTTTTCTCAGAGTCCATTGCCGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR TCA 90 bp | AATCTGCAAAATTGTCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATTCAGGCAAAGAGAGTTaGTGTCTTCACGATCCGTGC | + |
|
Preference number: 4 (lower is better) Translates to: NLQNCPKTSIPPTVSIPHSGKES*CLHDPC Trigger: GCACGGATCGTGAAGACATCAACTCTCTTTGCCTGA...ATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGACAATTTTGCAGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR TCA 90 bp | AATCTGCAAAATTGTCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATGTTTTTCATCCACTCTaGCCAGATACCACGTTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: NLQNCPKTSIPPTVSIPHVFHPL*PDTTFL Trigger: AAGGAACGTGGTATCTGGTCAGAGTGGATGAAAAAC...ATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGACAATTTTGCAGATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CCA 90 bp | CCACATCTGAAAACTAAACTGCATGCGTATAAACATCCAGAGAGGTATAAAGTTGTCCATCCCAAGAGCTaGATTCGACCCAGTTCACGG | + |
|
Preference number: 4 (lower is better) Translates to: PHLKTKLHAYKHPERYKVVHPKS*IRPSSR Trigger: CCGTGAACTGGGTCGAATCCAGCTCTTGGGATGGAC...AACTTTATACCTCTCTGGATGTTTATACGCATGCAGTTTAGTTTTCAGATGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR TCA 90 bp | ATCTGTAACACTAACCTAATAATGCCTGCCCCATCCTTCCTACTTCACACTTTAGTTTTTCATCCACTCTaGCCAGATACCACGTTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: ICNTNLIMPAPSFLLHTLVFHPL*PDTTFL Trigger: AAGGAACGTGGTATCTGGTCAGAGTGGATGAAAAAC...TAAAGTGTGAAGTAGGAAGGATGGGGCAGGCATTATTAGGTTAGTGTTACAGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | CACAATAGCTTTCTGGGCTCTGTGTCAGTTACATTACATTTTAAGCAACACATATCCTTTCCCTCTTTCTaGCACTGGGCACGGATCTTT | + |
|
Preference number: 4 (lower is better) Translates to: HNSFLGSVSVTLHFKQHISFPSF*HWARIF Trigger: AAAGATCCGTGCCCAGTGGCAGAAAGAGGGAAAGGA...TATGTGTTGCTTAAAATGTAATGTAACTGACACAGAGCCCAGAAAGCTATTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | CCACATCTGAAAACTAAACTGCATGCGTATAAACATCCAGAGAGGTATAAAGTTTCCTTTCCCTCTTTCTaGCACTGGGCACGGATCTTT | + |
|
Preference number: 4 (lower is better) Translates to: PHLKTKLHAYKHPERYKVSFPSF*HWARIF Trigger: AAAGATCCGTGCCCAGTGGCAGAAAGAGGGAAAGGA...AACTTTATACCTCTCTGGATGTTTATACGCATGCAGTTTAGTTTTCAGATGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | CCACATCTGAAAACTAAACTGCATGCGTATAAACATCCAGAGAGGTATAAAGTTAGCAAAGACATCCGGTaGCACACAAGTTCTCGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: PHLKTKLHAYKHPERYKVSKDIR*HTSSRV Trigger: GACTCGAGAACTTGTGTGGCACCGGATGTCTTTGCT...AACTTTATACCTCTCTGGATGTTTATACGCATGCAGTTTAGTTTTCAGATGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CCA 90 bp | CCACATCTGAAAACTAAACTGCATGCGTATAAACATCCAGAGAGGTATAAAGTTCCTTCATCCAAACTGTaGTCATTTGTGAAGGGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: PHLKTKLHAYKHPERYKVPSSKL*SFVKGR Trigger: GCGCCCCTTCACAAATGACCACAGTTTGGATGAAGG...AACTTTATACCTCTCTGGATGTTTATACGCATGCAGTTTAGTTTTCAGATGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR TCA 90 bp | ATCTTTGAAAAAGATAAATGTTTGCCTTGCCATTTTCAAACAGGGTCTTGTGTGTCAGGCAAAGAGAGTTaGTGTCTTCACGATCCGTGC | + |
|
Preference number: 4 (lower is better) Translates to: IFEKDKCLPCHFQTGSCVSGKES*CLHDPC Trigger: GCACGGATCGTGAAGACATCAACTCTCTTTGCCTGA...CACACAAGACCCTGTTTGAAAATGGCAAGGCAAACATTTATCTTTTTCAAAGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | AAAAATTGGACACTAGTACCTCTGCCTTTTGCTGTCAGAAGCACTCAGTTCATATATAGCAATGTCTCCTaGAACTACCAGAGCATATCG | + |
|
Preference number: 4 (lower is better) Translates to: KNWTLVPLPFAVRSTQFIYSNVS*NYQSIS Trigger: CGATATGCTCTGGTAGTTGCAGGAGACATTGCTATA...TATGAACTGAGTGCTTCTGACAGCAAAAGGCAGAGGTACTAGTGTCCAATTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CCA 90 bp | ATCTTTGAAAAAGATAAATGTTTGCCTTGCCATTTTCAAACAGGGTCTTGTGTGCCTTCATCCAAACTGTaGTCATTTGTGAAGGGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: IFEKDKCLPCHFQTGSCVPSSKL*SFVKGR Trigger: GCGCCCCTTCACAAATGACCACAGTTTGGATGAAGG...CACACAAGACCCTGTTTGAAAATGGCAAGGCAAACATTTATCTTTTTCAAAGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CCA 90 bp | AAAAATTGGACACTAGTACCTCTGCCTTTTGCTGTCAGAAGCACTCAGTTCATATTTCTTAGCAGGGCTTaGAATATGCTCTGTTGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: KNWTLVPLPFAVRSTQFIFLSRA*NMLCCC Trigger: ACAGCAACAGAGCATATTCCAAGCCCTGCTAAGAAA...TATGAACTGAGTGCTTCTGACAGCAAAAGGCAGAGGTACTAGTGTCCAATTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR GCA 90 bp | CCACATCTGAAAACTAAACTGCATGCGTATAAACATCCAGAGAGGTATAAAGTTCTTCTAGCCGCCCAATaGAATCATAGGAAAGGCTAT | + |
|
Preference number: 4 (lower is better) Translates to: PHLKTKLHAYKHPERYKVLLAAQ*NHRKGY Trigger: ATAGCCTTTCCTATGATTGCATTGGGCGGCTAGAAG...AACTTTATACCTCTCTGGATGTTTATACGCATGCAGTTTAGTTTTCAGATGTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CAA 90 bp | GGGCAGCAAGCTCCAGCGCCATCTCTCAGTGCTGCTGAGCACTGCCACGGAGACACCCAGTTCACGGCATaGAAGACTGCAGCTGTGCCC | + |
|
Preference number: 5 (lower is better) Translates to: GQQAPAPSLSAAEHCHGDTQFTA*KTAAVP Trigger: GGGCACAGCTGCAGTCTTCAATGCCGTGAACTGGGT...GTCTCCGTGGCAGTGCTCAGCAGCACTGAGAGATGGCGCTGGAGCTTGCTGCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CAA 90 bp | TCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATCCCGGCCCCGAGCCACCCAGTTCACGGCATaGAAGACTGCAGCTGTGCCC | + |
|
Preference number: 5 (lower is better) Translates to: SQDIHSSNRFHTPSRPRATQFTA*KTAAVP Trigger: GGGCACAGCTGCAGTCTTCAATGCCGTGAACTGGGT...GGCTCGGGGCCGGGATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CAA 90 bp | GGGCAGCAAGCTCCAGCGCCATCTCTCAGTGCTGCTGAGCACTGCCACGGAGACAAATTAGAGGAGCGTTaGGCCCAATTAGCAGGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: GQQAPAPSLSAAEHCHGDKLEER*AQLAGP Trigger: TGGCCCTGCTAATTGGGCCAAACGCTCCTCTAATTT...GTCTCCGTGGCAGTGCTCAGCAGCACTGAGAGATGGCGCTGGAGCTTGCTGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CAA 90 bp | GTCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATCCCGGCCCCGAGCCGATTCCCACATCTTTaGGCCAGCAAGCCTCTGCAT | + |
|
Preference number: 5 (lower is better) Translates to: VPRHPFLQPFPYPIPAPSRFPHL*ASKPLH Trigger: ATGCAGAGGCTTGCTGGCCAAAAGATGTGGGAATCG...GCTCGGGGCCGGGATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CAA 90 bp | TCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATCCCGGCCCCGAGCCTCCTGGTGTGGCGTCTaGTGTGACTTTAAGGGAGTA | + |
|
Preference number: 5 (lower is better) Translates to: SQDIHSSNRFHTPSRPRASWCGV*CDFKGV Trigger: TACTCCCTTAAAGTCACACAAGACGCCACACCAGGA...GGCTCGGGGCCGGGATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS GCA 90 bp | ACCTGTAGGTCTGGCATTTCCTGTGGCATATATAGCAATGTCTCCTaGAACTACCAGAGCATATCGTCCATCCCAAGAGCTGGATTCGAC | + |
|
Preference number: 5 (lower is better) Translates to: TCRSGISCGIYSNVS*NYQSISSIPRAGFD Trigger: GTCGAATCCAGCTCTTGGGATGGACGATATGCTCTGGTAGTTGCAGGAGACATTGCTATATATGCCACAGGAAATGCCAGACCTACAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CAA 90 bp | AATCTGCAAAATTGTCCCAAGACATCCATTCCTCCAACCGTTTCCATACCCCATGCCTTTGTTTTCTGGTaGAATAGCTCAGAACTAGCC | + |
|
Preference number: 5 (lower is better) Translates to: NLQNCPKTSIPPTVSIPHAFVFW*NSSELA Trigger: GGCTAGTTCTGAGCTATTCAACCAGAAAACAAAGGC...ATGGGGTATGGAAACGGTTGGAGGAATGGATGTCTTGGGACAATTTTGCAGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CAA 90 bp | CACAATAGCTTTCTGGGCTCTGTGTCAGTTACATTACATTTTAAGCAACACATACGATTCCCACATCTTTaGGCCAGCAAGCCTCTGCAT | + |
|
Preference number: 5 (lower is better) Translates to: HNSFLGSVSVTLHFKQHIRFPHL*ASKPLH Trigger: ATGCAGAGGCTTGCTGGCCAAAAGATGTGGGAATCG...TATGTGTTGCTTAAAATGTAATGTAACTGACACAGAGCCCAGAAAGCTATTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CAA 90 bp | ATCTGTAACACTAACCTAATAATGCCTGCCCCATCCTTCCTACTTCACACTTTAGCCTTTGTTTTCTGGTaGAATAGCTCAGAACTAGCC | + |
|
Preference number: 5 (lower is better) Translates to: ICNTNLIMPAPSFLLHTLAFVFW*NSSELA Trigger: GGCTAGTTCTGAGCTATTCAACCAGAAAACAAAGGC...TAAAGTGTGAAGTAGGAAGGATGGGGCAGGCATTATTAGGTTAGTGTTACAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CAA 90 bp | CCACATCTGAAAACTAAACTGCATGCGTATAAACATCCAGAGAGGTATAAAGTTTCCTGGTGTGGCGTCTaGTGTGACTTTAAGGGAGTA | + |
|
Preference number: 5 (lower is better) Translates to: PHLKTKLHAYKHPERYKVSWCGV*CDFKGV Trigger: TACTCCCTTAAAGTCACACAAGACGCCACACCAGGA...AACTTTATACCTCTCTGGATGTTTATACGCATGCAGTTTAGTTTTCAGATGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CAA 90 bp | ATCTTTGAAAAAGATAAATGTTTGCCTTGCCATTTTCAAACAGGGTCTTGTGTGAAATTAGAGGAGCGTTaGGCCCAATTAGCAGGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: IFEKDKCLPCHFQTGSCVKLEER*AQLAGP Trigger: TGGCCCTGCTAATTGGGCCAAACGCTCCTCTAATTT...CACACAAGACCCTGTTTGAAAATGGCAAGGCAAACATTTATCTTTTTCAAAGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CAA 90 bp | CCAGAGAGGTATAAAGTTCTACAGAGCCCTTTAACATCACTGCAGTACATTTACAGCTTGATCGACATATaGAGAAGGAAAGTAGATTTC | + |
|
Preference number: 5 (lower is better) Translates to: PERYKVLQSPLTSLQYIYSLIDI*RRKVDF Trigger: GAAATCTACTTTCCTTCTCAATATGTCGATCAAGCT...GTAAATGTACTGCAGTGATGTTAAAGGGCTCTGTAGAACTTTATACCTCTCTGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CAA 90 bp | CACAATAGCTTTCTGGGCTCTGTGTCAGTTACATTACATTTTAAGCAACACATATTTTTCCAACTCAGCTaGATCGACATATTGAGAAGG | + |
|
Preference number: 5 (lower is better) Translates to: HNSFLGSVSVTLHFKQHIFFQLS*IDILRR Trigger: CCTTCTCAATATGTCGATCAAGCTGAGTTGGAAAAA...TATGTGTTGCTTAAAATGTAATGTAACTGACACAGAGCCCAGAAAGCTATTGTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS-3UTR CAA 90 bp | ATCTTTGAAAAAGATAAATGTTTGCCTTGCCATTTTCAAACAGGGTCTTGTGTGAGCTTGATCGACATATaGAGAAGGAAAGTAGATTTC | + |
|
Preference number: 5 (lower is better) Translates to: IFEKDKCLPCHFQTGSCVSLIDI*RRKVDF Trigger: GAAATCTACTTTCCTTCTCAATATGTCGATCAAGCT...CACACAAGACCCTGTTTGAAAATGGCAAGGCAAACATTTATCTTTTTCAAAGAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS TCA 72 bp | CGAGCCCCATTCCTTCATCCAAACTGTGGTCATTTGTaGAGGGGCGCCGGGCGTAAGTCCTTCTGTGTTTTT | + |
|
Preference number: 6 (lower is better) Translates to: RAPFLHPNCGHL*RGAGRKSFCVF Trigger: AAAAACACAGAAGGACTTACGCCCGGCGCCCCTTCACAAATGACCACAGTTTGGATGAAGGAATGGGGCTCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS GCA 72 bp | TCTGGCATTTCCTGTGGCATATATAGCAATGTCTCCTaGAACTACCAGAGCATATCGTCCATCCCAAGAGCT | + |
|
Preference number: 6 (lower is better) Translates to: SGISCGIYSNVS*NYQSISSIPRA Trigger: AGCTCTTGGGATGGACGATATGCTCTGGTAGTTGCAGGAGACATTGCTATATATGCCACAGGAAATGCCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS CAA 90 bp | AGCATCTACACCATCGTATTTTTCCAACTCAGCTTGATCGACATATaGAGAAGGAAAGTAGATTTCAAGGGCAACGATTCCCACATCTTT | + |
|
Preference number: 6 (lower is better) Translates to: SIYTIVFFQLSLIDI*RRKVDFKGNDSHIF Trigger: AAAGATGTGGGAATCGTTGCCCTTGAAATCTACTTTCCTTCTCAATATGTCGATCAAGCTGAGTTGGAAAAATACGATGGTGTAGATGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||
| CDS CAA 72 bp | TCCAGCATCTACACCATCGTATTTTTCCAACTCAGCTaGATCGACATATTGAGAAGGAAAGTAGATTTCAAG | + |
|
Preference number: 6 (lower is better) Translates to: SSIYTIVFFQLS*IDILRRKVDFK Trigger: CTTGAAATCTACTTTCCTTCTCAATATGTCGATCAAGCTGAGTTGGAAAAATACGATGGTGTAGATGCTGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000179869.3 ENSMUST00000224188.2 |
||