RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HMGCR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021670

Ensembl transcript IDs: ENSMUST00000022176.15, ENSMUST00000168855.2, ENSMUST00000169196.8, ENSMUST00000169202.2, ENSMUST00000169945.8, ENSMUST00000169966.2, ENSMUST00000170287.8, ENSMUST00000171537.2

Found 277 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGCATCCTGGCCACATGCGATGTAGATAGCAGTGACAATGTTTGCTaGGTGGGCGTTGTAGCCGCCTATGCTCCCAGCCATGGCCGAGCC +
Preference number: 1 (lower is better)
Translates to: CILATCDVDSSDNVC*VGVVAAYAPSHGRA
Trigger: GGCTCGGCCATGGCTGGGAGCATAGGCGGCTACAACGCCCACGCAGCAAACATTGTCACTGCTATCTACATCGCATGTGGCCAGGATGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR GCA 90 bp TGCTGCATCCTGGCCACATGCGATGTAGATAGCAGTGACAATGTTTaGTGCGTGGGCGTTGTAGCCGCCTATGCTCCCAGCCATGGCCGA +
Preference number: 1 (lower is better)
Translates to: CCILATCDVDSSDNV*CVGVVAAYAPSHGR
Trigger: TCGGCCATGGCTGGGAGCATAGGCGGCTACAACGCCCACGCAGCAAACATTGTCACTGCTATCTACATCGCATGTGGCCAGGATGCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR GCA 90 bp CTGCTGCCAAGGCTGCCATCAAGGACAGCTCACCAGCCATCACAGTaGCACATACAATTCGGGCAAGCTGCCGTGCGTTTTCTCCAGGAT +
Preference number: 1 (lower is better)
Translates to: LLPRLPSRTAHQPSQ*HIQFGQAAVRFLQD
Trigger: ATCCTGGAGAAAACGCACGGCAGCTTGCCCGAATTGTATGTGGCACTGTGATGGCTGGTGAGCTGTCCTTGATGGCAGCCTTGGCAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR TCA 90 bp TGGCTCCAGCAGTTTGGCCTATGGACATCTCCTCGGGATGTTTCTTaGTTGCAAACTGATGAAGAACCCAGTCCCTGGGCCTGGGCAGTC +
Preference number: 1 (lower is better)
Translates to: WLQQFGLWTSPRDVS*LQTDEEPSPWAWAV
Trigger: GACTGCCCAGGCCCAGGGACTGGGTTCTTCATCAGTTTGCAATCAAGAAACATCCCGAGGAGATGTCCATAGGCCAAACTGCTGGAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
3UTR TCA 90 bp CAGCTCCAGGGCCATTCATGTGGCTCCATCATTGGCTCTGTAAGCTaGCTTTCCCTTCATTGGGCTTGGAAAGCAAGCCAGGGTTTCCTG +
Preference number: 1 (lower is better)
Translates to: QLQGHSCGSIIGSVS*LSLHWAWKASQGFL
Trigger: CAGGAAACCCTGGCTTGCTTTCCAAGCCCAATGAAGGGAAAGTCAGCTTACAGAGCCAATGATGGAGCCACATGAATGGCCCTGGAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR TCA 90 bp GATCTCTCCAGAACACAGCACGGAAAGAACCAGAGTTCCCACATCTaGGGAGTCTCTGTGCAAAGAACCTCAGACGTCTCTGAAAGCGCC +
Preference number: 1 (lower is better)
Translates to: DLSRTQHGKNQSSHI*GVSVQRTSDVSESA
Trigger: GGCGCTTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAGATGTGGGAACTCTGGTTCTTTCCGTGCTGTGTTCTGGAGAGATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000168855.2
3UTR GCA 90 bp CACAGCACGGAAAGAACCAGAGTTCCCACATCTGAGGAGTCTCTGTaGAAAGAACCTCAGACGTCTCTGAAAGCGCCAGAAACCAAGCAG +
Preference number: 1 (lower is better)
Translates to: HSTERTRVPTSEESL*KEPQTSLKAPETKQ
Trigger: CTGCTTGGTTTCTGGCGCTTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAGATGTGGGAACTCTGGTTCTTTCCGTGCTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000168855.2
3UTR GCA 90 bp ATACAATTCGGGCAAGCTGCCGTGCGTTTTCTCCAGGATTGTCTTTaGATGCTCCTTGAACACCTAGCATCTGCAGGCAGGCTTGCTGAG +
Preference number: 1 (lower is better)
Translates to: IQFGQAAVRFLQDCL*MLLEHLASAGRLAE
Trigger: CTCAGCAAGCCTGCCTGCAGATGCTAGGTGTTCAAGGAGCATGCAAAGACAATCCTGGAGAAAACGCACGGCAGCTTGCCCGAATTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR TCA 90 bp TTCCCACATCTGAGGAGTCTCTGTGCAAAGAACCTCAGACGTCTCTaGAAGCGCCAGAAACCAAGCAGGGGTGTCACTGATCATGTCCAT +
Preference number: 1 (lower is better)
Translates to: FPHLRSLCAKNLRRL*KRQKPSRGVTDHVH
Trigger: ATGGACATGATCAGTGACACCCCTGCTTGGTTTCTGGCGCTTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAGATGTGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000168855.2
3UTR GCA 90 bp GTTGTGAACCATGTGACTTCTGACAAGATGTCCTGCTGCCAAGGCTaGCATCAAGGACAGCTCACCAGCCATCACAGTGCCACATACAAT +
Preference number: 1 (lower is better)
Translates to: VVNHVTSDKMSCCQG*HQGQLTSHHSATYN
Trigger: ATTGTATGTGGCACTGTGATGGCTGGTGAGCTGTCCTTGATGGCAGCCTTGGCAGCAGGACATCTTGTCAGAAGTCACATGGTTCACAAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR GCA 90 bp ATCTTCCACAATAATACTGACACAATCACTAAGAGGCTCCCATGCTaGCGCGGCACTCTTGGAATGTCTTTCAGAGTCCATCTTCTACAC +
Preference number: 1 (lower is better)
Translates to: IFHNNTDTITKRLPC*RGTLGMSFRVHLLH
Trigger: GTGTAGAAGATGGACTCTGAAAGACATTCCAAGAGTGCCGCGGCAGCATGGGAGCCTCTTAGTGATTGTGTCAGTATTATTGTGGAAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR GCA 90 bp GCAATCTTCCACAATAATACTGACACAATCACTAAGAGGCTCCCATaGTGCCGCGGCACTCTTGGAATGTCTTTCAGAGTCCATCTTCTA +
Preference number: 1 (lower is better)
Translates to: AIFHNNTDTITKRLP*CRGTLGMSFRVHLL
Trigger: TAGAAGATGGACTCTGAAAGACATTCCAAGAGTGCCGCGGCAGCATGGGAGCCTCTTAGTGATTGTGTCAGTATTATTGTGGAAGATTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR CCA 90 bp CAAGCCAGGGTTTCCTGGACCAGTGCTAACGAGCACTGTCTTCTCTaGCCCAAGCTAGAGTATTTTATCAGTGTAAAAGTTGAGTTCTTT +
Preference number: 1 (lower is better)
Translates to: QARVSWTSANEHCLL*PKLEYFISVKVEFF
Trigger: AAAGAACTCAACTTTTACACTGATAAAATACTCTAGCTTGGGCCAGAGAAGACAGTGCTCGTTAGCACTGGTCCAGGAAACCCTGGCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR CCA 90 bp ATGCCCGCGCTTCAGTTCAGTGTCAGGATCCTCAAGCTGCCTTCTTaGTGCACGTTCCTTGAAGATCTTGTAAATTTATCTTTGATCTGT +
Preference number: 1 (lower is better)
Translates to: MPALQFSVRILKLPS*CTFLEDLVNLSLIC
Trigger: ACAGATCAAAGATAAATTTACAAGATCTTCAAGGAACGTGCACCAAGAAGGCAGCTTGAGGATCCTGACACTGAACTGAAGCGCGGGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR TCA 90 bp GACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTTAGTCCTTaGGAACCCAATGCCCGCGCTTCAGTTCAGTGTCAGGATCCTCAA +
Preference number: 1 (lower is better)
Translates to: DSALRFLIHRLHVSP*EPNARASVQCQDPQ
Trigger: TTGAGGATCCTGACACTGAACTGAAGCGCGGGCATTGGGTTCTCAAGGACTAACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR-3UTR GCA 90 bp ACAAGATGTCCTGCTGCCAAGGCTGCCATCAAGGACAGCTCACCAGCCATCACAACAATTCGGGCAAGCTaGCGTGCGTTTTCTCCAGGA +
Preference number: 2 (lower is better)
Translates to: TRCPAAKAAIKDSSPAITTIRAS*RAFSPG
Trigger: TCCTGGAGAAAACGCACGGCAGCTTGCCCGAATTGT...TGTGATGGCTGGTGAGCTGTCCTTGATGGCAGCCTTGGCAGCAGGACATCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR CAA 90 bp TGGCTCCATCATTGGCTCTGTAAGCTGACTTTCCCTTCATTGGGCTaGGAAAGCAAGCCAGGGTTTCCTGGACCAGTGCTAACGAGCACT +
Preference number: 2 (lower is better)
Translates to: WLHHWLCKLTFPSLG*ESKPGFPGPVLTST
Trigger: AGTGCTCGTTAGCACTGGTCCAGGAAACCCTGGCTTGCTTTCCAAGCCCAATGAAGGGAAAGTCAGCTTACAGAGCCAATGATGGAGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR-3UTR GCA 90 bp CACAGTGCCACATACAATTCGGGCAAGCTGCCGTGCGTTTTCTCCAGGATTGTCTGCATCCTGGCCACATaGGATGTAGATAGCAGTGAC +
Preference number: 2 (lower is better)
Translates to: HSATYNSGKLPCVFSRIVCILAT*DVDSSD
Trigger: GTCACTGCTATCTACATCGCATGTGGCCAGGATGCA...GACAATCCTGGAGAAAACGCACGGCAGCTTGCCCGAATTGTATGTGGCACTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR-3UTR CCA 90 bp ACAAGATGTCCTGCTGCCAAGGCTGCCATCAAGGACAGCTCACCAGCCATCACACTTCGATCCAATTTATaGCAGCAGGCTTCTTGTCGG +
Preference number: 2 (lower is better)
Translates to: TRCPAAKAAIKDSSPAITLRSNL*QQASCR
Trigger: CCGACAAGAAGCCTGCTGCCATAAATTGGATCGAAG...TGTGATGGCTGGTGAGCTGTCCTTGATGGCAGCCTTGGCAGCAGGACATCTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR-3UTR GCA 90 bp AGAGGTGAGCCCCACACTGATCACCAGTTTCCAGCTTGTGGTAGCTTTCAGAAAAGCTCACATCTGTGGTaGTCAGAGCACCGGTACCAT +
Preference number: 2 (lower is better)
Translates to: RGEPHTDHQFPACGSFQKSSHLW*SEHRYH
Trigger: ATGGTACCGGTGCTCTGAGCACCACAGATGTGAGCT...TTTCTGAAAGCTACCACAAGCTGGAAACTGGTGATCAGTGTGGGGCTCACCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR-3UTR CCA 90 bp CTCCAGGATTGTCTTTGCATGCTCCTTGAACACCTAGCATCTGCAGGCAGGCTTTCTCACCACCTTGGCTaGAATGACGGCTTCACAAAC +
Preference number: 2 (lower is better)
Translates to: LQDCLCMLLEHLASAGRLSHHLG*NDGFTN
Trigger: GTTTGTGAAGCCGTCATTCCAGCCAAGGTGGTGAGA...AAGCCTGCCTGCAGATGCTAGGTGTTCAAGGAGCATGCAAAGACAATCCTGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR CAA 90 bp TCAACCATAGCTTCCGTAGTTGTCTTTAACACCTCTCTCACCACCTaGGCTGGAATGACGGCTTCACAAACCACAGTCTTTCCTCGTCCT +
Preference number: 2 (lower is better)
Translates to: STIASVVVFNTSLTT*AGMTASQTTVFPRP
Trigger: AGGACGAGGAAAGACTGTGGTTTGTGAAGCCGTCATTCCAGCCAAGGTGGTGAGAGAGGTGTTAAAGACAACTACGGAAGCTATGGTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR-3UTR GCA 90 bp AGAGGTGAGCCCCACACTGATCACCAGTTTCCAGCTTGTGGTAGCTTTCAGAAATCTGAGGAGTCTCTGTaGAAAGAACCTCAGACGTCT +
Preference number: 2 (lower is better)
Translates to: RGEPHTDHQFPACGSFQKSEESL*KEPQTS
Trigger: AGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAGA...TTTCTGAAAGCTACCACAAGCTGGAAACTGGTGATCAGTGTGGGGCTCACCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR-3UTR GCA 90 bp AGAGTTCCCACATCTGAGGAGTCTCTGTGCAAAGAACCTCAGACGTCTCTGAAACACCAGCCATCACAGTaGCACATACAATTCGGGCAA +
Preference number: 2 (lower is better)
Translates to: RVPTSEESLCKEPQTSLKHQPSQ*HIQFGQ
Trigger: TTGCCCGAATTGTATGTGGCACTGTGATGGCTGGTG...TTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAGATGTGGGAACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR CAA 90 bp ATACTGACACAATCACTAAGAGGCTCCCATGCTGCCGCGGCACTCTaGGAATGTCTTTCAGAGTCCATCTTCTACACAAATGTCAGCTTC +
Preference number: 2 (lower is better)
Translates to: ILTQSLRGSHAAAAL*ECLSESIFYTNVSF
Trigger: GAAGCTGACATTTGTGTAGAAGATGGACTCTGAAAGACATTCCAAGAGTGCCGCGGCAGCATGGGAGCCTCTTAGTGATTGTGTCAGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR-3UTR TCA 90 bp AGCTTTCAGAAACGAACTGTAGCTCACATCTGTGGTGCTCAGAGCACCGGTACCAAAGTAATTCTTCCATaGAGAAGTAGGCCCCCAATC +
Preference number: 2 (lower is better)
Translates to: SFQKRTVAHICGAQSTGTKVILP*RSRPPI
Trigger: GATTGGGGGCCTACTTCTTCATGGAAGAATTACTTT...GGTACCGGTGCTCTGAGCACCACAGATGTGAGCTACAGTTCGTTTCTGAAAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR-3UTR TCA 90 bp CTCAATGATAACCTGGCTCCAGCAGTTTGGCCTATGGACATCTCCTCGGGATGTCCTAGATGTGTAAGTTaGAGTAAACCCTCTTTCCCA +
Preference number: 2 (lower is better)
Translates to: LNDNLAPAVWPMDISSGCPRCVS*SKPSFP
Trigger: TGGGAAAGAGGGTTTACTTCAACTTACACATCTAGG...ACATCCCGAGGAGATGTCCATAGGCCAAACTGCTGGAGCCAGGTTATCATTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
3UTR-3UTR GCA 90 bp AGAGTTCCCACATCTGAGGAGTCTCTGTGCAAAGAACCTCAGACGTCTCTGAAATCTGAGGAGTCTCTGTaGAAAGAACCTCAGACGTCT +
Preference number: 2 (lower is better)
Translates to: RVPTSEESLCKEPQTSLKSEESL*KEPQTS
Trigger: AGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAGA...TTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAGATGTGGGAACTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000168855.2
3UTR-3UTR TCA 90 bp ACGGTTCCTATCTCTATCGATGGCATGGTGCAGCTGATATATAAGTCTTCATTTCCACCTTGGCTGGAATaGCGGCTTCACAAACCACAG +
Preference number: 2 (lower is better)
Translates to: TVPISIDGMVQLIYKSSFPPWLE*RLHKPQ
Trigger: CTGTGGTTTGTGAAGCCGTCATTCCAGCCAAGGTGG...AAATGAAGACTTATATATCAGCTGCACCATGCCATCGATAGAGATAGGAACCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR-3UTR GCA 90 bp AAACGAACTGTAGCTCACATCTGTGGTGCTCAGAGCACCGGTACCATCCACGTGACTCACAGAGATAAATaGAGTGACTGTTTTCTTCGT +
Preference number: 2 (lower is better)
Translates to: KRTVAHICGAQSTGTIHVTHRDK*SDCFLR
Trigger: ACGAAGAAAACAGTCACTGCATTTATCTCTGTGAGT...CACGTGGATGGTACCGGTGCTCTGAGCACCACAGATGTGAGCTACAGTTCGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR-3UTR CCA 90 bp GTAGAAAGAACAGCTAAAATACAGAATAGAGTGCTGTGCTATACGGGACACATTCCCAGTCCCTGGGCCTaGGCAGTCAAAGAATGTGAG +
Preference number: 2 (lower is better)
Translates to: VERTAKIQNRVLCYTGHIPSPWA*AVKECE
Trigger: CTCACATTCTTTGACTGCCCAGGCCCAGGGACTGGG...AATGTGTCCCGTATAGCACAGCACTCTATTCTGTATTTTAGCTGTTCTTTCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
3UTR-3UTR CCA 90 bp AAAGAACAGCTAAAATACAGAATAGAGTGCTGTGCTATACGGGACACATTAGTAGAAGAACCCAGTCCCTaGGCCTGGGCAGTCAAAGAA +
Preference number: 2 (lower is better)
Translates to: KEQLKYRIECCAIRDTLVEEPSP*AWAVKE
Trigger: TTCTTTGACTGCCCAGGCCCAGGGACTGGGTTCTTC...TACTAATGTGTCCCGTATAGCACAGCACTCTATTCTGTATTTTAGCTGTTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
3UTR-3UTR TCA 90 bp AGTATGATGGTTAAACTTGGTTGTCAACTTGACACTTGTAGGAAGAGGGAATCTCCTCGGGATGTTTCTTaGTTGCAAACTGATGAAGAA +
Preference number: 2 (lower is better)
Translates to: SMMVKLGCQLDTCRKRESPRDVS*LQTDEE
Trigger: TTCTTCATCAGTTTGCAATCAAGAAACATCCCGAGG...AGATTCCCTCTTCCTACAAGTGTCAAGTTGACAACCAAGTTTAACCATCATACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
3UTR CCA 72 bp CCCTTCATTGGGCTTGGAAAGCAAGCCAGGGTTTCCTaGACCAGTGCTAACGAGCACTGTCTTCTCTGGCCC +
Preference number: 3 (lower is better)
Translates to: PFIGLGKQARVS*TSANEHCLLWP
Trigger: GGGCCAGAGAAGACAGTGCTCGTTAGCACTGGTCCAGGAAACCCTGGCTTGCTTTCCAAGCCCAATGAAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR GCA 72 bp GCCACATGCGATGTAGATAGCAGTGACAATGTTTGCTaGGTGGGCGTTGTAGCCGCCTATGCTCCCAGCCAT +
Preference number: 3 (lower is better)
Translates to: ATCDVDSSDNVC*VGVVAAYAPSH
Trigger: ATGGCTGGGAGCATAGGCGGCTACAACGCCCACGCAGCAAACATTGTCACTGCTATCTACATCGCATGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR GCA 72 bp AGGCTGCCATCAAGGACAGCTCACCAGCCATCACAGTaGCACATACAATTCGGGCAAGCTGCCGTGCGTTTT +
Preference number: 3 (lower is better)
Translates to: RLPSRTAHQPSQ*HIQFGQAAVRF
Trigger: AAAACGCACGGCAGCTTGCCCGAATTGTATGTGGCACTGTGATGGCTGGTGAGCTGTCCTTGATGGCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR GCA 72 bp CATGTGACTTCTGACAAGATGTCCTGCTGCCAAGGCTaGCATCAAGGACAGCTCACCAGCCATCACAGTGCC +
Preference number: 3 (lower is better)
Translates to: HVTSDKMSCCQG*HQGQLTSHHSA
Trigger: GGCACTGTGATGGCTGGTGAGCTGTCCTTGATGGCAGCCTTGGCAGCAGGACATCTTGTCAGAAGTCACATG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR CCA 72 bp CTAGCATCTGCAGGCAGGCTTGCTGAGGTAGAAGGTTaGTCCCACCACCCACGGTTCCTATCTCTATCGATG +
Preference number: 3 (lower is better)
Translates to: LASAGRLAEVEG*SHHPRFLSLSM
Trigger: CATCGATAGAGATAGGAACCGTGGGTGGTGGGACCAACCTTCTACCTCAGCAAGCCTGCCTGCAGATGCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR TCA 72 bp ACATCTGTGGTGCTCAGAGCACCGGTACCATCCACGTaGGATCTCTCCAGAACACAGCACGGAAAGAACCAG +
Preference number: 3 (lower is better)
Translates to: TSVVLRAPVPST*DLSRTQHGKNQ
Trigger: CTGGTTCTTTCCGTGCTGTGTTCTGGAGAGATCTCACGTGGATGGTACCGGTGCTCTGAGCACCACAGATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000168855.2
3UTR TCA 72 bp CTGAGGAGTCTCTGTGCAAAGAACCTCAGACGTCTCTaGAAGCGCCAGAAACCAAGCAGGGGTGTCACTGAT +
Preference number: 3 (lower is better)
Translates to: LRSLCAKNLRRL*KRQKPSRGVTD
Trigger: ATCAGTGACACCCCTGCTTGGTTTCTGGCGCTTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000168855.2
3UTR GCA 72 bp TTGGCCTATGGACATCTCCTCGGGATGTTTCTTGATTaGAAACTGATGAAGAACCCAGTCCCTGGGCCTGGG +
Preference number: 3 (lower is better)
Translates to: LAYGHLLGMFLD*KLMKNPVPGPG
Trigger: CCCAGGCCCAGGGACTGGGTTCTTCATCAGTTTGCAATCAAGAAACATCCCGAGGAGATGTCCATAGGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
3UTR GCA 72 bp CCAGCCATCACAGTGCCACATACAATTCGGGCAAGCTaGCGTGCGTTTTCTCCAGGATTGTCTTTGCATGCT +
Preference number: 3 (lower is better)
Translates to: PAITVPHTIRAS*RAFSPGLSLHA
Trigger: AGCATGCAAAGACAATCCTGGAGAAAACGCACGGCAGCTTGCCCGAATTGTATGTGGCACTGTGATGGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR GCA 72 bp GTTGTGAACCATGTGACTTCTGACAAGATGTCCTGCTaGCAAGGCTGCCATCAAGGACAGCTCACCAGCCAT +
Preference number: 3 (lower is better)
Translates to: VVNHVTSDKMSC*QGCHQGQLTSH
Trigger: ATGGCTGGTGAGCTGTCCTTGATGGCAGCCTTGGCAGCAGGACATCTTGTCAGAAGTCACATGGTTCACAAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR-3UTR CAA 90 bp ACATCTGAGGAGTCTCTGTGCAAAGAACCTCAGACGTCTCTGAAAGCGCCAGAAACCTCTCTCACCACCTaGGCTGGAATGACGGCTTCA +
Preference number: 3 (lower is better)
Translates to: TSEESLCKEPQTSLKAPETSLTT*AGMTAS
Trigger: TGAAGCCGTCATTCCAGCCAAGGTGGTGAGAGAGGT...TTCTGGCGCTTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAGATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR TCA 72 bp CAGTTTGGCCTATGGACATCTCCTCGGGATGTTTCTTaGTTGCAAACTGATGAAGAACCCAGTCCCTGGGCC +
Preference number: 3 (lower is better)
Translates to: QFGLWTSPRDVS*LQTDEEPSPWA
Trigger: GGCCCAGGGACTGGGTTCTTCATCAGTTTGCAATCAAGAAACATCCCGAGGAGATGTCCATAGGCCAAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
3UTR GCA 72 bp CATCACAGTGCCACATACAATTCGGGCAAGCTGCCGTaGGTTTTCTCCAGGATTGTCTTTGCATGCTCCTTG +
Preference number: 3 (lower is better)
Translates to: HHSATYNSGKLP*VFSRIVFACSL
Trigger: CAAGGAGCATGCAAAGACAATCCTGGAGAAAACGCACGGCAGCTTGCCCGAATTGTATGTGGCACTGTGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR-3UTR CAA 90 bp TTGGTCCCACCACCCACGGTTCCTATCTCTATCGATGGCATGGTGCAGCTGATAGAGCCCACAAGATTCTaGTTAATGTTTACGTCAACC +
Preference number: 3 (lower is better)
Translates to: LVPPPTVPISIDGMVQLIEPTRF*LMFTST
Trigger: GGTTGACGTAAACATTAACAAGAATCTTGTGGGCTC...TATCAGCTGCACCATGCCATCGATAGAGATAGGAACCGTGGGTGGTGGGACCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR TCA 72 bp TTGTCTTTAACACCTCTCTCACCACCTTGGCTGGAATaGCGGCTTCACAAACCACAGTCTTTCCTCGTCCTT +
Preference number: 3 (lower is better)
Translates to: LSLTPLSPPWLE*RLHKPQSFLVL
Trigger: AAGGACGAGGAAAGACTGTGGTTTGTGAAGCCGTCATTCCAGCCAAGGTGGTGAGAGAGGTGTTAAAGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR GCA 72 bp CACAATAATACTGACACAATCACTAAGAGGCTCCCATaGTGCCGCGGCACTCTTGGAATGTCTTTCAGAGTC +
Preference number: 3 (lower is better)
Translates to: HNNTDTITKRLP*CRGTLGMSFRV
Trigger: GACTCTGAAAGACATTCCAAGAGTGCCGCGGCAGCATGGGAGCCTCTTAGTGATTGTGTCAGTATTATTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR CCA 72 bp AAACCACAGTCTTTCCTCGTCCTTCGATCCAATTTATaGCAGCAGGCTTCTTGTCGGTGCAATAGTTCCCAC +
Preference number: 3 (lower is better)
Translates to: KPQSFLVLRSNL*QQASCRCNSSH
Trigger: GTGGGAACTATTGCACCGACAAGAAGCCTGCTGCCATAAATTGGATCGAAGGACGAGGAAAGACTGTGGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR TCA 72 bp AAGAGCTTTTATGGGCCCATTAAAGGAGCCCATAAATaGTTCAGTCACCAAACTCCTGGCCACAGGAACAAG +
Preference number: 3 (lower is better)
Translates to: KSFYGPIKGAHK*FSHQTPGHRNK
Trigger: CTTGTTCCTGTGGCCAGGAGTTTGGTGACTGAATCATTTATGGGCTCCTTTAATGGGCCCATAAAAGCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR TCA 72 bp AATTTATCTTTGATCTGTTGTGAACCATGTGACTTCTaGCAAGATGTCCTGCTGCCAAGGCTGCCATCAAGG +
Preference number: 3 (lower is better)
Translates to: NLSLICCEPCDF*QDVLLPRLPSR
Trigger: CCTTGATGGCAGCCTTGGCAGCAGGACATCTTGTCAGAAGTCACATGGTTCACAACAGATCAAAGATAAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
3UTR TCA 72 bp TTGAGATTTTTAATTCACAGATTGCATGTTAGTCCTTaGGAACCCAATGCCCGCGCTTCAGTTCAGTGTCAG +
Preference number: 3 (lower is better)
Translates to: LRFLIHRLHVSP*EPNARASVQCQ
Trigger: CTGACACTGAACTGAAGCGCGGGCATTGGGTTCTCAAGGACTAACATGCAATCTGTGAATTAAAAATCTCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000168855.2
ENSMUST00000169945.8
3UTR GCA 72 bp GTAGAAAGAACAGCTAAAATACAGAATAGAGTGCTGTaGTATACGGGACACATTAGTATGATGGTTAAACTT +
Preference number: 3 (lower is better)
Translates to: VERTAKIQNRVL*YTGHISMMVKL
Trigger: AAGTTTAACCATCATACTAATGTGTCCCGTATAGCACAGCACTCTATTCTGTATTTTAGCTGTTCTTTCTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp GATGAAGAACCCAGTCCCTGGGCCTGGGCAGTCAAAGAATGTGAGCTGAACATGTCGAGTCATCCCATCTaGAAGGACCCGGCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: DEEPSPWAWAVKECELNMSSHPI*KDPAAG
Trigger: GCCAGCAGCCGGGTCCTTGCAGATGGGATGACTCGA...CATGTTCAGCTCACATTCTTTGACTGCCCAGGCCCAGGGACTGGGTTCTTCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp ACTGTAGCTCACATCTGTGGTGCTCAGAGCACCGGTACCATCCACGTGAGATCTTGCAGGCAGGCTTGCTaGGGTAGAAGGTTGGTCCCA +
Preference number: 4 (lower is better)
Translates to: TVAHICGAQSTGTIHVRSCRQAC*GRRLVP
Trigger: TGGGACCAACCTTCTACCTCAGCAAGCCTGCCTGCA...AGATCTCACGTGGATGGTACCGGTGCTCTGAGCACCACAGATGTGAGCTACAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp ACGAACTGTAGCTCACATCTGTGGTGCTCAGAGCACCGGTACCATCCACGTGAGCCCCACATTCTGTGCTaGATCCTGGCCACATGCGAT +
Preference number: 4 (lower is better)
Translates to: TNCSSHLWCSEHRYHPREPHILC*ILATCD
Trigger: ATCGCATGTGGCCAGGATGCAGCACAGAATGTGGGG...CTCACGTGGATGGTACCGGTGCTCTGAGCACCACAGATGTGAGCTACAGTTCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp ACATCTGAGGAGTCTCTGTGCAAAGAACCTCAGACGTCTCTGAAAGCGCCAGAACAGCTGGCGGACGCCTaGCATGGTGCCAACTCCAAT +
Preference number: 4 (lower is better)
Translates to: TSEESLCKEPQTSLKAPEQLADA*HGANSN
Trigger: ATTGGAGTTGGCACCATGTCAGGCGTCCGCCAGCTG...TTCTGGCGCTTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAGATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp ACTGATGAAGAACCCAGTCCCTGGGCCTGGGCAGTCAAAGAATGTGAGCTGAACTGGCGTCCCCCGTCCTaGACTGGAAACGGATATAGA +
Preference number: 4 (lower is better)
Translates to: TDEEPSPWAWAVKECELNWRPPS*TGNGYR
Trigger: TCTATATCCGTTTCCAGTCCAGGACGGGGGACGCCA...GTTCAGCTCACATTCTTTGACTGCCCAGGCCCAGGGACTGGGTTCTTCATCAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp CAGTTTCCAGCTTGTGGTAGCTTTCAGAAACGAACTGTAGCTCACATCTGTGGTAGCCGAAGCAGCACATaGTCTCCAGCTGGCGGACGC +
Preference number: 4 (lower is better)
Translates to: QFPACGSFQKRTVAHICGSRSST*SPAGGR
Trigger: GCGTCCGCCAGCTGGAGATCATGTGCTGCTTCGGCT...ACCACAGATGTGAGCTACAGTTCGTTTCTGAAAGCTACCACAAGCTGGAAACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp GATTGCATGTTAGTCCTTGAGAACCCAATGCCCGCGCTTCAGTTCAGTGTCAGGCCACCTTGGCTGGAATaGCGGCTTCACAAACCACAG +
Preference number: 4 (lower is better)
Translates to: DCMLVLENPMPALQFSVRPPWLE*RLHKPQ
Trigger: CTGTGGTTTGTGAAGCCGTCATTCCAGCCAAGGTGG...CCTGACACTGAACTGAAGCGCGGGCATTGGGTTCTCAAGGACTAACATGCAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR TCA 90 bp GCCTGGGCAGTCAAAGAATGTGAGCTGAACATGAGGCTAGAACCAGCCAATATGTGCAGGCAGGCTTGCTaGGGTAGAAGGTTGGTCCCA +
Preference number: 4 (lower is better)
Translates to: AWAVKECELNMRLEPANMCRQAC*GRRLVP
Trigger: TGGGACCAACCTTCTACCTCAGCAAGCCTGCCTGCA...CATATTGGCTGGTTCTAGCCTCATGTTCAGCTCACATTCTTTGACTGCCCAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp CTCAATGATAACCTGGCTCCAGCAGTTTGGCCTATGGACATCTCCTCGGGATGTGGCGGACGCCTGACATaGTGCCAACTCCAATCACAA +
Preference number: 4 (lower is better)
Translates to: LNDNLAPAVWPMDISSGCGGRLT*CQLQSQ
Trigger: TTGTGATTGGAGTTGGCACCATGTCAGGCGTCCGCC...ACATCCCGAGGAGATGTCCATAGGCCAAACTGCTGGAGCCAGGTTATCATTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp CTTGATTGCAAACTGATGAAGAACCCAGTCCCTGGGCCTGGGCAGTCAAAGAATGCTGAGGTAGAAGGTTaGTCCCACCACCCACGGTTC +
Preference number: 4 (lower is better)
Translates to: LDCKLMKNPVPGPGQSKNAEVEG*SHHPRF
Trigger: GAACCGTGGGTGGTGGGACCAACCTTCTACCTCAGC...ATTCTTTGACTGCCCAGGCCCAGGGACTGGGTTCTTCATCAGTTTGCAATCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp AGCTTTCAGAAACGAACTGTAGCTCACATCTGTGGTGCTCAGAGCACCGGTACCCTCTGGCAAAATGGCTaGGCTGCCAAATTGGACGAC +
Preference number: 4 (lower is better)
Translates to: SFQKRTVAHICGAQSTGTLWQNG*AAKLDD
Trigger: GTCGTCCAATTTGGCAGCTCAGCCATTTTGCCAGAG...GGTACCGGTGCTCTGAGCACCACAGATGTGAGCTACAGTTCGTTTCTGAAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp CTTGATTGCAAACTGATGAAGAACCCAGTCCCTGGGCCTGGGCAGTCAAAGAATCCACCTTGGCTGGAATaGCGGCTTCACAAACCACAG +
Preference number: 4 (lower is better)
Translates to: LDCKLMKNPVPGPGQSKNPPWLE*RLHKPQ
Trigger: CTGTGGTTTGTGAAGCCGTCATTCCAGCCAAGGTGG...ATTCTTTGACTGCCCAGGCCCAGGGACTGGGTTCTTCATCAGTTTGCAATCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp GATTGCATGTTAGTCCTTGAGAACCCAATGCCCGCGCTTCAGTTCAGTGTCAGGGCCACGAAGAGGCCATaGATCCGGAAAAGTCTTGAC +
Preference number: 4 (lower is better)
Translates to: DCMLVLENPMPALQFSVRATKRP*IRKSLD
Trigger: GTCAAGACTTTTCCGGATGCATGGCCTCTTCGTGGC...CCTGACACTGAACTGAAGCGCGGGCATTGGGTTCTCAAGGACTAACATGCAATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000168855.2
CDS-3UTR GCA 90 bp CTGGCCACATGCGATGTAGATAGCAGTGACAATGTTTGCTGCGTGGGCGTTGTAGCCACGAAGAGGCCATaGATCCGGAAAAGTCTTGAC +
Preference number: 4 (lower is better)
Translates to: LATCDVDSSDNVCCVGVVATKRP*IRKSLD
Trigger: GTCAAGACTTTTCCGGATGCATGGCCTCTTCGTGGC...TACAACGCCCACGCAGCAAACATTGTCACTGCTATCTACATCGCATGTGGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
CDS-3UTR GCA 90 bp GATGAAGAACCCAGTCCCTGGGCCTGGGCAGTCAAAGAATGTGAGCTGAACATGGCAAAATGGCTGAGCTaGCAAATTGGACGACCCTCA +
Preference number: 4 (lower is better)
Translates to: DEEPSPWAWAVKECELNMAKWLS*QIGRPS
Trigger: TGAGGGTCGTCCAATTTGGCAGCTCAGCCATTTTGC...CATGTTCAGCTCACATTCTTTGACTGCCCAGGCCCAGGGACTGGGTTCTTCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp CAGTTTCCAGCTTGTGGTAGCTTTCAGAAACGAACTGTAGCTCACATCTGTGGTTCGAGTCATCCCATCTaGAAGGACCCGGCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: QFPACGSFQKRTVAHICGSSHPI*KDPAAG
Trigger: GCCAGCAGCCGGGTCCTTGCAGATGGGATGACTCGA...ACCACAGATGTGAGCTACAGTTCGTTTCTGAAAGCTACCACAAGCTGGAAACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp GAATGTGAGCTGAACATGAGGCTAGAACCAGCCAATATGCAGTGCTCCTCCATGAGTGACAATGTTTGCTaGGTGGGCGTTGTAGCCGCC +
Preference number: 4 (lower is better)
Translates to: ECELNMRLEPANMQCSSMSDNVC*VGVVAA
Trigger: GGCGGCTACAACGCCCACGCAGCAAACATTGTCACT...CATGGAGGAGCACTGCATATTGGCTGGTTCTAGCCTCATGTTCAGCTCACATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp ACGAACTGTAGCTCACATCTGTGGTGCTCAGAGCACCGGTACCATCCACGTGAGCCACTCCAACAGGGATaGGCATATATCCGATCACAT +
Preference number: 4 (lower is better)
Translates to: TNCSSHLWCSEHRYHPREPLQQG*AYIRSH
Trigger: ATGTGATCGGATATATGCCCATCCCTGTTGGAGTGG...CTCACGTGGATGGTACCGGTGCTCTGAGCACCACAGATGTGAGCTACAGTTCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp CAGTTTCCAGCTTGTGGTAGCTTTCAGAAACGAACTGTAGCTCACATCTGTGGTCAAGGACCCGGCTGCTaGCACCTCCACCAAGGCTTA +
Preference number: 4 (lower is better)
Translates to: QFPACGSFQKRTVAHICGQGPGC*HLHQGL
Trigger: TAAGCCTTGGTGGAGGTGCCAGCAGCCGGGTCCTTG...ACCACAGATGTGAGCTACAGTTCGTTTCTGAAAGCTACCACAAGCTGGAAACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp AAACGAACTGTAGCTCACATCTGTGGTGCTCAGAGCACCGGTACCATCCACGTGTGCAATAGTTCCCACTaGCTGCCAGAATCTGCATGT +
Preference number: 4 (lower is better)
Translates to: KRTVAHICGAQSTGTIHVCNSSH*LPESAC
Trigger: ACATGCAGATTCTGGCAGTCAGTGGGAACTATTGCA...CACGTGGATGGTACCGGTGCTCTGAGCACCACAGATGTGAGCTACAGTTCGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp GGTCCCACCACCCACGGTTCCTATCTCTATCGATGGCATGGTGCAGCTGATATATTTCTCCGTACCCGGTaGACATGTTCATGGACATCA +
Preference number: 4 (lower is better)
Translates to: GPTTHGSYLYRWHGAADIFLRTR*TCSWTS
Trigger: TGATGTCCATGAACATGTTCACCGGGTACGGAGAAA...TATATCAGCTGCACCATGCCATCGATAGAGATAGGAACCGTGGGTGGTGGGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
CDS-3UTR GCA 90 bp TGGGCCTGGGCAGTCAAAGAATGTGAGCTGAACATGAGGCTAGAACCAGCCAATTGTGGGGCCCAGGATTaGCATTCCACGAGCTATATT +
Preference number: 4 (lower is better)
Translates to: WAWAVKECELNMRLEPANCGAQD*HSTSYI
Trigger: AATATAGCTCGTGGAATGGCAATCCTGGGCCCCACA...ATTGGCTGGTTCTAGCCTCATGTTCAGCTCACATTCTTTGACTGCCCAGGCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp GCAGTCAAAGAATGTGAGCTGAACATGAGGCTAGAACCAGCCAATATGCAGTGCGGACGCCTGACATGGTaGCAACTCCAATCACAAGGC +
Preference number: 4 (lower is better)
Translates to: AVKECELNMRLEPANMQCGRLTW*QLQSQG
Trigger: GCCTTGTGATTGGAGTTGGCACCATGTCAGGCGTCC...GCACTGCATATTGGCTGGTTCTAGCCTCATGTTCAGCTCACATTCTTTGACTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp GCAGTCAAAGAATGTGAGCTGAACATGAGGCTAGAACCAGCCAATATGCAGTGCCCCCACATTCTGTGCTaGATCCTGGCCACATGCGAT +
Preference number: 4 (lower is better)
Translates to: AVKECELNMRLEPANMQCPHILC*ILATCD
Trigger: ATCGCATGTGGCCAGGATGCAGCACAGAATGTGGGG...GCACTGCATATTGGCTGGTTCTAGCCTCATGTTCAGCTCACATTCTTTGACTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp GATTGCATGTTAGTCCTTGAGAACCCAATGCCCGCGCTTCAGTTCAGTGTCAGGCACCAGCCATCACAGTaGCACATACAATTCGGGCAA +
Preference number: 4 (lower is better)
Translates to: DCMLVLENPMPALQFSVRHQPSQ*HIQFGQ
Trigger: TTGCCCGAATTGTATGTGGCACTGTGATGGCTGGTG...CCTGACACTGAACTGAAGCGCGGGCATTGGGTTCTCAAGGACTAACATGCAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR CCA 90 bp CAGTTTCCAGCTTGTGGTAGCTTTCAGAAACGAACTGTAGCTCACATCTGTGGTTGGAAGACGCACCACTaGGCCTCGAGTCATCCCATC +
Preference number: 4 (lower is better)
Translates to: QFPACGSFQKRTVAHICGWKTHH*ASSHPI
Trigger: GATGGGATGACTCGAGGCCCAGTGGTGCGTCTTCCA...ACCACAGATGTGAGCTACAGTTCGTTTCTGAAAGCTACCACAAGCTGGAAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp CAGTTTCCAGCTTGTGGTAGCTTTCAGAAACGAACTGTAGCTCACATCTGTGGTAGAGTCACAAGCACGTaGAAGACGCACCACTGGGCC +
Preference number: 4 (lower is better)
Translates to: QFPACGSFQKRTVAHICGRVTST*KTHHWA
Trigger: GGCCCAGTGGTGCGTCTTCCACGTGCTTGTGACTCT...ACCACAGATGTGAGCTACAGTTCGTTTCTGAAAGCTACCACAAGCTGGAAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp CTCAATGATAACCTGGCTCCAGCAGTTTGGCCTATGGACATCTCCTCGGGATGTGACGAGCAAATCTGCTaGTGCTATCAAAGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: LNDNLAPAVWPMDISSGCDEQIC*CYQRPP
Trigger: AGGAGGCCTTTGATAGCACCAGCAGATTTGCTCGTC...ACATCCCGAGGAGATGTCCATAGGCCAAACTGCTGGAGCCAGGTTATCATTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp ACTGTAGCTCACATCTGTGGTGCTCAGAGCACCGGTACCATCCACGTGAGATCTTCTTGTTGTTGCCGGTaGACATGTTCATGGACATCA +
Preference number: 4 (lower is better)
Translates to: TVAHICGAQSTGTIHVRSSCCCR*TCSWTS
Trigger: TGATGTCCATGAACATGTTCACCGGCAACAACAAGA...AGATCTCACGTGGATGGTACCGGTGCTCTGAGCACCACAGATGTGAGCTACAGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp AGCTTTCAGAAACGAACTGTAGCTCACATCTGTGGTGCTCAGAGCACCGGTACCCCGGGAAGAATGTCATaGACACAAAGTAGTTGGCCA +
Preference number: 4 (lower is better)
Translates to: SFQKRTVAHICGAQSTGTPGRMS*TQSSWP
Trigger: TGGCCAACTACTTTGTGTTCATGACATTCTTCCCGG...GGTACCGGTGCTCTGAGCACCACAGATGTGAGCTACAGTTCGTTTCTGAAAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp ACGAACTGTAGCTCACATCTGTGGTGCTCAGAGCACCGGTACCATCCACGTGAGGCTCAATGTCCATGCTaGTCATCTTGGAGAGATAAA +
Preference number: 4 (lower is better)
Translates to: TNCSSHLWCSEHRYHPREAQCPC*SSWRDK
Trigger: TTTATCTCTCCAAGATGATCAGCATGGACATTGAGC...CTCACGTGGATGGTACCGGTGCTCTGAGCACCACAGATGTGAGCTACAGTTCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp CTCAATGATAACCTGGCTCCAGCAGTTTGGCCTATGGACATCTCCTCGGGATGTTCAGGAAAGAACTCCTaGAGCTTCAGCAGTGCTTTC +
Preference number: 4 (lower is better)
Translates to: LNDNLAPAVWPMDISSGCSGKNS*SFSSAF
Trigger: GAAAGCACTGCTGAAGCTTCAGGAGTTCTTTCCTGA...ACATCCCGAGGAGATGTCCATAGGCCAAACTGCTGGAGCCAGGTTATCATTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp GATTGCATGTTAGTCCTTGAGAACCCAATGCCCGCGCTTCAGTTCAGTGTCAGGTGCAATAGTTCCCACTaGCTGCCAGAATCTGCATGT +
Preference number: 4 (lower is better)
Translates to: DCMLVLENPMPALQFSVRCNSSH*LPESAC
Trigger: ACATGCAGATTCTGGCAGTCAGTGGGAACTATTGCA...CCTGACACTGAACTGAAGCGCGGGCATTGGGTTCTCAAGGACTAACATGCAATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR TCA 90 bp AGAGGTGAGCCCCACACTGATCACCAGTTTCCAGCTTGTGGTAGCTTTCAGAAAGAACCATGTGACTTCTaGCAAGATGTCCTGCTGCCA +
Preference number: 4 (lower is better)
Translates to: RGEPHTDHQFPACGSFQKEPCDF*QDVLLP
Trigger: TGGCAGCAGGACATCTTGTCAGAAGTCACATGGTTC...TTTCTGAAAGCTACCACAAGCTGGAAACTGGTGATCAGTGTGGGGCTCACCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp ACTGATGAAGAACCCAGTCCCTGGGCCTGGGCAGTCAAAGAATGTGAGCTGAACCTCAGGGTAATCACTTaGTCAATGTCCATGCTGATC +
Preference number: 4 (lower is better)
Translates to: TDEEPSPWAWAVKECELNLRVIT*SMSMLI
Trigger: GATCAGCATGGACATTGAGCAAGTGATTACCCTGAG...GTTCAGCTCACATTCTTTGACTGCCCAGGCCCAGGGACTGGGTTCTTCATCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp ATGATGGTTAAACTTGGTTGTCAACTTGACACTTGTAGGAAGAGGGAATCTCAACTGCAAGGACCCGGCTaGTGGCACCTCCACCAAGGC +
Preference number: 4 (lower is better)
Translates to: MMVKLGCQLDTCRKRESQLQGPG*WHLHQG
Trigger: GCCTTGGTGGAGGTGCCAGCAGCCGGGTCCTTGCAG...TTGAGATTCCCTCTTCCTACAAGTGTCAAGTTGACAACCAAGTTTAACCATCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp GCCTGGGCAGTCAAAGAATGTGAGCTGAACATGAGGCTAGAACCAGCCAATATGCCAGGTCTTTACTTCTaGAGAGTCACAAGCACGTGG +
Preference number: 4 (lower is better)
Translates to: AWAVKECELNMRLEPANMPGLYF*RVTSTW
Trigger: CCACGTGCTTGTGACTCTGCAGAAGTAAAGACCTGG...CATATTGGCTGGTTCTAGCCTCATGTTCAGCTCACATTCTTTGACTGCCCAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp TGCATGTTAGTCCTTGAGAACCCAATGCCCGCGCTTCAGTTCAGTGTCAGGATCGGCCTCCTTTATCACTaGAAACCCTTCAGGTGTTTC +
Preference number: 4 (lower is better)
Translates to: CMLVLENPMPALQFSVRIGLLYH*KPFRCF
Trigger: GAAACACCTGAAGGGTTTGCAGTGATAAAGGAGGCC...GATCCTGACACTGAACTGAAGCGCGGGCATTGGGTTCTCAAGGACTAACATGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp GAGTCTCTGTGCAAAGAACCTCAGACGTCTCTGAAAGCGCCAGAAACCAAGCAGCTGAAGCTTCAGCAGTaGTTTCTCCGTACCCTTAGA +
Preference number: 4 (lower is better)
Translates to: ESLCKEPQTSLKAPETKQLKLQQ*FLRTLR
Trigger: TCTAAGGGTACGGAGAAAGCACTGCTGAAGCTTCAG...CTGCTTGGTTTCTGGCGCTTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp CAGTTTCCAGCTTGTGGTAGCTTTCAGAAACGAACTGTAGCTCACATCTGTGGTAGTGACAATGTTTGCTaGGTGGGCGTTGTAGCCGCC +
Preference number: 4 (lower is better)
Translates to: QFPACGSFQKRTVAHICGSDNVC*VGVVAA
Trigger: GGCGGCTACAACGCCCACGCAGCAAACATTGTCACT...ACCACAGATGTGAGCTACAGTTCGTTTCTGAAAGCTACCACAAGCTGGAAACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp GCAGTCAAAGAATGTGAGCTGAACATGAGGCTAGAACCAGCCAATATGCAGTGCAGCAGTGACAATGTTTaGTGCGTGGGCGTTGTAGCC +
Preference number: 4 (lower is better)
Translates to: AVKECELNMRLEPANMQCSSDNV*CVGVVA
Trigger: GGCTACAACGCCCACGCAGCAAACATTGTCACTGCT...GCACTGCATATTGGCTGGTTCTAGCCTCATGTTCAGCTCACATTCTTTGACTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp ACATCTGAGGAGTCTCTGTGCAAAGAACCTCAGACGTCTCTGAAAGCGCCAGAATGCATCCTGGCCACATaGGATGTAGATAGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: TSEESLCKEPQTSLKAPECILAT*DVDSSD
Trigger: GTCACTGCTATCTACATCGCATGTGGCCAGGATGCA...TTCTGGCGCTTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAGATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp ACTGTAGCTCACATCTGTGGTGCTCAGAGCACCGGTACCATCCACGTGAGATCTCTCCAGGATTGTCTTTaGATGCTCCTTGAACACCTA +
Preference number: 4 (lower is better)
Translates to: TVAHICGAQSTGTIHVRSLQDCL*MLLEHL
Trigger: TAGGTGTTCAAGGAGCATGCAAAGACAATCCTGGAG...AGATCTCACGTGGATGGTACCGGTGCTCTGAGCACCACAGATGTGAGCTACAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp CAGTTTCCAGCTTGTGGTAGCTTTCAGAAACGAACTGTAGCTCACATCTGTGGTTCGGGCAAGCTGCCGTaGGTTTTCTCCAGGATTGTC +
Preference number: 4 (lower is better)
Translates to: QFPACGSFQKRTVAHICGSGKLP*VFSRIV
Trigger: GACAATCCTGGAGAAAACGCACGGCAGCTTGCCCGA...ACCACAGATGTGAGCTACAGTTCGTTTCTGAAAGCTACCACAAGCTGGAAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp CTGCCGCGGCACTCTTGGAATGTCTTTCAGAGTCCATCTTCTACACAAATGTCAACAATTCGGGCAAGCTaGCGTGCGTTTTCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: LPRHSWNVFQSPSSTQMSTIRAS*RAFSPG
Trigger: TCCTGGAGAAAACGCACGGCAGCTTGCCCGAATTGT...TGACATTTGTGTAGAAGATGGACTCTGAAAGACATTCCAAGAGTGCCGCGGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp GAGTCTCTGTGCAAAGAACCTCAGACGTCTCTGAAAGCGCCAGAAACCAAGCAGAGCTTGAGAAAATTGTaGAGAGGCCAGCAATACCCA +
Preference number: 4 (lower is better)
Translates to: ESLCKEPQTSLKAPETKQSLRKL*RGQQYP
Trigger: TGGGTATTGCTGGCCTCTTCACAATTTTCTCAAGCT...CTGCTTGGTTTCTGGCGCTTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp AATAGAGTGCTGTGCTATACGGGACACATTAGTATGATGGTTAAACTTGGTTGTAGCCGAAGCAGCACATaGTCTCCAGCTGGCGGACGC +
Preference number: 4 (lower is better)
Translates to: NRVLCYTGHISMMVKLGCSRSST*SPAGGR
Trigger: GCGTCCGCCAGCTGGAGATCATGTGCTGCTTCGGCT...ACAACCAAGTTTAACCATCATACTAATGTGTCCCGTATAGCACAGCACTCTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp GTCCTTCGATCCAATTTATGGCAGCAGGCTTCTTGTCGGTGCAATAGTTCCCACTCAGGAAAGAACTCCTaGAGCTTCAGCAGTGCTTTC +
Preference number: 4 (lower is better)
Translates to: VLRSNLWQQASCRCNSSHSGKNS*SFSSAF
Trigger: GAAAGCACTGCTGAAGCTTCAGGAGTTCTTTCCTGA...GTGGGAACTATTGCACCGACAAGAAGCCTGCTGCCATAAATTGGATCGAAGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
CDS-3UTR GCA 90 bp AGAGTTCCCACATCTGAGGAGTCTCTGTGCAAAGAACCTCAGACGTCTCTGAAATGTGGGGCCCAGGATTaGCATTCCACGAGCTATATT +
Preference number: 4 (lower is better)
Translates to: RVPTSEESLCKEPQTSLKCGAQD*HSTSYI
Trigger: AATATAGCTCGTGGAATGGCAATCCTGGGCCCCACA...TTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAGATGTGGGAACTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp AATAGAGTGCTGTGCTATACGGGACACATTAGTATGATGGTTAAACTTGGTTGTCAGGCACAGAGGCCCTaGCACTCCAACAGGGATGGG +
Preference number: 4 (lower is better)
Translates to: NRVLCYTGHISMMVKLGCQAQRP*HSNRDG
Trigger: CCCATCCCTGTTGGAGTGGCAGGGCCTCTGTGCCTG...ACAACCAAGTTTAACCATCATACTAATGTGTCCCGTATAGCACAGCACTCTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp ATCTCAATGATAACCTGGCTCCAGCAGTTTGGCCTATGGACATCTCCTCGGGATGTAGACGAGCAAATCTaGTGGTGCTATCAAAGGCCT +
Preference number: 4 (lower is better)
Translates to: ISMITWLQQFGLWTSPRDVDEQI*WCYQRP
Trigger: AGGCCTTTGATAGCACCAGCAGATTTGCTCGTCTAC...ATCCCGAGGAGATGTCCATAGGCCAAACTGCTGGAGCCAGGTTATCATTGAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp AGGCTAGACTGGCTGAAAGCAAGGGTAGAAAGAACAGCTAAAATACAGAATAGACAAGGACCCGGCTGCTaGCACCTCCACCAAGGCTTA +
Preference number: 4 (lower is better)
Translates to: RLDWLKARVERTAKIQNRQGPGC*HLHQGL
Trigger: TAAGCCTTGGTGGAGGTGCCAGCAGCCGGGTCCTTG...TCTATTCTGTATTTTAGCTGTTCTTTCTACCCTTGCTTTCAGCCAGTCTAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp CTGCCGCGGCACTCTTGGAATGTCTTTCAGAGTCCATCTTCTACACAAATGTCATCTCACCACCTTGGCTaGAATGACGGCTTCACAAAC +
Preference number: 4 (lower is better)
Translates to: LPRHSWNVFQSPSSTQMSSHHLG*NDGFTN
Trigger: GTTTGTGAAGCCGTCATTCCAGCCAAGGTGGTGAGA...TGACATTTGTGTAGAAGATGGACTCTGAAAGACATTCCAAGAGTGCCGCGGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR CAA 72 bp CAATCACTAAGAGGCTCCCATGCTGCCGCGGCACTCTaGGAATGTCTTTCAGAGTCCATCTTCTACACAAAT +
Preference number: 4 (lower is better)
Translates to: QSLRGSHAAAAL*ECLSESIFYTN
Trigger: ATTTGTGTAGAAGATGGACTCTGAAAGACATTCCAAGAGTGCCGCGGCAGCATGGGAGCCTCTTAGTGATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR CAA 72 bp GCTTCCGTAGTTGTCTTTAACACCTCTCTCACCACCTaGGCTGGAATGACGGCTTCACAAACCACAGTCTTT +
Preference number: 4 (lower is better)
Translates to: ASVVVFNTSLTT*AGMTASQTTVF
Trigger: AAAGACTGTGGTTTGTGAAGCCGTCATTCCAGCCAAGGTGGTGAGAGAGGTGTTAAAGACAACTACGGAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168855.2
CDS-3UTR TCA 90 bp TGCATGTTAGTCCTTGAGAACCCAATGCCCGCGCTTCAGTTCAGTGTCAGGATCTCTTTGTCGAGGAAATaGATGACGACTGTACTGAAG +
Preference number: 4 (lower is better)
Translates to: CMLVLENPMPALQFSVRISLSRK*MTTVLK
Trigger: CTTCAGTACAGTCGTCATTCATTTCCTCGACAAAGA...GATCCTGACACTGAACTGAAGCGCGGGCATTGGGTTCTCAAGGACTAACATGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp GTAGAAAGAACAGCTAAAATACAGAATAGAGTGCTGTGCTATACGGGACACATTCAGCTGGCGGACGCCTaGCATGGTGCCAACTCCAAT +
Preference number: 4 (lower is better)
Translates to: VERTAKIQNRVLCYTGHIQLADA*HGANSN
Trigger: ATTGGAGTTGGCACCATGTCAGGCGTCCGCCAGCTG...AATGTGTCCCGTATAGCACAGCACTCTATTCTGTATTTTAGCTGTTCTTTCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp GATGAAGAACCCAGTCCCTGGGCCTGGGCAGTCAAAGAATGTGAGCTGAACATGATGGCATGGTGCAGCTaGTATATAAGTCTTCATTTG +
Preference number: 4 (lower is better)
Translates to: DEEPSPWAWAVKECELNMMAWCS*YISLHL
Trigger: CAAATGAAGACTTATATATCAGCTGCACCATGCCAT...CATGTTCAGCTCACATTCTTTGACTGCCCAGGCCCAGGGACTGGGTTCTTCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp ACATCTGAGGAGTCTCTGTGCAAAGAACCTCAGACGTCTCTGAAAGCGCCAGAACTTTGCACCTTTCTCTaGATTCTCCAGTATCTGCAG +
Preference number: 4 (lower is better)
Translates to: TSEESLCKEPQTSLKAPELCTFL*ILQYLQ
Trigger: CTGCAGATACTGGAGAATGCAGAGAAAGGTGCAAAG...TTCTGGCGCTTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAGATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp CATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTTAGTCTGCAAGGACCCGGCTaGTGGCACCTCCACCAAGGC +
Preference number: 4 (lower is better)
Translates to: HLPLDSALRFLIHRLHVSLQGPG*WHLHQG
Trigger: GCCTTGGTGGAGGTGCCAGCAGCCGGGTCCTTGCAG...ACTAACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp GCACTCTTGGAATGTCTTTCAGAGTCCATCTTCTACACAAATGTCAGCTTCCCAGACAAGATGTCCTGCTaGCAAGGCTGCCATCAAGGA +
Preference number: 4 (lower is better)
Translates to: ALLECLSESIFYTNVSFPDKMSC*QGCHQG
Trigger: TCCTTGATGGCAGCCTTGGCAGCAGGACATCTTGTC...TGGGAAGCTGACATTTGTGTAGAAGATGGACTCTGAAAGACATTCCAAGAGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp CTCAATGATAACCTGGCTCCAGCAGTTTGGCCTATGGACATCTCCTCGGGATGTTTGGTTCAATTCTCTTaGACACATCTTCGTCCAGAC +
Preference number: 4 (lower is better)
Translates to: LNDNLAPAVWPMDISSGCLVQFS*THLRPD
Trigger: GTCTGGACGAAGATGTGTCCAAGAGAATTGAACCAA...ACATCCCGAGGAGATGTCCATAGGCCAAACTGCTGGAGCCAGGTTATCATTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp GATTGCATGTTAGTCCTTGAGAACCCAATGCCCGCGCTTCAGTTCAGTGTCAGGCCAGAGAGAAACACTTaGTTCAATTCTCTTGGACAC +
Preference number: 4 (lower is better)
Translates to: DCMLVLENPMPALQFSVRPERNT*FNSLGH
Trigger: GTGTCCAAGAGAATTGAACCAAGTGTTTCTCTCTGG...CCTGACACTGAACTGAAGCGCGGGCATTGGGTTCTCAAGGACTAACATGCAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp CTGCCGCGGCACTCTTGGAATGTCTTTCAGAGTCCATCTTCTACACAAATGTCATCAACTTTTCTCTCTTaGTTCGCTCCTGGATCCTCC +
Preference number: 4 (lower is better)
Translates to: LPRHSWNVFQSPSSTQMSSTFLS*FAPGSS
Trigger: GGAGGATCCAGGAGCGAACCAAGAGAGAAAAGTTGA...TGACATTTGTGTAGAAGATGGACTCTGAAAGACATTCCAAGAGTGCCGCGGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp AAACGAACTGTAGCTCACATCTGTGGTGCTCAGAGCACCGGTACCATCCACGTGTTCCAATTTGTAAGCTaGGATATGCTTGGCATTGAC +
Preference number: 4 (lower is better)
Translates to: KRTVAHICGAQSTGTIHVFQFVS*DMLGID
Trigger: GTCAATGCCAAGCATATCCCAGCTTACAAATTGGAA...CACGTGGATGGTACCGGTGCTCTGAGCACCACAGATGTGAGCTACAGTTCGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp ACTGATGAAGAACCCAGTCCCTGGGCCTGGGCAGTCAAAGAATGTGAGCTGAACTTCCAATTTGTAAGCTaGGATATGCTTGGCATTGAC +
Preference number: 4 (lower is better)
Translates to: TDEEPSPWAWAVKECELNFQFVS*DMLGID
Trigger: GTCAATGCCAAGCATATCCCAGCTTACAAATTGGAA...GTTCAGCTCACATTCTTTGACTGCCCAGGCCCAGGGACTGGGTTCTTCATCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp ACCTTAGTCCCTGCCTTAACTTCCCTTAGTAATGAATGTCTACCTAGATGTGTATGGAAGACGCACCACTaGGCCTCGAGTCATCCCATC +
Preference number: 4 (lower is better)
Translates to: TLVPALTSLSNECLPRCVWKTHH*ASSHPI
Trigger: GATGGGATGACTCGAGGCCCAGTGGTGCGTCTTCCA...TACACATCTAGGTAGACATTCATTACTAAGGGAAGTTAAGGCAGGGACTAAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp CTGCCGCGGCACTCTTGGAATGTCTTTCAGAGTCCATCTTCTACACAAATGTCACTTCGATCCAATTTATaGCAGCAGGCTTCTTGTCGG +
Preference number: 4 (lower is better)
Translates to: LPRHSWNVFQSPSSTQMSLRSNL*QQASCR
Trigger: CCGACAAGAAGCCTGCTGCCATAAATTGGATCGAAG...TGACATTTGTGTAGAAGATGGACTCTGAAAGACATTCCAAGAGTGCCGCGGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp TCCTCCATGGCCTCCACCTTAGTCCCTGCCTTAACTTCCCTTAGTAATGAATGTCTTCGATCCAATTTATaGCAGCAGGCTTCTTGTCGG +
Preference number: 4 (lower is better)
Translates to: SSMASTLVPALTSLSNECLRSNL*QQASCR
Trigger: CCGACAAGAAGCCTGCTGCCATAAATTGGATCGAAG...ACATTCATTACTAAGGGAAGTTAAGGCAGGGACTAAGGTGGAGGCCATGGAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp TCCTCCATGGCCTCCACCTTAGTCCCTGCCTTAACTTCCCTTAGTAATGAATGTAGCTTGAGAAAATTGTaGAGAGGCCAGCAATACCCA +
Preference number: 4 (lower is better)
Translates to: SSMASTLVPALTSLSNECSLRKL*RGQQYP
Trigger: TGGGTATTGCTGGCCTCTTCACAATTTTCTCAAGCT...ACATTCATTACTAAGGGAAGTTAAGGCAGGGACTAAGGTGGAGGCCATGGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp CTTGATTGCAAACTGATGAAGAACCCAGTCCCTGGGCCTGGGCAGTCAAAGAATGCTCAATGTCCATGCTaGTCATCTTGGAGAGATAAA +
Preference number: 4 (lower is better)
Translates to: LDCKLMKNPVPGPGQSKNAQCPC*SSWRDK
Trigger: TTTATCTCTCCAAGATGATCAGCATGGACATTGAGC...ATTCTTTGACTGCCCAGGCCCAGGGACTGGGTTCTTCATCAGTTTGCAATCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp CATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTTAGTCAGGCACAGAGGCCCTaGCACTCCAACAGGGATGGG +
Preference number: 4 (lower is better)
Translates to: HLPLDSALRFLIHRLHVSQAQRP*HSNRDG
Trigger: CCCATCCCTGTTGGAGTGGCAGGGCCTCTGTGCCTG...ACTAACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp AGGCTAGACTGGCTGAAAGCAAGGGTAGAAAGAACAGCTAAAATACAGAATAGACTCTGGCAAAATGGCTaGGCTGCCAAATTGGACGAC +
Preference number: 4 (lower is better)
Translates to: RLDWLKARVERTAKIQNRLWQNG*AAKLDD
Trigger: GTCGTCCAATTTGGCAGCTCAGCCATTTTGCCAGAG...TCTATTCTGTATTTTAGCTGTTCTTTCTACCCTTGCTTTCAGCCAGTCTAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp GATTGCATGTTAGTCCTTGAGAACCCAATGCCCGCGCTTCAGTTCAGTGTCAGGTTGGTGCACGTTCCTTaGAGATCTTGTAAATTTATC +
Preference number: 4 (lower is better)
Translates to: DCMLVLENPMPALQFSVRLVHVP*RSCKFI
Trigger: GATAAATTTACAAGATCTTCAAGGAACGTGCACCAA...CCTGACACTGAACTGAAGCGCGGGCATTGGGTTCTCAAGGACTAACATGCAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR GCA 90 bp ACCTTAGTCCCTGCCTTAACTTCCCTTAGTAATGAATGTCTACCTAGATGTGTAGCCACGAAGAGGCCATaGATCCGGAAAAGTCTTGAC +
Preference number: 4 (lower is better)
Translates to: TLVPALTSLSNECLPRCVATKRP*IRKSLD
Trigger: GTCAAGACTTTTCCGGATGCATGGCCTCTTCGTGGC...TACACATCTAGGTAGACATTCATTACTAAGGGAAGTTAAGGCAGGGACTAAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp CTGCCGCGGCACTCTTGGAATGTCTTTCAGAGTCCATCTTCTACACAAATGTCACAACTGGATGATCTCTaGATCACTAAGGAACTTTGC +
Preference number: 4 (lower is better)
Translates to: LPRHSWNVFQSPSSTQMSQLDDL*ITKELC
Trigger: GCAAAGTTCCTTAGTGATGCAGAGATCATCCAGTTG...TGACATTTGTGTAGAAGATGGACTCTGAAAGACATTCCAAGAGTGCCGCGGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp AGGGTAGAAAGAACAGCTAAAATACAGAATAGAGTGCTGTGCTATACGGGACACTGCATCCTGGCCACATaGGATGTAGATAGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: RVERTAKIQNRVLCYTGHCILAT*DVDSSD
Trigger: GTCACTGCTATCTACATCGCATGTGGCCAGGATGCA...GTGTCCCGTATAGCACAGCACTCTATTCTGTATTTTAGCTGTTCTTTCTACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp AGTATGATGGTTAAACTTGGTTGTCAACTTGACACTTGTAGGAAGAGGGAATCTGCTGAGCTGCCAAATTaGACGACCCTCACGGCTTTC +
Preference number: 4 (lower is better)
Translates to: SMMVKLGCQLDTCRKRESAELPN*TTLTAF
Trigger: GAAAGCCGTGAGGGTCGTCCAATTTGGCAGCTCAGC...AGATTCCCTCTTCCTACAAGTGTCAAGTTGACAACCAAGTTTAACCATCATACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp AAAGAACAGCTAAAATACAGAATAGAGTGCTGTGCTATACGGGACACATTAGTAAGAGTCACAAGCACGTaGAAGACGCACCACTGGGCC +
Preference number: 4 (lower is better)
Translates to: KEQLKYRIECCAIRDTLVRVTST*KTHHWA
Trigger: GGCCCAGTGGTGCGTCTTCCACGTGCTTGTGACTCT...TACTAATGTGTCCCGTATAGCACAGCACTCTATTCTGTATTTTAGCTGTTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp AGGGTAGAAAGAACAGCTAAAATACAGAATAGAGTGCTGTGCTATACGGGACACTCTCACCACCTTGGCTaGAATGACGGCTTCACAAAC +
Preference number: 4 (lower is better)
Translates to: RVERTAKIQNRVLCYTGHSHHLG*NDGFTN
Trigger: GTTTGTGAAGCCGTCATTCCAGCCAAGGTGGTGAGA...GTGTCCCGTATAGCACAGCACTCTATTCTGTATTTTAGCTGTTCTTTCTACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp TCCTCCATGGCCTCCACCTTAGTCCCTGCCTTAACTTCCCTTAGTAATGAATGTTCCTATCTCTATCGATaGCATGGTGCAGCTGATATA +
Preference number: 4 (lower is better)
Translates to: SSMASTLVPALTSLSNECSYLYR*HGAADI
Trigger: TATATCAGCTGCACCATGCCATCGATAGAGATAGGA...ACATTCATTACTAAGGGAAGTTAAGGCAGGGACTAAGGTGGAGGCCATGGAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp CATACAACAGCAAAGGCAATCTTCCACAATAATACTGACACAATCACTAAGAGGTCCGCTGTGCTGTTCTaGGGAGAAGGATCAGCTATC +
Preference number: 4 (lower is better)
Translates to: HTTAKAIFHNNTDTITKRSAVLF*GEGSAI
Trigger: GATAGCTGATCCTTCTCCTCAGAACAGCACAGCGGA...CCTCTTAGTGATTGTGTCAGTATTATTGTGGAAGATTGCCTTTGCTGTTGTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp TCCTCCATGGCCTCCACCTTAGTCCCTGCCTTAACTTCCCTTAGTAATGAATGTGCATTCTCCAGTATCTaGAGACATTCTTCATTAGGT +
Preference number: 4 (lower is better)
Translates to: SSMASTLVPALTSLSNECAFSSI*RHSSLG
Trigger: ACCTAATGAAGAATGTCTGCAGATACTGGAGAATGC...ACATTCATTACTAAGGGAAGTTAAGGCAGGGACTAAGGTGGAGGCCATGGAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp TTGGTTGTCAACTTGACACTTGTAGGAAGAGGGAATCTCAATGATAACCTGGCTATAGTTCCCACTGACTaGCAGAATCTGCATGTCAGG +
Preference number: 4 (lower is better)
Translates to: LVVNLTLVGRGNLNDNLAIVPTD*QNLHVR
Trigger: CCTGACATGCAGATTCTGGCAGTCAGTGGGAACTAT...AGCCAGGTTATCATTGAGATTCCCTCTTCCTACAAGTGTCAAGTTGACAACCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp GACATTGGTTACAGTCACCAGCATAAAACACTCAATACTTTTTACTGCCACTTCAGCAGTGACAATGTTTaGTGCGTGGGCGTTGTAGCC +
Preference number: 4 (lower is better)
Translates to: DIGYSHQHKTLNTFYCHFSSDNV*CVGVVA
Trigger: GGCTACAACGCCCACGCAGCAAACATTGTCACTGCT...GAAGTGGCAGTAAAAAGTATTGAGTGTTTTATGCTGGTGACTGTAACCAATGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp CATGTCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCTGAGGTAGAAGGTTaGTCCCACCACCCACGGTTC +
Preference number: 4 (lower is better)
Translates to: HVHSSSTRQCIEIFNSQIAEVEG*SHHPRF
Trigger: GAACCGTGGGTGGTGGGACCAACCTTCTACCTCAGC...AATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp CTGTGCTATACGGGACACATTAGTATGATGGTTAAACTTGGTTGTCAACTTGACCCGGGAAGAATGTCATaGACACAAAGTAGTTGGCCA +
Preference number: 4 (lower is better)
Translates to: LCYTGHISMMVKLGCQLDPGRMS*TQSSWP
Trigger: TGGCCAACTACTTTGTGTTCATGACATTCTTCCCGG...GTCAAGTTGACAACCAAGTTTAACCATCATACTAATGTGTCCCGTATAGCACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp AAAGAACAGCTAAAATACAGAATAGAGTGCTGTGCTATACGGGACACATTAGTATCCGCTGTGCTGTTCTaGGGAGAAGGATCAGCTATC +
Preference number: 4 (lower is better)
Translates to: KEQLKYRIECCAIRDTLVSAVLF*GEGSAI
Trigger: GATAGCTGATCCTTCTCCTCAGAACAGCACAGCGGA...TACTAATGTGTCCCGTATAGCACAGCACTCTATTCTGTATTTTAGCTGTTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp CATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTCCACCTTGGCTGGAATaGCGGCTTCACAAACCACAG +
Preference number: 4 (lower is better)
Translates to: HSSSTRQCIEIFNSQIACPPWLE*RLHKPQ
Trigger: CTGTGGTTTGTGAAGCCGTCATTCCAGCCAAGGTGG...ACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR GCA 90 bp CATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTTAGTGGACGCCTGACATGGTaGCAACTCCAATCACAAGGC +
Preference number: 4 (lower is better)
Translates to: HLPLDSALRFLIHRLHVSGRLTW*QLQSQG
Trigger: GCCTTGTGATTGGAGTTGGCACCATGTCAGGCGTCC...ACTAACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp CATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTTAGTAGTGACAATGTTTGCTaGGTGGGCGTTGTAGCCGCC +
Preference number: 4 (lower is better)
Translates to: HLPLDSALRFLIHRLHVSSDNVC*VGVVAA
Trigger: GGCGGCTACAACGCCCACGCAGCAAACATTGTCACT...ACTAACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR GCA 90 bp ATGTCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGTCGGGCAAGCTGCCGTaGGTTTTCTCCAGGATTGTC +
Preference number: 4 (lower is better)
Translates to: MSIHLPLDSALRFLIHRLSGKLP*VFSRIV
Trigger: GACAATCCTGGAGAAAACGCACGGCAGCTTGCCCGA...CAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR CCA 90 bp CATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTTAGTGGCGGACGCCTGACATaGTGCCAACTCCAATCACAA +
Preference number: 4 (lower is better)
Translates to: HLPLDSALRFLIHRLHVSGGRLT*CQLQSQ
Trigger: TTGTGATTGGAGTTGGCACCATGTCAGGCGTCCGCC...ACTAACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp ACAAAACATGAATTTAGCAAGATGACATTGGTTACAGTCACCAGCATAAAACACGCTGAGCTGCCAAATTaGACGACCCTCACGGCTTTC +
Preference number: 4 (lower is better)
Translates to: TKHEFSKMTLVTVTSIKHAELPN*TTLTAF
Trigger: GAAAGCCGTGAGGGTCGTCCAATTTGGCAGCTCAGC...GTGTTTTATGCTGGTGACTGTAACCAATGTCATCTTGCTAAATTCATGTTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp CATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTTAGTTGGCGTCCCCCGTCCTaGACTGGAAACGGATATAGA +
Preference number: 4 (lower is better)
Translates to: HLPLDSALRFLIHRLHVSWRPPS*TGNGYR
Trigger: TCTATATCCGTTTCCAGTCCAGGACGGGGGACGCCA...ACTAACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp AGTATGATGGTTAAACTTGGTTGTCAACTTGACACTTGTAGGAAGAGGGAATCTTGCAATAGTTCCCACTaGCTGCCAGAATCTGCATGT +
Preference number: 4 (lower is better)
Translates to: SMMVKLGCQLDTCRKRESCNSSH*LPESAC
Trigger: ACATGCAGATTCTGGCAGTCAGTGGGAACTATTGCA...AGATTCCCTCTTCCTACAAGTGTCAAGTTGACAACCAAGTTTAACCATCATACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp TTGGTTGTCAACTTGACACTTGTAGGAAGAGGGAATCTCAATGATAACCTGGCTCAACTGGATGATCTCTaGATCACTAAGGAACTTTGC +
Preference number: 4 (lower is better)
Translates to: LVVNLTLVGRGNLNDNLAQLDDL*ITKELC
Trigger: GCAAAGTTCCTTAGTGATGCAGAGATCATCCAGTTG...AGCCAGGTTATCATTGAGATTCCCTCTTCCTACAAGTGTCAAGTTGACAACCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp GATCATGTCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGCCAGGTCTTTACTTCTaGAGAGTCACAAGCACGTGG +
Preference number: 4 (lower is better)
Translates to: DHVHSSSTRQCIEIFNSQPGLYF*RVTSTW
Trigger: CCACGTGCTTGTGACTCTGCAGAAGTAAAGACCTGG...CTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACATGATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp TTAGTCCCTGCCTTAACTTCCCTTAGTAATGAATGTCTACCTAGATGTGTAAGTGGCCTCCTTTATCACTaGAAACCCTTCAGGTGTTTC +
Preference number: 4 (lower is better)
Translates to: LVPALTSLSNECLPRCVSGLLYH*KPFRCF
Trigger: GAAACACCTGAAGGGTTTGCAGTGATAAAGGAGGCC...ACTTACACATCTAGGTAGACATTCATTACTAAGGGAAGTTAAGGCAGGGACTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp TTAGTCCCTGCCTTAACTTCCCTTAGTAATGAATGTCTACCTAGATGTGTAAGTCTGAAGCTTCAGCAGTaGTTTCTCCGTACCCTTAGA +
Preference number: 4 (lower is better)
Translates to: LVPALTSLSNECLPRCVSLKLQQ*FLRTLR
Trigger: TCTAAGGGTACGGAGAAAGCACTGCTGAAGCTTCAG...ACTTACACATCTAGGTAGACATTCATTACTAAGGGAAGTTAAGGCAGGGACTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp AGTATGATGGTTAAACTTGGTTGTCAACTTGACACTTGTAGGAAGAGGGAATCTCTGACTGCCAGAATCTaGATGTCAGGAAAGAACTCC +
Preference number: 4 (lower is better)
Translates to: SMMVKLGCQLDTCRKRESLTARI*MSGKNS
Trigger: GGAGTTCTTTCCTGACATGCAGATTCTGGCAGTCAG...AGATTCCCTCTTCCTACAAGTGTCAAGTTGACAACCAAGTTTAACCATCATACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp TCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATAGCAGTGACAATGTTTaGTGCGTGGGCGTTGTAGCC +
Preference number: 4 (lower is better)
Translates to: SIHLPLDSALRFLIHRLHSSDNV*CVGVVA
Trigger: GGCTACAACGCCCACGCAGCAAACATTGTCACTGCT...ATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR GCA 90 bp CATGTCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTACAATTCGGGCAAGCTaGCGTGCGTTTTCTCCAGGA +
Preference number: 4 (lower is better)
Translates to: HVHSSSTRQCIEIFNSQITIRAS*RAFSPG
Trigger: TCCTGGAGAAAACGCACGGCAGCTTGCCCGAATTGT...AATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR GCA 90 bp CATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTTAGTGACAAGATGTCCTGCTaGCAAGGCTGCCATCAAGGA +
Preference number: 4 (lower is better)
Translates to: HLPLDSALRFLIHRLHVSDKMSC*QGCHQG
Trigger: TCCTTGATGGCAGCCTTGGCAGCAGGACATCTTGTC...ACTAACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR CCA 90 bp CACATTAGTATGATGGTTAAACTTGGTTGTCAACTTGACACTTGTAGGAAGAGGTCAACTTTTCTCTCTTaGTTCGCTCCTGGATCCTCC +
Preference number: 4 (lower is better)
Translates to: HISMMVKLGCQLDTCRKRSTFLS*FAPGSS
Trigger: GGAGGATCCAGGAGCGAACCAAGAGAGAAAAGTTGA...CCTCTTCCTACAAGTGTCAAGTTGACAACCAAGTTTAACCATCATACTAATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp TTAGTCCCTGCCTTAACTTCCCTTAGTAATGAATGTCTACCTAGATGTGTAAGTCCACTCCAACAGGGATaGGCATATATCCGATCACAT +
Preference number: 4 (lower is better)
Translates to: LVPALTSLSNECLPRCVSPLQQG*AYIRSH
Trigger: ATGTGATCGGATATATGCCCATCCCTGTTGGAGTGG...ACTTACACATCTAGGTAGACATTCATTACTAAGGGAAGTTAAGGCAGGGACTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp TTAGTCCCTGCCTTAACTTCCCTTAGTAATGAATGTCTACCTAGATGTGTAAGTTCTTGTTGTTGCCGGTaGACATGTTCATGGACATCA +
Preference number: 4 (lower is better)
Translates to: LVPALTSLSNECLPRCVSSCCCR*TCSWTS
Trigger: TGATGTCCATGAACATGTTCACCGGCAACAACAAGA...ACTTACACATCTAGGTAGACATTCATTACTAAGGGAAGTTAAGGCAGGGACTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp CATACAACAGCAAAGGCAATCTTCCACAATAATACTGACACAATCACTAAGAGGCTACAACAGTTGTCTTaGGCTTTCTTTGAGGTCACG +
Preference number: 4 (lower is better)
Translates to: HTTAKAIFHNNTDTITKRLQQLS*AFFEVT
Trigger: CGTGACCTCAAAGAAAGCTCAAGACAACTGTTGTAG...CCTCTTAGTGATTGTGTCAGTATTATTGTGGAAGATTGCCTTTGCTGTTGTATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp CACATTAGTATGATGGTTAAACTTGGTTGTCAACTTGACACTTGTAGGAAGAGGCTACAACAGTTGTCTTaGGCTTTCTTTGAGGTCACG +
Preference number: 4 (lower is better)
Translates to: HISMMVKLGCQLDTCRKRLQQLS*AFFEVT
Trigger: CGTGACCTCAAAGAAAGCTCAAGACAACTGTTGTAG...CCTCTTCCTACAAGTGTCAAGTTGACAACCAAGTTTAACCATCATACTAATGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR TCA 90 bp GATCATGTCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGTCAGGAAAGAACTCCTaGAGCTTCAGCAGTGCTTTC +
Preference number: 4 (lower is better)
Translates to: DHVHSSSTRQCIEIFNSQSGKNS*SFSSAF
Trigger: GAAAGCACTGCTGAAGCTTCAGGAGTTCTTTCCTGA...CTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACATGATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000168855.2
CDS-3UTR TCA 90 bp CATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTGAACCATGTGACTTCTaGCAAGATGTCCTGCTGCCA +
Preference number: 4 (lower is better)
Translates to: HSSSTRQCIEIFNSQIACEPCDF*QDVLLP
Trigger: TGGCAGCAGGACATCTTGTCAGAAGTCACATGGTTC...ACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR GCA 90 bp CATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTTAGTGCAAAATGGCTGAGCTaGCAAATTGGACGACCCTCA +
Preference number: 4 (lower is better)
Translates to: HLPLDSALRFLIHRLHVSAKWLS*QIGRPS
Trigger: TGAGGGTCGTCCAATTTGGCAGCTCAGCCATTTTGC...ACTAACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp GTAGAAAGAACAGCTAAAATACAGAATAGAGTGCTGTGCTATACGGGACACATTCTTTGCACCTTTCTCTaGATTCTCCAGTATCTGCAG +
Preference number: 4 (lower is better)
Translates to: VERTAKIQNRVLCYTGHILCTFL*ILQYLQ
Trigger: CTGCAGATACTGGAGAATGCAGAGAAAGGTGCAAAG...AATGTGTCCCGTATAGCACAGCACTCTATTCTGTATTTTAGCTGTTCTTTCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp CATGTCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTCACCAGCCATCACAGTaGCACATACAATTCGGGCAA +
Preference number: 4 (lower is better)
Translates to: HVHSSSTRQCIEIFNSQIHQPSQ*HIQFGQ
Trigger: TTGCCCGAATTGTATGTGGCACTGTGATGGCTGGTG...AATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR CCA 90 bp GCACTCTTGGAATGTCTTTCAGAGTCCATCTTCTACACAAATGTCAGCTTCCCATTGGGTTACGGGGTTTaGTTTATTTTCTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: ALLECLSESIFYTNVSFPLGYGV*FIFFFF
Trigger: GAAGAAGAAGAAAATAAACCAAACCCCGTAACCCAA...TGGGAAGCTGACATTTGTGTAGAAGATGGACTCTGAAAGACATTCCAAGAGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp ACCTTAGTCCCTGCCTTAACTTCCCTTAGTAATGAATGTCTACCTAGATGTGTACCAGAGAGAAACACTTaGTTCAATTCTCTTGGACAC +
Preference number: 4 (lower is better)
Translates to: TLVPALTSLSNECLPRCVPERNT*FNSLGH
Trigger: GTGTCCAAGAGAATTGAACCAAGTGTTTCTCTCTGG...TACACATCTAGGTAGACATTCATTACTAAGGGAAGTTAAGGCAGGGACTAAGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp ATGTCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGGACGAGCAAATCTGCTaGTGCTATCAAAGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: MSIHLPLDSALRFLIHRLDEQIC*CYQRPP
Trigger: AGGAGGCCTTTGATAGCACCAGCAGATTTGCTCGTC...CAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp TCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATTCTCACCACCTTGGCTaGAATGACGGCTTCACAAAC +
Preference number: 4 (lower is better)
Translates to: SIHLPLDSALRFLIHRLHSHHLG*NDGFTN
Trigger: GTTTGTGAAGCCGTCATTCCAGCCAAGGTGGTGAGA...ATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR TCA 90 bp AGTATGATGGTTAAACTTGGTTGTCAACTTGACACTTGTAGGAAGAGGGAATCTCCTGTGAATTTGAACTaGGGGCAAACTTTGCTAATG +
Preference number: 4 (lower is better)
Translates to: SMMVKLGCQLDTCRKRESPVNLN*GQTLLM
Trigger: CATTAGCAAAGTTTGCCCTCAGTTCAAATTCACAGG...AGATTCCCTCTTCCTACAAGTGTCAAGTTGACAACCAAGTTTAACCATCATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp CATGTCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGTAGACGAGCAAATCTaGTGGTGCTATCAAAGGCCT +
Preference number: 4 (lower is better)
Translates to: HVHSSSTRQCIEIFNSQIVDEQI*WCYQRP
Trigger: AGGCCTTTGATAGCACCAGCAGATTTGCTCGTCTAC...AATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp CATGTCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTCTGACTGCCAGAATCTaGATGTCAGGAAAGAACTCC +
Preference number: 4 (lower is better)
Translates to: HVHSSSTRQCIEIFNSQILTARI*MSGKNS
Trigger: GGAGTTCTTTCCTGACATGCAGATTCTGGCAGTCAG...AATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR GCA 90 bp TCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATCTGACTGCCAGAATCTaGATGTCAGGAAAGAACTCC +
Preference number: 4 (lower is better)
Translates to: SIHLPLDSALRFLIHRLHLTARI*MSGKNS
Trigger: GGAGTTCTTTCCTGACATGCAGATTCTGGCAGTCAG...ATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR GCA 90 bp CATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTTAGTATAGTTCCCACTGACTaGCAGAATCTGCATGTCAGG +
Preference number: 4 (lower is better)
Translates to: HLPLDSALRFLIHRLHVSIVPTD*QNLHVR
Trigger: CCTGACATGCAGATTCTGGCAGTCAGTGGGAACTAT...ACTAACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR GCA 90 bp CATGTCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTATAGTTCCCACTGACTaGCAGAATCTGCATGTCAGG +
Preference number: 4 (lower is better)
Translates to: HVHSSSTRQCIEIFNSQIIVPTD*QNLHVR
Trigger: CCTGACATGCAGATTCTGGCAGTCAGTGGGAACTAT...AATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR CCA 90 bp CATACAACAGCAAAGGCAATCTTCCACAATAATACTGACACAATCACTAAGAGGAAAACTCTGGCAAAATaGCTGAGCTGCCAAATTGGA +
Preference number: 4 (lower is better)
Translates to: HTTAKAIFHNNTDTITKRKTLAK*LSCQIG
Trigger: TCCAATTTGGCAGCTCAGCCATTTTGCCAGAGTTTT...CCTCTTAGTGATTGTGTCAGTATTATTGTGGAAGATTGCCTTTGCTGTTGTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp CATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTTAGTCTTCGATCCAATTTATaGCAGCAGGCTTCTTGTCGG +
Preference number: 4 (lower is better)
Translates to: HLPLDSALRFLIHRLHVSLRSNL*QQASCR
Trigger: CCGACAAGAAGCCTGCTGCCATAAATTGGATCGAAG...ACTAACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR GCA 90 bp ACAAAACATGAATTTAGCAAGATGACATTGGTTACAGTCACCAGCATAAAACACCTCAGGGTAATCACTTaGTCAATGTCCATGCTGATC +
Preference number: 4 (lower is better)
Translates to: TKHEFSKMTLVTVTSIKHLRVIT*SMSMLI
Trigger: GATCAGCATGGACATTGAGCAAGTGATTACCCTGAG...GTGTTTTATGCTGGTGACTGTAACCAATGTCATCTTGCTAAATTCATGTTTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR GCA 90 bp CATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTCTCCAGGATTGTCTTTaGATGCTCCTTGAACACCTA +
Preference number: 4 (lower is better)
Translates to: HSSSTRQCIEIFNSQIACLQDCL*MLLEHL
Trigger: TAGGTGTTCAAGGAGCATGCAAAGACAATCCTGGAG...ACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR TCA 90 bp ACAAAACATGAATTTAGCAAGATGACATTGGTTACAGTCACCAGCATAAAACACCCTGTGAATTTGAACTaGGGGCAAACTTTGCTAATG +
Preference number: 4 (lower is better)
Translates to: TKHEFSKMTLVTVTSIKHPVNLN*GQTLLM
Trigger: CATTAGCAAAGTTTGCCCTCAGTTCAAATTCACAGG...GTGTTTTATGCTGGTGACTGTAACCAATGTCATCTTGCTAAATTCATGTTTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp GACATTGGTTACAGTCACCAGCATAAAACACTCAATACTTTTTACTGCCACTTCCAAAGAAAATATACTTaGCAGCCAAAAGGAAGGCTA +
Preference number: 4 (lower is better)
Translates to: DIGYSHQHKTLNTFYCHFQRKYT*QPKGRL
Trigger: TAGCCTTCCTTTTGGCTGTCAAGTATATTTTCTTTG...GAAGTGGCAGTAAAAAGTATTGAGTGTTTTATGCTGGTGACTGTAACCAATGTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp GTAGAAAGAACAGCTAAAATACAGAATAGAGTGCTGTGCTATACGGGACACATTCAAAGAAAATATACTTaGCAGCCAAAAGGAAGGCTA +
Preference number: 4 (lower is better)
Translates to: VERTAKIQNRVLCYTGHIQRKYT*QPKGRL
Trigger: TAGCCTTCCTTTTGGCTGTCAAGTATATTTTCTTTG...AATGTGTCCCGTATAGCACAGCACTCTATTCTGTATTTTAGCTGTTCTTTCTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR GCA 90 bp GATCATGTCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGGCATTCTCCAGTATCTaGAGACATTCTTCATTAGGT +
Preference number: 4 (lower is better)
Translates to: DHVHSSSTRQCIEIFNSQAFSSI*RHSSLG
Trigger: ACCTAATGAAGAATGTCTGCAGATACTGGAGAATGC...CTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACATGATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp AATAGAGTGCTGTGCTATACGGGACACATTAGTATGATGGTTAAACTTGGTTGTTTGGGTTACGGGGTTTaGTTTATTTTCTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: NRVLCYTGHISMMVKLGCLGYGV*FIFFFF
Trigger: GAAGAAGAAGAAAATAAACCAAACCCCGTAACCCAA...ACAACCAAGTTTAACCATCATACTAATGTGTCCCGTATAGCACAGCACTCTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CCA 90 bp CATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTTTGGTTCAATTCTCTTaGACACATCTTCGTCCAGAC +
Preference number: 4 (lower is better)
Translates to: HSSSTRQCIEIFNSQIACLVQFS*THLRPD
Trigger: GTCTGGACGAAGATGTGTCCAAGAGAATTGAACCAA...ACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CCA 90 bp TCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATTCCTATCTCTATCGATaGCATGGTGCAGCTGATATA +
Preference number: 4 (lower is better)
Translates to: SIHLPLDSALRFLIHRLHSYLYR*HGAADI
Trigger: TATATCAGCTGCACCATGCCATCGATAGAGATAGGA...ATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
3UTR CAA 72 bp CTGATCATGTCCATTCATCTTCCACTAGACAGTGCATaGAGATTTTTAATTCACAGATTGCATGTTAGTCCT +
Preference number: 4 (lower is better)
Translates to: LIMSIHLPLDSA*RFLIHRLHVSP
Trigger: AGGACTAACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACATGATCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000168855.2
ENSMUST00000169945.8
CDS-3UTR TCA 90 bp CATGTCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTATGGCATGGTGCAGCTaGTATATAAGTCTTCATTTG +
Preference number: 4 (lower is better)
Translates to: HVHSSSTRQCIEIFNSQIMAWCS*YISLHL
Trigger: CAAATGAAGACTTATATATCAGCTGCACCATGCCAT...AATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR TCA 90 bp GATCATGTCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGTTGGTGCACGTTCCTTaGAGATCTTGTAAATTTATC +
Preference number: 4 (lower is better)
Translates to: DHVHSSSTRQCIEIFNSQLVHVP*RSCKFI
Trigger: GATAAATTTACAAGATCTTCAAGGAACGTGCACCAA...CTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACATGATC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS GCA 90 bp TCTGCAGCCTCTGTTAGTGCTGGCCACAAGACAGCCTTCCGTCGTTaGCATCGGCACCTGGTACTCCTTCCCATCCAGGCACAGAGGCCC +
Preference number: 5 (lower is better)
Translates to: SAASVSAGHKTAFRR*HRHLVLLPIQAQRP
Trigger: GGGCCTCTGTGCCTGGATGGGAAGGAGTACCAGGTGCCGATGGCAACGACGGAAGGCTGTCTTGTGGCCAGCACTAACAGAGGCTGCAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS GCA 90 bp ACAAGCACGTGGAAGACGCACCACTGGGCCTCGAGTCATCCCATCTaGAAGGACCCGGCTGCTGGCACCTCCACCAAGGCTTATGGCTCT +
Preference number: 5 (lower is better)
Translates to: TSTWKTHHWASSHPI*KDPAAGTSTKAYGS
Trigger: AGAGCCATAAGCCTTGGTGGAGGTGCCAGCAGCCGGGTCCTTGCAGATGGGATGACTCGAGGCCCAGTGGTGCGTCTTCCACGTGCTTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS CCA 90 bp TTAGTGCTGGCCACAAGACAGCCTTCCGTCGTTGCCATCGGCACCTaGTACTCCTTCCCATCCAGGCACAGAGGCCCTGCCACTCCAACA +
Preference number: 5 (lower is better)
Translates to: LVLATRQPSVVAIGT*YSFPSRHRGPATPT
Trigger: TGTTGGAGTGGCAGGGCCTCTGTGCCTGGATGGGAAGGAGTACCAGGTGCCGATGGCAACGACGGAAGGCTGTCTTGTGGCCAGCACTAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS CCA 90 bp GGTCTTTACTTCTGCAGAGTCACAAGCACGTGGAAGACGCACCACTaGGCCTCGAGTCATCCCATCTGCAAGGACCCGGCTGCTGGCACC +
Preference number: 5 (lower is better)
Translates to: GLYFCRVTSTWKTHH*ASSHPICKDPAAGT
Trigger: GGTGCCAGCAGCCGGGTCCTTGCAGATGGGATGACTCGAGGCCCAGTGGTGCGTCTTCCACGTGCTTGTGACTCTGCAGAAGTAAAGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS GCA 90 bp ACAAGCACGTGGAAGACGCACCACTGGGCCTCGAGTCATCCCATCTaGAAGGACCCGGCTGCTGGCACCTCCACCAAGCAAGGAATAATT +
Preference number: 5 (lower is better)
Translates to: TSTWKTHHWASSHPI*KDPAAGTSTKQGII
Trigger: AATTATTCCTTGCTTGGTGGAGGTGCCAGCAGCCGGGTCCTTGCAGATGGGATGACTCGAGGCCCAGTGGTGCGTCTTCCACGTGCTTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169202.2
CDS GCA 90 bp TGCCCATGGCGTCCCCCGTCCTGGACTGGAAACGGATATAGAGGTTaGGTCCTGCCATCGTCACGTGGAGTTTCTGTAGACGAGCAAATC +
Preference number: 5 (lower is better)
Translates to: CPWRPPSWTGNGYRG*VLPSSRGVSVDEQI
Trigger: GATTTGCTCGTCTACAGAAACTCCACGTGACGATGGCAGGACGCAACCTCTATATCCGTTTCCAGTCCAGGACGGGGGACGCCATGGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS TCA 90 bp ACAGGCCGGGAAGAATGTCATGAACACAAAGTAGTTGGCCAACACTaGCATGCAGCCGAAGCAGCACATGATCTCCAGCTGGCGGACGCC +
Preference number: 5 (lower is better)
Translates to: TGREECHEHKVVGQH*HAAEAAHDLQLADA
Trigger: GGCGTCCGCCAGCTGGAGATCATGTGCTGCTTCGGCTGCATGTCAGTGTTGGCCAACTACTTTGTGTTCATGACATTCTTCCCGGCCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS CCA 90 bp ACTCCTTCCCATCCAGGCACAGAGGCCCTGCCACTCCAACAGGGATaGGCATATATCCGATCACATTCTCACAGCAAGCTCCCATCACCA +
Preference number: 5 (lower is better)
Translates to: TPSHPGTEALPLQQG*AYIRSHSHSKLPSP
Trigger: TGGTGATGGGAGCTTGCTGTGAGAATGTGATCGGATATATGCCCATCCCTGTTGGAGTGGCAGGGCCTCTGTGCCTGGATGGGAAGGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS TCA 90 bp ACACAAAGTAGTTGGCCAACACTGACATGCAGCCGAAGCAGCACATaGTCTCCAGCTGGCGGACGCCTGACATGGTGCCAACTCCAATCA +
Preference number: 5 (lower is better)
Translates to: TQSSWPTLTCSRSST*SPAGGRLTWCQLQS
Trigger: TGATTGGAGTTGGCACCATGTCAGGCGTCCGCCAGCTGGAGATCATGTGCTGCTTCGGCTGCATGTCAGTGTTGGCCAACTACTTTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169196.8
ENSMUST00000170287.8
CDS GCA 90 bp GACGCACCACTGGGCCTCGAGTCATCCCATCTGCAAGGACCCGGCTaGTGGCACCTCCACCAAGCAAGGAATAATTATAATCTCTGTAAG +
Preference number: 5 (lower is better)
Translates to: DAPLGLESSHLQGPG*WHLHQARNNYNLCK
Trigger: CTTACAGAGATTATAATTATTCCTTGCTTGGTGGAGGTGCCAGCAGCCGGGTCCTTGCAGATGGGATGACTCGAGGCCCAGTGGTGCGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169202.2
CDS TCA 90 bp GAGAAAGCTCTAGGACCAGCGACACACAGGCCGGGAAGAATGTCATaGACACAAAGTAGTTGGCCAACACTGACATGCAGCCGAAGCAGC +
Preference number: 5 (lower is better)
Translates to: EKALGPATHRPGRMS*TQSSWPTLTCSRSS
Trigger: GCTGCTTCGGCTGCATGTCAGTGTTGGCCAACTACTTTGTGTTCATGACATTCTTCCCGGCCTGTGTGTCGCTGGTCCTAGAGCTTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS GCA 90 bp GTTCCCACAATAACTTCCCAGGGGTGGGAGGCCACGAAGAGGCCATaGATCCGGAAAAGTCTTGACAACATTGTAGCCTCACAGTCCTTG +
Preference number: 5 (lower is better)
Translates to: VPTITSQGWEATKRP*IRKSLDNIVASQSL
Trigger: CAAGGACTGTGAGGCTACAATGTTGTCAAGACTTTTCCGGATGCATGGCCTCTTCGTGGCCTCCCACCCCTGGGAAGTTATTGTGGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171537.2
CDS-3UTR CAA 90 bp TGCATGTTAGTCCTTGAGAACCCAATGCCCGCGCTTCAGTTCAGTGTCAGGATCACCTCTCTCACCACCTaGGCTGGAATGACGGCTTCA +
Preference number: 5 (lower is better)
Translates to: CMLVLENPMPALQFSVRITSLTT*AGMTAS
Trigger: TGAAGCCGTCATTCCAGCCAAGGTGGTGAGAGAGGT...GATCCTGACACTGAACTGAAGCGCGGGCATTGGGTTCTCAAGGACTAACATGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS GCA 90 bp TATCACTGCAAACCCTTCAGGTGTTTCAAGCCAGGTCTTTACTTCTaGAGAGTCACAAGCACGTGGAAGACGCACCACTGGGCCTCGAGT +
Preference number: 5 (lower is better)
Translates to: YHCKPFRCFKPGLYF*RVTSTWKTHHWASS
Trigger: ACTCGAGGCCCAGTGGTGCGTCTTCCACGTGCTTGTGACTCTGCAGAAGTAAAGACCTGGCTTGAAACACCTGAAGGGTTTGCAGTGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp GAGTCTCTGTGCAAAGAACCTCAGACGTCTCTGAAAGCGCCAGAAACCAAGCAGATACCCAGAATGTACTaGGACCCAAGCTGCCGTAGG +
Preference number: 5 (lower is better)
Translates to: ESLCKEPQTSLKAPETKQIPRMY*DPSCRR
Trigger: CCTACGGCAGCTTGGGTCCAAGTACATTCTGGGTAT...CTGCTTGGTTTCTGGCGCTTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS TCA 90 bp TGGTGCCAACTCCAATCACAAGGCATTCCACAAGAGCGTCAAGAGTaGATGTGGGGCCCAGGATTGCCATTCCACGAGCTATATTTTCCC +
Preference number: 5 (lower is better)
Translates to: WCQLQSQGIPQERQE*MWGPGLPFHELYFP
Trigger: GGGAAAATATAGCTCGTGGAATGGCAATCCTGGGCCCCACATTCACTCTTGACGCTCTTGTGGAATGCCTTGTGATTGGAGTTGGCACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169196.8
ENSMUST00000170287.8
CDS CCA 90 bp CTCTCTTGGTTCGCTCCTGGATCCTCCTCTACTGACGAAAGCTTCTaGTTCCTTCTCACAAGCAGAGGCTCACGTCTACAACAGTTGTCT +
Preference number: 5 (lower is better)
Translates to: LSWFAPGSSSTDESF*FLLTSRGSRLQQLS
Trigger: AGACAACTGTTGTAGACGTGAGCCTCTGCTTGTGAGAAGGAACCAGAAGCTTTCGTCAGTAGAGGAGGATCCAGGAGCGAACCAAGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS CCA 90 bp GTCCTGCCATCGTCACGTGGAGTTTCTGTAGACGAGCAAATCTGCTaGTGCTATCAAAGGCCTCCTTTATCACTGCAAACCCTTCAGGTG +
Preference number: 5 (lower is better)
Translates to: VLPSSRGVSVDEQIC*CYQRPPLSLQTLQV
Trigger: CACCTGAAGGGTTTGCAGTGATAAAGGAGGCCTTTGATAGCACCAGCAGATTTGCTCGTCTACAGAAACTCCACGTGACGATGGCAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp CTCAATGATAACCTGGCTCCAGCAGTTTGGCCTATGGACATCTCCTCGGGATGTCAGCCACAGATCTTGTaGTTGCCGGTGAACATGTTC +
Preference number: 5 (lower is better)
Translates to: LNDNLAPAVWPMDISSGCQPQIL*LPVNMF
Trigger: GAACATGTTCACCGGCAACAACAAGATCTGTGGCTG...ACATCCCGAGGAGATGTCCATAGGCCAAACTGCTGGAGCCAGGTTATCATTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS TCA 90 bp AACCTCAACTTTTCTCTCTTGGTTCGCTCCTGGATCCTCCTCTACTaGCGAAAGCTTCTGGTTCCTTCTCACAAGCAGAGGCTCACGTCT +
Preference number: 5 (lower is better)
Translates to: NLNFSLLVRSWILLY*RKLLVPSHKQRLTS
Trigger: AGACGTGAGCCTCTGCTTGTGAGAAGGAACCAGAAGCTTTCGTCAGTAGAGGAGGATCCAGGAGCGAACCAAGAGAGAAAAGTTGAGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS GCA 90 bp ATACAATTCGGGCAAGCTGCCGTGCGTTTTCTCCAGGATTGTCTTTaGATGCTCCTTGAACACCTAGCATCTGGCCACATGCGATGTAGA +
Preference number: 5 (lower is better)
Translates to: IQFGQAAVRFLQDCL*MLLEHLASGHMRCR
Trigger: TCTACATCGCATGTGGCCAGATGCTAGGTGTTCAAGGAGCATGCAAAGACAATCCTGGAGAAAACGCACGGCAGCTTGCCCGAATTGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169945.8
CDS CCA 90 bp ATACAGATTGTAAGTGTCACTGTTCCCACAATAACTTCCCAGGGGTaGGAGGCCACGAAGAGGCCATGCATCCGGAAAAGTCTTGACAAC +
Preference number: 5 (lower is better)
Translates to: IQIVSVTVPTITSQG*EATKRPCIRKSLDN
Trigger: GTTGTCAAGACTTTTCCGGATGCATGGCCTCTTCGTGGCCTCCCACCCCTGGGAAGTTATTGTGGGAACAGTGACACTTACAATCTGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022176.15
ENSMUST00000168855.2
ENSMUST00000169196.8
ENSMUST00000169966.2
ENSMUST00000170287.8
ENSMUST00000171537.2
CDS-3UTR CAA 90 bp AGAGTTCCCACATCTGAGGAGTCTCTGTGCAAAGAACCTCAGACGTCTCTGAAAATGTGGGGCCCAGGATaGCCATTCCACGAGCTATAT +
Preference number: 5 (lower is better)
Translates to: RVPTSEESLCKEPQTSLKMWGPG*PFHELY
Trigger: ATATAGCTCGTGGAATGGCAATCCTGGGCCCCACAT...TTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAGATGTGGGAACTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CAA 90 bp AAACGAACTGTAGCTCACATCTGTGGTGCTCAGAGCACCGGTACCATCCACGTGACTCAGGGTAATCACTaGCTCAATGTCCATGCTGAT +
Preference number: 5 (lower is better)
Translates to: KRTVAHICGAQSTGTIHVTQGNH*LNVHAD
Trigger: ATCAGCATGGACATTGAGCAAGTGATTACCCTGAGT...CACGTGGATGGTACCGGTGCTCTGAGCACCACAGATGTGAGCTACAGTTCGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS GCA 90 bp CTGCCATCGTCACGTGGAGTTTCTGTAGACGAGCAAATCTGCTGGTaGTATCAAAGGCCTCCTTTATCACTGCAAACCCTTCAGGTGTTT +
Preference number: 5 (lower is better)
Translates to: LPSSRGVSVDEQICW*YQRPPLSLQTLQVF
Trigger: AAACACCTGAAGGGTTTGCAGTGATAAAGGAGGCCTTTGATAGCACCAGCAGATTTGCTCGTCTACAGAAACTCCACGTGACGATGGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS GCA 90 bp ATTTATGGCAGCAGGCTTCTTGTCGGTGCAATAGTTCCCACTGACTaGCAGAATCTGCATGTCAGGAAAGAACTCCTGAAGCTTCAGCAG +
Preference number: 5 (lower is better)
Translates to: IYGSRLLVGAIVPTD*QNLHVRKELLKLQQ
Trigger: CTGCTGAAGCTTCAGGAGTTCTTTCCTGACATGCAGATTCTGGCAGTCAGTGGGAACTATTGCACCGACAAGAAGCCTGCTGCCATAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp AGAGGTGAGCCCCACACTGATCACCAGTTTCCAGCTTGTGGTAGCTTTCAGAAACCACAGATCTTGTTGTaGCCGGTGAACATGTTCATG +
Preference number: 5 (lower is better)
Translates to: RGEPHTDHQFPACGSFQKPQILL*PVNMFM
Trigger: CATGAACATGTTCACCGGCAACAACAAGATCTGTGG...TTTCTGAAAGCTACCACAAGCTGGAAACTGGTGATCAGTGTGGGGCTCACCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CAA 90 bp ACTGTAGCTCACATCTGTGGTGCTCAGAGCACCGGTACCATCCACGTGAGATCTGAGCCCACAAGATTCTaGTTAATGTTTACGTCAACC +
Preference number: 5 (lower is better)
Translates to: TVAHICGAQSTGTIHVRSEPTRF*LMFTST
Trigger: GGTTGACGTAAACATTAACAAGAATCTTGTGGGCTC...AGATCTCACGTGGATGGTACCGGTGCTCTGAGCACCACAGATGTGAGCTACAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS TCA 90 bp TCCAATTTATGGCAGCAGGCTTCTTGTCGGTGCAATAGTTCCCACTaGCTGCCAGAATCTGCATGTCAGGAAAGAACTCCTGAAGCTTCA +
Preference number: 5 (lower is better)
Translates to: SNLWQQASCRCNSSH*LPESACQERTPEAS
Trigger: TGAAGCTTCAGGAGTTCTTTCCTGACATGCAGATTCTGGCAGTCAGTGGGAACTATTGCACCGACAAGAAGCCTGCTGCCATAAATTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp GCAGTCAAAGAATGTGAGCTGAACATGAGGCTAGAACCAGCCAATATGCAGTGCCCACAGATCTTGTTGTaGCCGGTGAACATGTTCATG +
Preference number: 5 (lower is better)
Translates to: AVKECELNMRLEPANMQCPQILL*PVNMFM
Trigger: CATGAACATGTTCACCGGCAACAACAAGATCTGTGG...GCACTGCATATTGGCTGGTTCTAGCCTCATGTTCAGCTCACATTCTTTGACTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp CTTGATTGCAAACTGATGAAGAACCCAGTCCCTGGGCCTGGGCAGTCAAAGAATCTTGGTTCAATTCTCTaGGACACATCTTCGTCCAGA +
Preference number: 5 (lower is better)
Translates to: LDCKLMKNPVPGPGQSKNLGSIL*DTSSSR
Trigger: TCTGGACGAAGATGTGTCCAAGAGAATTGAACCAAG...ATTCTTTGACTGCCCAGGCCCAGGGACTGGGTTCTTCATCAGTTTGCAATCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp GCCTGGGCAGTCAAAGAATGTGAGCTGAACATGAGGCTAGAACCAGCCAATATGGCCAGAGAGAAACACTaGGTTCAATTCTCTTGGACA +
Preference number: 5 (lower is better)
Translates to: AWAVKECELNMRLEPANMAREKH*VQFSWT
Trigger: TGTCCAAGAGAATTGAACCAAGTGTTTCTCTCTGGC...CATATTGGCTGGTTCTAGCCTCATGTTCAGCTCACATTCTTTGACTGCCCAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp AGAGTTCCCACATCTGAGGAGTCTCTGTGCAAAGAACCTCAGACGTCTCTGAAACTTGGTTCAATTCTCTaGGACACATCTTCGTCCAGA +
Preference number: 5 (lower is better)
Translates to: RVPTSEESLCKEPQTSLKLGSIL*DTSSSR
Trigger: TCTGGACGAAGATGTGTCCAAGAGAATTGAACCAAG...TTTCAGAGACGTCTGAGGTTCTTTGCACAGAGACTCCTCAGATGTGGGAACTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CAA 90 bp ATCTCAATGATAACCTGGCTCCAGCAGTTTGGCCTATGGACATCTCCTCGGGATTATATAAGTCTTCATTaGTGGGACCACTGGCTTCCA +
Preference number: 5 (lower is better)
Translates to: ISMITWLQQFGLWTSPRDYISLH*WDHWLP
Trigger: TGGAAGCCAGTGGTCCCACAAATGAAGACTTATATA...ATCCCGAGGAGATGTCCATAGGCCAAACTGCTGGAGCCAGGTTATCATTGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS CCA 90 bp TCTGCTTCCACCACTAATGGTTTTATAACCTCAACTTTTCTCTCTTaGTTCGCTCCTGGATCCTCCTCTACTGACGAAAGCTTCTGGTTC +
Preference number: 5 (lower is better)
Translates to: SASTTNGFITSTFLS*FAPGSSSTDESFWF
Trigger: GAACCAGAAGCTTTCGTCAGTAGAGGAGGATCCAGGAGCGAACCAAGAGAGAAAAGTTGAGGTTATAAAACCATTAGTGGTGGAAGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp CAGTTTCCAGCTTGTGGTAGCTTTCAGAAACGAACTGTAGCTCACATCTGTGGTAAAGACATAATCATCTaGACCCTTTGGGTTACGGGG +
Preference number: 5 (lower is better)
Translates to: QFPACGSFQKRTVAHICGKDIII*TLWVTG
Trigger: CCCCGTAACCCAAAGGGTCAAGATGATTATGTCTTT...ACCACAGATGTGAGCTACAGTTCGTTTCTGAAAGCTACCACAAGCTGGAAACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CAA 90 bp TTAGTCCCTGCCTTAACTTCCCTTAGTAATGAATGTCTACCTAGATGTGTAAGTACCTCTCTCACCACCTaGGCTGGAATGACGGCTTCA +
Preference number: 5 (lower is better)
Translates to: LVPALTSLSNECLPRCVSTSLTT*AGMTAS
Trigger: TGAAGCCGTCATTCCAGCCAAGGTGGTGAGAGAGGT...ACTTACACATCTAGGTAGACATTCATTACTAAGGGAAGTTAAGGCAGGGACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp GTAGAAAGAACAGCTAAAATACAGAATAGAGTGCTGTGCTATACGGGACACATTATGTGGGGCCCAGGATaGCCATTCCACGAGCTATAT +
Preference number: 5 (lower is better)
Translates to: VERTAKIQNRVLCYTGHIMWGPG*PFHELY
Trigger: ATATAGCTCGTGGAATGGCAATCCTGGGCCCCACAT...AATGTGTCCCGTATAGCACAGCACTCTATTCTGTATTTTAGCTGTTCTTTCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp ATCTCAATGATAACCTGGCTCCAGCAGTTTGGCCTATGGACATCTCCTCGGGATTTTGGGTTACGGGGTTaGGTTTATTTTCTTCTTCTT +
Preference number: 5 (lower is better)
Translates to: ISMITWLQQFGLWTSPRDFGLRG*VYFLLL
Trigger: AAGAAGAAGAAAATAAACCAAACCCCGTAACCCAAA...ATCCCGAGGAGATGTCCATAGGCCAAACTGCTGGAGCCAGGTTATCATTGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp AGTATGATGGTTAAACTTGGTTGTCAACTTGACACTTGTAGGAAGAGGGAATCTTGTCTTGAGCTTTCTTaGAGGTCACGACGGGAGACG +
Preference number: 5 (lower is better)
Translates to: SMMVKLGCQLDTCRKRESCLELS*RSRRET
Trigger: CGTCTCCCGTCGTGACCTCAAAGAAAGCTCAAGACA...AGATTCCCTCTTCCTACAAGTGTCAAGTTGACAACCAAGTTTAACCATCATACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp TTGGTTGTCAACTTGACACTTGTAGGAAGAGGGAATCTCAATGATAACCTGGCTAAAGACATAATCATCTaGACCCTTTGGGTTACGGGG +
Preference number: 5 (lower is better)
Translates to: LVVNLTLVGRGNLNDNLAKDIII*TLWVTG
Trigger: CCCCGTAACCCAAAGGGTCAAGATGATTATGTCTTT...AGCCAGGTTATCATTGAGATTCCCTCTTCCTACAAGTGTCAAGTTGACAACCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp CTTCTACACAAATGTCAGCTTCCCAAGACCAAACTTGAAGCATTAGATAGAATATGTCTTGAGCTTTCTTaGAGGTCACGACGGGAGACG +
Preference number: 5 (lower is better)
Translates to: LLHKCQLPKTKLEALDRICLELS*RSRRET
Trigger: CGTCTCCCGTCGTGACCTCAAAGAAAGCTCAAGACA...TATTCTATCTAATGCTTCAAGTTTGGTCTTGGGAAGCTGACATTTGTGTAGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CAA 90 bp ATGTCCATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGACCTCTCTCACCACCTaGGCTGGAATGACGGCTTCA +
Preference number: 5 (lower is better)
Translates to: MSIHLPLDSALRFLIHRLTSLTT*AGMTAS
Trigger: TGAAGCCGTCATTCCAGCCAAGGTGGTGAGAGAGGT...CAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATGGACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS TCA 90 bp TTCTTTGTCGAGGAAATGAATGACGACTGTACTGAAGACAAAGCTTaGGAAAATTGTGAAGAGGCCAGCAATACCCAGAATGTACTTGGA +
Preference number: 5 (lower is better)
Translates to: FFVEEMNDDCTEDKA*ENCEEASNTQNVLG
Trigger: TCCAAGTACATTCTGGGTATTGCTGGCCTCTTCACAATTTTCTCAAGCTTTGTCTTCAGTACAGTCGTCATTCATTTCCTCGACAAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169196.8
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp CATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTCAGCCACAGATCTTGTaGTTGCCGGTGAACATGTTC +
Preference number: 5 (lower is better)
Translates to: HSSSTRQCIEIFNSQIACQPQIL*LPVNMF
Trigger: GAACATGTTCACCGGCAACAACAAGATCTGTGGCTG...ACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CAA 90 bp TTAGTCCCTGCCTTAACTTCCCTTAGTAATGAATGTCTACCTAGATGTGTAAGTACTCAGGGTAATCACTaGCTCAATGTCCATGCTGAT +
Preference number: 5 (lower is better)
Translates to: LVPALTSLSNECLPRCVSTQGNH*LNVHAD
Trigger: ATCAGCATGGACATTGAGCAAGTGATTACCCTGAGT...ACTTACACATCTAGGTAGACATTCATTACTAAGGGAAGTTAAGGCAGGGACTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp CTTCTACACAAATGTCAGCTTCCCAAGACCAAACTTGAAGCATTAGATAGAATAGCCAGAGAGAAACACTaGGTTCAATTCTCTTGGACA +
Preference number: 5 (lower is better)
Translates to: LLHKCQLPKTKLEALDRIAREKH*VQFSWT
Trigger: TGTCCAAGAGAATTGAACCAAGTGTTTCTCTCTGGC...TATTCTATCTAATGCTTCAAGTTTGGTCTTGGGAAGCTGACATTTGTGTAGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CAA 90 bp AGTATGATGGTTAAACTTGGTTGTCAACTTGACACTTGTAGGAAGAGGGAATCTGAGCCCACAAGATTCTaGTTAATGTTTACGTCAACC +
Preference number: 5 (lower is better)
Translates to: SMMVKLGCQLDTCRKRESEPTRF*LMFTST
Trigger: GGTTGACGTAAACATTAACAAGAATCTTGTGGGCTC...AGATTCCCTCTTCCTACAAGTGTCAAGTTGACAACCAAGTTTAACCATCATACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp ACCTTAGTCCCTGCCTTAACTTCCCTTAGTAATGAATGTCTACCTAGATGTGTATCAAAGAAAATATACTaGACAGCCAAAAGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: TLVPALTSLSNECLPRCVSKKIY*TAKRKA
Trigger: AGCCTTCCTTTTGGCTGTCAAGTATATTTTCTTTGA...TACACATCTAGGTAGACATTCATTACTAAGGGAAGTTAAGGCAGGGACTAAGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170287.8
CDS-3UTR CAA 90 bp CATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTTAGTGAGCCCACAAGATTCTaGTTAATGTTTACGTCAACC +
Preference number: 5 (lower is better)
Translates to: HLPLDSALRFLIHRLHVSEPTRF*LMFTST
Trigger: GGTTGACGTAAACATTAACAAGAATCTTGTGGGCTC...ACTAACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000169945.8
CDS-3UTR CAA 90 bp CATTCATCTTCCACTAGACAGTGCATTGAGATTTTTAATTCACAGATTGCATGTTATATAAGTCTTCATTaGTGGGACCACTGGCTTCCA +
Preference number: 5 (lower is better)
Translates to: HSSSTRQCIEIFNSQIACYISLH*WDHWLP
Trigger: TGGAAGCCAGTGGTCCCACAAATGAAGACTTATATA...ACATGCAATCTGTGAATTAAAAATCTCAATGCACTGTCTAGTGGAAGATGAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CAA 90 bp CTTCTACACAAATGTCAGCTTCCCAAGACCAAACTTGAAGCATTAGATAGAATATCAAAGAAAATATACTaGACAGCCAAAAGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: LLHKCQLPKTKLEALDRISKKIY*TAKRKA
Trigger: AGCCTTCCTTTTGGCTGTCAAGTATATTTTCTTTGA...TATTCTATCTAATGCTTCAAGTTTGGTCTTGGGAAGCTGACATTTGTGTAGAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS-3UTR CAA 90 bp ACAAAACATGAATTTAGCAAGATGACATTGGTTACAGTCACCAGCATAAAACACTTTGGGTTACGGGGTTaGGTTTATTTTCTTCTTCTT +
Preference number: 5 (lower is better)
Translates to: TKHEFSKMTLVTVTSIKHFGLRG*VYFLLL
Trigger: AAGAAGAAGAAAATAAACCAAACCCCGTAACCCAAA...GTGTTTTATGCTGGTGACTGTAACCAATGTCATCTTGCTAAATTCATGTTTTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000022176.15
CDS GCA 72 bp CTGGGCCTCGAGTCATCCCATCTGCAAGGACCCGGCTaGTGGCACCTCCACCAAGGCTTATGGCTCTGCAGC +
Preference number: 6 (lower is better)
Translates to: LGLESSHLQGPG*WHLHQGLWLCS
Trigger: GCTGCAGAGCCATAAGCCTTGGTGGAGGTGCCAGCAGCCGGGTCCTTGCAGATGGGATGACTCGAGGCCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS GCA 72 bp TGGAAGACGCACCACTGGGCCTCGAGTCATCCCATCTaGAAGGACCCGGCTGCTGGCACCTCCACCAAGGCT +
Preference number: 6 (lower is better)
Translates to: WKTHHWASSHPI*KDPAAGTSTKA
Trigger: AGCCTTGGTGGAGGTGCCAGCAGCCGGGTCCTTGCAGATGGGATGACTCGAGGCCCAGTGGTGCGTCTTCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS CCA 72 bp GGCCTCGAGTCATCCCATCTGCAAGGACCCGGCTGCTaGCACCTCCACCAAGGCTTATGGCTCTGCAGCCTC +
Preference number: 6 (lower is better)
Translates to: GLESSHLQGPGC*HLHQGLWLCSL
Trigger: GAGGCTGCAGAGCCATAAGCCTTGGTGGAGGTGCCAGCAGCCGGGTCCTTGCAGATGGGATGACTCGAGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS GCA 72 bp TGGAAGACGCACCACTGGGCCTCGAGTCATCCCATCTaGAAGGACCCGGCTGCTGGCACCTCCACCAAGCAA +
Preference number: 6 (lower is better)
Translates to: WKTHHWASSHPI*KDPAAGTSTKQ
Trigger: TTGCTTGGTGGAGGTGCCAGCAGCCGGGTCCTTGCAGATGGGATGACTCGAGGCCCAGTGGTGCGTCTTCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169202.2
CDS CCA 72 bp TTCTGCAGAGTCACAAGCACGTGGAAGACGCACCACTaGGCCTCGAGTCATCCCATCTGCAAGGACCCGGCT +
Preference number: 6 (lower is better)
Translates to: FCRVTSTWKTHH*ASSHPICKDPA
Trigger: AGCCGGGTCCTTGCAGATGGGATGACTCGAGGCCCAGTGGTGCGTCTTCCACGTGCTTGTGACTCTGCAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS TCA 72 bp GCCGAAGCAGCACATGATCTCCAGCTGGCGGACGCCTaGCATGGTGCCAACTCCAATCACAAGGCATTCCAC +
Preference number: 6 (lower is better)
Translates to: AEAAHDLQLADA*HGANSNHKAFH
Trigger: GTGGAATGCCTTGTGATTGGAGTTGGCACCATGTCAGGCGTCCGCCAGCTGGAGATCATGTGCTGCTTCGGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169196.8
ENSMUST00000170287.8
CDS TCA 72 bp AGTTGGCCAACACTGACATGCAGCCGAAGCAGCACATaGTCTCCAGCTGGCGGACGCCTGACATGGTGCCAA +
Preference number: 6 (lower is better)
Translates to: SWPTLTCSRSST*SPAGGRLTWCQ
Trigger: TTGGCACCATGTCAGGCGTCCGCCAGCTGGAGATCATGTGCTGCTTCGGCTGCATGTCAGTGTTGGCCAACT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169196.8
ENSMUST00000170287.8
CDS GCA 72 bp TCTGTTAGTGCTGGCCACAAGACAGCCTTCCGTCGTTaGCATCGGCACCTGGTACTCCTTCCCATCCAGGCA +
Preference number: 6 (lower is better)
Translates to: SVSAGHKTAFRR*HRHLVLLPIQA
Trigger: TGCCTGGATGGGAAGGAGTACCAGGTGCCGATGGCAACGACGGAAGGCTGTCTTGTGGCCAGCACTAACAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS GCA 72 bp CGTCCCCCGTCCTGGACTGGAAACGGATATAGAGGTTaGGTCCTGCCATCGTCACGTGGAGTTTCTGTAGAC +
Preference number: 6 (lower is better)
Translates to: RPPSWTGNGYRG*VLPSSRGVSVD
Trigger: GTCTACAGAAACTCCACGTGACGATGGCAGGACGCAACCTCTATATCCGTTTCCAGTCCAGGACGGGGGACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS CCA 72 bp CATCCAGGCACAGAGGCCCTGCCACTCCAACAGGGATaGGCATATATCCGATCACATTCTCACAGCAAGCTC +
Preference number: 6 (lower is better)
Translates to: HPGTEALPLQQG*AYIRSHSHSKL
Trigger: GAGCTTGCTGTGAGAATGTGATCGGATATATGCCCATCCCTGTTGGAGTGGCAGGGCCTCTGTGCCTGGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS CCA 72 bp AAGCCAGGTCTTTACTTCTGCAGAGTCACAAGCACGTaGAAGACGCACCACTGGGCCTCGAGTCATCCCATC +
Preference number: 6 (lower is better)
Translates to: KPGLYFCRVTST*KTHHWASSHPI
Trigger: GATGGGATGACTCGAGGCCCAGTGGTGCGTCTTCCACGTGCTTGTGACTCTGCAGAAGTAAAGACCTGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS TCA 72 bp GGAGGCCACGAAGAGGCCATGCATCCGGAAAAGTCTTaGCAACATTGTAGCCTCACAGTCCTTGGATCCTCG +
Preference number: 6 (lower is better)
Translates to: GGHEEAMHPEKS*QHCSLTVLGSS
Trigger: CGAGGATCCAAGGACTGTGAGGCTACAATGTTGTCAAGACTTTTCCGGATGCATGGCCTCTTCGTGGCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171537.2
CDS GCA 72 bp CTGGGCCTCGAGTCATCCCATCTGCAAGGACCCGGCTaGTGGCACCTCCACCAAGCAAGGAATAATTATAAT +
Preference number: 6 (lower is better)
Translates to: LGLESSHLQGPG*WHLHQARNNYN
Trigger: ATTATAATTATTCCTTGCTTGGTGGAGGTGCCAGCAGCCGGGTCCTTGCAGATGGGATGACTCGAGGCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169202.2
CDS CCA 72 bp GTAAGTGTCACTGTTCCCACAATAACTTCCCAGGGGTaGGAGGCCACGAAGAGGCCATGCATCCGGAAAAGT +
Preference number: 6 (lower is better)
Translates to: VSVTVPTITSQG*EATKRPCIRKS
Trigger: ACTTTTCCGGATGCATGGCCTCTTCGTGGCCTCCCACCCCTGGGAAGTTATTGTGGGAACAGTGACACTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022176.15
ENSMUST00000168855.2
ENSMUST00000169196.8
ENSMUST00000169966.2
ENSMUST00000170287.8
ENSMUST00000171537.2
CDS CCA 72 bp GGCCTCGAGTCATCCCATCTGCAAGGACCCGGCTGCTaGCACCTCCACCAAGCAAGGAATAATTATAATCTC +
Preference number: 6 (lower is better)
Translates to: GLESSHLQGPGC*HLHQARNNYNL
Trigger: GAGATTATAATTATTCCTTGCTTGGTGGAGGTGCCAGCAGCCGGGTCCTTGCAGATGGGATGACTCGAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169202.2
CDS TCA 72 bp CTCCAATCACAAGGCATTCCACAAGAGCGTCAAGAGTaGATGTGGGGCCCAGGATTGCCATTCCACGAGCTA +
Preference number: 6 (lower is better)
Translates to: LQSQGIPQERQE*MWGPGLPFHEL
Trigger: TAGCTCGTGGAATGGCAATCCTGGGCCCCACATTCACTCTTGACGCTCTTGTGGAATGCCTTGTGATTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169196.8
ENSMUST00000170287.8
CDS TCA 72 bp CTAGGACCAGCGACACACAGGCCGGGAAGAATGTCATaGACACAAAGTAGTTGGCCAACACTGACATGCAGC +
Preference number: 6 (lower is better)
Translates to: LGPATHRPGRMS*TQSSWPTLTCS
Trigger: GCTGCATGTCAGTGTTGGCCAACTACTTTGTGTTCATGACATTCTTCCCGGCCTGTGTGTCGCTGGTCCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS GCA 72 bp ATAACTTCCCAGGGGTGGGAGGCCACGAAGAGGCCATaGATCCGGAAAAGTCTTGACAACATTGTAGCCTCA +
Preference number: 6 (lower is better)
Translates to: ITSQGWEATKRP*IRKSLDNIVAS
Trigger: TGAGGCTACAATGTTGTCAAGACTTTTCCGGATGCATGGCCTCTTCGTGGCCTCCCACCCCTGGGAAGTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171537.2
CDS TCA 72 bp TGGCAGCAGGCTTCTTGTCGGTGCAATAGTTCCCACTaGCTGCCAGAATCTGCATGTCAGGAAAGAACTCCT +
Preference number: 6 (lower is better)
Translates to: WQQASCRCNSSH*LPESACQERTP
Trigger: AGGAGTTCTTTCCTGACATGCAGATTCTGGCAGTCAGTGGGAACTATTGCACCGACAAGAAGCCTGCTGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000169945.8
ENSMUST00000170287.8
CDS GCA 72 bp AAACCCTTCAGGTGTTTCAAGCCAGGTCTTTACTTCTaGAGAGTCACAAGCACGTGGAAGACGCACCACTGG +
Preference number: 6 (lower is better)
Translates to: KPFRCFKPGLYF*RVTSTWKTHHW
Trigger: CCAGTGGTGCGTCTTCCACGTGCTTGTGACTCTGCAGAAGTAAAGACCTGGCTTGAAACACCTGAAGGGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS CCA 72 bp TTCGCTCCTGGATCCTCCTCTACTGACGAAAGCTTCTaGTTCCTTCTCACAAGCAGAGGCTCACGTCTACAA +
Preference number: 6 (lower is better)
Translates to: FAPGSSSTDESF*FLLTSRGSRLQ
Trigger: TTGTAGACGTGAGCCTCTGCTTGTGAGAAGGAACCAGAAGCTTTCGTCAGTAGAGGAGGATCCAGGAGCGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS TCA 72 bp CTGACTGCCAGAATCTGCATGTCAGGAAAGAACTCCTaGAGCTTCAGCAGTGCTTTCTCCGTACCCTTAGAG +
Preference number: 6 (lower is better)
Translates to: LTARICMSGKNS*SFSSAFSVPLE
Trigger: CTCTAAGGGTACGGAGAAAGCACTGCTGAAGCTTCAGGAGTTCTTTCCTGACATGCAGATTCTGGCAGTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS GCA 72 bp AGCAGGCTTCTTGTCGGTGCAATAGTTCCCACTGACTaGCAGAATCTGCATGTCAGGAAAGAACTCCTGAAG +
Preference number: 6 (lower is better)
Translates to: SRLLVGAIVPTD*QNLHVRKELLK
Trigger: CTTCAGGAGTTCTTTCCTGACATGCAGATTCTGGCAGTCAGTGGGAACTATTGCACCGACAAGAAGCCTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS GCA 72 bp CTGCATGTCAGGAAAGAACTCCTGAAGCTTCAGCAGTaGTTTCTCCGTACCCTTAGAGATCATGTTCATGCC +
Preference number: 6 (lower is better)
Translates to: LHVRKELLKLQQ*FLRTLRDHVHA
Trigger: GGCATGAACATGATCTCTAAGGGTACGGAGAAAGCACTGCTGAAGCTTCAGGAGTTCTTTCCTGACATGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS GCA 72 bp AGCAGGCTTCTTGTCGGTGCAATAGTTCCCACTGACTaGCAGAATCTGCATGTCAGGAAAGAACTCCTGAAN +
Preference number: 6 (lower is better)
Translates to: SRLLVGAIVPTD*QNLHVRKELLX
Trigger: NTTCAGGAGTTCTTTCCTGACATGCAGATTCTGGCAGTCAGTGGGAACTATTGCACCGACAAGAAGCCTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169945.8
CDS CCA 72 bp ATTCTCCAGTATCTGCAGACATTCTTCATTAGGTCGTaGCTCGATGGGGAGTTCAATTCCAGGCTCCTGTGT +
Preference number: 6 (lower is better)
Translates to: ILQYLQTFFIRS*LDGEFNSRLLC
Trigger: ACACAGGAGCCTGGAATTGAACTCCCCATCGAGCCACGACCTAATGAAGAATGTCTGCAGATACTGGAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS CCA 72 bp TCGTCACGTGGAGTTTCTGTAGACGAGCAAATCTGCTaGTGCTATCAAAGGCCTCCTTTATCACTGCAAACC +
Preference number: 6 (lower is better)
Translates to: SSRGVSVDEQIC*CYQRPPLSLQT
Trigger: GGTTTGCAGTGATAAAGGAGGCCTTTGATAGCACCAGCAGATTTGCTCGTCTACAGAAACTCCACGTGACGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS GCA 72 bp TCTTCTTCTTCTAAAACTCTGGCAAAATGGCTGAGCTaGCAAATTGGACGACCCTCACGGCTTTCACGAGAA +
Preference number: 6 (lower is better)
Translates to: SSSSKTLAKWLS*QIGRPSRLSRE
Trigger: TTCTCGTGAAAGCCGTGAGGGTCGTCCAATTTGGCAGCTCAGCCATTTTGCCAGAGTTTTAGAAGAAGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS GCA 72 bp AAATCTGCTGGTGCTATCAAAGGCCTCCTTTATCACTaGAAACCCTTCAGGTGTTTCAAGCCAGGTCTTTAC +
Preference number: 6 (lower is better)
Translates to: KSAGAIKGLLYH*KPFRCFKPGLY
Trigger: GTAAAGACCTGGCTTGAAACACCTGAAGGGTTTGCAGTGATAAAGGAGGCCTTTGATAGCACCAGCAGATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169202.2
ENSMUST00000170287.8
CDS CAA 90 bp AATGACAGTGTCGATTCTGTCTCTGCTTGTTCAAAGAAAATATACTaGACAGCCAAAAGGAAGGCTAAACTCAGGGTAATCACTTGCTCA +
Preference number: 6 (lower is better)
Translates to: NDSVDSVSACSKKIY*TAKRKAKLRVITCS
Trigger: TGAGCAAGTGATTACCCTGAGTTTAGCCTTCCTTTTGGCTGTCAAGTATATTTTCTTTGAACAAGCAGAGACAGAATCGACACTGTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8
CDS TCA 72 bp GCTTCATTTAAGCCTGTCAGTTCTTTGTCGAGGAAATaGATGACGACTGTACTGAAGACAAAGCTTGAGAAA +
Preference number: 6 (lower is better)
Translates to: ASFKPVSSLSRK*MTTVLKTKLEK
Trigger: TTTCTCAAGCTTTGTCTTCAGTACAGTCGTCATTCATTTCCTCGACAAAGAACTGACAGGCTTAAATGAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022176.15
ENSMUST00000169196.8
ENSMUST00000170287.8
CDS CCA 72 bp AGGACCAAGCCTAAAGACATAATCATCTTGACCCTTTaGGTTACGGGGTTTGGTTTATTTTCTTCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: RTKPKDIIILTL*VTGFGLFSSSS
Trigger: AGAAGAAGAAGAAAATAAACCAAACCCCGTAACCCAAAGGGTCAAGATGATTATGTCTTTAGGCTTGGTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022176.15
ENSMUST00000170287.8