Pregenerated sensors for HMGCL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028672Ensembl transcript IDs: ENSMUST00000030432.8
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAACTGCTCTCTGTCCTCAGAGGTAGAACAAAGGCCCTGCGGCGGTaGACATCAGCTCTGTTGGCAGGCAGACTCACCCAGGGCCATCCC | + |
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Preference number: 1 (lower is better) Translates to: KLLSVLRGRTKALRR*TSALLAGRLTQGHP Trigger: GGGATGGCCCTGGGTGAGTCTGCCTGCCAACAGAGCTGATGTCCACCGCCGCAGGGCCTTTGTTCTACCTCTGAGGACAGAGAGCAGTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| 3UTR GCA 90 bp | AACCCCCACCATTCCAGCAAATGCTCTGCTGGCATAAGGGGAAACTaGTCTCTGTCCTCAGAGGTAGAACAAAGGCCCTGCGGCGGTGGA | + |
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Preference number: 1 (lower is better) Translates to: NPHHSSKCSAGIRGN*SLSSEVEQRPCGGG Trigger: TCCACCGCCGCAGGGCCTTTGTTCTACCTCTGAGGACAGAGAGCAGTTTCCCCTTATGCCAGCAGAGCATTTGCTGGAATGGTGGGGGTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| 3UTR TCA 90 bp | AGGCCAGGCAGCTCTAGCCCTTATCATCAGGGACAGGGACCTCTGTaGTGCCGGCTCATTTGCTCTCATTCCATCTCTTCATCCAGGAAT | + |
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Preference number: 1 (lower is better) Translates to: RPGSSSPYHQGQGPL*CRLICSHSISSSRN Trigger: ATTCCTGGATGAAGAGATGGAATGAGAGCAAATGAGCCGGCATCACAGAGGTCCCTGTCCCTGATGATAAGGGCTAGAGCTGCCTGGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGATGACCACAGATGCAGATCAACCCCCACCATTCCAGCAAATGCTCTGCTGGGACAGGGACCTCTGTaGTGCCGGCTCATTTGCTCT | + |
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Preference number: 2 (lower is better) Translates to: ADDHRCRSTPTIPANALLGQGPL*CRLICS Trigger: AGAGCAAATGAGCCGGCATCACAGAGGTCCCTGTCC...CAGCAGAGCATTTGCTGGAATGGTGGGGGTTGATCTGCATCTGTGGTCATCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| 3UTR CCA 72 bp | GAACAAAGGCCCTGCGGCGGTGGACATCAGCTCTGTTaGCAGGCAGACTCACCCAGGGCCATCCCAAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: EQRPCGGGHQLC*QADSPRAIPSK Trigger: CTTGCTTGGGATGGCCCTGGGTGAGTCTGCCTGCCAACAGAGCTGATGTCCACCGCCGCAGGGCCTTTGTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| 3UTR CCA 72 bp | ATCCCAAGCAAGTGCTTAGGCACAGCTCTGGGGAGCTaGCCCAGGCCAGGCAGCTCTAGCCCTTATCATCAG | + |
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Preference number: 3 (lower is better) Translates to: IPSKCLGTALGS*PRPGSSSPYHQ Trigger: CTGATGATAAGGGCTAGAGCTGCCTGGCCTGGGCCAGCTCCCCAGAGCTGTGCCTAAGCACTTGCTTGGGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| 3UTR-3UTR CAA 90 bp | AGGGGAAACTGCTCTCTGTCCTCAGAGGTAGAACAAAGGCCCTGCGGCGGTGGAGTGATGCCGGCTCATTaGCTCTCATTCCATCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: RGNCSLSSEVEQRPCGGGVMPAH*LSFHLF Trigger: GAAGAGATGGAATGAGAGCAAATGAGCCGGCATCAC...TCCACCGCCGCAGGGCCTTTGTTCTACCTCTGAGGACAGAGAGCAGTTTCCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| 3UTR GCA 72 bp | CCACAGATGCAGATCAACCCCCACCATTCCAGCAAATaGTCTGCTGGCATAAGGGGAAACTGCTCTCTGTCC | + |
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Preference number: 3 (lower is better) Translates to: PQMQINPHHSSK*SAGIRGNCSLS Trigger: GGACAGAGAGCAGTTTCCCCTTATGCCAGCAGAGCATTTGCTGGAATGGTGGGGGTTGATCTGCATCTGTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| 3UTR CCA 72 bp | GCAGATCAACCCCCACCATTCCAGCAAATGCTCTGCTaGCATAAGGGGAAACTGCTCTCTGTCCTCAGAGGT | + |
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Preference number: 3 (lower is better) Translates to: ADQPPPFQQMLC*HKGKLLSVLRG Trigger: ACCTCTGAGGACAGAGAGCAGTTTCCCCTTATGCCAGCAGAGCATTTGCTGGAATGGTGGGGGTTGATCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| 3UTR GCA 72 bp | CATTCCAGCAAATGCTCTGCTGGCATAAGGGGAAACTaGTCTCTGTCCTCAGAGGTAGAACAAAGGCCCTGC | + |
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Preference number: 3 (lower is better) Translates to: HSSKCSAGIRGN*SLSSEVEQRPC Trigger: GCAGGGCCTTTGTTCTACCTCTGAGGACAGAGAGCAGTTTCCCCTTATGCCAGCAGAGCATTTGCTGGAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| 3UTR GCA 72 bp | CACAGAGTGGAGATTTCGTTGGCAGATGACCACAGATaGAGATCAACCCCCACCATTCCAGCAAATGCTCTG | + |
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Preference number: 3 (lower is better) Translates to: HRVEISLADDHR*RSTPTIPANAL Trigger: CAGAGCATTTGCTGGAATGGTGGGGGTTGATCTGCATCTGTGGTCATCTGCCAACGAAATCTCCACTCTGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR GCA 90 bp | TCTCTGTCCTCAGAGGTAGAACAAAGGCCCTGCGGCGGTGGACATCAGCTCTGTTGCCCATGGAGGAGGTaGTCACAGCCCGGAGGGACG | + |
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Preference number: 4 (lower is better) Translates to: SLSSEVEQRPCGGGHQLCCPWRR*SQPGGT Trigger: CGTCCCTCCGGGCTGTGAGCACCTCCTCCATGGGCA...ACAGAGCTGATGTCCACCGCCGCAGGGCCTTTGTTCTACCTCTGAGGACAGAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| 3UTR CAA 72 bp | AGAACAAAGGCCCTGCGGCGGTGGACATCAGCTCTGTaGGCAGGCAGACTCACCCAGGGCCATCCCAAGCAA | + |
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Preference number: 4 (lower is better) Translates to: RTKALRRWTSAL*AGRLTQGHPKQ Trigger: TTGCTTGGGATGGCCCTGGGTGAGTCTGCCTGCCAACAGAGCTGATGTCCACCGCCGCAGGGCCTTTGTTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR TCA 90 bp | GCGGCGGTGGACATCAGCTCTGTTGGCAGGCAGACTCACCCAGGGCCATCCCAACAGGCACTTCATGCATaGCAGCAGTCAGCATGTCTT | + |
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Preference number: 4 (lower is better) Translates to: AAVDISSVGRQTHPGPSQQALHA*QQSACL Trigger: AAGACATGCTGACTGCTGTCATGCATGAAGTGCCTG...TTGGGATGGCCCTGGGTGAGTCTGCCTGCCAACAGAGCTGATGTCCACCGCCGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR GCA 90 bp | CAGCTCTGTTGGCAGGCAGACTCACCCAGGGCCATCCCAAGCAAGTGCTTAGGCCCTGCTTTGGCAAAGTaGCCATGGAGGAGGTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: QLCWQADSPRAIPSKCLGPALAK*PWRRCS Trigger: TGAGCACCTCCTCCATGGGCACTTTGCCAAAGCAGG...GCCTAAGCACTTGCTTGGGATGGCCCTGGGTGAGTCTGCCTGCCAACAGAGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR GCA 90 bp | CAGCTCTGTTGGCAGGCAGACTCACCCAGGGCCATCCCAAGCAAGTGCTTAGGCACAGCCTCCAAGTCCTaGCACAGAGGAGTCCACAAC | + |
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Preference number: 4 (lower is better) Translates to: QLCWQADSPRAIPSKCLGTASKS*HRGVHN Trigger: GTTGTGGACTCCTCTGTGGCAGGACTTGGAGGCTGT...GCCTAAGCACTTGCTTGGGATGGCCCTGGGTGAGTCTGCCTGCCAACAGAGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CCA 90 bp | GACAGGGACCTCTGTGATGCCGGCTCATTTGCTCTCATTCCATCTCTTCATCCACTCTCACAGAGATGCTaGCGGCCTGGGCCGCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: DRDLCDAGSFALIPSLHPLSQRC*RPGPPA Trigger: TGCAGGCGGCCCAGGCCGCCAGCATCTCTGTGAGAG...TGGATGAAGAGATGGAATGAGAGCAAATGAGCCGGCATCACAGAGGTCCCTGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR GCA 90 bp | AGGGGAAACTGCTCTCTGTCCTCAGAGGTAGAACAAAGGCCCTGCGGCGGTGGAGCAGTGGACAGCCAATaGTGTCACAGGCACTTCATG | + |
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Preference number: 4 (lower is better) Translates to: RGNCSLSSEVEQRPCGGGAVDSQ*CHRHFM Trigger: CATGAAGTGCCTGTGACAGCATTGGCTGTCCACTGC...TCCACCGCCGCAGGGCCTTTGTTCTACCTCTGAGGACAGAGAGCAGTTTCCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CCA 90 bp | GGAAACTGCTCTCTGTCCTCAGAGGTAGAACAAAGGCCCTGCGGCGGTGGACATGTGGTCAGCCATCTGTaGCACCCACTTGGGAGAAAC | + |
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Preference number: 4 (lower is better) Translates to: GNCSLSSEVEQRPCGGGHVVSHL*HPLGRN Trigger: GTTTCTCCCAAGTGGGTGCCACAGATGGCTGACCAC...ATGTCCACCGCCGCAGGGCCTTTGTTCTACCTCTGAGGACAGAGAGCAGTTTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR GCA 90 bp | GGTGGACATCAGCTCTGTTGGCAGGCAGACTCACCCAGGGCCATCCCAAGCAAGCGGGAAACTTCTGAATaGCCTTCAAGACGTCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: GGHQLCWQADSPRAIPSKRETSE*PSRRQS Trigger: ACTCTGACGTCTTGAAGGGCATTCAGAAGTTTCCCG...CTTGCTTGGGATGGCCCTGGGTGAGTCTGCCTGCCAACAGAGCTGATGTCCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CCA 90 bp | GCAGATGACCACAGATGCAGATCAACCCCCACCATTCCAGCAAATGCTCTGCTGTTGGCAAAGTGCCCATaGAGGAGGTGCTCACAGCCC | + |
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Preference number: 4 (lower is better) Translates to: ADDHRCRSTPTIPANALLLAKCP*RRCSQP Trigger: GGGCTGTGAGCACCTCCTCCATGGGCACTTTGCCAA...CAGCAGAGCATTTGCTGGAATGGTGGGGGTTGATCTGCATCTGTGGTCATCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CCA 90 bp | GGTGGACATCAGCTCTGTTGGCAGGCAGACTCACCCAGGGCCATCCCAAGCAAGACTCCAGCAAAGCGCTaGAAACTCTCCTCTATAGAG | + |
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Preference number: 4 (lower is better) Translates to: GGHQLCWQADSPRAIPSKTPAKR*KLSSIE Trigger: CTCTATAGAGGAGAGTTTCCAGCGCTTTGCTGGAGT...CTTGCTTGGGATGGCCCTGGGTGAGTCTGCCTGCCAACAGAGCTGATGTCCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR GCA 90 bp | GAGTGGAGATTTCGTTGGCAGATGACCACAGATGCAGATCAACCCCCACCATTCACACTCACACCCATCTaGAGGGCCACCAAGGTGTTG | + |
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Preference number: 4 (lower is better) Translates to: EWRFRWQMTTDADQPPPFTLTPI*RATKVL Trigger: CAACACCTTGGTGGCCCTGCAGATGGGTGTGAGTGT...GAATGGTGGGGGTTGATCTGCATCTGTGGTCATCTGCCAACGAAATCTCCACTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CCA 90 bp | CAGCTCTGTTGGCAGGCAGACTCACCCAGGGCCATCCCAAGCAAGTGCTTAGGCAAAGCCTTTCATGTTTaGAGTCAGGACTGGGTAGTT | + |
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Preference number: 4 (lower is better) Translates to: QLCWQADSPRAIPSKCLGKAFHV*SQDWVV Trigger: AACTACCCAGTCCTGACTCCAAACATGAAAGGCTTT...GCCTAAGCACTTGCTTGGGATGGCCCTGGGTGAGTCTGCCTGCCAACAGAGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CCA 90 bp | CTCATTCCATCTCTTCATCCAGGAATCATTGTATACACCCAATTCCCTCCGTTCGAGATGCTGGCGGCCTaGGCCGCCTGCATGACTCCA | + |
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Preference number: 4 (lower is better) Translates to: LIPSLHPGIIVYTQFPPFEMLAA*AACMTP Trigger: TGGAGTCATGCAGGCGGCCCAGGCCGCCAGCATCTC...GAACGGAGGGAATTGGGTGTATACAATGATTCCTGGATGAAGAGATGGAATGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CCA 90 bp | GACCTCTGTGATGCCGGCTCATTTGCTCTCATTCCATCTCTTCATCCAGGAATCGGGCCACCAAGGTGTTaGCCAGAGCTTGACCATAGG | + |
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Preference number: 4 (lower is better) Translates to: DLCDAGSFALIPSLHPGIGPPRC*PELDHR Trigger: CCTATGGTCAAGCTCTGGCCAACACCTTGGTGGCCC...GATTCCTGGATGAAGAGATGGAATGAGAGCAAATGAGCCGGCATCACAGAGGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR GCA 90 bp | GCAGATGACCACAGATGCAGATCAACCCCCACCATTCCAGCAAATGCTCTGCTGTCCACGATCTTCACCTaGTTTGGCAAAGTGCCCATG | + |
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Preference number: 4 (lower is better) Translates to: ADDHRCRSTPTIPANALLSTIFT*FGKVPM Trigger: CATGGGCACTTTGCCAAAGCAGGTGAAGATCGTGGA...CAGCAGAGCATTTGCTGGAATGGTGGGGGTTGATCTGCATCTGTGGTCATCTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR TCA 90 bp | GAGTGGAGATTTCGTTGGCAGATGACCACAGATGCAGATCAACCCCCACCATTCATGCCGGGAAACTTCTaGATGCCCTTCAAGACGTCA | + |
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Preference number: 4 (lower is better) Translates to: EWRFRWQMTTDADQPPPFMPGNF*MPFKTS Trigger: TGACGTCTTGAAGGGCATTCAGAAGTTTCCCGGCAT...GAATGGTGGGGGTTGATCTGCATCTGTGGTCATCTGCCAACGAAATCTCCACTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CCA 90 bp | GACCTCTGTGATGCCGGCTCATTTGCTCTCATTCCATCTCTTCATCCAGGAATCTTCAAGACGTCAGAGTaGTCAGCCATCTGTGGCACC | + |
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Preference number: 4 (lower is better) Translates to: DLCDAGSFALIPSLHPGIFKTSE*SAICGT Trigger: GGTGCCACAGATGGCTGACCACTCTGACGTCTTGAA...GATTCCTGGATGAAGAGATGGAATGAGAGCAAATGAGCCGGCATCACAGAGGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR GCA 90 bp | ATCACACACAGAGTGGAGATTTCGTTGGCAGATGACCACAGATGCAGATCAACCATACTCTTTTCATTCTaGAGCCCATCTCGGGGACCG | + |
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Preference number: 4 (lower is better) Translates to: ITHRVEISLADDHRCRSTILFSF*SPSRGP Trigger: CGGTCCCCGAGATGGGCTGCAGAATGAAAAGAGTAT...GGTTGATCTGCATCTGTGGTCATCTGCCAACGAAATCTCCACTCTGTGTGTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR TCA 90 bp | CTCATTCCATCTCTTCATCCAGGAATCATTGTATACACCCAATTCCCTCCGTTCTTTCTGTTAAGGGCTTaGCAGATGAAGTCCCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LIPSLHPGIIVYTQFPPFFLLRA*QMKSPA Trigger: AGCTGGGGACTTCATCTGTCAAGCCCTTAACAGAAA...GAACGGAGGGAATTGGGTGTATACAATGATTCCTGGATGAAGAGATGGAATGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR GCA 90 bp | AAAATCACACACAGAGTGGAGATTTCGTTGGCAGATGACCACAGATGCAGATCACTTGCAGGTGGCCTGTaGCACTTTGGAACTAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: KITHRVEISLADDHRCRSLAGGL*HFGTSF Trigger: AAAACTAGTTCCAAAGTGGCACAGGCCACCTGCAAG...TGATCTGCATCTGTGGTCATCTGCCAACGAAATCTCCACTCTGTGTGTGATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CCA 90 bp | CTGCAGCCCATCTCGGGGACCGACTTCCACGATCTTCACCTGCTTTaGCAAAGTGCCCATGGAGGAGGTGCTCACAGCCCGGAGGGACGT | + |
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Preference number: 5 (lower is better) Translates to: LQPISGTDFHDLHLL*QSAHGGGAHSPEGR Trigger: ACGTCCCTCCGGGCTGTGAGCACCTCCTCCATGGGCACTTTGCCAAAGCAGGTGAAGATCGTGGAAGTCGGTCCCCGAGATGGGCTGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CCA 90 bp | CCGAGGGCACAGGAGACATACCCTCTCACAGAGATGCTGGCGGCCTaGGCCGCCTGCATGACTCCAGCAAAGCGCTGGAAACTCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: PRAQETYPLTEMLAA*AACMTPAKRWKLSS Trigger: AGAGGAGAGTTTCCAGCGCTTTGCTGGAGTCATGCAGGCGGCCCAGGCCGCCAGCATCTCTGTGAGAGGGTATGTCTCCTGTGCCCTCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CCA 90 bp | GAGATGCTGGCGGCCTGGGCCGCCTGCATGACTCCAGCAAAGCGCTaGAAACTCTCCTCTATAGAGCAGTTCGCGTTCTTCCGGGTGAAG | + |
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Preference number: 5 (lower is better) Translates to: EMLAAWAACMTPAKR*KLSSIEQFAFFRVK Trigger: CTTCACCCGGAAGAACGCGAACTGCTCTATAGAGGAGAGTTTCCAGCGCTTTGCTGGAGTCATGCAGGCGGCCCAGGCCGCCAGCATCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CAA 90 bp | GCGGCGGTGGACATCAGCTCTGTTGGCAGGCAGACTCACCCAGGGCCATCCCAAGGTGTTGGCCAGAGCTaGACCATAGGTATCATGGCA | + |
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Preference number: 5 (lower is better) Translates to: AAVDISSVGRQTHPGPSQGVGQS*TIGIMA Trigger: TGCCATGATACCTATGGTCAAGCTCTGGCCAACACC...TTGGGATGGCCCTGGGTGAGTCTGCCTGCCAACAGAGCTGATGTCCACCGCCGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS GCA 90 bp | CCACTTGGGAGAAACAAAGCTGGTGGCCTCGATCACGGGGAGCCCTaGTTCGGAAAGCATGTCGATCAGCCTGATCTTCACTGGGGTGGG | + |
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Preference number: 5 (lower is better) Translates to: PLGRNKAGGLDHGEP*FGKHVDQPDLHWGG Trigger: CCCACCCCAGTGAAGATCAGGCTGATCGACATGCTTTCCGAAGCAGGGCTCCCCGTGATCGAGGCCACCAGCTTTGTTTCTCCCAAGTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS GCA 90 bp | CAGGAGACATACCCTCTCACAGAGATGCTGGCGGCCTGGGCCGCCTaGATGACTCCAGCAAAGCGCTGGAAACTCTCCTCTATAGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: QETYPLTEMLAAWAA*MTPAKRWKLSSIEQ Trigger: CTGCTCTATAGAGGAGAGTTTCCAGCGCTTTGCTGGAGTCATGCAGGCGGCCCAGGCCGCCAGCATCTCTGTGAGAGGGTATGTCTCCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CAA 90 bp | TGGCAGGCAGACTCACCCAGGGCCATCCCAAGCAAGTGCTTAGGCACAGCTCTGCGATCTTCACCTGCTTaGGCAAAGTGCCCATGGAGG | + |
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Preference number: 5 (lower is better) Translates to: WQADSPRAIPSKCLGTALRSSPA*AKCPWR Trigger: CCTCCATGGGCACTTTGCCAAAGCAGGTGAAGATCG...CAGAGCTGTGCCTAAGCACTTGCTTGGGATGGCCCTGGGTGAGTCTGCCTGCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CCA 90 bp | AGTGGTCAGCCATCTGTGGCACCCACTTGGGAGAAACAAAGCTGGTaGCCTCGATCACGGGGAGCCCTGCTTCGGAAAGCATGTCGATCA | + |
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Preference number: 5 (lower is better) Translates to: SGQPSVAPTWEKQSW*PRSRGALLRKACRS Trigger: TGATCGACATGCTTTCCGAAGCAGGGCTCCCCGTGATCGAGGCCACCAGCTTTGTTTCTCCCAAGTGGGTGCCACAGATGGCTGACCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CCA 90 bp | AGGAGTCCACAACACTCACACCCATCTGCAGGGCCACCAAGGTGTTaGCCAGAGCTTGACCATAGGTATCATGGCAGTGGACAGCCAATG | + |
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Preference number: 5 (lower is better) Translates to: RSPQHSHPSAGPPRC*PELDHRYHGSGQPM Trigger: CATTGGCTGTCCACTGCCATGATACCTATGGTCAAGCTCTGGCCAACACCTTGGTGGCCCTGCAGATGGGTGTGAGTGTTGTGGACTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CAA 90 bp | GGTGGACATCAGCTCTGTTGGCAGGCAGACTCACCCAGGGCCATCCCAAGCAAGCAAAGCCTTTCATGTTaGGAGTCAGGACTGGGTAGT | + |
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Preference number: 5 (lower is better) Translates to: GGHQLCWQADSPRAIPSKQSLSC*ESGLGS Trigger: ACTACCCAGTCCTGACTCCAAACATGAAAGGCTTTG...CTTGCTTGGGATGGCCCTGGGTGAGTCTGCCTGCCAACAGAGCTGATGTCCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS GCA 90 bp | GTTGGCCAGAGCTTGACCATAGGTATCATGGCAGTGGACAGCCAATaGTGTCACAGGCACTTCATGCATGACAGCAGTCAGCATGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: VGQSLTIGIMAVDSQ*CHRHFMHDSSQHVF Trigger: AAAGACATGCTGACTGCTGTCATGCATGAAGTGCCTGTGACAGCATTGGCTGTCCACTGCCATGATACCTATGGTCAAGCTCTGGCCAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CAA 90 bp | GACCTCTGTGATGCCGGCTCATTTGCTCTCATTCCATCTCTTCATCCAGGAATCATCTGTGGCACCCACTaGGGAGAAACAAAGCTGGTG | + |
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Preference number: 5 (lower is better) Translates to: DLCDAGSFALIPSLHPGIICGTH*GETKLV Trigger: CACCAGCTTTGTTTCTCCCAAGTGGGTGCCACAGAT...GATTCCTGGATGAAGAGATGGAATGAGAGCAAATGAGCCGGCATCACAGAGGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CAA 90 bp | TCTCTGTCCTCAGAGGTAGAACAAAGGCCCTGCGGCGGTGGACATCAGCTCTGTATCGAGTACAACTTCTaGGCAACCTCAGCAACTTTA | + |
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Preference number: 5 (lower is better) Translates to: SLSSEVEQRPCGGGHQLCIEYNF*ATSATL Trigger: TAAAGTTGCTGAGGTTGCCAAGAAGTTGTACTCGAT...ACAGAGCTGATGTCCACCGCCGCAGGGCCTTTGTTCTACCTCTGAGGACAGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CAA 90 bp | ATCACACACAGAGTGGAGATTTCGTTGGCAGATGACCACAGATGCAGATCAACCTCCCTGATGCCCCTTTaGCATAGGGACAGCCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: ITHRVEISLADDHRCRSTSLMPL*HRDSLQ Trigger: TTGGAGGCTGTCCCTATGCAAAAGGGGCATCAGGGA...GGTTGATCTGCATCTGTGGTCATCTGCCAACGAAATCTCCACTCTGTGTGTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS TCA 90 bp | CAGGTGGCCTGTGCCACTTTGGAACTAGTTTTTCTGTTAAGGGCTTaGCAGATGAAGTCCCCAGCTTCTAGAAGTTTCTGGAGGTTCACA | + |
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Preference number: 5 (lower is better) Translates to: QVACATLELVFLLRA*QMKSPASRSFWRFT Trigger: TGTGAACCTCCAGAAACTTCTAGAAGCTGGGGACTTCATCTGTCAAGCCCTTAACAGAAAAACTAGTTCCAAAGTGGCACAGGCCACCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CAA 90 bp | CTCATTCCATCTCTTCATCCAGGAATCATTGTATACACCCAATTCCCTCCGTTCTTTTCTGTTAAGGGCTaGACAGATGAAGTCCCCAGC | + |
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Preference number: 5 (lower is better) Translates to: LIPSLHPGIIVYTQFPPFFSVKG*TDEVPS Trigger: GCTGGGGACTTCATCTGTCAAGCCCTTAACAGAAAA...GAACGGAGGGAATTGGGTGTATACAATGATTCCTGGATGAAGAGATGGAATGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS-3UTR CAA 90 bp | AAAATCACACACAGAGTGGAGATTTCGTTGGCAGATGACCACAGATGCAGATCAGTGGCCTGTGCCACTTaGGAACTAGTTTTTCTGTTA | + |
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Preference number: 5 (lower is better) Translates to: KITHRVEISLADDHRCRSVACAT*ELVFLL Trigger: TAACAGAAAAACTAGTTCCAAAGTGGCACAGGCCAC...TGATCTGCATCTGTGGTCATCTGCCAACGAAATCTCCACTCTGTGTGTGATTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS GCA 72 bp | GACCGACTTCCACGATCTTCACCTGCTTTGGCAAAGTaGCCATGGAGGAGGTGCTCACAGCCCGGAGGGACG | + |
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Preference number: 6 (lower is better) Translates to: DRLPRSSPALAK*PWRRCSQPGGT Trigger: CGTCCCTCCGGGCTGTGAGCACCTCCTCCATGGGCACTTTGCCAAAGCAGGTGAAGATCGTGGAAGTCGGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS GCA 72 bp | TACCCTCTCACAGAGATGCTGGCGGCCTGGGCCGCCTaGATGACTCCAGCAAAGCGCTGGAAACTCTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: YPLTEMLAAWAA*MTPAKRWKLSS Trigger: AGAGGAGAGTTTCCAGCGCTTTGCTGGAGTCATGCAGGCGGCCCAGGCCGCCAGCATCTCTGTGAGAGGGTA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CCA 72 bp | ATCTCGGGGACCGACTTCCACGATCTTCACCTGCTTTaGCAAAGTGCCCATGGAGGAGGTGCTCACAGCCCG | + |
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Preference number: 6 (lower is better) Translates to: ISGTDFHDLHLL*QSAHGGGAHSP Trigger: CGGGCTGTGAGCACCTCCTCCATGGGCACTTTGCCAAAGCAGGTGAAGATCGTGGAAGTCGGTCCCCGAGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CCA 72 bp | CCATCTGTGGCACCCACTTGGGAGAAACAAAGCTGGTaGCCTCGATCACGGGGAGCCCTGCTTCGGAAAGCA | + |
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Preference number: 6 (lower is better) Translates to: PSVAPTWEKQSW*PRSRGALLRKA Trigger: TGCTTTCCGAAGCAGGGCTCCCCGTGATCGAGGCCACCAGCTTTGTTTCTCCCAAGTGGGTGCCACAGATGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CCA 72 bp | CAGCCATCTGTGGCACCCACTTGGGAGAAACAAAGCTaGTGGCCTCGATCACGGGGAGCCCTGCTTCGGAAA | + |
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Preference number: 6 (lower is better) Translates to: QPSVAPTWEKQS*WPRSRGALLRK Trigger: TTTCCGAAGCAGGGCTCCCCGTGATCGAGGCCACCAGCTTTGTTTCTCCCAAGTGGGTGCCACAGATGGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CCA 72 bp | GCGGCCTGGGCCGCCTGCATGACTCCAGCAAAGCGCTaGAAACTCTCCTCTATAGAGCAGTTCGCGTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: AAWAACMTPAKR*KLSSIEQFAFF Trigger: GAAGAACGCGAACTGCTCTATAGAGGAGAGTTTCCAGCGCTTTGCTGGAGTCATGCAGGCGGCCCAGGCCGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS GCA 72 bp | AGCCCATCTCGGGGACCGACTTCCACGATCTTCACCTaGTTTGGCAAAGTGCCCATGGAGGAGGTGCTCACA | + |
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Preference number: 6 (lower is better) Translates to: SPSRGPTSTIFT*FGKVPMEEVLT Trigger: TGTGAGCACCTCCTCCATGGGCACTTTGCCAAAGCAGGTGAAGATCGTGGAAGTCGGTCCCCGAGATGGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CAA 72 bp | AAGACGTCAGAGTGGTCAGCCATCTGTGGCACCCACTaGGGAGAAACAAAGCTGGTGGCCTCGATCACGGGG | + |
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Preference number: 6 (lower is better) Translates to: KTSEWSAICGTH*GETKLVASITG Trigger: CCCCGTGATCGAGGCCACCAGCTTTGTTTCTCCCAAGTGGGTGCCACAGATGGCTGACCACTCTGACGTCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CAA 72 bp | ACCCATCTGCAGGGCCACCAAGGTGTTGGCCAGAGCTaGACCATAGGTATCATGGCAGTGGACAGCCAATGC | + |
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Preference number: 6 (lower is better) Translates to: THLQGHQGVGQS*TIGIMAVDSQC Trigger: GCATTGGCTGTCCACTGCCATGATACCTATGGTCAAGCTCTGGCCAACACCTTGGTGGCCCTGCAGATGGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CAA 90 bp | TTCCGGGTGAAGAGCTCAGACACAGCACCGAAGACGCTCACTTCCTaGGCACCCGCAGCTACCGCTTCCTCAAAGCCTTTCATGTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: FRVKSSDTAPKTLTS*APAATASSKPFMFG Trigger: TCCAAACATGAAAGGCTTTGAGGAAGCGGTAGCTGCGGGTGCCAAGGAAGTGAGCGTCTTCGGTGCTGTGTCTGAGCTCTTCACCCGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CAA 90 bp | AACACTCACACCCATCTGCAGGGCCACCAAGGTGTTGGCCAGAGCTaGACCATAGGTATCATGGCAGTGGACAGCCAATGCTGTCACAGG | + |
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Preference number: 6 (lower is better) Translates to: NTHTHLQGHQGVGQS*TIGIMAVDSQCCHR Trigger: CCTGTGACAGCATTGGCTGTCCACTGCCATGATACCTATGGTCAAGCTCTGGCCAACACCTTGGTGGCCCTGCAGATGGGTGTGAGTGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS GCA 72 bp | AGAAACAAAGCTGGTGGCCTCGATCACGGGGAGCCCTaGTTCGGAAAGCATGTCGATCAGCCTGATCTTCAC | + |
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Preference number: 6 (lower is better) Translates to: RNKAGGLDHGEP*FGKHVDQPDLH Trigger: GTGAAGATCAGGCTGATCGACATGCTTTCCGAAGCAGGGCTCCCCGTGATCGAGGCCACCAGCTTTGTTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CCA 72 bp | CAACACTCACACCCATCTGCAGGGCCACCAAGGTGTTaGCCAGAGCTTGACCATAGGTATCATGGCAGTGGA | + |
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Preference number: 6 (lower is better) Translates to: QHSHPSAGPPRC*PELDHRYHGSG Trigger: TCCACTGCCATGATACCTATGGTCAAGCTCTGGCCAACACCTTGGTGGCCCTGCAGATGGGTGTGAGTGTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS CCA 72 bp | ATGCATGACAGCAGTCAGCATGTCTTTCATGAGTCCTaGGGTACCTACGCCGATGGTGTCCCCAAGGGAGAT | + |
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Preference number: 6 (lower is better) Translates to: MHDSSQHVFHES*GTYADGVPKGD Trigger: ATCTCCCTTGGGGACACCATCGGCGTAGGTACCCCAGGACTCATGAAAGACATGCTGACTGCTGTCATGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS GCA 72 bp | AGCTTGACCATAGGTATCATGGCAGTGGACAGCCAATaGTGTCACAGGCACTTCATGCATGACAGCAGTCAG | + |
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Preference number: 6 (lower is better) Translates to: SLTIGIMAVDSQ*CHRHFMHDSSQ Trigger: CTGACTGCTGTCATGCATGAAGTGCCTGTGACAGCATTGGCTGTCCACTGCCATGATACCTATGGTCAAGCT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS TCA 72 bp | CAAAGCCTTTCATGTTTGGAGTCAGGACTGGGTAGTTaGTGCCGGGAAACTTCTGAATGCCCTTCAAGACGT | + |
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Preference number: 6 (lower is better) Translates to: QSLSCLESGLGS*CRETSECPSRR Trigger: ACGTCTTGAAGGGCATTCAGAAGTTTCCCGGCATCAACTACCCAGTCCTGACTCCAAACATGAAAGGCTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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| CDS TCA 72 bp | TGTGCCACTTTGGAACTAGTTTTTCTGTTAAGGGCTTaGCAGATGAAGTCCCCAGCTTCTAGAAGTTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: CATLELVFLLRA*QMKSPASRSFW Trigger: CCAGAAACTTCTAGAAGCTGGGGACTTCATCTGTCAAGCCCTTAACAGAAAAACTAGTTCCAAAGTGGCACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030432.8 |
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