Pregenerated sensors for HMGB4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048686

Ensembl transcript IDs: ENSMUST00000053830.5

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GTGGTCCCGGGAGAAGAGCAGGAAGGAGGATGGGGGCTTCCGCGGTaGCTTTGGGTCCCTCTTTCTTCTCTTTCTTCTCTTGCCTATGTA	+
Preference number: 5 (lower is better) Translates to: VVPGEEQEGGWGLPR*LWVPLSSLSSLAYV Trigger: TACATAGGCAAGAGAAGAAAGAGAAGAAAGAGGGACCCAAAGGCACCGCGGAAGCCCCCATCCTCCTTCCTGCTCTTCTCCCGGGACCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053830.5
CDS CCA 90 bp	CCGGGAGAAGAGCAGGAAGGAGGATGGGGGCTTCCGCGGTGCCTTTaGGTCCCTCTTTCTTCTCTTTCTTCTCTTGCCTATGTAATTCAT	+
Preference number: 5 (lower is better) Translates to: PGEEQEGGWGLPRCL*VPLSSLSSLAYVIH Trigger: ATGAATTACATAGGCAAGAGAAGAAAGAGAAGAAAGAGGGACCCAAAGGCACCGCGGAAGCCCCCATCCTCCTTCCTGCTCTTCTCCCGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053830.5
CDS GCA 90 bp	GCTTCCGCGGTGCCTTTGGGTCCCTCTTTCTTCTCTTTCTTCTCTTaGCTATGTAATTCATCATTTCTTGCTGGTACCGGGCTTTATCGA	+
Preference number: 5 (lower is better) Translates to: ASAVPLGPSFFSFFS*LCNSSFLAGTGLYR Trigger: TCGATAAAGCCCGGTACCAGCAAGAAATGATGAATTACATAGGCAAGAGAAGAAAGAGAAGAAAGAGGGACCCAAAGGCACCGCGGAAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053830.5
CDS GCA 90 bp	CGGGCTTTATCGAGCTCTGCTAGGGCTTCATACTTTGCCTTTTCGTaGTTTGAGATGGATCTCCATTTTTCTGAACACTTTCTAGAGAAT	+
Preference number: 5 (lower is better) Translates to: RALSSSARASYFAFS*FEMDLHFSEHFLEN Trigger: ATTCTCTAGAAAGTGTTCAGAAAAATGGAGATCCATCTCAAAGCACGAAAAGGCAAAGTATGAAGCCCTAGCAGAGCTCGATAAAGCCCG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053830.5
CDS CAA 90 bp	CCCAGCAGCCTTGGCCACCTGCACCACGGTCCAGTCGGGGTTCTCTaGCTTCAGCATAGCATAGTGGTCCCGGGAGAAGAGCAGGAAGGA	+
Preference number: 6 (lower is better) Translates to: PSSLGHLHHGPVGVL*LQHSIVVPGEEQEG Trigger: TCCTTCCTGCTCTTCTCCCGGGACCACTATGCTATGCTGAAGCAAGAGAACCCCGACTGGACCGTGGTGCAGGTGGCCAAGGCTGCTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053830.5
CDS CAA 72 bp	CTTGGCCACCTGCACCACGGTCCAGTCGGGGTTCTCTaGCTTCAGCATAGCATAGTGGTCCCGGGAGAAGAG	+
Preference number: 6 (lower is better) Translates to: LGHLHHGPVGVL*LQHSIVVPGEE Trigger: CTCTTCTCCCGGGACCACTATGCTATGCTGAAGCAAGAGAACCCCGACTGGACCGTGGTGCAGGTGGCCAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053830.5
CDS CAA 72 bp	AGAGCAGGAAGGAGGATGGGGGCTTCCGCGGTGCCTTaGGGTCCCTCTTTCTTCTCTTTCTTCTCTTGCCTA	+
Preference number: 6 (lower is better) Translates to: RAGRRMGASAVP*GPSFFSFFSCL Trigger: TAGGCAAGAGAAGAAAGAGAAGAAAGAGGGACCCAAAGGCACCGCGGAAGCCCCCATCCTCCTTCCTGCTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053830.5
CDS CAA 90 bp	CCCGGGAGAAGAGCAGGAAGGAGGATGGGGGCTTCCGCGGTGCCTTaGGGTCCCTCTTTCTTCTCTTTCTTCTCTTGCCTATGTAATTCA	+
Preference number: 6 (lower is better) Translates to: PGRRAGRRMGASAVP*GPSFFSFFSCLCNS Trigger: TGAATTACATAGGCAAGAGAAGAAAGAGAAGAAAGAGGGACCCAAAGGCACCGCGGAAGCCCCCATCCTCCTTCCTGCTCTTCTCCCGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053830.5
CDS GCA 72 bp	TTGGTTGCGGTAGGCCTCCTGTTCCTCGAAATACTTTaGCCGCATAAGTGCAGCCTTCTGTTCATAGGGCTT	+
Preference number: 6 (lower is better) Translates to: LVAVGLLFLEIL*PHKCSLLFIGL Trigger: AAGCCCTATGAACAGAAGGCTGCACTTATGCGGGCAAAGTATTTCGAGGAACAGGAGGCCTACCGCAACCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053830.5
CDS CAA 90 bp	CTTGCTGGTACCGGGCTTTATCGAGCTCTGCTAGGGCTTCATACTTaGCCTTTTCGTGCTTTGAGATGGATCTCCATTTTTCTGAACACT	+
Preference number: 6 (lower is better) Translates to: LAGTGLYRALLGLHT*PFRALRWISIFLNT Trigger: AGTGTTCAGAAAAATGGAGATCCATCTCAAAGCACGAAAAGGCAAAGTATGAAGCCCTAGCAGAGCTCGATAAAGCCCGGTACCAGCAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053830.5
CDS CAA 72 bp	ACCGGGCTTTATCGAGCTCTGCTAGGGCTTCATACTTaGCCTTTTCGTGCTTTGAGATGGATCTCCATTTTT	+
Preference number: 6 (lower is better) Translates to: TGLYRALLGLHT*PFRALRWISIF Trigger: AAAAATGGAGATCCATCTCAAAGCACGAAAAGGCAAAGTATGAAGCCCTAGCAGAGCTCGATAAAGCCCGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053830.5
CDS GCA 72 bp	TCGAGCTCTGCTAGGGCTTCATACTTTGCCTTTTCGTaGTTTGAGATGGATCTCCATTTTTCTGAACACTTT	+
Preference number: 6 (lower is better) Translates to: SSSARASYFAFS*FEMDLHFSEHF Trigger: AAAGTGTTCAGAAAAATGGAGATCCATCTCAAAGCACGAAAAGGCAAAGTATGAAGCCCTAGCAGAGCTCGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053830.5
CDS CAA 72 bp	AGAGAATTCTTTAAAGCCAAGGTAGGTATTTGGCTGTaGCTCCTTGAATTTGTTTCTGAAATTCAGCATAAA	+
Preference number: 6 (lower is better) Translates to: REFFKAKVGIWL*LLEFVSEIQHK Trigger: TTTATGCTGAATTTCAGAAACAAATTCAAGGAGCAACAGCCAAATACCTACCTTGGCTTTAAAGAATTCTCT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053830.5

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