Pregenerated sensors for HMGB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066551Ensembl transcript IDs: ENSMUST00000085546.13, ENSMUST00000139443.8
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GTTCATGAATGGAGGGAGCATTTGGTCAAAGCATTTTGGAAGCTGGTTCCCTCCGTTACCCTACCACAATaGCAGGGCATGTGGACAAAA | + |
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Preference number: 2 (lower is better) Translates to: VHEWREHLVKAFWKLVPSVTLPQ*QGMWTK Trigger: TTTTGTCCACATGCCCTGCCATTGTGGTAGGGTAAC...GGAGGGAACCAGCTTCCAAAATGCTTTGACCAAATGCTCCCTCCATTCATGAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| 3UTR-3UTR TCA 90 bp | AGCCAGTCACTTGTTCTTAAGTTGGTAATCGAGACCATTACGGCCTGCGGAGGTTTCTTCAACTATGGATaGAAATGTTACCCTACCACA | + |
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Preference number: 2 (lower is better) Translates to: SQSLVLKLVIETITACGGFFNYG*KCYPTT Trigger: TGTGGTAGGGTAACATTTTCATCCATAGTTGAAGAA...ACCTCCGCAGGCCGTAATGGTCTCGATTACCAACTTAAGAACAAGTGACTGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| 3UTR-3UTR CCA 90 bp | ACTATCTCACTGGCCCCAGCATCAAGGGTTGTTAATGGGAAAGAGCCTTTCAGTGAGATTCTTCAACTATaGATGAAAATGTTACCCTAC | + |
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Preference number: 2 (lower is better) Translates to: TISLAPASRVVNGKEPFSEILQL*MKMLPY Trigger: GTAGGGTAACATTTTCATCCATAGTTGAAGAATCTC...ACTGAAAGGCTCTTTCCCATTAACAACCCTTGATGCTGGGGCCAGTGAGATAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| 3UTR GCA 72 bp | TTGGTCAAAGCATTTTGGAAGCTGGTTCCCTCCTTTTaGCATCGGTTGTCAGGGTTGGCAGCCAACTGCCTT | + |
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Preference number: 3 (lower is better) Translates to: LVKAFWKLVPSF*HRLSGLAANCL Trigger: AAGGCAGTTGGCTGCCAACCCTGACAACCGATGGCAAAAGGAGGGAACCAGCTTCCAAAATGCTTTGACCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| 3UTR CCA 72 bp | AATGGAGGGAGCATTTGGTCAAAGCATTTTGGAAGCTaGTTCCCTCCTTTTGCCATCGGTTGTCAGGGTTGG | + |
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Preference number: 3 (lower is better) Translates to: NGGSIWSKHFGS*FPPFAIGCQGW Trigger: CCAACCCTGACAACCGATGGCAAAAGGAGGGAACCAGCTTCCAAAATGCTTTGACCAAATGCTCCCTCCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| 3UTR-3UTR CAA 90 bp | GTTCATGAATGGAGGGAGCATTTGGTCAAAGCATTTTGGAAGCTGGTTCCCTCCCACGGTGTGACAGTATaGATCACTCCTTGCTTTGCC | + |
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Preference number: 3 (lower is better) Translates to: VHEWREHLVKAFWKLVPSHGVTV*ITPCFA Trigger: GGCAAAGCAAGGAGTGATCAATACTGTCACACCGTG...GGAGGGAACCAGCTTCCAAAATGCTTTGACCAAATGCTCCCTCCATTCATGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| 3UTR-3UTR CAA 90 bp | GTGTTCATGAATGGAGGGAGCATTTGGTCAAAGCATTTTGGAAGCTGGTTCCCTCCCCAGCATCAAGGGTaGTTAATGGGAAAGAGCCTT | + |
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Preference number: 3 (lower is better) Translates to: VFMNGGSIWSKHFGSWFPPQHQG*LMGKSL Trigger: AAGGCTCTTTCCCATTAACAACCCTTGATGCTGGGG...AGGGAACCAGCTTCCAAAATGCTTTGACCAAATGCTCCCTCCATTCATGAACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| 3UTR-3UTR CAA 90 bp | GTGTTCATGAATGGAGGGAGCATTTGGTCAAAGCATTTTGGAAGCTGGTTCCCTGGACAGACGTTCAGATaGCTTGATCCTAATAGTCCC | + |
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Preference number: 3 (lower is better) Translates to: VFMNGGSIWSKHFGSWFPGQTFR*LDPNSP Trigger: GGGACTATTAGGATCAAGCAATCTGAACGTCTGTCC...AGGGAACCAGCTTCCAAAATGCTTTGACCAAATGCTCCCTCCATTCATGAACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| 3UTR CCA 72 bp | GTTCATGAATGGAGGGAGCATTTGGTCAAAGCATTTTaGAAGCTGGTTCCCTCCTTTTGCCATCGGTTGTCA | + |
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Preference number: 3 (lower is better) Translates to: VHEWREHLVKAF*KLVPSFCHRLS Trigger: TGACAACCGATGGCAAAAGGAGGGAACCAGCTTCCAAAATGCTTTGACCAAATGCTCCCTCCATTCATGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| 3UTR-3UTR CAA 90 bp | AGCCAGTCACTTGTTCTTAAGTTGGTAATCGAGACCATTACGGCCTGCGGAGGTGCAAAGTTTATCCTCTaGTATCTGATTCATAAAGGG | + |
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Preference number: 3 (lower is better) Translates to: SQSLVLKLVIETITACGGAKFIL*YLIHKG Trigger: CCCTTTATGAATCAGATACAAGAGGATAAACTTTGC...ACCTCCGCAGGCCGTAATGGTCTCGATTACCAACTTAAGAACAAGTGACTGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| 3UTR CCA 72 bp | TCTTCAACTATGGATGAAAATGTTACCCTACCACAATaGCAGGGCATGTGGACAAAAGCTCTCTTCCAGCTA | + |
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Preference number: 3 (lower is better) Translates to: SSTMDENVTLPQ*QGMWTKALFQL Trigger: TAGCTGGAAGAGAGCTTTTGTCCACATGCCCTGCCATTGTGGTAGGGTAACATTTTCATCCATAGTTGAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| 3UTR CAA 72 bp | TTTGGTCAAAGCATTTTGGAAGCTGGTTCCCTCCTTTaGCCATCGGTTGTCAGGGTTGGCAGCCAACTGCCT | + |
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Preference number: 4 (lower is better) Translates to: FGQSILEAGSLL*PSVVRVGSQLP Trigger: AGGCAGTTGGCTGCCAACCCTGACAACCGATGGCAAAAGGAGGGAACCAGCTTCCAAAATGCTTTGACCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| CDS-3UTR TCA 90 bp | CTATCTCACTGGCCCCAGCATCAAGGGTTGTTAATGGGAAAGAGCCTTTCAGTTGTGCATTGGGGTCCTTaGACTTCTTTTTGGTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: LSHWPQHQGLLMGKSLSVVHWGP*TSFWSP Trigger: GGGAGACCAAAAAGAAGTTCAAGGACCCCAATGCAC...AACTGAAAGGCTCTTTCCCATTAACAACCCTTGATGCTGGGGCCAGTGAGATAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| 3UTR CAA 72 bp | CAGTACAAGTTTCCAAGCCAGTCACTTGTTCTTAAGTaGGTAATCGAGACCATTACGGCCTGCGGAGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: QYKFPSQSLVLK*VIETITACGGP Trigger: AGGACCTCCGCAGGCCGTAATGGTCTCGATTACCAACTTAAGAACAAGTGACTGGCTTGGAAACTTGTACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| CDS-3UTR TCA 90 bp | AGCCAGTCACTTGTTCTTAAGTTGGTAATCGAGACCATTACGGCCTGCGGAGGTCTTCTTGGAGAACTCTaGGAAGTTGACAGAAGCATC | + |
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Preference number: 4 (lower is better) Translates to: SQSLVLKLVIETITACGGLLGEL*EVDRSI Trigger: GATGCTTCTGTCAACTTCTCAGAGTTCTCCAAGAAG...ACCTCCGCAGGCCGTAATGGTCTCGATTACCAACTTAAGAACAAGTGACTGGCT 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085546.13 |
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| CDS-3UTR TCA 90 bp | TTTGTAGTGTATGCACATAACCATTTAGAAACCATTCTCACCAAAAGTAGCTACGTGCATTGGGGTCCTTaGACTTCTTTTTGGTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: FVVYAHNHLETILTKSSYVHWGP*TSFWSP Trigger: GGGAGACCAAAAAGAAGTTCAAGGACCCCAATGCAC...GTAGCTACTTTTGGTGAGAATGGTTTCTAAATGGTTATGTGCATACACTACAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000139443.8 |
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| CDS-3UTR TCA 90 bp | AAACCATTCTCACCAAAAGTAGCTACAAATTTCCCCCAAATTTGGATACATACTCTTCTTGGAGAACTCTaGGAAGTTGACAGAAGCATC | + |
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Preference number: 4 (lower is better) Translates to: KPFSPKVATNFPQIWIHTLLGEL*EVDRSI Trigger: GATGCTTCTGTCAACTTCTCAGAGTTCTCCAAGAAG...AGTATGTATCCAAATTTGGGGGAAATTTGTAGCTACTTTTGGTGAGAATGGTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139443.8 |
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