Pregenerated sensors for HMGA1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078249

Ensembl transcript IDs: ENSMUST00000105046.4

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	AGCTCCTTAGTGCCCTGCGGGAGGAAGGAACAGCCTAGAGTGGACTaGGGGAGGCGTGTTGGTGCCCGTTTGCCTTTGGTGGAGGCGAGA	+
Preference number: 1 (lower is better) Translates to: SSLVPCGRKEQPRVD*GRRVGARLPLVEAR Trigger: TCTCGCCTCCACCAAAGGCAAACGGGCACCAACACGCCTCCCCCAGTCCACTCTAGGCTGTTCCTTCCTCCCGCAGGGCACTAAGGAGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105046.4
3UTR GCA 90 bp	CCCGGTGATACTTTGGTGGGGACATGCTGGGATCTAAGCATCCCCTaGCCTGACCACACTGCTGCTGCTAGGTCAGCCACTGGGCCTTGT	+
Preference number: 1 (lower is better) Translates to: PGDTLVGTCWDLSIP*PDHTAAARSATGPC Trigger: ACAAGGCCCAGTGGCTGACCTAGCAGCAGCAGTGTGGTCAGGGCAGGGGATGCTTAGATCCCAGCATGTCCCCACCAAAGTATCACCGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105046.4
3UTR-3UTR GCA 90 bp	GCACAGGGACTGAGCCGAATCCTGCTCCCTTGGGTGCTGCGGAGCAGAGCCTGCCCTGGTGCGGTAGTGTaGAGTGGGGGCGGGGAGGGG	+
Preference number: 2 (lower is better) Translates to: AQGLSRILLPWVLRSRACPGAVV*SGGGEG Trigger: CCCCTCCCCGCCCCCACTGCACACTACCGCACCAGG...GCAGGCTCTGCTCCGCAGCACCCAAGGGAGCAGGATTCGGCTCAGTCCCTGTGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105046.4
3UTR CAA 90 bp	TGTGTTCGGGAGGAGGGCACAGGGACTGAGCCGAATCCTGCTCCCTaGGGTGCTGCGGAGCAGAGCCTGCAGCTGGTGCCTGGTGCGGTA	+
Preference number: 2 (lower is better) Translates to: CVREEGTGTEPNPAP*GAAEQSLQLVPGAV Trigger: TACCGCACCAGGCACCAGCTGCAGGCTCTGCTCCGCAGCACCCAAGGGAGCAGGATTCGGCTCAGTCCCTGTGCCCTCCTCCCGAACACA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105046.4
3UTR-3UTR TCA 90 bp	ATCCCCTGCCCTGACCACACTGCTGCTGCTAGGTCAGCCACTGGGCCTTGTCAGAGAGAGCCACGGCTCTaGGGGAGGTGCGCAGCAGGC	+
Preference number: 2 (lower is better) Translates to: IPCPDHTAAARSATGPCQREPRL*GRCAAG Trigger: GCCTGCTGCGCACCTCCCTCAGAGCCGTGGCTCTCT...CTGACAAGGCCCAGTGGCTGACCTAGCAGCAGCAGTGTGGTCAGGGCAGGGGAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105046.4
3UTR-3UTR GCA 90 bp	GGGGAAGCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGCTGCGGAGCAGAGCCTaGAGCTGGTGCCTGGTGCGG	+
Preference number: 2 (lower is better) Translates to: GEARNSRAEGTRKTKRPELRSRA*SWCLVR Trigger: CCGCACCAGGCACCAGCTGCAGGCTCTGCTCCGCAG...CTCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGCTTCCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105046.4
3UTR CAA 90 bp	CCTGCGGGAGGAAGGAACAGCCTAGAGTGGACTGGGGGAGGCGTGTaGGTGCCCGTTTGCCTTTGGTGGAGGCGAGAACAGGCCCTTACT	+
Preference number: 2 (lower is better) Translates to: PAGGRNSLEWTGGGV*VPVCLWWRREQALT Trigger: AGTAAGGGCCTGTTCTCGCCTCCACCAAAGGCAAACGGGCACCAACACGCCTCCCCCAGTCCACTCTAGGCTGTTCCTTCCTCCCGCAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105046.4
3UTR-3UTR GCA 90 bp	ATCCCCTGCCCTGACCACACTGCTGCTGCTAGGTCAGCCACTGGGCCTTGTCAGCTTAAGGCCAGGGAATaGTCCCAGGACCCTCTACGG	+
Preference number: 2 (lower is better) Translates to: IPCPDHTAAARSATGPCQLKARE*SQDPLR Trigger: CCGTAGAGGGTCCTGGGAGCATTCCCTGGCCTTAAG...CTGACAAGGCCCAGTGGCTGACCTAGCAGCAGCAGTGTGGTCAGGGCAGGGGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105046.4
3UTR-3UTR GCA 90 bp	ATGGGCGGTAACCCCATCTGTCTAGTCTCAGGTGAGAACATTAAAGTGGGTGGATGCTCCCTTGGGTGCTaGGGAGCAGAGCCTGCAGCT	+
Preference number: 2 (lower is better) Translates to: MGGNPICLVSGENIKVGGCSLGC*GAEPAA Trigger: AGCTGCAGGCTCTGCTCCGCAGCACCCAAGGGAGCA...TCCACCCACTTTAATGTTCTCACCTGAGACTAGACAGATGGGGTTACCGCCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105046.4
3UTR-3UTR GCA 90 bp	GTGTGGGGGAGAGAATACAGGCAAATTCAGGAGGATGAACATCTGACGCTGGTAGATCTAAGCATCCCCTaGCCTGACCACACTGCTGCT	+
Preference number: 2 (lower is better) Translates to: VWGREYRQIQEDEHLTLVDLSIP*PDHTAA Trigger: AGCAGCAGTGTGGTCAGGGCAGGGGATGCTTAGATC...TACCAGCGTCAGATGTTCATCCTCCTGAATTTGCCTGTATTCTCTCCCCCACAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105046.4
3UTR-3UTR GCA 90 bp	ATGGGCGGTAACCCCATCTGTCTAGTCTCAGGTGAGAACATTAAAGTGGGTGGAGCTCAGCCAACCCAGTaGATGATCTCTGTAGGGTGG	+
Preference number: 2 (lower is better) Translates to: MGGNPICLVSGENIKVGGAQPTQ*MISVGW Trigger: CCACCCTACAGAGATCATGCACTGGGTTGGCTGAGC...TCCACCCACTTTAATGTTCTCACCTGAGACTAGACAGATGGGGTTACCGCCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105046.4
3UTR TCA 72 bp	GACCCGCAAAACAAAGCGCCCAGAGAGCCACGGCTCTaGGGGAGGTGCGCAGCAGGCCGGGCTGCGGCTAAA	+
Preference number: 3 (lower is better) Translates to: DPQNKAPREPRL*GRCAAGRAAAK Trigger: TTTAGCCGCAGCCCGGCCTGCTGCGCACCTCCCTCAGAGCCGTGGCTCTCTGGGCGCTTTGTTTTGCGGGTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105046.4
CDS-3UTR GCA 90 bp	GGAGGTGGCCCTACACCCTTTTCCCATCAAAGTGGGCCCCCATCCTCACTCTGCGCTGCTTGCGTGGCCTaGCCCGGCCTCGCTTCTCAG	+
Preference number: 4 (lower is better) Translates to: GGGPTPFSHQSGPPSSLCAACVA*PGLASQ Trigger: CTGAGAAGCGAGGCCGGGGCAGGCCACGCAAGCAGC...GCAGAGTGAGGATGGGGGCCCACTTTGATGGGAAAAGGGTGTAGGGCCACCTCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105046.4