Pregenerated sensors for HMGA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046711Ensembl transcript IDs: ENSMUST00000114888.11, ENSMUST00000117254.9, ENSMUST00000117600.9, ENSMUST00000118570.2, ENSMUST00000118599.9, ENSMUST00000119486.9, ENSMUST00000231358.2, ENSMUST00000231796.2, ENSMUST00000231825.2, ENSMUST00000231866.2, ENSMUST00000231874.2, ENSMUST00000232013.2, ENSMUST00000232253.2, ENSMUST00000232265.2, ENSMUST00000232552.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GAGCAGAGCCTGCAGCTGGTGCCTGGTGCGGTAGTGTGCAGTGGGGGCGGGGAGGCTCCTCAGTGGCTATaGAGCAGGCGGCACTGCGAG | + |
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Preference number: 2 (lower is better) Translates to: EQSLQLVPGAVVCSGGGEAPQWL*SRRHCE Trigger: CTCGCAGTGCCGCCTGCTCCATAGCCACTGAGGAGC...CTCCCCGCCCCCACTGCACACTACCGCACCAGGCACCAGCTGCAGGCTCTGCTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 14 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232253.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CCA 90 bp | CTACGGGGAAGCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCGCTCCTCAGTGGCTATaGAGCAGGCGGCACTGCGAG | + |
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Preference number: 2 (lower is better) Translates to: LRGSQEQQGRRDPQNKAPAPQWL*SRRHCE Trigger: CTCGCAGTGCCGCCTGCTCCATAGCCACTGAGGAGC...GGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGCTTCCCCGTAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CCA 90 bp | CGGGGAAGCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGCTCCTCAGTGGCTATaGAGCAGGCGGCACTGCGAG | + |
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Preference number: 2 (lower is better) Translates to: RGSQEQQGRRDPQNKAPRAPQWL*SRRHCE Trigger: CTCGCAGTGCCGCCTGCTCCATAGCCACTGAGGAGC...TCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGCTTCCCCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CCA 90 bp | GCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGAGCCACCGAATCCTGCTCCCTTaGGTGCTGCGGAGCAGAGCC | + |
|
Preference number: 2 (lower is better) Translates to: ARNSRAEGTRKTKRPESHRILLP*VLRSRA Trigger: GGCTCTGCTCCGCAGCACCCAAGGGAGCAGGATTCG...GTGGCTCTCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 13 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CCA 90 bp | AGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGAGCCACGGCCGAATCCTGCTCCCTTaGGTGCTGCGGAGCAGAGCC | + |
|
Preference number: 2 (lower is better) Translates to: RNSRAEGTRKTKRPESHGRILLP*VLRSRA Trigger: GGCTCTGCTCCGCAGCACCCAAGGGAGCAGGATTCG...GCCGTGGCTCTCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 13 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CCA 90 bp | GGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGAGCCACGGCTCGAATCCTGCTCCCTTaGGTGCTGCGGAGCAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: GTAGQKGPAKQSAQRATARILLP*VLRSRA Trigger: GGCTCTGCTCCGCAGCACCCAAGGGAGCAGGATTCG...AGCCGTGGCTCTCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 13 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CCA 90 bp | GACCACACTGCTGCTGCTAGGTCAGCCACTGGGCCTTGTCAGAGTGAGATGGGGGCTCCTCAGTGGCTATaGAGCAGGCGGCACTGCGAG | + |
|
Preference number: 2 (lower is better) Translates to: DHTAAARSATGPCQSEMGAPQWL*SRRHCE Trigger: CTCGCAGTGCCGCCTGCTCCATAGCCACTGAGGAGC...CCCCATCTCACTCTGACAAGGCCCAGTGGCTGACCTAGCAGCAGCAGTGTGGTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 10 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CCA 90 bp | CACACTGCTGCTGCTAGGTCAGCCACTGGGCCTTGTCAGAGTGAGATGGGGCTGCGAATCCTGCTCCCTTaGGTGCTGCGGAGCAGAGCC | + |
|
Preference number: 2 (lower is better) Translates to: HTAAARSATGPCQSEMGLRILLP*VLRSRA Trigger: GGCTCTGCTCCGCAGCACCCAAGGGAGCAGGATTCG...CAGCCCCATCTCACTCTGACAAGGCCCAGTGGCTGACCTAGCAGCAGCAGTGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 10 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CCA 90 bp | GACCCTCTACGGGGAAGCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCTCCTCAGTGGCTATaGAGCAGGCGGCACTGCGAG | + |
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Preference number: 2 (lower is better) Translates to: DPLRGSQEQQGRRDPQNKAPQWL*SRRHCE Trigger: CTCGCAGTGCCGCCTGCTCCATAGCCACTGAGGAGC...TTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGCTTCCCCGTAGAGGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CCA 90 bp | AGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGAGCCACGGCTTAGCCTTGTCAGGATaGGGCAGGTGTGTTCGGGAG | + |
|
Preference number: 2 (lower is better) Translates to: RNSRAEGTRKTKRPESHGLALSG*GRCVRE Trigger: CTCCCGAACACACCTGCCCCATCCTGACAAGGCTAA...GCCGTGGCTCTCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 13 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CCA 90 bp | GGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGAGCCACGGCTTTAGCCTTGTCAGGATaGGGCAGGTGTGTTCGGGAG | + |
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Preference number: 2 (lower is better) Translates to: GTAGQKGPAKQSAQRATALALSG*GRCVRE Trigger: CTCCCGAACACACCTGCCCCATCCTGACAAGGCTAA...AGCCGTGGCTCTCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 13 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CCA 90 bp | GCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGAGCCACTTAGCCTTGTCAGGATaGGGCAGGTGTGTTCGGGAG | + |
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Preference number: 2 (lower is better) Translates to: ARNSRAEGTRKTKRPESHLALSG*GRCVRE Trigger: CTCCCGAACACACCTGCCCCATCCTGACAAGGCTAA...GTGGCTCTCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 13 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CCA 90 bp | CGGGGAAGCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGATTAGCCTTGTCAGGATaGGGCAGGTGTGTTCGGGAG | + |
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Preference number: 2 (lower is better) Translates to: RGSQEQQGRRDPQNKAPRLALSG*GRCVRE Trigger: CTCCCGAACACACCTGCCCCATCCTGACAAGGCTAA...TCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGCTTCCCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CCA 90 bp | GACCACACTGCTGCTGCTAGGTCAGCCACTGGGCCTTGTCAGAGTGAGATGGGGTTAGCCTTGTCAGGATaGGGCAGGTGTGTTCGGGAG | + |
|
Preference number: 2 (lower is better) Translates to: DHTAAARSATGPCQSEMGLALSG*GRCVRE Trigger: CTCCCGAACACACCTGCCCCATCCTGACAAGGCTAA...CCCCATCTCACTCTGACAAGGCCCAGTGGCTGACCTAGCAGCAGCAGTGTGGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 10 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CCA 90 bp | CACACTGCTGCTGCTAGGTCAGCCACTGGGCCTTGTCAGAGTGAGATGGGGCTGTTAGCCTTGTCAGGATaGGGCAGGTGTGTTCGGGAG | + |
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Preference number: 2 (lower is better) Translates to: HTAAARSATGPCQSEMGLLALSG*GRCVRE Trigger: CTCCCGAACACACCTGCCCCATCCTGACAAGGCTAA...CAGCCCCATCTCACTCTGACAAGGCCCAGTGGCTGACCTAGCAGCAGCAGTGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 10 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CAA 90 bp | CGGGGAAGCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGACCGAATCCTGCTCCCTaGGGTGCTGCGGAGCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: RGSQEQQGRRDPQNKAPRPNPAP*GAAEQS Trigger: GCTCTGCTCCGCAGCACCCAAGGGAGCAGGATTCGG...TCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGCTTCCCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CAA 90 bp | GCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGAGCCACCCGAATCCTGCTCCCTaGGGTGCTGCGGAGCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: ARNSRAEGTRKTKRPESHPNPAP*GAAEQS Trigger: GCTCTGCTCCGCAGCACCCAAGGGAGCAGGATTCGG...GTGGCTCTCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 13 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CAA 90 bp | AGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGAGCCACGGCCCGAATCCTGCTCCCTaGGGTGCTGCGGAGCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: RNSRAEGTRKTKRPESHGPNPAP*GAAEQS Trigger: GCTCTGCTCCGCAGCACCCAAGGGAGCAGGATTCGG...GCCGTGGCTCTCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 13 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR GCA 72 bp | AAAGGAGGGGGCGGCAAGGCTAGCTCCTTAGTGCCCTaGGGGAGGAAGGAACAGCCTAGAGTGGACTGGGGG | + |
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Preference number: 3 (lower is better) Translates to: KGGGGKASSLVP*GRKEQPRVDWG Trigger: CCCCCAGTCCACTCTAGGCTGTTCCTTCCTCCCGCAGGGCACTAAGGAGCTAGCCTTGCCGCCCCCTCCTTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000114888.11 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 |
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| 3UTR CCA 72 bp | GTGCCCTGCGGGAGGAAGGAACAGCCTAGAGTGGACTaGGGGAGGCGTGTTGGTGCCCGTTTGCCTTTGGTG | + |
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Preference number: 3 (lower is better) Translates to: VPCGRKEQPRVD*GRRVGARLPLV Trigger: CACCAAAGGCAAACGGGCACCAACACGCCTCCCCCAGTCCACTCTAGGCTGTTCCTTCCTCCCGCAGGGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000114888.11 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 |
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| 3UTR-3UTR CAA 90 bp | CACACTGCTGCTGCTAGGTCAGCCACTGGGCCTTGTCAGAGTGAGATGGGGCTGCCGAATCCTGCTCCCTaGGGTGCTGCGGAGCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: HTAAARSATGPCQSEMGLPNPAP*GAAEQS Trigger: GCTCTGCTCCGCAGCACCCAAGGGAGCAGGATTCGG...CAGCCCCATCTCACTCTGACAAGGCCCAGTGGCTGACCTAGCAGCAGCAGTGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 10 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CAA 90 bp | GACCCTCTACGGGGAAGCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAACCGAATCCTGCTCCCTaGGGTGCTGCGGAGCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: DPLRGSQEQQGRRDPQNKPNPAP*GAAEQS Trigger: GCTCTGCTCCGCAGCACCCAAGGGAGCAGGATTCGG...TTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGCTTCCCCGTAGAGGGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR GCA 72 bp | CTAGAGTGGACTGGGGGAGGCGTGTTGGTGCCCGTTTaGCTTTGGTGGAGGCGAGAACAGGCCCTTACTCTG | + |
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Preference number: 3 (lower is better) Translates to: LEWTGGGVLVPV*LWWRREQALTL Trigger: CAGAGTAAGGGCCTGTTCTCGCCTCCACCAAAGGCAAACGGGCACCAACACGCCTCCCCCAGTCCACTCTAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000114888.11 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 |
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| 3UTR-3UTR CAA 90 bp | AGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGAGCCACGGCAATGGGAAGTTAGCCTaGTCAGGATGGGGCAGGTGT | + |
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Preference number: 3 (lower is better) Translates to: RNSRAEGTRKTKRPESHGNGKLA*SGWGRC Trigger: ACACCTGCCCCATCCTGACAAGGCTAACTTCCCATT...GCCGTGGCTCTCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 13 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CAA 90 bp | GACCACACTGCTGCTGCTAGGTCAGCCACTGGGCCTTGTCAGAGTGAGATGGGGAATGGGAAGTTAGCCTaGTCAGGATGGGGCAGGTGT | + |
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Preference number: 3 (lower is better) Translates to: DHTAAARSATGPCQSEMGNGKLA*SGWGRC Trigger: ACACCTGCCCCATCCTGACAAGGCTAACTTCCCATT...CCCCATCTCACTCTGACAAGGCCCAGTGGCTGACCTAGCAGCAGCAGTGTGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 10 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CAA 90 bp | CACACTGCTGCTGCTAGGTCAGCCACTGGGCCTTGTCAGAGTGAGATGGGGCTGAATGGGAAGTTAGCCTaGTCAGGATGGGGCAGGTGT | + |
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Preference number: 3 (lower is better) Translates to: HTAAARSATGPCQSEMGLNGKLA*SGWGRC Trigger: ACACCTGCCCCATCCTGACAAGGCTAACTTCCCATT...CAGCCCCATCTCACTCTGACAAGGCCCAGTGGCTGACCTAGCAGCAGCAGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 10 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR GCA 72 bp | ACTTTGGTGGGGACATGCTGGGATCTAAGCATCCCCTaGCCTGACCACACTGCTGCTGCTAGGTCAGCCACT | + |
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Preference number: 3 (lower is better) Translates to: TLVGTCWDLSIP*PDHTAAARSAT Trigger: AGTGGCTGACCTAGCAGCAGCAGTGTGGTCAGGGCAGGGGATGCTTAGATCCCAGCATGTCCCCACCAAAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 9 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000119486.9 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| 3UTR-3UTR CAA 90 bp | GACCCTCTACGGGGAAGCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAAATGGGAAGTTAGCCTaGTCAGGATGGGGCAGGTGT | + |
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Preference number: 3 (lower is better) Translates to: DPLRGSQEQQGRRDPQNKNGKLA*SGWGRC Trigger: ACACCTGCCCCATCCTGACAAGGCTAACTTCCCATT...TTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGCTTCCCCGTAGAGGGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 11 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| CDS-3UTR CCA 90 bp | GCAGAGCCTGCAGCTGGTGCCTGGTGCGGTAGTGTGCAGTGGGGGCGGGGAGGGTTGGAGGCCAGGGGCTaGCTGGACTTTGAGCCCGAC | + |
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Preference number: 4 (lower is better) Translates to: AEPAAGAWCGSVQWGRGGLEARG*LDFEPD Trigger: GTCGGGCTCAAAGTCCAGCCAGCCCCTGGCCTCCAA...CCCTCCCCGCCCCCACTGCACACTACCGCACCAGGCACCAGCTGCAGGCTCTGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 15 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231866.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232253.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| CDS-3UTR TCA 90 bp | GCAGAGCCTGCAGCTGGTGCCTGGTGCGGTAGTGTGCAGTGGGGGCGGGGAGGGCGGCACTGCGAGTGGTaGTCACTGCTCCTCCTCAGA | + |
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Preference number: 4 (lower is better) Translates to: AEPAAGAWCGSVQWGRGGRHCEW*SLLLLR Trigger: TCTGAGGAGGAGCAGTGATCACCACTCGCAGTGCCG...CCCTCCCCGCCCCCACTGCACACTACCGCACCAGGCACCAGCTGCAGGCTCTGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231866.2 |
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| CDS-3UTR CCA 90 bp | TCCCAGGGGACAGCTGCTCCTCAGTGGCTATGGAGCAGGCGGCACTGCGAGTGGTTGGAGGCCAGGGGCTaGCTGGACTTTGAGCCCGAC | + |
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Preference number: 4 (lower is better) Translates to: SQGTAAPQWLWSRRHCEWLEARG*LDFEPD Trigger: GTCGGGCTCAAAGTCCAGCCAGCCCCTGGCCTCCAA...CCACTCGCAGTGCCGCCTGCTCCATAGCCACTGAGGAGCAGCTGTCCCCTGGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 14 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232253.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| CDS-3UTR CCA 90 bp | GTCCCAGGGGACAGCTGCTCCTCAGTGGCTATGGAGCAGGCGGCACTGCGAGTGTTGGAGGCCAGGGGCTaGCTGGACTTTGAGCCCGAC | + |
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Preference number: 4 (lower is better) Translates to: VPGDSCSSVAMEQAALRVLEARG*LDFEPD Trigger: GTCGGGCTCAAAGTCCAGCCAGCCCCTGGCCTCCAA...CACTCGCAGTGCCGCCTGCTCCATAGCCACTGAGGAGCAGCTGTCCCCTGGGAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 14 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232253.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| CDS-3UTR CCA 90 bp | GGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGAGCCACGGCTTTGGAGGCCAGGGGCTaGCTGGACTTTGAGCCCGAC | + |
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Preference number: 4 (lower is better) Translates to: GTAGQKGPAKQSAQRATALEARG*LDFEPD Trigger: GTCGGGCTCAAAGTCCAGCCAGCCCCTGGCCTCCAA...AGCCGTGGCTCTCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 13 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| CDS-3UTR CCA 90 bp | CTACGGGGAAGCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCTTGGAGGCCAGGGGCTaGCTGGACTTTGAGCCCGAC | + |
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Preference number: 4 (lower is better) Translates to: LRGSQEQQGRRDPQNKAPLEARG*LDFEPD Trigger: GTCGGGCTCAAAGTCCAGCCAGCCCCTGGCCTCCAA...GGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGCTTCCCCGTAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 11 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| CDS-3UTR TCA 90 bp | GCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGAGCCACTTCTGCAAAGATGTCTaGCTCCCGACCAGCGCCGTC | + |
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Preference number: 4 (lower is better) Translates to: ARNSRAEGTRKTKRPESHFCKDV*LPTSAV Trigger: GACGGCGCTGGTCGGGAGTCAGACATCTTTGCAGAA...GTGGCTCTCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231796.2 |
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| 3UTR CAA 72 bp | GTGGACTGGGGGAGGCGTGTTGGTGCCCGTTTGCCTTaGGTGGAGGCGAGAACAGGCCCTTACTCTGGAGAT | + |
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Preference number: 4 (lower is better) Translates to: VDWGRRVGARLP*VEARTGPYSGD Trigger: ATCTCCAGAGTAAGGGCCTGTTCTCGCCTCCACCAAAGGCAAACGGGCACCAACACGCCTCCCCCAGTCCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000114888.11 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 |
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| 3UTR CAA 72 bp | CCTAGAGTGGACTGGGGGAGGCGTGTTGGTGCCCGTTaGCCTTTGGTGGAGGCGAGAACAGGCCCTTACTCT | + |
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Preference number: 4 (lower is better) Translates to: PRVDWGRRVGAR*PLVEARTGPYS Trigger: AGAGTAAGGGCCTGTTCTCGCCTCCACCAAAGGCAAACGGGCACCAACACGCCTCCCCCAGTCCACTCTAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000114888.11 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 |
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| CDS-3UTR CAA 90 bp | GCAGAGCCTGCAGCTGGTGCCTGGTGCGGTAGTGTGCAGTGGGGGCGGGGAGGGGTGACTTTCCGGGTCTaGGCGGCGCCCTTATTCTTG | + |
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Preference number: 5 (lower is better) Translates to: AEPAAGAWCGSVQWGRGGVTFRV*AAPLFL Trigger: CAAGAATAAGGGCGCCGCCAAGACCCGGAAAGTCAC...CCCTCCCCGCCCCCACTGCACACTACCGCACCAGGCACCAGCTGCAGGCTCTGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 14 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232253.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| CDS-3UTR CAA 90 bp | GCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGAGCCACGTGACTTTCCGGGTCTaGGCGGCGCCCTTATTCTTG | + |
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Preference number: 5 (lower is better) Translates to: ARNSRAEGTRKTKRPESHVTFRV*AAPLFL Trigger: CAAGAATAAGGGCGCCGCCAAGACCCGGAAAGTCAC...GTGGCTCTCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 13 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| CDS-3UTR CAA 90 bp | AGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGAGCCACGGCGTGACTTTCCGGGTCTaGGCGGCGCCCTTATTCTTG | + |
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Preference number: 5 (lower is better) Translates to: RNSRAEGTRKTKRPESHGVTFRV*AAPLFL Trigger: CAAGAATAAGGGCGCCGCCAAGACCCGGAAAGTCAC...GCCGTGGCTCTCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 13 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231796.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232013.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| CDS-3UTR CAA 90 bp | CTACGGGGAAGCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCGTGACTTTCCGGGTCTaGGCGGCGCCCTTATTCTTG | + |
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Preference number: 5 (lower is better) Translates to: LRGSQEQQGRRDPQNKAPVTFRV*AAPLFL Trigger: CAAGAATAAGGGCGCCGCCAAGACCCGGAAAGTCAC...GGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGCTTCCCCGTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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| CDS-3UTR CAA 90 bp | CGGGGAAGCCAGGAACAGCAGGGCAGAAGGGACCCGCAAAACAAAGCGCCCAGAGTGACTTTCCGGGTCTaGGCGGCGCCCTTATTCTTG | + |
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Preference number: 5 (lower is better) Translates to: RGSQEQQGRRDPQNKAPRVTFRV*AAPLFL Trigger: CAAGAATAAGGGCGCCGCCAAGACCCGGAAAGTCAC...TCTGGGCGCTTTGTTTTGCGGGTCCCTTCTGCCCTGCTGTTCCTGGCTTCCCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 11 transcripts: ENSMUST00000114888.11 ENSMUST00000117254.9 ENSMUST00000117600.9 ENSMUST00000118570.2 ENSMUST00000118599.9 ENSMUST00000119486.9 ENSMUST00000231358.2 ENSMUST00000231825.2 ENSMUST00000231874.2 ENSMUST00000232265.2 ENSMUST00000232552.2 |
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