Pregenerated sensors for HLX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039377Ensembl transcript IDs: ENSMUST00000048572.7, ENSMUST00000174257.3
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CAAGTTAAAGGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGTGTAGAGGAAGCTaGACGCTATGCCCTCGGTCC | + |
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Preference number: 2 (lower is better) Translates to: QVKGLLSAASPYAKTPGAQCRGS*TLCPRS Trigger: GGACCGAGGGCATAGCGTGCAGCTTCCTCTACACTG...AGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACTTAGGAGGCCTTTAACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| 3UTR GCA 72 bp | CCTAAGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTaGTCAGAGGAACAGTTCCACCGAACATTTCACAGT | + |
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Preference number: 3 (lower is better) Translates to: PKCSKSLCQDPW*SEEQFHRTFHS Trigger: ACTGTGAAATGTTCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACTTAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS-3UTR TCA 90 bp | CTGGTGCTCAGAGGAACAGTTCCACCGAACATTTCACAGTGTGAGCTGCTTAGGGCCAGCCGGGACTTCTaGGGGCGCCACCACCGGGGT | + |
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Preference number: 4 (lower is better) Translates to: LVLRGTVPPNISQCELLRASRDF*GRHHRG Trigger: ACCCCGGTGGTGGCGCCCTCAGAAGTCCCGGCTGGC...CCTAAGCAGCTCACACTGTGAAATGTTCGGTGGAACTGTTCCTCTGAGCACCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CCA 90 bp | CAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGAACATTGCGCCACCACCGGGGTaGGACGGAGCGGGGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: QVLMPRPLVLRGTVPPNIAPPPG*DGAGIW Trigger: CCAGATCCCCGCTCCGTCCCACCCCGGTGGTGGCGC...AATGTTCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR GCA 90 bp | GTTAAAGGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGCACGGAGCCCAAGTGTaGGGTGAGGGCTGCCGAGGC | + |
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Preference number: 4 (lower is better) Translates to: VKGLLSAASPYAKTPGAQHGAQV*GEGCRG Trigger: GCCTCGGCAGCCCTCACCGCACACTTGGGCTCCGTG...CTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACTTAGGAGGCCTTTAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR GCA 90 bp | AGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCAAGGAGGCGTGCGGGTaGACGGAGCCCAAGTGTGCG | + |
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Preference number: 4 (lower is better) Translates to: SAASPYAKTPGAQRNSSTKEACG*TEPKCA Trigger: CGCACACTTGGGCTCCGTGCACCCGCACGCCTCCTT...GGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR GCA 90 bp | TGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGAGGCGGGGGCTGCTGCTaGGGTTGCTGTTGCTGCGTT | + |
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Preference number: 4 (lower is better) Translates to: CSKSLCQDPWCSEEQFHRGGGCC*GCCCCV Trigger: AACGCAGCAACAGCAACCGCAGCAGCAGCCCCCGCC...TCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CCA 90 bp | AAAGGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGGATCTGGCGGCAGCTTaGAAGGAGGCGTGCGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: KGLLSAASPYAKTPGAQRDLAAA*KEACGC Trigger: GCACCCGCACGCCTCCTTCCAAGCTGCCGCCAGATC...CCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACTTAGGAGGCCTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CCA 90 bp | GCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGAAGACGGAGCGGGGATCTaGCGGCAGCTTGGAAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: AASPYAKTPGAQRNSSTEDGAGI*RQLGRR Trigger: CCTCCTTCCAAGCTGCCGCCAGATCCCCGCTCCGTC...TTCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CCA 90 bp | TGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGACGCCCTCAGAACGGCTaGGGCTCCTCTCCTCCCGTT | + |
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Preference number: 4 (lower is better) Translates to: CSKSLCQDPWCSEEQFHRRPQNG*GSSPPV Trigger: AACGGGAGGAGAGGAGCCCCAGCCGTTCTGAGGGCG...TCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR TCA 90 bp | GTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGTTTGAGGACTGCTGGTaGCTGAGGGCTGGTGAGCCG | + |
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Preference number: 4 (lower is better) Translates to: VQQVLMPRPLVLRGTVPPFEDCW*LRAGEP Trigger: CGGCTCACCAGCCCTCAGTCACCAGCAGTCCTCAAA...CGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS-3UTR CCA 90 bp | GCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGAATGCTGCGGGAGATGCTaGTGGAAGGCGGCAGAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: AASPYAKTPGAQRNSSTECCGRC*WKAAES Trigger: GCTCTCTGCCGCCTTCCACCAGCATCTCCCGCAGCA...TTCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CCA 90 bp | AGGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAATCCGTTCCGTGTCGCTaGGGGCCATGTCCAGGGACT | + |
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Preference number: 4 (lower is better) Translates to: RPPKCSKSLCQDPWCSEESVPCR*GPCPGT Trigger: AGTCCCTGGACATGGCCCCCAGCGACACGGAACGGA...TTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACTTAGGAGGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS-3UTR TCA 90 bp | TGGTGCTCAGAGGAACAGTTCCACCGAACATTTCACAGTGTGAGCTGCTTAGGTAGCGGAGACAGCCGCTaGGGGAAGCCAGCCGGGACT | + |
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Preference number: 4 (lower is better) Translates to: WCSEEQFHRTFHSVSCLGSGDSR*GKPAGT Trigger: AGTCCCGGCTGGCTTCCCTCAGCGGCTGTCTCCGCT...ACCTAAGCAGCTCACACTGTGAAATGTTCGGTGGAACTGTTCCTCTGAGCACCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR TCA 90 bp | AGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGAACAAGGACTGCTGGTGACTaGGGGCTGGTGAGCCGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: SKSLCQDPWCSEEQFHRTRTAGD*GLVSRR Trigger: CCTTCGGCTCACCAGCCCTCAGTCACCAGCAGTCCT...TGTTCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS-3UTR TCA 90 bp | TGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGATTTGAGGACTGCTGGTaGCTGAGGGCTGGTGAGCCG | + |
|
Preference number: 4 (lower is better) Translates to: CSKSLCQDPWCSEEQFHRFEDCW*LRAGEP Trigger: CGGCTCACCAGCCCTCAGTCACCAGCAGTCCTCAAA...TCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS-3UTR TCA 90 bp | AAAGGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGGCGATCTCCGGGCTTTaGGGACTGCTGGTGACTGAG | + |
|
Preference number: 4 (lower is better) Translates to: KGLLSAASPYAKTPGAQRAISGL*GLLVTE Trigger: CTCAGTCACCAGCAGTCCTCAAAGCCCGGAGATCGC...CCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACTTAGGAGGCCTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS-3UTR CCA 90 bp | GCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGAACATTCCGTTCCGTGTCGCTaGGGGCCATGTCCAGGGACT | + |
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Preference number: 4 (lower is better) Translates to: ASPYAKTPGAQRNSSTEHSVPCR*GPCPGT Trigger: AGTCCCTGGACATGGCCCCCAGCGACACGGAACGGA...ATGTTCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS-3UTR TCA 90 bp | GTTAAAGGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGGCGATCTCCGGGCTTTaGGGACTGCTGGTGACTGAG | + |
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Preference number: 4 (lower is better) Translates to: VKGLLSAASPYAKTPGAQAISGL*GLLVTE Trigger: CTCAGTCACCAGCAGTCCTCAAAGCCCGGAGATCGC...CTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACTTAGGAGGCCTTTAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS-3UTR GCA 90 bp | GTTAAAGGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGCATGGCCGCCAGCTaGTTTCGGTCTGGCTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: VKGLLSAASPYAKTPGAQSMAAS*FRSGLV Trigger: GACCAAGCCAGACCGAAAGCAGCTGGCGGCCATGCT...CTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACTTAGGAGGCCTTTAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR GCA 90 bp | AGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCCAGTGTAGAGGAAGCTaGACGCTATGCCCTCGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: SAASPYAKTPGAQRNSSTQCRGS*TLCPRS Trigger: GGACCGAGGGCATAGCGTGCAGCTTCCTCTACACTG...GGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174257.3 |
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| CDS-3UTR CCA 90 bp | CTGGTGCTCAGAGGAACAGTTCCACCGAACATTTCACAGTGTGAGCTGCTTAGGTGCGGGAGATGCTGGTaGAAGGCGGCAGAGAGCGGA | + |
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Preference number: 4 (lower is better) Translates to: LVLRGTVPPNISQCELLRCGRCW*KAAESG Trigger: TCCGCTCTCTGCCGCCTTCCACCAGCATCTCCCGCA...CCTAAGCAGCTCACACTGTGAAATGTTCGGTGGAACTGTTCCTCTGAGCACCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR TCA 90 bp | TGGTGCTCAGAGGAACAGTTCCACCGAACATTTCACAGTGTGAGCTGCTTAGGTAGGACTGCTGGTGACTaGGGGCTGGTGAGCCGAAGG | + |
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Preference number: 4 (lower is better) Translates to: WCSEEQFHRTFHSVSCLGRTAGD*GLVSRR Trigger: CCTTCGGCTCACCAGCCCTCAGTCACCAGCAGTCCT...ACCTAAGCAGCTCACACTGTGAAATGTTCGGTGGAACTGTTCCTCTGAGCACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR GCA 90 bp | GCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGAATTGTCCTTGTCCTTCTaGGCCTGCGCCTCCTTAGAG | + |
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Preference number: 4 (lower is better) Translates to: AASPYAKTPGAQRNSSTELSLSF*ACASLE Trigger: CTCTAAGGAGGCGCAGGCGCAGAAGGACAAGGACAA...TTCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR TCA 90 bp | CAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGAACATTAGAAAGAGGGTTTCTTaGCAGCGGCTGGGTCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: QVLMPRPLVLRGTVPPNIRKRVS*QRLGPG Trigger: CCCTGGACCCAGCCGCTGTCAAGAAACCCTCTTTCT...AATGTTCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR GCA 90 bp | CAAGTTAAAGGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCCACACCTTCACCTGTaGATCCGTGAGGCCCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: QVKGLLSAASPYAKTPGAPHLHL*IREAQH Trigger: ATGCTGGGCCTCACGGATGCACAGGTGAAGGTGTGG...AGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACTTAGGAGGCCTTTAACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR TCA 90 bp | AGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGATCGATACCAAATTTaGGGTCTTTGCTGGAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: SAASPYAKTPGAQRNSSTDRYQI*GLCWRG Trigger: CCCCCTCCAGCAAAGACCTCAAATTTGGTATCGATC...GGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CCA 90 bp | CAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGAACATTCAGCTGCTTTCGGTCTaGCTTGGTCACGTACTTCTG | + |
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Preference number: 4 (lower is better) Translates to: QVLMPRPLVLRGTVPPNIQLLSV*LGHVLL Trigger: CAGAAGTACGTGACCAAGCCAGACCGAAAGCAGCTG...AATGTTCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR TCA 90 bp | TTTTATTTACAAGTTAAAGGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGACCTCACCTGTGCATCCGTaGGGCCCAGCATGGCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: FYLQVKGLLSAASPYAKTSPVHP*GPAWPP Trigger: TGGCGGCCATGCTGGGCCTCACGGATGCACAGGTGA...GGTCTTGGCATAAGGACTTGCTGCACTTAGGAGGCCTTTAACTTGTAAATAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CCA 90 bp | CAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGAACATTGCTTTCGGTCTGGCTTaGTCACGTACTTCTGGATCT | + |
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Preference number: 4 (lower is better) Translates to: QVLMPRPLVLRGTVPPNIAFGLA*SRTSGS Trigger: AGATCCAGAAGTACGTGACCAAGCCAGACCGAAAGC...AATGTTCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR GCA 90 bp | CTGGTGCTCAGAGGAACAGTTCCACCGAACATTTCACAGTGTGAGCTGCTTAGGTCCAGGCCTTTTCTTTaGAGGTTGGAAAAGACAGCA | + |
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Preference number: 4 (lower is better) Translates to: LVLRGTVPPNISQCELLRSRPFL*RLEKTA Trigger: TGCTGTCTTTTCCAACCTGCAAAGAAAAGGCCTGGA...CCTAAGCAGCTCACACTGTGAAATGTTCGGTGGAACTGTTCCTCTGAGCACCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR GCA 90 bp | TTTTATTTACAAGTTAAAGGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGACCTGCGCCTCCTTAGAGTaGCGCCACTTCATCCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: FYLQVKGLLSAASPYAKTCASLE*RHFILR Trigger: CCGGAGGATGAAGTGGCGGCACTCTAAGGAGGCGCA...GGTCTTGGCATAAGGACTTGCTGCACTTAGGAGGCCTTTAACTTGTAAATAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CCA 90 bp | TGGTGCTCAGAGGAACAGTTCCACCGAACATTTCACAGTGTGAGCTGCTTAGGTCTTTTCTTTGCAGGTTaGAAAAGACAGCACGGGACC | + |
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Preference number: 4 (lower is better) Translates to: WCSEEQFHRTFHSVSCLGLFFAG*KRQHGT Trigger: GGTCCCGTGCTGTCTTTTCCAACCTGCAAAGAAAAG...ACCTAAGCAGCTCACACTGTGAAATGTTCGGTGGAACTGTTCCTCTGAGCACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CCA 90 bp | TGGTGCTCAGAGGAACAGTTCCACCGAACATTTCACAGTGTGAGCTGCTTAGGTTTGGTCACGTACTTCTaGATCTCAAACCTCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: WCSEEQFHRTFHSVSCLGLVTYF*ISNLFS Trigger: GGAGAAGAGGTTTGAGATCCAGAAGTACGTGACCAA...ACCTAAGCAGCTCACACTGTGAAATGTTCGGTGGAACTGTTCCTCTGAGCACCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CCA 90 bp | TGGTGCTCAGAGGAACAGTTCCACCGAACATTTCACAGTGTGAGCTGCTTAGGTGCCTTCCTTAACTTTTaGGTCAAATTCCGCAGACAA | + |
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Preference number: 4 (lower is better) Translates to: WCSEEQFHRTFHSVSCLGAFLNF*VKFRRQ Trigger: TTGTCTGCGGAATTTGACCCAAAAGTTAAGGAAGGC...ACCTAAGCAGCTCACACTGTGAAATGTTCGGTGGAACTGTTCCTCTGAGCACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CCA 90 bp | ACATTTTATTTACAAGTTAAAGGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGCCGCTTGTATGTCTGTaGCATGGTGTCCTTAGTGAG | + |
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Preference number: 4 (lower is better) Translates to: TFYLQVKGLLSAASPYAKPLVCL*HGVLSE Trigger: CTCACTAAGGACACCATGCCACAGACATACAAGCGG...CTTGGCATAAGGACTTGCTGCACTTAGGAGGCCTTTAACTTGTAAATAAAATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS TCA 90 bp | CGACGCCGGCGTGCAGGATGTCCGCGATGCAGAAAGAGGGTTTCTTaGCAGCGGCTGGGTCCAGGGCGAAGGAGCAGCCGCCCGGGCCCG | + |
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Preference number: 5 (lower is better) Translates to: RRRRAGCPRCRKRVS*QRLGPGRRSSRPGP Trigger: CGGGCCCGGGCGGCTGCTCCTTCGCCCTGGACCCAGCCGCTGTCAAGAAACCCTCTTTCTGCATCGCGGACATCCTGCACGCCGGCGTCG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS GCA 90 bp | GTCGGTGGCTGCAGGGAGACCGCCCGGGGTGGAGGCGGGGGCTGCTaGTGCGGTTGCTGTTGCTGCGTTGGTGATTGCTGCGGGAGATGC | + |
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Preference number: 5 (lower is better) Translates to: VGGCRETARGGGGGC*CGCCCCVGDCCGRC Trigger: GCATCTCCCGCAGCAATCACCAACGCAGCAACAGCAACCGCAGCAGCAGCCCCCGCCTCCACCCCGGGCGGTCTCCCTGCAGCCACCGAC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CCA 90 bp | ACTCCGAGTCACTGCTCTCGCTCTCGGCTTCGCCCTCAGAACGGCTaGGGCTCCTCTCCTCCCGTTCACCCTCGGCGGGGACTCCGCCGG | + |
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Preference number: 5 (lower is better) Translates to: TPSHCSRSRLRPQNG*GSSPPVHPRRGLRR Trigger: CCGGCGGAGTCCCCGCCGAGGGTGAACGGGAGGAGAGGAGCCCCAGCCGTTCTGAGGGCGAAGCCGAGAGCGAGAGCAGTGACTCGGAGT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS GCA 90 bp | GAAGTCGGTGGCTGCAGGGAGACCGCCCGGGGTGGAGGCGGGGGCTaGTGCTGCGGTTGCTGTTGCTGCGTTGGTGATTGCTGCGGGAGA | + |
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Preference number: 5 (lower is better) Translates to: EVGGCRETARGGGGG*CCGCCCCVGDCCGR Trigger: TCTCCCGCAGCAATCACCAACGCAGCAACAGCAACCGCAGCAGCAGCCCCCGCCTCCACCCCGGGCGGTCTCCCTGCAGCCACCGACTTC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS TCA 90 bp | GGCGAAGGAGCAGCCGCCCGGGCCCGCCGAGGAGCAGTAGGCGGCTaGCCAGAGACTAAAGTTGGAAGCATAGAAGGGAGCCAGGCCGGC | + |
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Preference number: 5 (lower is better) Translates to: GEGAAARARRGAVGG*PETKVGSIEGSQAG Trigger: GCCGGCCTGGCTCCCTTCTATGCTTCCAACTTTAGTCTCTGGTCAGCCGCCTACTGCTCCTCGGCGGGCCCGGGCGGCTGCTCCTTCGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS TCA 90 bp | CTGCAAGCGGGGCCTGGGCGATCTCCGGGCTTTGAGGACTGCTGGTaGCTGAGGGCTGGTGAGCCGAAGGCAGCTCCGAGCAGTTGCCGC | + |
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Preference number: 5 (lower is better) Translates to: LQAGPGRSPGFEDCW*LRAGEPKAAPSSCR Trigger: GCGGCAACTGCTCGGAGCTGCCTTCGGCTCACCAGCCCTCAGTCACCAGCAGTCCTCAAAGCCCGGAGATCGCCCAGGCCCCGCTTGCAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS CCA 90 bp | GTGCAGGATGTCCGCGATGCAGAAAGAGGGTTTCTTGACAGCGGCTaGGTCCAGGGCGAAGGAGCAGCCGCCCGGGCCCGCCGAGGAGCA | + |
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Preference number: 5 (lower is better) Translates to: VQDVRDAERGFLDSG*VQGEGAAARARRGA Trigger: TGCTCCTCGGCGGGCCCGGGCGGCTGCTCCTTCGCCCTGGACCCAGCCGCTGTCAAGAAACCCTCTTTCTGCATCGCGGACATCCTGCAC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS GCA 90 bp | TCCGTTCCGTGTCGCTGGGGGCCATGTCCAGGGACTCCGAGTCACTaGTCTCGCTCTCGGCTTCGCCCTCAGAACGGCTGGGGCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: SVPCRWGPCPGTPSH*SRSRLRPQNGWGSS Trigger: AGAGGAGCCCCAGCCGTTCTGAGGGCGAAGCCGAGAGCGAGAGCAGTGACTCGGAGTCCCTGGACATGGCCCCCAGCGACACGGAACGGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CCA 90 bp | GGCAGCTCCGAGCAGTTGCCGCCAAGGCTGCTGGCGCTCCCCACGTaGGTGTTGCCGCTACCCAGGCTGCTGGTGCTGCTGAAACTGAAG | + |
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Preference number: 5 (lower is better) Translates to: GSSEQLPPRLLALPT*VLPLPRLLVLLKLK Trigger: CTTCAGTTTCAGCAGCACCAGCAGCCTGGGTAGCGGCAACACCCACGTGGGGAGCGCCAGCAGCCTTGGCGGCAACTGCTCGGAGCTGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS TCA 90 bp | GCAGTGATGAGGGCACCCGCGGCTGAGGCCTTGATGACCGTGGTTTaGTGCAGGGACCTCTCCGTTCCCTCAGTCCGTTCCGTGTCGCTG | + |
|
Preference number: 5 (lower is better) Translates to: AVMRAPAAEALMTVV*CRDLSVPSVRSVSL Trigger: CAGCGACACGGAACGGACTGAGGGAACGGAGAGGTCCCTGCATCAAACCACGGTCATCAAGGCCTCAGCCGCGGGTGCCCTCATCACTGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS TCA 90 bp | GCTACCACTCGTGCTGCTGCTGGCAGTGATGAGGGCACCCGCGGCTaGGGCCTTGATGACCGTGGTTTGATGCAGGGACCTCTCCGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: ATTRAAAGSDEGTRG*GLDDRGLMQGPLRS Trigger: GGAACGGAGAGGTCCCTGCATCAAACCACGGTCATCAAGGCCTCAGCCGCGGGTGCCCTCATCACTGCCAGCAGCAGCACGAGTGGTAGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS GCA 90 bp | ACTCCGCCGGAAGGCTTCTCGCCCGCTTCCTTGTCCTTGTCCTTCTaGGCCTGCGCCTCCTTAGAGTGCCGCCACTTCATCCTCCGGTTC | + |
|
Preference number: 5 (lower is better) Translates to: TPPEGFSPASLSLSF*ACASLECRHFILRF Trigger: GAACCGGAGGATGAAGTGGCGGCACTCTAAGGAGGCGCAGGCGCAGAAGGACAAGGACAAGGAAGCGGGCGAGAAGCCTTCCGGCGGAGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CCA 90 bp | TTTGATGCAGGGACCTCTCCGTTCCCTCAGTCCGTTCCGTGTCGCTaGGGGCCATGTCCAGGGACTCCGAGTCACTGCTCTCGCTCTCGG | + |
|
Preference number: 5 (lower is better) Translates to: FDAGTSPFPQSVPCR*GPCPGTPSHCSRSR Trigger: CCGAGAGCGAGAGCAGTGACTCGGAGTCCCTGGACATGGCCCCCAGCGACACGGAACGGACTGAGGGAACGGAGAGGTCCCTGCATCAAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS GCA 90 bp | AGAGATGCGAAGAACTGTCCCGCTGAAGGCTGCAGGCCAGCTAGATaGACCCCTGCAGGCCGCCCACCGGTTAGCAGCGATGTGAGATCT | + |
|
Preference number: 5 (lower is better) Translates to: RDAKNCPAEGCRPAR*TPAGRPPVSSDVRS Trigger: AGATCTCACATCGCTGCTAACCGGTGGGCGGCCTGCAGGGGTGCATCTAGCTGGCCTGCAGCCTTCAGCGGGACAGTTCTTCGCATCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS GCA 90 bp | TCGCTAATGGGATCTAGAGATGCGAAGAACTGTCCCGCTGAAGGCTaGAGGCCAGCTAGATGCACCCCTGCAGGCCGCCCACCGGTTAGC | + |
|
Preference number: 5 (lower is better) Translates to: SLMGSRDAKNCPAEG*RPARCTPAGRPPVS Trigger: GCTAACCGGTGGGCGGCCTGCAGGGGTGCATCTAGCTGGCCTGCAGCCTTCAGCGGGACAGTTCTTCGCATCTCTAGATCCCATTAGCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CCA 90 bp | TTTGATGCAGGGACCTCTCCGTTCCCTCAGTCCGTTCCGTGTCGCTaGGGGCCATGTCCAGGGACTCCGAGTCACTGCTCTCAGAGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: FDAGTSPFPQSVPCR*GPCPGTPSHCSQSV Trigger: AACACTCTGAGAGCAGTGACTCGGAGTCCCTGGACATGGCCCCCAGCGACACGGAACGGACTGAGGGAACGGAGAGGTCCCTGCATCAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174257.3 |
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| CDS-3UTR CAA 90 bp | GGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACTTCTCGCCCGCTTCCTaGTCCTTGTCCTTCTGCGCC | + |
|
Preference number: 5 (lower is better) Translates to: GLLSAASPYAKTPGAQRNFSPAS*SLSFCA Trigger: GGCGCAGAAGGACAAGGACAAGGAAGCGGGCGAGAA...GTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACTTAGGAGGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CAA 90 bp | AGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCCCAAATTTGAGGTCTTaGCTGGAGGGGGCAGGGGCG | + |
|
Preference number: 5 (lower is better) Translates to: SAASPYAKTPGAQRNSSTPNLRS*LEGAGA Trigger: CGCCCCTGCCCCCTCCAGCAAAGACCTCAAATTTGG...GGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CCA 90 bp | GGAAAAGACAGCACGGGACCACGAGCGCTTCCGCTTGTATGTCTGTaGCATGGTGTCCTTAGTGAGCACAGCATAGGGACCTGGAAATGT | + |
|
Preference number: 5 (lower is better) Translates to: GKDSTGPRALPLVCL*HGVLSEHSIGTWKC Trigger: ACATTTCCAGGTCCCTATGCTGTGCTCACTAAGGACACCATGCCACAGACATACAAGCGGAAGCGCTCGTGGTCCCGTGCTGTCTTTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CAA 90 bp | GTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGCTCCAGGCCTTTTCTTaGCAGGTTGGAAAAGACAGC | + |
|
Preference number: 5 (lower is better) Translates to: VQQVLMPRPLVLRGTVPPLQAFS*QVGKDS Trigger: GCTGTCTTTTCCAACCTGCAAAGAAAAGGCCTGGAG...CGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CAA 90 bp | TGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGACCTTTTCTTTGCAGGTaGGAAAAGACAGCACGGGAC | + |
|
Preference number: 5 (lower is better) Translates to: CSKSLCQDPWCSEEQFHRPFLCR*EKTARD Trigger: GTCCCGTGCTGTCTTTTCCAACCTGCAAAGAAAAGG...TCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CAA 90 bp | GCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGAACATACAGAATTTCTTGGGTaGGAGCTTAAGGGGCTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: ASPYAKTPGAQRNSSTEHTEFLG*ELKGLR Trigger: CCTCAGCCCCTTAAGCTCCAACCCAAGAAATTCTGT...ATGTTCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CAA 90 bp | CAAGTTAAAGGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTTGCTTTCGGTCTGGCTaGGTCACGTACTTCTGGATC | + |
|
Preference number: 5 (lower is better) Translates to: QVKGLLSAASPYAKTPGACFRSG*VTYFWI Trigger: GATCCAGAAGTACGTGACCAAGCCAGACCGAAAGCA...AGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACTTAGGAGGCCTTTAACTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CAA 90 bp | AAAGGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGACTGCTCTCAGAGTGTaGCCTTCCTTAACTTTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: KGLLSAASPYAKTPGAQRTALRV*PSLTFG Trigger: CCCAAAAGTTAAGGAAGGCAACACTCTGAGAGCAGT...CCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTGCTGCACTTAGGAGGCCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174257.3 |
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| CDS-3UTR CAA 90 bp | CAAGTCCTTATGCCAAGACCCCTGGTGCTCAGAGGAACAGTTCCACCGAACATTCGATCGATACCAAATTaGAGGTCTTTGCTGGAGGGG | + |
|
Preference number: 5 (lower is better) Translates to: QVLMPRPLVLRGTVPPNIRSIPN*RSLLEG Trigger: CCCCTCCAGCAAAGACCTCAAATTTGGTATCGATCG...AATGTTCGGTGGAACTGTTCCTCTGAGCACCAGGGGTCTTGGCATAAGGACTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS-3UTR CAA 90 bp | TTTTATTTACAAGTTAAAGGCCTCCTAAGTGCAGCAAGTCCTTATGCCAAGACCGCTGAACAGAATTTCTaGGGTTGGAGCTTAAGGGGC | + |
|
Preference number: 5 (lower is better) Translates to: FYLQVKGLLSAASPYAKTAEQNF*GWSLRG Trigger: GCCCCTTAAGCTCCAACCCAAGAAATTCTGTTCAGC...GGTCTTGGCATAAGGACTTGCTGCACTTAGGAGGCCTTTAACTTGTAAATAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS TCA 72 bp | AGGAGGCGTGCGGGTGCACGGAGCCCAAGTGTGCGGTaGGGGCTGCCGAGGCCCCCACCAGTCCCTCTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: RRRAGARSPSVR*GLPRPPPVPLQ Trigger: CTGCAGAGGGACTGGTGGGGGCCTCGGCAGCCCTCACCGCACACTTGGGCTCCGTGCACCCGCACGCCTCCT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CAA 90 bp | CCGACGCCGGCGTGCAGGATGTCCGCGATGCAGAAAGAGGGTTTCTaGACAGCGGCTGGGTCCAGGGCGAAGGAGCAGCCGCCCGGGCCC | + |
|
Preference number: 6 (lower is better) Translates to: PTPACRMSAMQKEGF*TAAGSRAKEQPPGP Trigger: GGGCCCGGGCGGCTGCTCCTTCGCCCTGGACCCAGCCGCTGTCAAGAAACCCTCTTTCTGCATCGCGGACATCCTGCACGCCGGCGTCGG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS TCA 72 bp | TGCTGGTGGAAGGCGGCAGAGAGCGGAGACAGCCGCTaGGGGAAGCCAGCCGGGACTTCTGAGGGCGCCACC | + |
|
Preference number: 6 (lower is better) Translates to: CWWKAAESGDSR*GKPAGTSEGAT Trigger: GGTGGCGCCCTCAGAAGTCCCGGCTGGCTTCCCTCAGCGGCTGTCTCCGCTCTCTGCCGCCTTCCACCAGCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CCA 72 bp | CACTGCTCTCGCTCTCGGCTTCGCCCTCAGAACGGCTaGGGCTCCTCTCCTCCCGTTCACCCTCGGCGGGGA | + |
|
Preference number: 6 (lower is better) Translates to: HCSRSRLRPQNG*GSSPPVHPRRG Trigger: TCCCCGCCGAGGGTGAACGGGAGGAGAGGAGCCCCAGCCGTTCTGAGGGCGAAGCCGAGAGCGAGAGCAGTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CCA 72 bp | GAGCAGTTGCCGCCAAGGCTGCTGGCGCTCCCCACGTaGGTGTTGCCGCTACCCAGGCTGCTGGTGCTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: EQLPPRLLALPT*VLPLPRLLVLL Trigger: CAGCAGCACCAGCAGCCTGGGTAGCGGCAACACCCACGTGGGGAGCGCCAGCAGCCTTGGCGGCAACTGCTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS CAA 90 bp | TCACCCTCGGCGGGGACTCCGCCGGAAGGCTTCTCGCCCGCTTCCTaGTCCTTGTCCTTCTGCGCCTGCGCCTCCTTAGAGTGCCGCCAC | + |
|
Preference number: 6 (lower is better) Translates to: SPSAGTPPEGFSPAS*SLSFCACASLECRH Trigger: GTGGCGGCACTCTAAGGAGGCGCAGGCGCAGAAGGACAAGGACAAGGAAGCGGGCGAGAAGCCTTCCGGCGGAGTCCCCGCCGAGGGTGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS TCA 72 bp | GGGCCTGGGCGATCTCCGGGCTTTGAGGACTGCTGGTaGCTGAGGGCTGGTGAGCCGAAGGCAGCTCCGAGC | + |
|
Preference number: 6 (lower is better) Translates to: GPGRSPGFEDCW*LRAGEPKAAPS Trigger: GCTCGGAGCTGCCTTCGGCTCACCAGCCCTCAGTCACCAGCAGTCCTCAAAGCCCGGAGATCGCCCAGGCCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS GCA 72 bp | TGTCGCTGGGGGCCATGTCCAGGGACTCCGAGTCACTaGTCTCGCTCTCGGCTTCGCCCTCAGAACGGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: CRWGPCPGTPSH*SRSRLRPQNGW Trigger: CCAGCCGTTCTGAGGGCGAAGCCGAGAGCGAGAGCAGTGACTCGGAGTCCCTGGACATGGCCCCCAGCGACA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CAA 72 bp | GCGGGGACTCCGCCGGAAGGCTTCTCGCCCGCTTCCTaGTCCTTGTCCTTCTGCGCCTGCGCCTCCTTAGAG | + |
|
Preference number: 6 (lower is better) Translates to: AGTPPEGFSPAS*SLSFCACASLE Trigger: CTCTAAGGAGGCGCAGGCGCAGAAGGACAAGGACAAGGAAGCGGGCGAGAAGCCTTCCGGCGGAGTCCCCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CAA 72 bp | TTGCCGCCAAGGCTGCTGGCGCTCCCCACGTGGGTGTaGCCGCTACCCAGGCTGCTGGTGCTGCTGAAACTG | + |
|
Preference number: 6 (lower is better) Translates to: LPPRLLALPTWV*PLPRLLVLLKL Trigger: CAGTTTCAGCAGCACCAGCAGCCTGGGTAGCGGCAACACCCACGTGGGGAGCGCCAGCAGCCTTGGCGGCAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS CAA 90 bp | TCGGCGGGGACTCCGCCGGAAGGCTTCTCGCCCGCTTCCTTGTCCTaGTCCTTCTGCGCCTGCGCCTCCTTAGAGTGCCGCCACTTCATC | + |
|
Preference number: 6 (lower is better) Translates to: SAGTPPEGFSPASLS*SFCACASLECRHFI Trigger: GATGAAGTGGCGGCACTCTAAGGAGGCGCAGGCGCAGAAGGACAAGGACAAGGAAGCGGGCGAGAAGCCTTCCGGCGGAGTCCCCGCCGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CCA 72 bp | GGGACCTCTCCGTTCCCTCAGTCCGTTCCGTGTCGCTaGGGGCCATGTCCAGGGACTCCGAGTCACTGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: GTSPFPQSVPCR*GPCPGTPSHCS Trigger: AGAGCAGTGACTCGGAGTCCCTGGACATGGCCCCCAGCGACACGGAACGGACTGAGGGAACGGAGAGGTCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS CAA 72 bp | ACTCCGCCGGAAGGCTTCTCGCCCGCTTCCTTGTCCTaGTCCTTCTGCGCCTGCGCCTCCTTAGAGTGCCGC | + |
|
Preference number: 6 (lower is better) Translates to: TPPEGFSPASLS*SFCACASLECR Trigger: GCGGCACTCTAAGGAGGCGCAGGCGCAGAAGGACAAGGACAAGGAAGCGGGCGAGAAGCCTTCCGGCGGAGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CAA 90 bp | TCCGAGCAGTTGCCGCCAAGGCTGCTGGCGCTCCCCACGTGGGTGTaGCCGCTACCCAGGCTGCTGGTGCTGCTGAAACTGAAGCTGCTA | + |
|
Preference number: 6 (lower is better) Translates to: SEQLPPRLLALPTWV*PLPRLLVLLKLKLL Trigger: TAGCAGCTTCAGTTTCAGCAGCACCAGCAGCCTGGGTAGCGGCAACACCCACGTGGGGAGCGCCAGCAGCCTTGGCGGCAACTGCTCGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS TCA 72 bp | CGTGCAGGATGTCCGCGATGCAGAAAGAGGGTTTCTTaGCAGCGGCTGGGTCCAGGGCGAAGGAGCAGCCGC | + |
|
Preference number: 6 (lower is better) Translates to: RAGCPRCRKRVS*QRLGPGRRSSR Trigger: GCGGCTGCTCCTTCGCCCTGGACCCAGCCGCTGTCAAGAAACCCTCTTTCTGCATCGCGGACATCCTGCACG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS TCA 72 bp | AGGGCACCCGCGGCTGAGGCCTTGATGACCGTGGTTTaGTGCAGGGACCTCTCCGTTCCCTCAGTCCGTTCC | + |
|
Preference number: 6 (lower is better) Translates to: RAPAAEALMTVV*CRDLSVPSVRS Trigger: GGAACGGACTGAGGGAACGGAGAGGTCCCTGCATCAAACCACGGTCATCAAGGCCTCAGCCGCGGGTGCCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048572.7 ENSMUST00000174257.3 |
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| CDS GCA 72 bp | GGCTGCTGCTGCGGTTGCTGTTGCTGCGTTGGTGATTaGTGCGGGAGATGCTGGTGGAAGGCGGCAGAGAGC | + |
|
Preference number: 6 (lower is better) Translates to: GCCCGCCCCVGD*CGRCWWKAAES Trigger: GCTCTCTGCCGCCTTCCACCAGCATCTCCCGCAGCAATCACCAACGCAGCAACAGCAACCGCAGCAGCAGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS GCA 72 bp | AAGAACTGTCCCGCTGAAGGCTGCAGGCCAGCTAGATaGACCCCTGCAGGCCGCCCACCGGTTAGCAGCGAT | + |
|
Preference number: 6 (lower is better) Translates to: KNCPAEGCRPAR*TPAGRPPVSSD Trigger: ATCGCTGCTAACCGGTGGGCGGCCTGCAGGGGTGCATCTAGCTGGCCTGCAGCCTTCAGCGGGACAGTTCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CAA 72 bp | GCGTGCAGGATGTCCGCGATGCAGAAAGAGGGTTTCTaGACAGCGGCTGGGTCCAGGGCGAAGGAGCAGCCG | + |
|
Preference number: 6 (lower is better) Translates to: ACRMSAMQKEGF*TAAGSRAKEQP Trigger: CGGCTGCTCCTTCGCCCTGGACCCAGCCGCTGTCAAGAAACCCTCTTTCTGCATCGCGGACATCCTGCACGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS GCA 72 bp | TGCTGCTGCGGTTGCTGTTGCTGCGTTGGTGATTGCTaGGGGAGATGCTGGTGGAAGGCGGCAGAGAGCGGA | + |
|
Preference number: 6 (lower is better) Translates to: CCCGCCCCVGDC*GRCWWKAAESG Trigger: TCCGCTCTCTGCCGCCTTCCACCAGCATCTCCCGCAGCAATCACCAACGCAGCAACAGCAACCGCAGCAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS GCA 72 bp | GGATCTAGAGATGCGAAGAACTGTCCCGCTGAAGGCTaGAGGCCAGCTAGATGCACCCCTGCAGGCCGCCCA | + |
|
Preference number: 6 (lower is better) Translates to: GSRDAKNCPAEG*RPARCTPAGRP Trigger: TGGGCGGCCTGCAGGGGTGCATCTAGCTGGCCTGCAGCCTTCAGCGGGACAGTTCTTCGCATCTCTAGATCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS GCA 72 bp | TTCTCGCCCGCTTCCTTGTCCTTGTCCTTCTGCGCCTaGGCCTCCTTAGAGTGCCGCCACTTCATCCTCCGG | + |
|
Preference number: 6 (lower is better) Translates to: FSPASLSLSFCA*ASLECRHFILR Trigger: CCGGAGGATGAAGTGGCGGCACTCTAAGGAGGCGCAGGCGCAGAAGGACAAGGACAAGGAAGCGGGCGAGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CCA 72 bp | AGCACGGGACCACGAGCGCTTCCGCTTGTATGTCTGTaGCATGGTGTCCTTAGTGAGCACAGCATAGGGACC | + |
|
Preference number: 6 (lower is better) Translates to: STGPRALPLVCL*HGVLSEHSIGT Trigger: GGTCCCTATGCTGTGCTCACTAAGGACACCATGCCACAGACATACAAGCGGAAGCGCTCGTGGTCCCGTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CCA 72 bp | TCTCAAACCTCTTCTCCAGGCCTTTTCTTTGCAGGTTaGAAAAGACAGCACGGGACCACGAGCGCTTCCGCT | + |
|
Preference number: 6 (lower is better) Translates to: SQTSSPGLFFAG*KRQHGTTSASA Trigger: AGCGGAAGCGCTCGTGGTCCCGTGCTGTCTTTTCCAACCTGCAAAGAAAAGGCCTGGAGAAGAGGTTTGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CAA 72 bp | TTGGAAAAGACAGCACGGGACCACGAGCGCTTCCGCTaGTATGTCTGTGGCATGGTGTCCTTAGTGAGCACA | + |
|
Preference number: 6 (lower is better) Translates to: LEKTARDHERFR*YVCGMVSLVST Trigger: TGTGCTCACTAAGGACACCATGCCACAGACATACAAGCGGAAGCGCTCGTGGTCCCGTGCTGTCTTTTCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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| CDS CAA 72 bp | ATCTCAAACCTCTTCTCCAGGCCTTTTCTTTGCAGGTaGGAAAAGACAGCACGGGACCACGAGCGCTTCCGC | + |
|
Preference number: 6 (lower is better) Translates to: ISNLFSRPFLCR*EKTARDHERFR Trigger: GCGGAAGCGCTCGTGGTCCCGTGCTGTCTTTTCCAACCTGCAAAGAAAAGGCCTGGAGAAGAGGTTTGAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048572.7 |
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