Pregenerated sensors for HK2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000628Ensembl transcript IDs: ENSMUST00000000642.11, ENSMUST00000170833.2
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTCTCCATCCCTGCCTCGCATACACCTCACGGAGCAGAGGAAGGTaGAGCCCGGAGGCTGGTGGCGCTCTGCCCATCACTCACCAAGAG | + |
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Preference number: 1 (lower is better) Translates to: CLHPCLAYTSRSRGR*SPEAGGALPITHQE Trigger: CTCTTGGTGAGTGATGGGCAGAGCGCCACCAGCCTCCGGGCTTCACCTTCCTCTGCTCCGTGAGGTGTATGCGAGGCAGGGATGGAGACA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CCA 90 bp | ACACCAGACAGGCAGTATCAGGCAGGAATCACTCGACCTTCCCTCTaGGCATCCCGGGAGGACCTGGGCAGCCTTCATTTCACTGTACAC | + |
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Preference number: 1 (lower is better) Translates to: TPDRQYQAGITRPSL*ASREDLGSLHFTVH Trigger: GTGTACAGTGAAATGAAGGCTGCCCAGGTCCTCCCGGGATGCCCAGAGGGAAGGTCGAGTGATTCCTGCCTGATACTGCCTGTCTGGTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR TCA 90 bp | CCAGGACAGCAAATGTTTAGAACCAGCAGGGTGATGCCTACAGGTTaGGCTGAAGAGGGACAGCCATGTAGGCCAGGGGACGTTCCATAC | + |
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Preference number: 1 (lower is better) Translates to: PGQQMFRTSRVMPTG*AEEGQPCRPGDVPY Trigger: GTATGGAACGTCCCCTGGCCTACATGGCTGTCCCTCTTCAGCTCAACCTGTAGGCATCACCCTGCTGGTTCTAAACATTTGCTGTCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR GCA 90 bp | CTAGGCTCTGCTCAGCACAAGTCTGAAAGATGTTCAAAACATGGCTaGCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTTTTGACCCCC | + |
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Preference number: 1 (lower is better) Translates to: LGSAQHKSERCSKHG*HDAELSLGLSLLTP Trigger: GGGGGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCCATGTTTTGAACATCTTTCAGACTTGTGCTGAGCAGAGCCTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CAA 90 bp | GGTGAGACCTCACTCAGGAAAGCTTCTGGACGGAGCAGCCAGGTGTaGTGGCTTCTTTCCCTCAGCGAACCACCCTGTCTCCATCCCTGC | + |
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Preference number: 2 (lower is better) Translates to: GETSLRKASGRSSQV*WLLSLSEPPCLHPC Trigger: GCAGGGATGGAGACAGGGTGGTTCGCTGAGGGAAAGAAGCCACAACACCTGGCTGCTCCGTCCAGAAGCTTTCCTGAGTGAGGTCTCACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR TCA 90 bp | ACCTTCCCTCTGGGCATCCCGGGAGGACCTGGGCAGCCTTCATTTCACTGTACATCTGCTGCTCATAGATaGCCCGTTCAGCCGTGTGAG | + |
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Preference number: 2 (lower is better) Translates to: TFPLGIPGGPGQPSFHCTSAAHR*PVQPCE Trigger: CTCACACGGCTGAACGGGTCATCTATGAGCAGCAGA...TGTACAGTGAAATGAAGGCTGCCCAGGTCCTCCCGGGATGCCCAGAGGGAAGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR GCA 90 bp | GCTGGCAGTAGCCAGCCTAGTACTAGGAACACAGCACACTGTCTCATGCTCTGGCCCTGTCTCCATCCCTaGCTCGCATACACCTCACGG | + |
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Preference number: 2 (lower is better) Translates to: AGSSQPSTRNTAHCLMLWPCLHP*LAYTSR Trigger: CCGTGAGGTGTATGCGAGGCAGGGATGGAGACAGGG...CCAGAGCATGAGACAGTGTGCTGTGTTCCTAGTACTAGGCTGGCTACTGCCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR TCA 90 bp | AGTAGCCAGCCTAGTACTAGGAACACAGCACACTGTCTCATGCTCTGGATTGAACGGAGCAGAGGAAGGTaGAGCCCGGAGGCTGGTGGC | + |
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Preference number: 2 (lower is better) Translates to: SSQPSTRNTAHCLMLWIERSRGR*SPEAGG Trigger: GCCACCAGCCTCCGGGCTTCACCTTCCTCTGCTCCG...TTCAATCCAGAGCATGAGACAGTGTGCTGTGTTCCTAGTACTAGGCTGGCTACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR TCA 90 bp | CTTCCTCCTCCTCCTCCCTCCCTCCCAATGCCTGATCTGATGACAGAAGTATCAGAACATGCCAGGAAGTaGCCAGCAGGAACAACTTGT | + |
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Preference number: 2 (lower is better) Translates to: LPPPPPSLPMPDLMTEVSEHARK*PAGTTC Trigger: ACAAGTTGTTCCTGCTGGTCACTTCCTGGCATGTTC...TGATACTTCTGTCATCAGATCAGGCATTGGGAGGGAGGGAGGAGGAGGAGGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR GCA 90 bp | AGACCGAGTGCCCAGGGATATGAGATGAGTCAAAGGTTCACTGAAGATCACACAACAGGGGAGGGAACATaGCAGGAAGTGACCAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: RPSAQGYEMSQRFTEDHTTGEGT*QEVTSR Trigger: CCTGCTGGTCACTTCCTGGCATGTTCCCTCCCCTGT...TGTGTGATCTTCAGTGAACCTTTGACTCATCTCATATCCCTGGGCACTCGGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR CCA 90 bp | GGCTGCCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTTTTGACCCCCGTATCTAGCAGCCAGGTGTTGTaGCTTCTTTCCCTCAGCGAA | + |
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Preference number: 2 (lower is better) Translates to: GCHDAELSLGLSLLTPVSSSQVL*LLSLSE Trigger: TTCGCTGAGGGAAAGAAGCCACAACACCTGGCTGCT...AGATACGGGGGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR TCA 90 bp | CCCCTAGTGCTGCACACATCTATAGGTGGCTTCGGCTTTCAGTGGTCTGCTTCGGGAGAAGTGAACTTTTaGATTCAGAGCGAACCGTGT | + |
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Preference number: 2 (lower is better) Translates to: PLVLHTSIGGFGFQWSASGEVNF*IQSEPC Trigger: ACACGGTTCGCTCTGAATTCAAAAGTTCACTTCTCC...CGAAGCAGACCACTGAAAGCCGAAGCCACCTATAGATGTGTGCAGCACTAGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR GCA 90 bp | AGCCACAGACACTTGAAGGGGGTGTCGAGTCTAGCTTTGGTTTGGGTTCCTCTATCTCTGCCAAGGAAATaGCAAGAGGTCCATCTCCTC | + |
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Preference number: 2 (lower is better) Translates to: SHRHLKGVSSLALVWVPLSLPRK*QEVHLL Trigger: GAGGAGATGGACCTCTTGGCATTTCCTTGGCAGAGA...TAGAGGAACCCAAACCAAAGCTAGACTCGACACCCCCTTCAAGTGTCTGTGGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR GCA 90 bp | AGGTGGCTACCCCCTAGTGCTGCACACATCTATAGGTGGCTTCGGCTTTCAGTGTCCTTTGGTTTTCTTTaGCTAACATCCCGGGTGAGA | + |
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Preference number: 2 (lower is better) Translates to: RWLPPSAAHIYRWLRLSVSFGFL*LTSRVR Trigger: TCTCACCCGGGATGTTAGGCAAAGAAAACCAAAGGA...CACTGAAAGCCGAAGCCACCTATAGATGTGTGCAGCACTAGGGGGTAGCCACCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR CCA 90 bp | AGGTGGCTACCCCCTAGTGCTGCACACATCTATAGGTGGCTTCGGCTTTCAGTGAGGAAGGCCAAGGATTaGGTATCAAACTCTACAGTG | + |
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Preference number: 2 (lower is better) Translates to: RWLPPSAAHIYRWLRLSVRKAKD*VSNSTV Trigger: CACTGTAGAGTTTGATACCCAATCCTTGGCCTTCCT...CACTGAAAGCCGAAGCCACCTATAGATGTGTGCAGCACTAGGGGGTAGCCACCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR TCA 90 bp | TCAAAACATGGCTGCCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTTTTGACCTTTAAAACAGGGAAGTaGGGAAGCAGGGAAGTCCCG | + |
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Preference number: 2 (lower is better) Translates to: SKHGCHDAELSLGLSLLTFKTGK*GSREVP Trigger: CGGGACTTCCCTGCTTCCTCACTTCCCTGTTTTAAA...GGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCCATGTTTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR TCA 90 bp | AGGTGGCTACCCCCTAGTGCTGCACACATCTATAGGTGGCTTCGGCTTTCAGTGACATCTTCTATGCAGTaGGAACTTGAAACAAATCCT | + |
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Preference number: 2 (lower is better) Translates to: RWLPPSAAHIYRWLRLSVTSSMQ*ELETNP Trigger: AGGATTTGTTTCAAGTTCTCACTGCATAGAAGATGT...CACTGAAAGCCGAAGCCACCTATAGATGTGTGCAGCACTAGGGGGTAGCCACCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR CCA 90 bp | AAGGCTGTTTCCTCTTTATTAAACCTATCCAGGTTTAACATTGGTGGTCAATTTCAGAGAACAGGACATTaGTGTCTTCCCGTTCTTCAA | + |
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Preference number: 2 (lower is better) Translates to: KAVSSLLNLSRFNIGGQFQRTGH*CLPVLQ Trigger: TTGAAGAACGGGAAGACACCAATGTCCTGTTCTCTG...AAATTGACCACCAATGTTAAACCTGGATAGGTTTAATAAAGAGGAAACAGCCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR TCA 72 bp | CCCTGCCTCGCATACACCTCACGGAGCAGAGGAAGGTaGAGCCCGGAGGCTGGTGGCGCTCTGCCCATCACT | + |
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Preference number: 3 (lower is better) Translates to: PCLAYTSRSRGR*SPEAGGALPIT Trigger: AGTGATGGGCAGAGCGCCACCAGCCTCCGGGCTTCACCTTCCTCTGCTCCGTGAGGTGTATGCGAGGCAGGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CCA 72 bp | CACCTCACGGAGCAGAGGAAGGTGAAGCCCGGAGGCTaGTGGCGCTCTGCCCATCACTCACCAAGAGATTCC | + |
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Preference number: 3 (lower is better) Translates to: HLTEQRKVKPGG*WRSAHHSPRDS Trigger: GGAATCTCTTGGTGAGTGATGGGCAGAGCGCCACCAGCCTCCGGGCTTCACCTTCCTCTGCTCCGTGAGGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR GCA 72 bp | GCAGAGGAAGGTGAAGCCCGGAGGCTGGTGGCGCTCTaGCCATCACTCACCAAGAGATTCCGAGTCTCTCTT | + |
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Preference number: 3 (lower is better) Translates to: AEEGEARRLVAL*PSLTKRFRVSL Trigger: AAGAGAGACTCGGAATCTCTTGGTGAGTGATGGGCAGAGCGCCACCAGCCTCCGGGCTTCACCTTCCTCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CCA 72 bp | TCACTCGACCTTCCCTCTGGGCATCCCGGGAGGACCTaGGCAGCCTTCATTTCACTGTACACCAGCTTGTTC | + |
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Preference number: 3 (lower is better) Translates to: SLDLPSGHPGRT*AAFISLYTSLF Trigger: GAACAAGCTGGTGTACAGTGAAATGAAGGCTGCCCAGGTCCTCCCGGGATGCCCAGAGGGAAGGTCGAGTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CCA 72 bp | AGGTGGCTACCCCCTAGTGCTGCACACATCTATAGGTaGCTTCGGCTTTCAGTGGTCTGCTTCGGTAACTGC | + |
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Preference number: 3 (lower is better) Translates to: RWLPPSAAHIYR*LRLSVVCFGNC Trigger: GCAGTTACCGAAGCAGACCACTGAAAGCCGAAGCCACCTATAGATGTGTGCAGCACTAGGGGGTAGCCACCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CCA 72 bp | CCGTGGCTACCCTCTAGTGCTGCACACATCTATAGGTaGCTACCCCCTAGTGCTGCACACATCTATAGGTGG | + |
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Preference number: 3 (lower is better) Translates to: PWLPSSAAHIYR*LPPSAAHIYRW Trigger: CCACCTATAGATGTGTGCAGCACTAGGGGGTAGCCACCTATAGATGTGTGCAGCACTAGAGGGTAGCCACGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR TCA 72 bp | CAAATGTTTAGAACCAGCAGGGTGATGCCTACAGGTTaGGCTGAAGAGGGACAGCCATGTAGGCCAGGGGAC | + |
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Preference number: 3 (lower is better) Translates to: QMFRTSRVMPTG*AEEGQPCRPGD Trigger: GTCCCCTGGCCTACATGGCTGTCCCTCTTCAGCTCAACCTGTAGGCATCACCCTGCTGGTTCTAAACATTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR CAA 90 bp | GGCTGCCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTTTTGACCCCCGTATCTGCAGAGAACAGGACATaGGTGTCTTCCCGTTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: GCHDAELSLGLSLLTPVSAENRT*VSSRSS Trigger: TGAAGAACGGGAAGACACCAATGTCCTGTTCTCTGC...AGATACGGGGGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR TCA 72 bp | AAGAGATTCCGAGTCTCTCTTCTTCCCGCGGGTGAATaGGGTATTTCTAGAGCCAGTCAGTGTCTCCACCTC | + |
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Preference number: 3 (lower is better) Translates to: KRFRVSLLPAGE*GISRASQCLHL Trigger: GAGGTGGAGACACTGACTGGCTCTAGAAATACCTCATTCACCCGCGGGAAGAAGAGAGACTCGGAATCTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR TCA 72 bp | TCAGGAAGGCCAAGGATTGGGTATCAAACTCTACAGTaGATATCGGGACAAAAGTCCCAGTCTCTCGGGGTC | + |
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Preference number: 3 (lower is better) Translates to: SGRPRIGYQTLQ*ISGQKSQSLGV Trigger: GACCCCGAGAGACTGGGACTTTTGTCCCGATATTCACTGTAGAGTTTGATACCCAATCCTTGGCCTTCCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR TCA 72 bp | CTATTCCAGGACAGCAAATGTTTAGAACCAGCAGGGTaGTGCCTACAGGTTGAGCTGAAGAGGGACAGCCAT | + |
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Preference number: 3 (lower is better) Translates to: LFQDSKCLEPAG*CLQVELKRDSH Trigger: ATGGCTGTCCCTCTTCAGCTCAACCTGTAGGCATCACCCTGCTGGTTCTAAACATTTGCTGTCCTGGAATAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR TCA 72 bp | CAGGAAGTAGAACAGGGGAGGGAACATGCCAGGAAGTaGCCAGCAGGAACAACTTGTGAACAATTCCTTACT | + |
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Preference number: 3 (lower is better) Translates to: QEVEQGREHARK*PAGTTCEQFLT Trigger: AGTAAGGAATTGTTCACAAGTTGTTCCTGCTGGTCACTTCCTGGCATGTTCCCTCCCCTGTTCTACTTCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR TCA 72 bp | AAACGCTCACTAGACCGAGTGCCCAGGGATATGAGATaGGTCAAAGGTTCACTGAAGATCACACAAAGCAGC | + |
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Preference number: 3 (lower is better) Translates to: KRSLDRVPRDMR*VKGSLKITQSS Trigger: GCTGCTTTGTGTGATCTTCAGTGAACCTTTGACTCATCTCATATCCCTGGGCACTCGGTCTAGTGAGCGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CCA 72 bp | CGTGCATCTCGTGTAAAACACGAGACACACCGGAGGTaGGATCTGCTAGGAGGGCAAATAAATGTACAAACA | + |
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Preference number: 3 (lower is better) Translates to: RASRVKHETHRR*DLLGGQINVQT Trigger: TGTTTGTACATTTATTTGCCCTCCTAGCAGATCCCACCTCCGGTGTGTCTCGTGTTTTACACGAGATGCACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR-3UTR CAA 90 bp | GCTGGCAGTAGCCAGCCTAGTACTAGGAACACAGCACACTGTCTCATGCTCTGGCTATGCAGTGAGAACTaGAAACAAATCCTTTGGTTT | + |
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Preference number: 3 (lower is better) Translates to: AGSSQPSTRNTAHCLMLWLCSEN*KQILWF Trigger: AAACCAAAGGATTTGTTTCAAGTTCTCACTGCATAG...CCAGAGCATGAGACAGTGTGCTGTGTTCCTAGTACTAGGCTGGCTACTGCCAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CCA 72 bp | GAGCGAACCGTGTTGGTAGAGCAGAGAACAGGACATTaGTGTCTTCCCGTTCTTCAAACAGTCTGGAATAAA | + |
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Preference number: 3 (lower is better) Translates to: ERTVLVEQRTGH*CLPVLQTVWNK Trigger: TTTATTCCAGACTGTTTGAAGAACGGGAAGACACCAATGTCCTGTTCTCTGCTCTACCAACACGGTTCGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR GCA 72 bp | GCTCAGCACAAGTCTGAAAGATGTTCAAAACATGGCTaGCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTT | + |
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Preference number: 3 (lower is better) Translates to: AQHKSERCSKHG*HDAELSLGLSL Trigger: AAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCCATGTTTTGAACATCTTTCAGACTTGTGCTGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CCA 72 bp | AGACACTTGAAGGGGGTGTCGAGTCTAGCTTTGGTTTaGGTTCCTCTATTCCAGGACAGCAAATGTTTAGAA | + |
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Preference number: 3 (lower is better) Translates to: RHLKGVSSLALV*VPLFQDSKCLE Trigger: TTCTAAACATTTGCTGTCCTGGAATAGAGGAACCCAAACCAAAGCTAGACTCGACACCCCCTTCAAGTGTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR TCA 72 bp | ATTTCTAGAGCCAGTCAGTGTCTCCACCTCATATCCTaGACTACAATGATCTATCTACTCACAAGGCCGAGT | + |
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Preference number: 3 (lower is better) Translates to: ISRASQCLHLIS*TTMIYLLTRPS Trigger: ACTCGGCCTTGTGAGTAGATAGATCATTGTAGTTCAGGATATGAGGTGGAGACACTGACTGGCTCTAGAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR TCA 72 bp | TTCTCTCGATGCTTCATGTGGTCTGCTCCAACGATCTaGTGTGACTTTAAAAACATTTTCGCTGGCTTCCTG | + |
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Preference number: 3 (lower is better) Translates to: FSRCFMWSAPTI*CDFKNIFAGFL Trigger: CAGGAAGCCAGCGAAAATGTTTTTAAAGTCACATCAGATCGTTGGAGCAGACCACATGAAGCATCGAGAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CCA 72 bp | CATCTTCTATGCAGTGAGAACTTGAAACAAATCCTTTaGTTTTCTTTGCCTAACATCCCGGGTGAGACCTCA | + |
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Preference number: 3 (lower is better) Translates to: HLLCSENLKQIL*FSLPNIPGETS Trigger: TGAGGTCTCACCCGGGATGTTAGGCAAAGAAAACCAAAGGATTTGTTTCAAGTTCTCACTGCATAGAAGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CCA 72 bp | AATTCCTTACTTCTGATTCTCAGGAAGGCCAAGGATTaGGTATCAAACTCTACAGTGAATATCGGGACAAAA | + |
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Preference number: 3 (lower is better) Translates to: NSLLLILRKAKD*VSNSTVNIGTK Trigger: TTTTGTCCCGATATTCACTGTAGAGTTTGATACCCAATCCTTGGCCTTCCTGAGAATCAGAAGTAAGGAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR TCA 90 bp | ACCTTCCCTCTGGGCATCCCGGGAGGACCTGGGCAGCCTTCATTTCACTGTACATGCACACAGGCTGGCTaGGCGCGTGGACACAATCTG | + |
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Preference number: 4 (lower is better) Translates to: TFPLGIPGGPGQPSFHCTCTQAG*ARGHNL Trigger: CAGATTGTGTCCACGCGCTCAGCCAGCCTGTGTGCA...TGTACAGTGAAATGAAGGCTGCCCAGGTCCTCCCGGGATGCCCAGAGGGAAGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR TCA 90 bp | ACCTTCCCTCTGGGCATCCCGGGAGGACCTGGGCAGCCTTCATTTCACTGTACATGTCTTGAGGCGCTCTaGGATGCGGCCACGGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: TFPLGIPGGPGQPSFHCTCLEAL*DAATEE Trigger: CTCTTCCGTGGCCGCATCTCAGAGCGCCTCAAGACA...TGTACAGTGAAATGAAGGCTGCCCAGGTCCTCCCGGGATGCCCAGAGGGAAGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR GCA 90 bp | GAGACCTCACTCAGGAAAGCTTCTGGACGGAGCAGCCAGGTGTTGTGGCTTCTTTGTCAAAGTCCCCTCTaGGCTGGATGGCCTTCCGGA | + |
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Preference number: 4 (lower is better) Translates to: ETSLRKASGRSSQVLWLLCQSPL*AGWPSG Trigger: TCCGGAAGGCCATCCAGCGCAGAGGGGACTTTGACA...AAGAAGCCACAACACCTGGCTGCTCCGTCCAGAAGCTTTCCTGAGTGAGGTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CAA 72 bp | TCACTCAGGAAAGCTTCTGGACGGAGCAGCCAGGTGTaGTGGCTTCTTTCCCTCAGCGAACCACCCTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: SLRKASGRSSQV*WLLSLSEPPCL Trigger: GAGACAGGGTGGTTCGCTGAGGGAAAGAAGCCACAACACCTGGCTGCTCCGTCCAGAAGCTTTCCTGAGTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR GCA 90 bp | TTCTGGACGGAGCAGCCAGGTGTTGTGGCTTCTTTCCCTCAGCGAACCACCCTGATCTTCTCAAACAGCTaGTTCCCAGGGTTCAGTGAG | + |
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Preference number: 4 (lower is better) Translates to: FWTEQPGVVASFPQRTTLIFSNS*FPGFSE Trigger: CTCACTGAACCCTGGGAAGCAGCTGTTTGAGAAGAT...CAGGGTGGTTCGCTGAGGGAAAGAAGCCACAACACCTGGCTGCTCCGTCCAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR GCA 90 bp | TCAAAACATGGCTGCCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTTTTGACCGCCACACAGTCCTCCTaGAGCGGGCTCAGACCCAGG | + |
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Preference number: 4 (lower is better) Translates to: SKHGCHDAELSLGLSLLTATQSS*SGLRPR Trigger: CCTGGGTCTGAGCCCGCTGCAGGAGGACTGTGTGGC...GGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCCATGTTTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR GCA 90 bp | TCCTCTATTCCAGGACAGCAAATGTTTAGAACCAGCAGGGTGATGCCTACAGGTACAGGGGCGGCCTCATaGGTCTCCTTGCTCAGACCC | + |
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Preference number: 4 (lower is better) Translates to: SSIPGQQMFRTSRVMPTGTGAAS*VSLLRP Trigger: GGGTCTGAGCAAGGAGACGCATGAGGCCGCCCCTGT...ACCTGTAGGCATCACCCTGCTGGTTCTAAACATTTGCTGTCCTGGAATAGAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CCA 90 bp | AGCCACAGACACTTGAAGGGGGTGTCGAGTCTAGCTTTGGTTTGGGTTCCTCTAGGCTGGCTGAGCGCGTaGACACAATCTGGCAGATTC | + |
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Preference number: 4 (lower is better) Translates to: SHRHLKGVSSLALVWVPLGWLSA*TQSGRF Trigger: GAATCTGCCAGATTGTGTCCACGCGCTCAGCCAGCC...TAGAGGAACCCAAACCAAAGCTAGACTCGACACCCCCTTCAAGTGTCTGTGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CCA 90 bp | GCTGGCAGTAGCCAGCCTAGTACTAGGAACACAGCACACTGTCTCATGCTCTGGTCCAGCAGCTGTTCATaGCTCAGCTTCAGAGACTCC | + |
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Preference number: 4 (lower is better) Translates to: AGSSQPSTRNTAHCLMLWSSSCS*LSFRDS Trigger: GGAGTCTCTGAAGCTGAGCCATGAACAGCTGCTGGA...CCAGAGCATGAGACAGTGTGCTGTGTTCCTAGTACTAGGCTGGCTACTGCCAGC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR TCA 90 bp | CCAGGAAGTGACCAGCAGGAACAACTTGTGAACAATTCCTTACTTCTGATTCTCCGCCCTTGTTCTCTTTaGTCCGCCACAGCACCGCGG | + |
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Preference number: 4 (lower is better) Translates to: PGSDQQEQLVNNSLLLILRPCSL*SATAPR Trigger: CCGCGGTGCTGTGGCGGATCAAAGAGAACAAGGGCG...GAGAATCAGAAGTAAGGAATTGTTCACAAGTTGTTCCTGCTGGTCACTTCCTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR GCA 90 bp | AGGTGGCTACCCCCTAGTGCTGCACACATCTATAGGTGGCTTCGGCTTTCAGTGAATCGATCAGGATGTTaGGCACAATCTCGCCCAAGT | + |
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Preference number: 4 (lower is better) Translates to: RWLPPSAAHIYRWLRLSVNRSGC*AQSRPS Trigger: ACTTGGGCGAGATTGTGCGCAACATCCTGATCGATT...CACTGAAAGCCGAAGCCACCTATAGATGTGTGCAGCACTAGGGGGTAGCCACCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CCA 90 bp | GGCTGCCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTTTTGACCCCCGTATCTCTCCTCACTGCCTTATaGAGACGCTTGGCAAAATGG | + |
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Preference number: 4 (lower is better) Translates to: GCHDAELSLGLSLLTPVSLLTAL*RRLAKW Trigger: CCATTTTGCCAAGCGTCTCCATAAGGCAGTGAGGAG...AGATACGGGGGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR TCA 90 bp | TCAAAACATGGCTGCCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTTTTGACCTCTGTTTGCCAGGGTTaGGAGAGAGCTCGTCCACAG | + |
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Preference number: 4 (lower is better) Translates to: SKHGCHDAELSLGLSLLTSVCQG*ERARPQ Trigger: CTGTGGACGAGCTCTCTCTCAACCCTGGCAAACAGA...GGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCCATGTTTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CCA 90 bp | AGACCGAGTGCCCAGGGATATGAGATGAGTCAAAGGTTCACTGAAGATCACACACTGTACCGTCTGGAGTaGCACACACATAAGTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: RPSAQGYEMSQRFTEDHTLYRLE*HTHKWA Trigger: TGCCCACTTATGTGTGTGCCACTCCAGACGGTACAG...TGTGTGATCTTCAGTGAACCTTTGACTCATCTCATATCCCTGGGCACTCGGTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CAA 72 bp | AGCCACAGACACTTGAAGGGGGTGTCGAGTCTAGCTTaGGTTTGGGTTCCTCTATTCCAGGACAGCAAATGT | + |
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Preference number: 4 (lower is better) Translates to: SHRHLKGVSSLA*VWVPLFQDSKC Trigger: ACATTTGCTGTCCTGGAATAGAGGAACCCAAACCAAAGCTAGACTCGACACCCCCTTCAAGTGTCTGTGGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR TCA 90 bp | TCAAAACATGGCTGCCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTTTTGACCTCTGTAGCTTGTCCATaGAGTTGGCCAGGCATTCGG | + |
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Preference number: 4 (lower is better) Translates to: SKHGCHDAELSLGLSLLTSVACP*SWPGIR Trigger: CCGAATGCCTGGCCAACTTCATGGACAAGCTACAGA...GGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCCATGTTTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR GCA 90 bp | TCTGCCAAGGAAATGCCAAGAGGTCCATCTCCTCATAATTTAAAACAGGGAAGTATCTGGCAGATTCGGTaGGTGGCCACACAGTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: SAKEMPRGPSPHNLKQGSIWQIR*VATQSS Trigger: GGAGGACTGTGTGGCCACGCACCGAATCTGCCAGAT...ACTTCCCTGTTTTAAATTATGAGGAGATGGACCTCTTGGCATTTCCTTGGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR GCA 90 bp | TCCTCTATTCCAGGACAGCAAATGTTTAGAACCAGCAGGGTGATGCCTACAGGTTCTTCTCCAGTGCCATaGATGACTTCCTGTGGGATG | + |
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Preference number: 4 (lower is better) Translates to: SSIPGQQMFRTSRVMPTGSSPVP*MTSCGM Trigger: CATCCCACAGGAAGTCATGCATGGCACTGGAGAAGA...ACCTGTAGGCATCACCCTGCTGGTTCTAAACATTTGCTGTCCTGGAATAGAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CCA 90 bp | CCAGGAAGTGACCAGCAGGAACAACTTGTGAACAATTCCTTACTTCTGATTCTCATGTGGTCAAACAGCTaGGTTCCACTGCCCCGCATG | + |
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Preference number: 4 (lower is better) Translates to: PGSDQQEQLVNNSLLLILMWSNS*VPLPRM Trigger: CATGCGGGGCAGTGGAACCCAGCTGTTTGACCACAT...GAGAATCAGAAGTAAGGAATTGTTCACAAGTTGTTCCTGCTGGTCACTTCCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CCA 90 bp | GGCTGCCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTTTTGACCCCCGTATCTCCTTATGGAGACGCTTaGCAAAATGGGGATGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: GCHDAELSLGLSLLTPVSPYGDA*QNGDVS Trigger: AGAAACATCCCCATTTTGCCAAGCGTCTCCATAAGG...AGATACGGGGGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CAA 72 bp | GGGAGAAGTGAACTTTTGAATTCAGAGCGAACCGTGTaGGTAGAGCAGAGAACAGGACATTGGTGTCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: GRSELLNSERTV*VEQRTGHWCLP Trigger: GGGAAGACACCAATGTCCTGTTCTCTGCTCTACCAACACGGTTCGCTCTGAATTCAAAAGTTCACTTCTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CCA 90 bp | TCAAAACATGGCTGCCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTTTTGACCTGGCACACACATAAGTaGGCAACATCTTCACAGGGG | + |
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Preference number: 4 (lower is better) Translates to: SKHGCHDAELSLGLSLLTWHTHK*ATSSQG Trigger: CCCCTGTGAAGATGTTGCCCACTTATGTGTGTGCCA...GGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCCATGTTTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR GCA 90 bp | AATGAGGTATTTCTAGAGCCAGTCAGTGTCTCCACCTCATATCCTGAACTACAACAGCATCTTCACAGCTaGTGTAGGGTGTGTGGTAGC | + |
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Preference number: 4 (lower is better) Translates to: NEVFLEPVSVSTSYPELQQHLHS*CRVCGS Trigger: GCTACCACACACCCTACAGCAGCTGTGAAGATGCTG...TTGTAGTTCAGGATATGAGGTGGAGACACTGACTGGCTCTAGAAATACCTCATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CAA 72 bp | CAGACACTTGAAGGGGGTGTCGAGTCTAGCTTTGGTTaGGGTTCCTCTATTCCAGGACAGCAAATGTTTAGA | + |
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Preference number: 4 (lower is better) Translates to: QTLEGGVESSFG*GSSIPGQQMFR Trigger: TCTAAACATTTGCTGTCCTGGAATAGAGGAACCCAAACCAAAGCTAGACTCGACACCCCCTTCAAGTGTCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR GCA 90 bp | TCAAAACATGGCTGCCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTTTTGACCTACTGGTCAACCTTCTaGACTTGGTTTTGGTTGAGC | + |
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Preference number: 4 (lower is better) Translates to: SKHGCHDAELSLGLSLLTYWSTF*TWFWLS Trigger: GCTCAACCAAAACCAAGTGCAGAAGGTTGACCAGTA...GGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCCATGTTTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CCA 90 bp | AATGAGGTATTTCTAGAGCCAGTCAGTGTCTCCACCTCATATCCTGAACTACAAAGTGGTAAGGAGCTCTaGGCTGAGTTTCCCTTGGAA | + |
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Preference number: 4 (lower is better) Translates to: NEVFLEPVSVSTSYPELQSGKEL*AEFPLE Trigger: TTCCAAGGGAAACTCAGCCCAGAGCTCCTTACCACT...TTGTAGTTCAGGATATGAGGTGGAGACACTGACTGGCTCTAGAAATACCTCATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CAA 72 bp | TGCCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTTTaGACCCCCGTATCTTGTTTATTAGTGTTACAAGGC | + |
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Preference number: 4 (lower is better) Translates to: CHDAELSLGLSL*TPVSCLLVLQG Trigger: GCCTTGTAACACTAATAAACAAGATACGGGGGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CCA 90 bp | TCTGCCAAGGAAATGCCAAGAGGTCCATCTCCTCATAATTTAAAACAGGGAAGTTTTCTCTGTACCGTCTaGAGTGGCACACACATAAGT | + |
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Preference number: 4 (lower is better) Translates to: SAKEMPRGPSPHNLKQGSFLCTV*SGTHIS Trigger: ACTTATGTGTGTGCCACTCCAGACGGTACAGAGAAA...ACTTCCCTGTTTTAAATTATGAGGAGATGGACCTCTTGGCATTTCCTTGGCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CCA 90 bp | AAGGCTGTTTCCTCTTTATTAAACCTATCCAGGTTTAACATTGGTGGTCAATTTTTGAGGAGGATGCTCTaGTCCAGGCTGTTCTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: KAVSSLLNLSRFNIGGQFLRRML*SRLFCW Trigger: CCAGCAGAACAGCCTGGACCAGAGCATCCTCCTCAA...AAATTGACCACCAATGTTAAACCTGGATAGGTTTAATAAAGAGGAAACAGCCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR GCA 90 bp | AAGGCTGTTTCCTCTTTATTAAACCTATCCAGGTTTAACATTGGTGGTCAATTTCCTCATGCGTCTCCTTaGTCAGACCCTGCTCCATTT | + |
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Preference number: 4 (lower is better) Translates to: KAVSSLLNLSRFNIGGQFPHASP*SDPAPF Trigger: AAATGGAGCAGGGTCTGAGCAAGGAGACGCATGAGG...AAATTGACCACCAATGTTAAACCTGGATAGGTTTAATAAAGAGGAAACAGCCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CAA 72 bp | CAATTCCTTACTTCTGATTCTCAGGAAGGCCAAGGATaGGGTATCAAACTCTACAGTGAATATCGGGACAAA | + |
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Preference number: 4 (lower is better) Translates to: QFLTSDSQEGQG*GIKLYSEYRDK Trigger: TTTGTCCCGATATTCACTGTAGAGTTTGATACCCAATCCTTGGCCTTCCTGAGAATCAGAAGTAAGGAATTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CAA 72 bp | GTGACTTTAAAAACATTTTCGCTGGCTTCCTGTAACTaGTCAAACCATTCTGAAACGCCGACTGACCTAAAA | + |
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Preference number: 4 (lower is better) Translates to: VTLKTFSLASCN*SNHSETPTDLK Trigger: TTTTAGGTCAGTCGGCGTTTCAGAATGGTTTGACAAGTTACAGGAAGCCAGCGAAAATGTTTTTAAAGTCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| 3UTR CAA 72 bp | GCTTTCTCTTGGTCTTTCTCTTTTGACCCCCGTATCTaGTTTATTAGTGTTACAAGGCTGTTTCCTCTTTAT | + |
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Preference number: 4 (lower is better) Translates to: AFSWSFSFDPRI*FISVTRLFPLY Trigger: ATAAAGAGGAAACAGCCTTGTAACACTAATAAACAAGATACGGGGGTCAAAAGAGAAAGACCAAGAGAAAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CAA 90 bp | GGCTGCCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTTTTGACCCCCGTATCTTCATCCAGGCAGCCGTaGTCCCCGAACGCTCCCCAC | + |
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Preference number: 5 (lower is better) Translates to: GCHDAELSLGLSLLTPVSSSRQP*SPNAPH Trigger: GTGGGGAGCGTTCGGGGACAACGGCTGCCTGGATGA...AGATACGGGGGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CAA 90 bp | CTTCCTCCTCCTCCTCCCTCCCTCCCAATGCCTGATCTGATGACAGAAGTATCAAGCTTGTCCATGAAGTaGGCCAGGCATTCGGCAATG | + |
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Preference number: 5 (lower is better) Translates to: LPPPPPSLPMPDLMTEVSSLSMK*ARHSAM Trigger: CATTGCCGAATGCCTGGCCAACTTCATGGACAAGCT...TGATACTTCTGTCATCAGATCAGGCATTGGGAGGGAGGGAGGAGGAGGAGGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CAA 90 bp | AGCCACAGACACTTGAAGGGGGTGTCGAGTCTAGCTTTGGTTTGGGTTCCTCTACTCTGTTTGCCAGGGTaGAGAGAGAGCTCGTCCACA | + |
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Preference number: 5 (lower is better) Translates to: SHRHLKGVSSLALVWVPLLCLPG*RESSST Trigger: TGTGGACGAGCTCTCTCTCAACCCTGGCAAACAGAG...TAGAGGAACCCAAACCAAAGCTAGACTCGACACCCCCTTCAAGTGTCTGTGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CAA 90 bp | AGTAGCCAGCCTAGTACTAGGAACACAGCACACTGTCTCATGCTCTGGATTGAAAGTCGCTCCTCGCCCTaGTTCTCTTTGATCCGCCAC | + |
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Preference number: 5 (lower is better) Translates to: SSQPSTRNTAHCLMLWIESRSSP*FSLIRH Trigger: GTGGCGGATCAAAGAGAACAAGGGCGAGGAGCGACT...TTCAATCCAGAGCATGAGACAGTGTGCTGTGTTCCTAGTACTAGGCTGGCTACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CAA 90 bp | TCAAAACATGGCTGCCACGATGCTGAGCTTTCTCTTGGTCTTTCTCTTTTGACCTGGGCTGAGTTTCCCTaGGAACAGCAGCTCGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: SKHGCHDAELSLGLSLLTWAEFP*EQQLGL Trigger: AAGGCCGAGCTGCTGTTCCAAGGGAAACTCAGCCCA...GGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCCATGTTTTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CAA 90 bp | AGACCGAGTGCCCAGGGATATGAGATGAGTCAAAGGTTCACTGAAGATCACACAAAATCGATCAGGATGTaGCGCACAATCTCGCCCAAG | + |
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Preference number: 5 (lower is better) Translates to: RPSAQGYEMSQRFTEDHTKSIRM*RTISPK Trigger: CTTGGGCGAGATTGTGCGCAACATCCTGATCGATTT...TGTGTGATCTTCAGTGAACCTTTGACTCATCTCATATCCCTGGGCACTCGGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CAA 90 bp | CCAGGAAGTGACCAGCAGGAACAACTTGTGAACAATTCCTTACTTCTGATTCTCTGCACTTGGTTTTGGTaGAGCTCCGTGAATAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: PGSDQQEQLVNNSLLLILCTWFW*SSVNKQ Trigger: CTGCTTATTCACGGAGCTCAACCAAAACCAAGTGCA...GAGAATCAGAAGTAAGGAATTGTTCACAAGTTGTTCCTGCTGGTCACTTCCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS-3UTR CAA 90 bp | AAGGCTGTTTCCTCTTTATTAAACCTATCCAGGTTTAACATTGGTGGTCAATTTTCGCAGCCGGATGCCTaGAATCCCTTTGTCCACTTG | + |
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Preference number: 5 (lower is better) Translates to: KAVSSLLNLSRFNIGGQFSQPDA*NPFVHL Trigger: CAAGTGGACAAAGGGATTCAAGGCATCCGGCTGCGA...AAATTGACCACCAATGTTAAACCTGGATAGGTTTAATAAAGAGGAAACAGCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000642.11 |
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| CDS CAA 72 bp | TCCACGCCGATGGTGGAGCGGAGTCGCTCCTCGCCCTaGTTCTCTTTGATCCGCCACAGCACCGCGGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: STPMVERSRSSP*FSLIRHSTAAR Trigger: CCTGGCCGCGGTGCTGTGGCGGATCAAAGAGAACAAGGGCGAGGAGCGACTCCGCTCCACCATCGGCGTGGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000642.11 ENSMUST00000170833.2 |
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| CDS TCA 72 bp | CAATGTGGTCAAACAGCTGGGTTCCACTGCCCCGCATaGTGTCCTCGGGAATGGCGTAGATCTGGTTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: QCGQTAGFHCPA*CPREWRRSGSP Trigger: TGGAGAACCAGATCTACGCCATTCCCGAGGACATCATGCGGGGCAGTGGAACCCAGCTGTTTGACCACATTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000642.11 ENSMUST00000170833.2 |
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| CDS CCA 72 bp | CTTTCTCTGTACCGTCTGGAGTGGCACACACATAAGTaGGCAACATCTTCACAGGGGCGGCCTCATGCGTCT | + |
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Preference number: 6 (lower is better) Translates to: LSLYRLEWHTHK*ATSSQGRPHAS Trigger: AGACGCATGAGGCCGCCCCTGTGAAGATGTTGCCCACTTATGTGTGTGCCACTCCAGACGGTACAGAGAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000642.11 ENSMUST00000170833.2 |
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| CDS TCA 72 bp | GCTTGTACAGTGTCCCGTCCACGCCCACCGTCACTTTaGGGTTGTCCAGTCCACGGTTCTCTCTTATCTTGT | + |
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Preference number: 6 (lower is better) Translates to: ACTVSRPRPPSL*GCPVHGSLLSC Trigger: ACAAGATAAGAGAGAACCGTGGACTGGACAACCTCAAAGTGACGGTGGGCGTGGACGGGACACTGTACAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000642.11 ENSMUST00000170833.2 |
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| CDS CAA 72 bp | CCGCTGATCATCTTCTCAAACCTCTGTTTGCCAGGGTaGAGAGAGAGCTCGTCCACAGCGACGTCAAACACT | + |
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Preference number: 6 (lower is better) Translates to: PLIIFSNLCLPG*RESSSTATSNT Trigger: AGTGTTTGACGTCGCTGTGGACGAGCTCTCTCTCAACCCTGGCAAACAGAGGTTTGAGAAGATGATCAGCGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000642.11 ENSMUST00000170833.2 |
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| CDS CAA 72 bp | ATTCCGTCCTTATCGTCTTCAATATCCGAGACATCTTaGGTCTCGAAGGAGCCAGTGGTAAGGAGCTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: IPSLSSSISETS*VSKEPVVRSSG Trigger: CCCAGAGCTCCTTACCACTGGCTCCTTCGAGACCAAAGATGTCTCGGATATTGAAGACGATAAGGACGGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000642.11 ENSMUST00000170833.2 |
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