Pregenerated sensors for HJV (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038403Ensembl transcript IDs: ENSMUST00000049208.11
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTAACTGGGAAATCCATGGTGAATAGCCCACACCAAGGTCTGGAGTaGAAAACCCTGGCCCAGAATCTTTATTCTAGGGTCATTTCAGCC | + |
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Preference number: 1 (lower is better) Translates to: LTGKSMVNSPHQGLE*KTLAQNLYSRVISA Trigger: GGCTGAAATGACCCTAGAATAAAGATTCTGGGCCAGGGTTTTGCACTCCAGACCTTGGTGTGGGCTATTCACCATGGATTTCCCAGTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| 3UTR TCA 90 bp | TTTATTCTAGGGTCATTTCAGCCCTGGACTGCAACCTCATCTGATTaGGTAAGTGTTGTCTCCTGTCCCCGCTGTTTCCTTTGGCACATC | + |
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Preference number: 1 (lower is better) Translates to: FILGSFQPWTATSSD*VSVVSCPRCFLWHI Trigger: GATGTGCCAAAGGAAACAGCGGGGACAGGAGACAACACTTACTCAATCAGATGAGGTTGCAGTCCAGGGCTGAAATGACCCTAGAATAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| 3UTR TCA 90 bp | AATCTTTATTCTAGGGTCATTTCAGCCCTGGACTGCAACCTCATCTaGTTGAGTAAGTGTTGTCTCCTGTCCCCGCTGTTTCCTTTGGCA | + |
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Preference number: 1 (lower is better) Translates to: NLYSRVISALDCNLI*LSKCCLLSPLFPLA Trigger: TGCCAAAGGAAACAGCGGGGACAGGAGACAACACTTACTCAATCAGATGAGGTTGCAGTCCAGGGCTGAAATGACCCTAGAATAAAGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| 3UTR CCA 90 bp | AGCACTCTCACAATCTCTAGGCTTGTAGGAGTGGTATCAGGTGTATaGAGAGTGGAATTTCATTACAAGTGGGAAATCACTAACTGGGAA | + |
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Preference number: 1 (lower is better) Translates to: STLTISRLVGVVSGV*RVEFHYKWEITNWE Trigger: TTCCCAGTTAGTGATTTCCCACTTGTAATGAAATTCCACTCTCCATACACCTGATACCACTCCTACAAGCCTAGAGATTGTGAGAGTGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| 3UTR-3UTR TCA 90 bp | AAGGGATGGAAATGCCCGTTTCTGAGTTGGTGCCAGTCTCCAAAAGCTGACTTCGACTGCAACCTCATCTaGTTGAGTAAGTGTTGTCTC | + |
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Preference number: 2 (lower is better) Translates to: KGWKCPFLSWCQSPKADFDCNLI*LSKCCL Trigger: GAGACAACACTTACTCAATCAGATGAGGTTGCAGTC...GAAGTCAGCTTTTGGAGACTGGCACCAACTCAGAAACGGGCATTTCCATCCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| 3UTR-3UTR GCA 90 bp | CAGTCCTTTAATGTTTCACTGGTCATTAGCACTCTCACAATCTCTAGGCTTGTACACCAAGGTCTGGAGTaGAAAACCCTGGCCCAGAAT | + |
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Preference number: 2 (lower is better) Translates to: QSFNVSLVISTLTISRLVHQGLE*KTLAQN Trigger: ATTCTGGGCCAGGGTTTTGCACTCCAGACCTTGGTG...TACAAGCCTAGAGATTGTGAGAGTGCTAATGACCAGTGAAACATTAAAGGACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| 3UTR-3UTR CCA 90 bp | ACAATGCCCACTTCGTTTCTGAACCAAAAGCTTTTCCTAATTAGCTTCTCCTCTGTGGTATCAGGTGTATaGAGAGTGGAATTTCATTAC | + |
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Preference number: 2 (lower is better) Translates to: TMPTSFLNQKLFLISFSSVVSGV*RVEFHY Trigger: GTAATGAAATTCCACTCTCCATACACCTGATACCAC...AGAGGAGAAGCTAATTAGGAAAAGCTTTTGGTTCAGAAACGAAGTGGGCATTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| 3UTR TCA 72 bp | GGGTCATTTCAGCCCTGGACTGCAACCTCATCTGATTaGGTAAGTGTTGTCTCCTGTCCCCGCTGTTTCCTT | + |
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Preference number: 3 (lower is better) Translates to: GSFQPWTATSSD*VSVVSCPRCFL Trigger: AAGGAAACAGCGGGGACAGGAGACAACACTTACTCAATCAGATGAGGTTGCAGTCCAGGGCTGAAATGACCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| 3UTR TCA 72 bp | ATGCCCGTTTCTGAGTTGGTGCCAGTCTCCAAAAGCTaGCTTCCTCTGCCAGACAATGCCCACTTCGTTTCT | + |
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Preference number: 3 (lower is better) Translates to: MPVSELVPVSKS*LPLPDNAHFVS Trigger: AGAAACGAAGTGGGCATTGTCTGGCAGAGGAAGTCAGCTTTTGGAGACTGGCACCAACTCAGAAACGGGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| 3UTR-3UTR CAA 90 bp | AAGGGATGGAAATGCCCGTTTCTGAGTTGGTGCCAGTCTCCAAAAGCTGACTTCTCCTTTGGCACATCTTaGTGGTTTCTCACACCAACC | + |
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Preference number: 3 (lower is better) Translates to: KGWKCPFLSWCQSPKADFSFGTS*WFLTPT Trigger: GGTTGGTGTGAGAAACCACAAAGATGTGCCAAAGGA...GAAGTCAGCTTTTGGAGACTGGCACCAACTCAGAAACGGGCATTTCCATCCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| 3UTR GCA 72 bp | AAATCCATGGTGAATAGCCCACACCAAGGTCTGGAGTaGAAAACCCTGGCCCAGAATCTTTATTCTAGGGTC | + |
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Preference number: 3 (lower is better) Translates to: KSMVNSPHQGLE*KTLAQNLYSRV Trigger: GACCCTAGAATAAAGATTCTGGGCCAGGGTTTTGCACTCCAGACCTTGGTGTGGGCTATTCACCATGGATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| 3UTR-3UTR CAA 90 bp | CTTCCTCTGCCAGACAATGCCCACTTCGTTTCTGAACCAAAAGCTTTTCCTAATTCCCCGCTGTTTCCTTaGGCACATCTTTGTGGTTTC | + |
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Preference number: 3 (lower is better) Translates to: LPLPDNAHFVSEPKAFPNSPLFP*AHLCGF Trigger: GAAACCACAAAGATGTGCCAAAGGAAACAGCGGGGA...ATTAGGAAAAGCTTTTGGTTCAGAAACGAAGTGGGCATTGTCTGGCAGAGGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CCA 90 bp | GTTTCTCACACCAACCTCTATCCTCAAATCGTTTCCAAACCAGTCATGGGTTGCGTTGGAGGGCTGCCGTaGGGGGACCGGGGACTAGGG | + |
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Preference number: 4 (lower is better) Translates to: VSHTNLYPQIVSKPVMGCVGGLP*GDRGLG Trigger: CCCTAGTCCCCGGTCCCCCCACGGCAGCCCTCCAAC...GCAACCCATGACTGGTTTGGAAACGATTTGAGGATAGAGGTTGGTGTGAGAAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CCA 90 bp | TCTCACACCAACCTCTATCCTCAAATCGTTTCCAAACCAGTCATGGGTTGCTGGGGGGCCGTGGGACCCTaGCGTGAGCAGTTGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SHTNLYPQIVSKPVMGCWGAVGP*REQLCW Trigger: CCAGCACAACTGCTCACGCCAGGGTCCCACGGCCCC...CCAGCAACCCATGACTGGTTTGGAAACGATTTGAGGATAGAGGTTGGTGTGAGA 57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CCA 90 bp | AAGGGATGGAAATGCCCGTTTCTGAGTTGGTGCCAGTCTCCAAAAGCTGACTTCGAGCGAGAGAGTCGCTaGCTCGGAGGGCATCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: KGWKCPFLSWCQSPKADFERESR*LGGHPP Trigger: TGGGGGATGCCCTCCGAGCCAGCGACTCTCTCGCTC...GAAGTCAGCTTTTGGAGACTGGCACCAACTCAGAAACGGGCATTTCCATCCCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR TCA 90 bp | TCTCACACCAACCTCTATCCTCAAATCGTTTCCAAACCAGTCATGGGTTGCTGGACGGCGGTTGCGCTCTaGGCGAGAGAGTCGCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: SHTNLYPQIVSKPVMGCWTAVAL*ARESLA Trigger: AGCCAGCGACTCTCTCGCTCAGAGCGCAACCGCCGT...CCAGCAACCCATGACTGGTTTGGAAACGATTTGAGGATAGAGGTTGGTGTGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR TCA 90 bp | GCAAAACCCTGGCCCAGAATCTTTATTCTAGGGTCATTTCAGCCCTGGACTGCACGTGGGACCCTGGCGTaGGCAGTTGTGCTGGATCAT | + |
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Preference number: 4 (lower is better) Translates to: AKPWPRIFILGSFQPWTARGTLA*AVVLDH Trigger: ATGATCCAGCACAACTGCTCACGCCAGGGTCCCACG...TGCAGTCCAGGGCTGAAATGACCCTAGAATAAAGATTCTGGGCCAGGGTTTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR TCA 90 bp | TCCTTTAATGTTTCACTGGTCATTAGCACTCTCACAATCTCTAGGCTTGTAGGAGCGACACAAGCCACCTaGGGCCAGCCCACCACGGCC | + |
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Preference number: 4 (lower is better) Translates to: SFNVSLVISTLTISRLVGATQAT*GQPTTA Trigger: GGCCGTGGTGGGCTGGCCTCAGGTGGCTTGTGTCGC...TCCTACAAGCCTAGAGATTGTGAGAGTGCTAATGACCAGTGAAACATTAAAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR GCA 90 bp | GCAAAACCCTGGCCCAGAATCTTTATTCTAGGGTCATTTCAGCCCTGGACTGCACCGCGCCACATCCTCTaGTACCCTGATGGAGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: AKPWPRIFILGSFQPWTAPRHIL*YPDGEG Trigger: TCCTTCTCCATCAGGGTAGCAGAGGATGTGGCGCGG...TGCAGTCCAGGGCTGAAATGACCCTAGAATAAAGATTCTGGGCCAGGGTTTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CCA 90 bp | CTTCCTCTGCCAGACAATGCCCACTTCGTTTCTGAACCAAAAGCTTTTCCTAATGCGGGACTAGGCAGATaGCAGGAGAGAGGGGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: LPLPDNAHFVSEPKAFPNAGLGR*QERGEA Trigger: GGCCTCCCCTCTCTCCTGCCATCTGCCTAGTCCCGC...ATTAGGAAAAGCTTTTGGTTCAGAAACGAAGTGGGCATTGTCTGGCAGAGGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CCA 90 bp | GCAAAACCCTGGCCCAGAATCTTTATTCTAGGGTCATTTCAGCCCTGGACTGCAGGGGAGCTGGTGGCCTaGACAAAGAGGAAGTCGTTA | + |
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Preference number: 4 (lower is better) Translates to: AKPWPRIFILGSFQPWTAGELVA*TKRKSL Trigger: TAACGACTTCCTCTTTGTCCAGGCCACCAGCTCCCC...TGCAGTCCAGGGCTGAAATGACCCTAGAATAAAGATTCTGGGCCAGGGTTTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR TCA 90 bp | GTTTCTCACACCAACCTCTATCCTCAAATCGTTTCCAAACCAGTCATGGGTTGCCATCCTCTGCTACCCTaGTGGAGAAGGAGAGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: VSHTNLYPQIVSKPVMGCHPLLP*WRRRAA Trigger: GGCAGCTCTCCTTCTCCATCAGGGTAGCAGAGGATG...GCAACCCATGACTGGTTTGGAAACGATTTGAGGATAGAGGTTGGTGTGAGAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR GCA 90 bp | GCAAAACCCTGGCCCAGAATCTTTATTCTAGGGTCATTTCAGCCCTGGACTGCATGGCGTGAGCAGTTGTaGTGGATCATCAGGTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: AKPWPRIFILGSFQPWTAWREQL*WIIRSS Trigger: AGAGGACCTGATGATCCAGCACAACTGCTCACGCCA...TGCAGTCCAGGGCTGAAATGACCCTAGAATAAAGATTCTGGGCCAGGGTTTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR GCA 90 bp | AAGGGATGGAAATGCCCGTTTCTGAGTTGGTGCCAGTCTCCAAAAGCTGACTTCCAGAGCTGTCTGAGCTaGCACAGTAAAGTTGGGGTC | + |
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Preference number: 4 (lower is better) Translates to: KGWKCPFLSWCQSPKADFQSCLS*HSKVGV Trigger: GACCCCAACTTTACTGTGGCAGCTCAGACAGCTCTG...GAAGTCAGCTTTTGGAGACTGGCACCAACTCAGAAACGGGCATTTCCATCCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR TCA 90 bp | TCTCACACCAACCTCTATCCTCAAATCGTTTCCAAACCAGTCATGGGTTGCTGGGCTCGAATCTCCACGTaGCTCCCAAGGTTAGCAGTT | + |
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Preference number: 4 (lower is better) Translates to: SHTNLYPQIVSKPVMGCWARIST*LPRLAV Trigger: AACTGCTAACCTTGGGAGTCACGTGGAGATTCGAGC...CCAGCAACCCATGACTGGTTTGGAAACGATTTGAGGATAGAGGTTGGTGTGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR GCA 90 bp | AAGGGATGGAAATGCCCGTTTCTGAGTTGGTGCCAGTCTCCAAAAGCTGACTTCAGACATACTCGGCATTaGAGCGGAGGATCTTGCACT | + |
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Preference number: 4 (lower is better) Translates to: KGWKCPFLSWCQSPKADFRHTRH*SGGSCT Trigger: AGTGCAAGATCCTCCGCTGCAATGCCGAGTATGTCT...GAAGTCAGCTTTTGGAGACTGGCACCAACTCAGAAACGGGCATTTCCATCCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CCA 90 bp | GCCTTTACGATATCTCAGTCCTTTAATGTTTCACTGGTCATTAGCACTCTCACACCATGCACCGCAGAGTaGAAAGCAAGGTCCCCGCGG | + |
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Preference number: 4 (lower is better) Translates to: AFTISQSFNVSLVISTLTPCTAE*KARSPR Trigger: CCGCGGGGACCTTGCTTTCCACTCTGCGGTGCATGG...TGTGAGAGTGCTAATGACCAGTGAAACATTAAAGGACTGAGATATCGTAAAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CCA 90 bp | CTTCCTCTGCCAGACAATGCCCACTTCGTTTCTGAACCAAAAGCTTTTCCTAATACGAAACCGGGGAGCTaGTGGCCTGGACAAAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: LPLPDNAHFVSEPKAFPNTKPGS*WPGQRG Trigger: TCCTCTTTGTCCAGGCCACCAGCTCCCCGGTTTCGT...ATTAGGAAAAGCTTTTGGTTCAGAAACGAAGTGGGCATTGTCTGGCAGAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR TCA 90 bp | TTTGGCACATCTTTGTGGTTTCTCACACCAACCTCTATCCTCAAATCGTTTCCAATCTTGCACTGGGAGTaGGCCTGTCCACAGAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: FGTSLWFLTPTSILKSFPILHWE*ACPQRS Trigger: GCTCCTCTGTGGACAGGCTCACTCCCAGTGCAAGAT...TGGAAACGATTTGAGGATAGAGGTTGGTGTGAGAAACCACAAAGATGTGCCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR GCA 90 bp | GCAAAACCCTGGCCCAGAATCTTTATTCTAGGGTCATTTCAGCCCTGGACTGCAACCATCTTCAAAGGCTaGAGGAAGATTGTCCACCTC | + |
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Preference number: 4 (lower is better) Translates to: AKPWPRIFILGSFQPWTATIFKG*RKIVHL Trigger: GAGGTGGACAATCTTCCTGCAGCCTTTGAAGATGGT...TGCAGTCCAGGGCTGAAATGACCCTAGAATAAAGATTCTGGGCCAGGGTTTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR TCA 90 bp | GTCATTAGCACTCTCACAATCTCTAGGCTTGTAGGAGTGGTATCAGGTGTATGGCCAAGGTTAGCAGTTTaGATGGACAAACTCGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: VISTLTISRLVGVVSGVWPRLAV*MDKLEP Trigger: GGGCTCGAGTTTGTCCATTCAAACTGCTAACCTTGG...CCATACACCTGATACCACTCCTACAAGCCTAGAGATTGTGAGAGTGCTAATGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR GCA 90 bp | CTTCCTCTGCCAGACAATGCCCACTTCGTTTCTGAACCAAAAGCTTTTCCTAATTCATCAGGTCCTCTATaGCATGCACCGCAGAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: LPLPDNAHFVSEPKAFPNSSGPL*HAPQSG Trigger: TCCACTCTGCGGTGCATGGCATAGAGGACCTGATGA...ATTAGGAAAAGCTTTTGGTTCAGAAACGAAGTGGGCATTGTCTGGCAGAGGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR GCA 90 bp | TTTGGCACATCTTTGTGGTTTCTCACACCAACCTCTATCCTCAAATCGTTTCCAGGGATCTCCAAAGGATaGGCAATGCAAGAAGCCCGG | + |
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Preference number: 4 (lower is better) Translates to: FGTSLWFLTPTSILKSFPGISKG*AMQEAR Trigger: CCGGGCTTCTTGCATTGCGCATCCTTTGGAGATCCC...TGGAAACGATTTGAGGATAGAGGTTGGTGTGAGAAACCACAAAGATGTGCCAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR TCA 90 bp | ACAATGCCCACTTCGTTTCTGAACCAAAAGCTTTTCCTAATTAGCTTCTCCTCTGGGGTCACCGGAGACTaGAACATCAAAGACGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: TMPTSFLNQKLFLISFSSGVTGD*NIKDAG Trigger: TCCTGCGTCTTTGATGTTTCAGTCTCCGGTGACCCC...AGAGGAGAAGCTAATTAGGAAAAGCTTTTGGTTCAGAAACGAAGTGGGCATTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR GCA 90 bp | TGCCAGACAATGCCCACTTCGTTTCTGAACCAAAAGCTTTTCCTAATTAGCTTCAGGTCCTCTATGCCATaGACCGCAGAGTGGAAAGCA | + |
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Preference number: 4 (lower is better) Translates to: CQTMPTSFLNQKLFLISFRSSMP*TAEWKA Trigger: TGCTTTCCACTCTGCGGTGCATGGCATAGAGGACCT...GAAGCTAATTAGGAAAAGCTTTTGGTTCAGAAACGAAGTGGGCATTGTCTGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CCA 90 bp | CATCTTTGTGGTTTCTCACACCAACCTCTATCCTCAAATCGTTTCCAAACCAGTCCCGAAGACTCAGAGTaGACGAGACATACTCGGCAT | + |
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Preference number: 4 (lower is better) Translates to: HLCGFSHQPLSSNRFQTSPEDSE*TRHTRH Trigger: ATGCCGAGTATGTCTCGTCCACTCTGAGTCTTCGGG...ACTGGTTTGGAAACGATTTGAGGATAGAGGTTGGTGTGAGAAACCACAAAGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| 3UTR CAA 72 bp | TTGAGTAAGTGTTGTCTCCTGTCCCCGCTGTTTCCTTaGGCACATCTTTGTGGTTTCTCACACCAACCTCTA | + |
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Preference number: 4 (lower is better) Translates to: LSKCCLLSPLFP*AHLCGFSHQPL Trigger: TAGAGGTTGGTGTGAGAAACCACAAAGATGTGCCAAAGGAAACAGCGGGGACAGGAGACAACACTTACTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CCA 90 bp | TCCTTTAATGTTTCACTGGTCATTAGCACTCTCACAATCTCTAGGCTTGTAGGATGGAAACTGCGCACATaGGGATCTCCAAAGGATGCG | + |
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Preference number: 4 (lower is better) Translates to: SFNVSLVISTLTISRLVGWKLRT*GSPKDA Trigger: CGCATCCTTTGGAGATCCCCATGTGCGCAGTTTCCA...TCCTACAAGCCTAGAGATTGTGAGAGTGCTAATGACCAGTGAAACATTAAAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR TCA 90 bp | GCCTTTACGATATCTCAGTCCTTTAATGTTTCACTGGTCATTAGCACTCTCACATGGACACGGCATGTGTaGAATTGGTTGTGGAAACTG | + |
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Preference number: 4 (lower is better) Translates to: AFTISQSFNVSLVISTLTWTRHV*NWLWKL Trigger: CAGTTTCCACAACCAATTTCACACATGCCGTGTCCA...TGTGAGAGTGCTAATGACCAGTGAAACATTAAAGGACTGAGATATCGTAAAGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS GCA 90 bp | AGTCGCTGGCTCGGAGGGCATCCCCCAACACACAGCTGTAGGTCCTaGTCTGCGGAGAAGGCCCGCGCCACATCCTCTGCTACCCTGATG | + |
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Preference number: 5 (lower is better) Translates to: SRWLGGHPPTHSCRS*SAEKARATSSATLM Trigger: CATCAGGGTAGCAGAGGATGTGGCGCGGGCCTTCTCCGCAGAGCAGGACCTACAGCTGTGTGTTGGGGGATGCCCTCCGAGCCAGCGACT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CCA 90 bp | CTCCACGCGGCGTGTCCGGTGAGCCACCTCCCCGAAGACTCAGAGTaGACGAGACATACTCGGCATTGCAGCGGAGGATCTTGCACTGGG | + |
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Preference number: 5 (lower is better) Translates to: LHAACPVSHLPEDSE*TRHTRHCSGGSCTG Trigger: CCCAGTGCAAGATCCTCCGCTGCAATGCCGAGTATGTCTCGTCCACTCTGAGTCTTCGGGGAGGTGGCTCACCGGACACGCCGCGTGGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS TCA 90 bp | CCTTCTGGCAGTATCTATGGCTATAGCCCCACGGCGGTTGCGCTCTaGGCGAGAGAGTCGCTGGCTCGGAGGGCATCCCCCAACACACAG | + |
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Preference number: 5 (lower is better) Translates to: PSGSIYGYSPTAVAL*ARESLARRASPNTQ Trigger: CTGTGTGTTGGGGGATGCCCTCCGAGCCAGCGACTCTCTCGCTCAGAGCGCAACCGCCGTGGGGCTATAGCCATAGATACTGCCAGAAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS GCA 90 bp | AGCCACCTCCCCGAAGACTCAGAGTGGACGAGACATACTCGGCATTaGAGCGGAGGATCTTGCACTGGGAGTGAGCCTGTCCACAGAGGA | + |
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Preference number: 5 (lower is better) Translates to: SHLPEDSEWTRHTRH*SGGSCTGSEPVHRG Trigger: TCCTCTGTGGACAGGCTCACTCCCAGTGCAAGATCCTCCGCTGCAATGCCGAGTATGTCTCGTCCACTCTGAGTCTTCGGGGAGGTGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CCA 90 bp | ATGGTGGTAGCGTTGGCTCCCGACGAAACCGGGGAGCTGGTGGCCTaGACAAAGAGGAAGTCGTTATCTAGCAAGGGCCAAGCTCCTTGG | + |
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Preference number: 5 (lower is better) Translates to: MVVALAPDETGELVA*TKRKSLSSKGQAPW Trigger: CCAAGGAGCTTGGCCCTTGCTAGATAACGACTTCCTCTTTGTCCAGGCCACCAGCTCCCCGGTTTCGTCGGGAGCCAACGCTACCACCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS GCA 90 bp | GTGAAATTGGTTGTGGAAACTGCGCACATGGGGATCTCCAAAGGATaGGCAATGCAAGAAGCCCGGGGCTCGACCGTGCAGCCTGGAAAA | + |
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Preference number: 5 (lower is better) Translates to: VKLVVETAHMGISKG*AMQEARGSTVQPGK Trigger: TTTTCCAGGCTGCACGGTCGAGCCCCGGGCTTCTTGCATTGCGCATCCTTTGGAGATCCCCATGTGCGCAGTTTCCACAACCAATTTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS GCA 90 bp | GCCAAGCTCCTTGGACACGGCATGTGTGAAATTGGTTGTGGAAACTaGGCACATGGGGATCTCCAAAGGATGCGCAATGCAAGAAGCCCG | + |
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Preference number: 5 (lower is better) Translates to: AKLLGHGMCEIGCGN*AHGDLQRMRNARSP Trigger: CGGGCTTCTTGCATTGCGCATCCTTTGGAGATCCCCATGTGCGCAGTTTCCACAACCAATTTCACACATGCCGTGTCCAAGGAGCTTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CAA 90 bp | GCAAAACCCTGGCCCAGAATCTTTATTCTAGGGTCATTTCAGCCCTGGACTGCAGAGACATACTCGGCATaGCAGCGGAGGATCTTGCAC | + |
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Preference number: 5 (lower is better) Translates to: AKPWPRIFILGSFQPWTAETYSA*QRRILH Trigger: GTGCAAGATCCTCCGCTGCAATGCCGAGTATGTCTC...TGCAGTCCAGGGCTGAAATGACCCTAGAATAAAGATTCTGGGCCAGGGTTTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS TCA 90 bp | AAGTCGTTATCTAGCAAGGGCCAAGCTCCTTGGACACGGCATGTGTaGAATTGGTTGTGGAAACTGCGCACATGGGGATCTCCAAAGGAT | + |
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Preference number: 5 (lower is better) Translates to: KSLSSKGQAPWTRHV*NWLWKLRTWGSPKD Trigger: ATCCTTTGGAGATCCCCATGTGCGCAGTTTCCACAACCAATTTCACACATGCCGTGTCCAAGGAGCTTGGCCCTTGCTAGATAACGACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS TCA 90 bp | TTCTCTAAATCCGTCAAGAAGATTCGGGCATCGTCCAGAGCTGTCTaGGCTGCCACAGTAAAGTTGGGGTCACCGGAGACTGAAACATCA | + |
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Preference number: 5 (lower is better) Translates to: FSKSVKKIRASSRAV*AATVKLGSPETETS Trigger: TGATGTTTCAGTCTCCGGTGACCCCAACTTTACTGTGGCAGCTCAGACAGCTCTGGACGATGCCCGAATCTTCTTGACGGATTTAGAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CAA 90 bp | GTTTCTCACACCAACCTCTATCCTCAAATCGTTTCCAAACCAGTCATGGGTTGCCAAGGGCCAAGCTCCTaGGACACGGCATGTGTGAAA | + |
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Preference number: 5 (lower is better) Translates to: VSHTNLYPQIVSKPVMGCQGPSS*DTACVK Trigger: TTTCACACATGCCGTGTCCAAGGAGCTTGGCCCTTG...GCAACCCATGACTGGTTTGGAAACGATTTGAGGATAGAGGTTGGTGTGAGAAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CAA 90 bp | GCAAAACCCTGGCCCAGAATCTTTATTCTAGGGTCATTTCAGCCCTGGACTGCACCCAAGGTTAGCAGTTaGAATGGACAAACTCGAGCC | + |
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Preference number: 5 (lower is better) Translates to: AKPWPRIFILGSFQPWTAPKVSS*NGQTRA Trigger: GGCTCGAGTTTGTCCATTCAAACTGCTAACCTTGGG...TGCAGTCCAGGGCTGAAATGACCCTAGAATAAAGATTCTGGGCCAGGGTTTTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CAA 90 bp | TCCTTTAATGTTTCACTGGTCATTAGCACTCTCACAATCTCTAGGCTTGTAGGACCCTGGCGTGAGCAGTaGTGCTGGATCATCAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: SFNVSLVISTLTISRLVGPWREQ*CWIIRS Trigger: GGACCTGATGATCCAGCACAACTGCTCACGCCAGGG...TCCTACAAGCCTAGAGATTGTGAGAGTGCTAATGACCAGTGAAACATTAAAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CAA 90 bp | CTTCCTCTGCCAGACAATGCCCACTTCGTTTCTGAACCAAAAGCTTTTCCTAATGGTCGGTCGCCCCCATaGATAGAACCATCTTCAAAG | + |
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Preference number: 5 (lower is better) Translates to: LPLPDNAHFVSEPKAFPNGRSPP*IEPSSK Trigger: CTTTGAAGATGGTTCTATCAATGGGGGCGACCGACC...ATTAGGAAAAGCTTTTGGTTCAGAAACGAAGTGGGCATTGTCTGGCAGAGGAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS-3UTR CAA 90 bp | CTTCCTCTGCCAGACAATGCCCACTTCGTTTCTGAACCAAAAGCTTTTCCTAATACGGCATGTGTGAAATaGGTTGTGGAAACTGCGCAC | + |
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Preference number: 5 (lower is better) Translates to: LPLPDNAHFVSEPKAFPNTACVK*VVETAH Trigger: GTGCGCAGTTTCCACAACCAATTTCACACATGCCGT...ATTAGGAAAAGCTTTTGGTTCAGAAACGAAGTGGGCATTGTCTGGCAGAGGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS TCA 72 bp | GAGAGCGTAGGAGCGCAGGGCGCGACACAAGCCACCTaGGGCCAGCCCACCACGGCCGCCTCCACGCGGCGT | + |
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Preference number: 6 (lower is better) Translates to: ESVGAQGATQAT*GQPTTAASTRR Trigger: ACGCCGCGTGGAGGCGGCCGTGGTGGGCTGGCCTCAGGTGGCTTGTGTCGCGCCCTGCGCTCCTACGCTCTC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CCA 72 bp | GCCCCACGGCGGTTGCGCTCTGAGCGAGAGAGTCGCTaGCTCGGAGGGCATCCCCCAACACACAGCTGTAGG | + |
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Preference number: 6 (lower is better) Translates to: APRRLRSERESR*LGGHPPTHSCR Trigger: CCTACAGCTGTGTGTTGGGGGATGCCCTCCGAGCCAGCGACTCTCTCGCTCAGAGCGCAACCGCCGTGGGGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS GCA 72 bp | CTCGGAGGGCATCCCCCAACACACAGCTGTAGGTCCTaGTCTGCGGAGAAGGCCCGCGCCACATCCTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: LGGHPPTHSCRS*SAEKARATSSA Trigger: AGCAGAGGATGTGGCGCGGGCCTTCTCCGCAGAGCAGGACCTACAGCTGTGTGTTGGGGGATGCCCTCCGAG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS TCA 72 bp | AGTATCTATGGCTATAGCCCCACGGCGGTTGCGCTCTaGGCGAGAGAGTCGCTGGCTCGGAGGGCATCCCCC | + |
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Preference number: 6 (lower is better) Translates to: SIYGYSPTAVAL*ARESLARRASP Trigger: GGGGGATGCCCTCCGAGCCAGCGACTCTCTCGCTCAGAGCGCAACCGCCGTGGGGCTATAGCCATAGATACT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CCA 72 bp | CGCAATGCAAGAAGCCCGGGGCTCGACCGTGCAGCCTaGAAAACCGGGCCTCATAGTCACAGGGATCTGGGG | + |
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Preference number: 6 (lower is better) Translates to: RNARSPGLDRAA*KTGPHSHRDLG Trigger: CCCCAGATCCCTGTGACTATGAGGCCCGGTTTTCCAGGCTGCACGGTCGAGCCCCGGGCTTCTTGCATTGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CAA 72 bp | CTTCTGGCAGTATCTATGGCTATAGCCCCACGGCGGTaGCGCTCTGAGCGAGAGAGTCGCTGGCTCGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: LLAVSMAIAPRR*RSERESRWLGG Trigger: CCCTCCGAGCCAGCGACTCTCTCGCTCAGAGCGCAACCGCCGTGGGGCTATAGCCATAGATACTGCCAGAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CAA 90 bp | TTACACAGCCTTCTGGCAGTATCTATGGCTATAGCCCCACGGCGGTaGCGCTCTGAGCGAGAGAGTCGCTGGCTCGGAGGGCATCCCCCA | + |
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Preference number: 6 (lower is better) Translates to: LHSLLAVSMAIAPRR*RSERESRWLGGHPP Trigger: TGGGGGATGCCCTCCGAGCCAGCGACTCTCTCGCTCAGAGCGCAACCGCCGTGGGGCTATAGCCATAGATACTGCCAGAAGGCTGTGTAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CCA 72 bp | GCGTGTCCGGTGAGCCACCTCCCCGAAGACTCAGAGTaGACGAGACATACTCGGCATTGCAGCGGAGGATCT | + |
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Preference number: 6 (lower is better) Translates to: ACPVSHLPEDSE*TRHTRHCSGGS Trigger: AGATCCTCCGCTGCAATGCCGAGTATGTCTCGTCCACTCTGAGTCTTCGGGGAGGTGGCTCACCGGACACGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CCA 72 bp | GAACAAAGAGGGCCGAAAGAAGCGGGACTAGGCAGATaGCAGGAGAGAGGGGAGGCCCCGCATCTGAGGGAA | + |
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Preference number: 6 (lower is better) Translates to: EQRGPKEAGLGR*QERGEAPHLRE Trigger: TTCCCTCAGATGCGGGGCCTCCCCTCTCTCCTGCCATCTGCCTAGTCCCGCTTCTTTCGGCCCTCTTTGTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS GCA 72 bp | AAACTGCGCACATGGGGATCTCCAAAGGATGCGCAATaGAAGAAGCCCGGGGCTCGACCGTGCAGCCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: KLRTWGSPKDAQ*KKPGARPCSLE Trigger: TTCCAGGCTGCACGGTCGAGCCCCGGGCTTCTTGCATTGCGCATCCTTTGGAGATCCCCATGTGCGCAGTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS GCA 72 bp | GTTGTGGAAACTGCGCACATGGGGATCTCCAAAGGATaGGCAATGCAAGAAGCCCGGGGCTCGACCGTGCAG | + |
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Preference number: 6 (lower is better) Translates to: VVETAHMGISKG*AMQEARGSTVQ Trigger: CTGCACGGTCGAGCCCCGGGCTTCTTGCATTGCGCATCCTTTGGAGATCCCCATGTGCGCAGTTTCCACAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CCA 72 bp | GCGTTGGCTCCCGACGAAACCGGGGAGCTGGTGGCCTaGACAAAGAGGAAGTCGTTATCTAGCAAGGGCCAA | + |
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Preference number: 6 (lower is better) Translates to: ALAPDETGELVA*TKRKSLSSKGQ Trigger: TTGGCCCTTGCTAGATAACGACTTCCTCTTTGTCCAGGCCACCAGCTCCCCGGTTTCGTCGGGAGCCAACGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS GCA 72 bp | CCCGAAGACTCAGAGTGGACGAGACATACTCGGCATTaGAGCGGAGGATCTTGCACTGGGAGTGAGCCTGTC | + |
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Preference number: 6 (lower is better) Translates to: PEDSEWTRHTRH*SGGSCTGSEPV Trigger: GACAGGCTCACTCCCAGTGCAAGATCCTCCGCTGCAATGCCGAGTATGTCTCGTCCACTCTGAGTCTTCGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CAA 72 bp | AGCTCGAATCTCCACGTGACTCCCAAGGTTAGCAGTTaGAATGGACAAACTCGAGCCCCCAGGTCGGTCGCC | + |
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Preference number: 6 (lower is better) Translates to: SSNLHVTPKVSS*NGQTRAPRSVA Trigger: GGCGACCGACCTGGGGGCTCGAGTTTGTCCATTCAAACTGCTAACCTTGGGAGTCACGTGGAGATTCGAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CAA 72 bp | TTAAATATGATAGTGATCTTCCGGATGGTGGTAGCGTaGGCTCCCGACGAAACCGGGGAGCTGGTGGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: LNMIVIFRMVVA*APDETGELVAW Trigger: CCAGGCCACCAGCTCCCCGGTTTCGTCGGGAGCCAACGCTACCACCATCCGGAAGATCACTATCATATTTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CAA 90 bp | AATGTAGGCAGCTCGAATCTCCACGTGACTCCCAAGGTTAGCAGTTaGAATGGACAAACTCGAGCCCCCAGGTCGGTCGCCCCCATTGAT | + |
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Preference number: 6 (lower is better) Translates to: NVGSSNLHVTPKVSS*NGQTRAPRSVAPID Trigger: ATCAATGGGGGCGACCGACCTGGGGGCTCGAGTTTGTCCATTCAAACTGCTAACCTTGGGAGTCACGTGGAGATTCGAGCTGCCTACATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CAA 72 bp | ATGGACAAACTCGAGCCCCCAGGTCGGTCGCCCCCATaGATAGAACCATCTTCAAAGGCTGCAGGAAGATTG | + |
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Preference number: 6 (lower is better) Translates to: MDKLEPPGRSPP*IEPSSKAAGRL Trigger: CAATCTTCCTGCAGCCTTTGAAGATGGTTCTATCAATGGGGGCGACCGACCTGGGGGCTCGAGTTTGTCCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS TCA 72 bp | TCTAGCAAGGGCCAAGCTCCTTGGACACGGCATGTGTaGAATTGGTTGTGGAAACTGCGCACATGGGGATCT | + |
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Preference number: 6 (lower is better) Translates to: SSKGQAPWTRHV*NWLWKLRTWGS Trigger: AGATCCCCATGTGCGCAGTTTCCACAACCAATTTCACACATGCCGTGTCCAAGGAGCTTGGCCCTTGCTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CAA 72 bp | CAAGGGCCAAGCTCCTTGGACACGGCATGTGTGAAATaGGTTGTGGAAACTGCGCACATGGGGATCTCCAAA | + |
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Preference number: 6 (lower is better) Translates to: QGPSSLDTACVK*VVETAHMGISK Trigger: TTTGGAGATCCCCATGTGCGCAGTTTCCACAACCAATTTCACACATGCCGTGTCCAAGGAGCTTGGCCCTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS CAA 90 bp | TGCATGTTTTTAAATATGATAGTGATCTTCCGGATGGTGGTAGCGTaGGCTCCCGACGAAACCGGGGAGCTGGTGGCCTGGACAAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: CMFLNMIVIFRMVVA*APDETGELVAWTKR Trigger: CCTCTTTGTCCAGGCCACCAGCTCCCCGGTTTCGTCGGGAGCCAACGCTACCACCATCCGGAAGATCACTATCATATTTAAAAACATGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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| CDS GCA 72 bp | CTTGGACACGGCATGTGTGAAATTGGTTGTGGAAACTaGGCACATGGGGATCTCCAAAGGATGCGCAATGCA | + |
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Preference number: 6 (lower is better) Translates to: LGHGMCEIGCGN*AHGDLQRMRNA Trigger: TGCATTGCGCATCCTTTGGAGATCCCCATGTGCGCAGTTTCCACAACCAATTTCACACATGCCGTGTCCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049208.11 |
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