RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HIPK3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027177

Ensembl transcript IDs: ENSMUST00000028600.14, ENSMUST00000111124.8, ENSMUST00000111125.3

Found 240 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGATGAGCACTTaGATTTCCTCTCATTATCTACTCAAGTCATGCCTACTGCACCTC +
Preference number: 1 (lower is better)
Translates to: VCPSKEGAHHESMST*ISSHYLLKSCLLHL
Trigger: GAGGTGCAGTAGGCATGACTTGAGTAGATAATGAGAGGAAATGCAAGTGCTCATCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR GCA 90 bp GCTTATCGCCAGCGTGTGCGAGAGTTGTACTGGTGGTACACAACCTaGTTAGTAAGGAAATGTGTCAATCCAAAACATTTGGAGGTTTAC +
Preference number: 1 (lower is better)
Translates to: AYRQRVRELYWWYTT*LVRKCVNPKHLEVY
Trigger: GTAAACCTCCAAATGTTTTGGATTGACACATTTCCTTACTAAGCAGGTTGTGTACCACCAGTACAACTCTCGCACACGCTGGCGATAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR CCA 90 bp CATGTATCAGAGTTAGCTTATCGCCAGCGTGTGCGAGAGTTGTACTaGTGGTACACAACCTGCTTAGTAAGGAAATGTGTCAATCCAAAA +
Preference number: 1 (lower is better)
Translates to: HVSELAYRQRVRELY*WYTTCLVRKCVNPK
Trigger: TTTTGGATTGACACATTTCCTTACTAAGCAGGTTGTGTACCACCAGTACAACTCTCGCACACGCTGGCGATAAGCTAACTCTGATACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR TCA 90 bp GCTTTTTGTGACAAAGTACAGAAGGCTTGGTCACATTTAAATCACTaGGAACTAGAGAGAAATACTATCGCAAACTGTAATAGACATTAC +
Preference number: 1 (lower is better)
Translates to: AFCDKVQKAWSHLNH*ELERNTIANCNRHY
Trigger: GTAATGTCTATTACAGTTTGCGATAGTATTTCTCTCTAGTTCTCAGTGATTTAAATGTGACCAAGCCTTCTGTACTTTGTCACAAAAAGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR-3UTR CCA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGAAGTCTAGACACAGAATaGCTTCCCAAATGTGGACGT +
Preference number: 2 (lower is better)
Translates to: VLNTARSAQARRAHIMSRSLDTE*LPKCGR
Trigger: ACGTCCACATTTGGGAAGCCATTCTGTGTCTAGACT...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR-3UTR CCA 90 bp GCCACTTTCCTCCCTGTCGTGACACAATCAATCCGTGTACTTGGTGTCTCTGAAATGGCTTCCCAAATGTaGACGTGTCTTGCACTAGTT +
Preference number: 2 (lower is better)
Translates to: ATFLPVVTQSIRVLGVSEMASQM*TCLALV
Trigger: AACTAGTGCAAGACACGTCCACATTTGGGAAGCCAT...TTCAGAGACACCAAGTACACGGATTGATTGTGTCACGACAGGGAGGAAAGTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR-3UTR GCA 90 bp CCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGAACGCAAAACTGGACTTTTaGTCCCATAAGTCACCTGTC +
Preference number: 2 (lower is better)
Translates to: PSLGNVLPMQKTHANVKNAKLDF*SHKSPV
Trigger: GACAGGTGACTTATGGGAGCAAAAGTCCAGTTTTGC...GTTCTTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR-3UTR TCA 90 bp CATCATGAGTCGATGAGCACTTGCATTTCCTCTCATTATCTACTCAAGTCATGCAAACGTTTGTATCATTaGGCTTCCTCAATAGACTGC +
Preference number: 2 (lower is better)
Translates to: HHESMSTCISSHYLLKSCKRLYH*ASSIDC
Trigger: GCAGTCTATTGAGGAAGCTCAATGATACAAACGTTT...GCATGACTTGAGTAGATAATGAGAGGAAATGCAAGTGCTCATCGACTCATGATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR-3UTR CCA 90 bp CACAACCTGCTTAGTAAGGAAATGTGTCAATCCAAAACATTTGGAGGTTTACACTTAAGGCACTATGTGTaGGAACGGTTACAATGCAGC +
Preference number: 2 (lower is better)
Translates to: HNLLSKEMCQSKTFGGLHLRHYV*ERLQCS
Trigger: GCTGCATTGTAACCGTTCCCACACATAGTGCCTTAA...GTGTAAACCTCCAAATGTTTTGGATTGACACATTTCCTTACTAAGCAGGTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR-3UTR TCA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTAGTCCTTCATTTGCAGTaGCTAGAAATGTGCTGCTGG +
Preference number: 2 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLVLHLQ*LEMCCW
Trigger: CCAGCAGCACATTTCTAGTCACTGCAAATGAAGGAC...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR-3UTR GCA 90 bp TTGCATTTCCTCTCATTATCTACTCAAGTCATGCCTACTGCACCTCTAAACATTCACATGTGCATCTGTTaGTCTAAGTCTAGACACAGA +
Preference number: 2 (lower is better)
Translates to: LHFLSLSTQVMPTAPLNIHMCIC*SKSRHR
Trigger: TCTGTGTCTAGACTTAGAGCAACAGATGCACATGTG...AATGTTTAGAGGTGCAGTAGGCATGACTTGAGTAGATAATGAGAGGAAATGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR-3UTR TCA 90 bp TTGCATTTCCTCTCATTATCTACTCAAGTCATGCCTACTGCACCTCTAAACATTCGGTTACAATGCAGCTaGGAGTATTACAACAACATT +
Preference number: 2 (lower is better)
Translates to: LHFLSLSTQVMPTAPLNIRLQCS*EYYNNI
Trigger: AATGTTGTTGTAATACTCTCAGCTGCATTGTAACCG...AATGTTTAGAGGTGCAGTAGGCATGACTTGAGTAGATAATGAGAGGAAATGCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR-3UTR GCA 90 bp CATCATGAGTCGATGAGCACTTGCATTTCCTCTCATTATCTACTCAAGTCATGCCTGAATTATAAGTGCTaGAGTCCAACATTTACAGAT +
Preference number: 2 (lower is better)
Translates to: HHESMSTCISSHYLLKSCLNYKC*SPTFTD
Trigger: ATCTGTAAATGTTGGACTGCAGCACTTATAATTCAG...GCATGACTTGAGTAGATAATGAGAGGAAATGCAAGTGCTCATCGACTCATGATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR-3UTR GCA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTAAAGTTAAGTCAAGCCTaGAAGATACAGCTTTCTCAC +
Preference number: 2 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLKLSQA*KIQLSH
Trigger: GTGAGAAAGCTGTATCTTGCAGGCTTGACTTAACTT...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR-3UTR GCA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTAAAAATCCAGGTCCTCTaGCAGGATGCTAAAATTAGA +
Preference number: 2 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLKIQVL*QDAKIR
Trigger: TCTAATTTTAGCATCCTGGCAGAGGACCTGGATTTT...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR TCA 72 bp CTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATaGGTCGATGAGCACTTGCATTTCCTCTCATTATCT +
Preference number: 3 (lower is better)
Translates to: LHGLPKQGGRTS*VDEHLHFLSLS
Trigger: AGATAATGAGAGGAAATGCAAGTGCTCATCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR TCA 72 bp CAAGCACAGCTTGCTGGGCCACTTTCCTCCCTGTCGTaGCACAATCAATCCGTGTACTTGGTGTCTCTGAAA +
Preference number: 3 (lower is better)
Translates to: QAQLAGPLSSLS*HNQSVYLVSLK
Trigger: TTTCAGAGACACCAAGTACACGGATTGATTGTGTCACGACAGGGAGGAAAGTGGCCCAGCAAGCTGTGCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR TCA 72 bp TCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGATaGGCACTTGCATTTCCTCTCATTATCTACTCAAGT +
Preference number: 3 (lower is better)
Translates to: SAQARRAHIMSR*ALAFPLIIYSS
Trigger: ACTTGAGTAGATAATGAGAGGAAATGCAAGTGCTCATCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR CCA 72 bp GAGTTAGCTTATCGCCAGCGTGTGCGAGAGTTGTACTaGTGGTACACAACCTGCTTAGTAAGGAAATGTGTC +
Preference number: 3 (lower is better)
Translates to: ELAYRQRVRELY*WYTTCLVRKCV
Trigger: GACACATTTCCTTACTAAGCAGGTTGTGTACCACCAGTACAACTCTCGCACACGCTGGCGATAAGCTAACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR GCA 72 bp AATATTCTGCTACTATGTGTTAAATACTGCACGGTCTaGCCAAGCAAGGAGGGCGCACATCATGAGTCGATG +
Preference number: 3 (lower is better)
Translates to: NILLLCVKYCTV*PSKEGAHHESM
Trigger: CATCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACACATAGTAGCAGAATATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR-3UTR CAA 90 bp GTAAAAGCAACTTCATTTAAACATCACCACCATCACCACCAAGGGGAGAGGGGGCAAACGTTTGTATCATaGAGCTTCCTCAATAGACTG +
Preference number: 3 (lower is better)
Translates to: VKATSFKHHHHHHQGERGQTFVS*SFLNRL
Trigger: CAGTCTATTGAGGAAGCTCAATGATACAAACGTTTG...CCCCCTCTCCCCTTGGTGGTGATGGTGGTGATGTTTAAATGAAGTTGCTTTTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR CCA 72 bp TGCTCTAAGTCTAGACACAGAATGGCTTCCCAAATGTaGACGTGTCTTGCACTAGTTAGAAGGCAATTTTAT +
Preference number: 3 (lower is better)
Translates to: CSKSRHRMASQM*TCLALVRRQFY
Trigger: ATAAAATTGCCTTCTAACTAGTGCAAGACACGTCCACATTTGGGAAGCCATTCTGTGTCTAGACTTAGAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR-3UTR CAA 90 bp TTGCATTTCCTCTCATTATCTACTCAAGTCATGCCTACTGCACCTCTAAACATTAGCACTACTAACTGCTaGCTTTTCTTGAAGCTAGAT +
Preference number: 3 (lower is better)
Translates to: LHFLSLSTQVMPTAPLNISTTNC*LFLKLD
Trigger: ATCTAGCTTCAAGAAAAGCAAGCAGTTAGTAGTGCT...AATGTTTAGAGGTGCAGTAGGCATGACTTGAGTAGATAATGAGAGGAAATGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR GCA 72 bp GCATTTCCTCTCATTATCTACTCAAGTCATGCCTACTaGACCTCTAAACATTTTATCAAGTCCAATTATACA +
Preference number: 3 (lower is better)
Translates to: AFPLIIYSSHAY*TSKHFIKSNYT
Trigger: TGTATAATTGGACTTGATAAAATGTTTAGAGGTGCAGTAGGCATGACTTGAGTAGATAATGAGAGGAAATGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR TCA 72 bp ACTAAGCCATTGAATCTATCATTGGGATCGTTAAAATaGATCTTCCTACACCTTGCAGTGTATGATTTAACT +
Preference number: 3 (lower is better)
Translates to: TKPLNLSLGSLK*IFLHLAVYDLT
Trigger: AGTTAAATCATACACTGCAAGGTGTAGGAAGATTCATTTTAACGATCCCAATGATAGATTCAATGGCTTAGT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGAAGGGCAGGAGGCTGGTaGAGCTTTCCGGGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: VLNTARSAQARRAHIMSRRAGGW*SFPGAG
Trigger: GCCTGCCCCCGGAAAGCTGCACCAGCCTCCTGCCCT...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GTAAAAGCAACTTCATTTAAACATCACCACCATCACCACCAAGGGGAGAGGGGGCCCAGGGCAGGAGGCTaGTGCAGCTTTCCGGGGGCA +
Preference number: 4 (lower is better)
Translates to: VKATSFKHHHHHHQGERGPRAGG*CSFPGA
Trigger: TGCCCCCGGAAAGCTGCACCAGCCTCCTGCCCTGGG...CCCCCTCTCCCCTTGGTGGTGATGGTGGTGATGTTTAAATGAAGTTGCTTTTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR CAA 72 bp AATACAGAGAGAGCACGCCTAGGCAGCAAGCACAGCTaGCTGGGCCACTTTCCTCCCTGTCGTGACACAATC +
Preference number: 4 (lower is better)
Translates to: NTERARLGSKHS*LGHFPPCRDTI
Trigger: GATTGTGTCACGACAGGGAGGAAAGTGGCCCAGCAAGCTGTGCTTGCTGCCTAGGCGTGCTCTCTCTGTATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGATTGGTAGTGGCAGGCTaGGGCCAGACAACATGTGCA +
Preference number: 4 (lower is better)
Translates to: VLNTARSAQARRAHIMSRLVVAG*GQTTCA
Trigger: TGCACATGTTGTCTGGCCTCAGCCTGCCACTACCAA...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp GTAAAAGCAACTTCATTTAAACATCACCACCATCACCACCAAGGGGAGAGGGGGTCCACAACCGAACTGTaGAGTCCCCGCCTGCAGAGG +
Preference number: 4 (lower is better)
Translates to: VKATSFKHHHHHHQGERGSTTEL*SPRLQR
Trigger: CCTCTGCAGGCGGGGACTGCACAGTTCGGTTGTGGA...CCCCCTCTCCCCTTGGTGGTGATGGTGGTGATGTTTAAATGAAGTTGCTTTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGAGGGGTTTATGCCCACTaGGACTTGGTGAACTATGCC +
Preference number: 4 (lower is better)
Translates to: VLNTARSAQARRAHIMSRGVYAH*DLVNYA
Trigger: GGCATAGTTCACCAAGTCCCAGTGGGCATAAACCCC...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp CCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGAACCGGGCTGGACTGCCCTaGGGAGCTGGTGCTCAGAGT +
Preference number: 4 (lower is better)
Translates to: PSLGNVLPMQKTHANVKNRAGLP*GAGAQS
Trigger: ACTCTGAGCACCAGCTCCTCAGGGCAGTCCAGCCCG...GTTCTTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGATTTAACCCGCATCGCTaGGGCCCTTCTAGGAAATGT +
Preference number: 4 (lower is better)
Translates to: VLNTARSAQARRAHIMSRFNPHR*GPSRKC
Trigger: ACATTTCCTAGAAGGGCCCCAGCGATGCGGGTTAAA...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp CCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGAACTGCAAGGGGACGGGCTaGACTGCCCTGAGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: PSLGNVLPMQKTHANVKNCKGTG*TALRSW
Trigger: CCAGCTCCTCAGGGCAGTCCAGCCCGTCCCCTTGCA...GTTCTTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp GTAAAAGCAACTTCATTTAAACATCACCACCATCACCACCAAGGGGAGAGGGGGCAGTCTCCAAGCCTCTaGGAACCAGCCATGCCTTCA +
Preference number: 4 (lower is better)
Translates to: VKATSFKHHHHHHQGERGQSPSL*EPAMPS
Trigger: TGAAGGCATGGCTGGTTCTCAGAGGCTTGGAGACTG...CCCCCTCTCCCCTTGGTGGTGATGGTGGTGATGTTTAAATGAAGTTGCTTTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp TTTGCTCCCATAAGTCACCTGTCTATAGAGTTACTACATAAGAAGATACATGACCACCACGGCCCGCGGTaGCTCCACTCCAGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: FAPISHLSIELLHKKIHDHHGPR*LHSSLL
Trigger: CAGCAGGCTGGAGTGGAGGCACCGCGGGCCGTGGTG...GTCATGTATCTTCTTATGTAGTAACTCTATAGACAGGTGACTTATGGGAGCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGACAACCTGGCCAAAAGTaGCACGACCAAGAAAATCCA +
Preference number: 4 (lower is better)
Translates to: VLNTARSAQARRAHIMSRQPGQK*HDQENP
Trigger: TGGATTTTCTTGGTCGTGGCACTTTTGGCCAGGTTG...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp GTAAAAGCAACTTCATTTAAACATCACCACCATCACCACCAAGGGGAGAGGGGGGCCATGGGTGTTACCTaGTGCCAGGCAGGTATTAGC +
Preference number: 4 (lower is better)
Translates to: VKATSFKHHHHHHQGERGAMGVT*CQAGIS
Trigger: GCTAATACCTGCCTGGCAGCAGGTAACACCCATGGC...CCCCCTCTCCCCTTGGTGGTGATGGTGGTGATGTTTAAATGAAGTTGCTTTTAC
51% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp CCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGAACGGAGAGGCTAGGAGGTaGGCCACGGGTGCAGCACTA +
Preference number: 4 (lower is better)
Translates to: PSLGNVLPMQKTHANVKNGEARR*ATGAAL
Trigger: TAGTGCTGCACCCGTGGCCCACCTCCTAGCCTCTCC...GTTCTTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp AGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAAGGTTCAAATGCTGCTaGGGGAACGCTGCTGCGGGC +
Preference number: 4 (lower is better)
Translates to: RAKSRQRFAHAKDTCKCKRFKCC*GNAAAG
Trigger: GCCCGCAGCAGCGTTCCCTCAGCAGCATTTGAACCT...TTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGATCCAGTATACGCAGGTaGTGCTGCAATGTAAGAATG +
Preference number: 4 (lower is better)
Translates to: VLNTARSAQARRAHIMSRSSIRR*CCNVRM
Trigger: CATTCTTACATTGCAGCATCACCTGCGTATACTGGA...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp CCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGAACACTCCAGGTCGGATCTaGAGAGGCTGCACAGCTGGG +
Preference number: 4 (lower is better)
Translates to: PSLGNVLPMQKTHANVKNTPGRI*RGCTAG
Trigger: CCCAGCTGTGCAGCCTCTGCAGATCCGACCTGGAGT...GTTCTTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGATCTGAGAACCAGCCATaGCTTCAGAAGTTAGTGTTG +
Preference number: 4 (lower is better)
Translates to: VLNTARSAQARRAHIMSRSENQP*LQKLVL
Trigger: CAACACTAACTTCTGAAGGCATGGCTGGTTCTCAGA...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp TTGCATTTCCTCTCATTATCTACTCAAGTCATGCCTACTGCACCTCTAAACATTGAGGTGGGCCACGGGTaGAGCACTACTGAGGGAGGC +
Preference number: 4 (lower is better)
Translates to: LHFLSLSTQVMPTAPLNIEVGHG*STTEGG
Trigger: GCCTCCCTCAGTAGTGCTGCACCCGTGGCCCACCTC...AATGTTTAGAGGTGCAGTAGGCATGACTTGAGTAGATAATGAGAGGAAATGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GCCACTTTCCTCCCTGTCGTGACACAATCAATCCGTGTACTTGGTGTCTCTGAATCTGCTTCGATCCTGTaGTCGCTGTCACAACTGTCA +
Preference number: 4 (lower is better)
Translates to: ATFLPVVTQSIRVLGVSESASIL*SLSQLS
Trigger: TGACAGTTGTGACAGCGACCACAGGATCGAAGCAGA...TTCAGAGACACCAAGTACACGGATTGATTGTGTCACGACAGGGAGGAAAGTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGAATTTCTTCAGTGCAGTaGCCACTTGCTGAAGAACAG +
Preference number: 4 (lower is better)
Translates to: VLNTARSAQARRAHIMSRISSVQ*PLAEEQ
Trigger: CTGTTCTTCAGCAAGTGGCCACTGCACTGAAGAAAT...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GTAAAAGCAACTTCATTTAAACATCACCACCATCACCACCAAGGGGAGAGGGGGTTAACCCTGTACGGCTaGCGAACAGGATCCACCAAC +
Preference number: 4 (lower is better)
Translates to: VKATSFKHHHHHHQGERGLTLYG*RTGSTN
Trigger: GTTGGTGGATCCTGTTCGCCAGCCGTACAGGGTTAA...CCCCCTCTCCCCTTGGTGGTGATGGTGGTGATGTTTAAATGAAGTTGCTTTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp CATCATGAGTCGATGAGCACTTGCATTTCCTCTCATTATCTACTCAAGTCATGCCAGAGGCTGCACAGCTaGGGCCTGAGTTACAAGCGG +
Preference number: 4 (lower is better)
Translates to: HHESMSTCISSHYLLKSCQRLHS*GLSYKR
Trigger: CCGCTTGTAACTCAGGCCCCAGCTGTGCAGCCTCTG...GCATGACTTGAGTAGATAATGAGAGGAAATGCAAGTGCTCATCGACTCATGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GTAAAAGCAACTTCATTTAAACATCACCACCATCACCACCAAGGGGAGAGGGGGACTGTTCTCTGCAAATaGACTGTCGTGCCCCGAGGA +
Preference number: 4 (lower is better)
Translates to: VKATSFKHHHHHHQGERGTVLCK*TVVPRG
Trigger: TCCTCGGGGCACGACAGTCCATTTGCAGAGAACAGT...CCCCCTCTCCCCTTGGTGGTGATGGTGGTGATGTTTAAATGAAGTTGCTTTTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGATATCGTCCAGACTGTTaGATATGTACTTTCTGGCCT +
Preference number: 4 (lower is better)
Translates to: VLNTARSAQARRAHIMSRYRPDC*ICTFWP
Trigger: AGGCCAGAAAGTACATATTCAACAGTCTGGACGATA...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp CATCATGAGTCGATGAGCACTTGCATTTCCTCTCATTATCTACTCAAGTCATGCCCCACTGGGACTTGGTaGACTATGCCACTGGGATGG +
Preference number: 4 (lower is better)
Translates to: HHESMSTCISSHYLLKSCPTGTW*TMPLGW
Trigger: CCATCCCAGTGGCATAGTTCACCAAGTCCCAGTGGG...GCATGACTTGAGTAGATAATGAGAGGAAATGCAAGTGCTCATCGACTCATGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp GCCACTTTCCTCCCTGTCGTGACACAATCAATCCGTGTACTTGGTGTCTCTGAACTTCATTCCTGTCTCTaGCTCATGCTCTTCCAGTGT +
Preference number: 4 (lower is better)
Translates to: ATFLPVVTQSIRVLGVSELHSCL*LMLFQC
Trigger: ACACTGGAAGAGCATGAGGCAGAGACAGGAATGAAG...TTCAGAGACACCAAGTACACGGATTGATTGTGTCACGACAGGGAGGAAAGTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp CATCATGAGTCGATGAGCACTTGCATTTCCTCTCATTATCTACTCAAGTCATGCGCCCTGAGGAGCTGGTaGTCAGAGTGCTATCAGGAC +
Preference number: 4 (lower is better)
Translates to: HHESMSTCISSHYLLKSCALRSW*SECYQD
Trigger: GTCCTGATAGCACTCTGAGCACCAGCTCCTCAGGGC...GCATGACTTGAGTAGATAATGAGAGGAAATGCAAGTGCTCATCGACTCATGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp CCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGAACTGCTGTTCGGTCTCTTaGAAGGGGACGGGCTGGACT +
Preference number: 4 (lower is better)
Translates to: PSLGNVLPMQKTHANVKNCCSVS*KGTGWT
Trigger: AGTCCAGCCCGTCCCCTTGCAAGAGACCGAACAGCA...GTTCTTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp GCCACTTTCCTCCCTGTCGTGACACAATCAATCCGTGTACTTGGTGTCTCTGAACACAAAACTGTTCTCTaGAAATGGACTGTCGTGCCC +
Preference number: 4 (lower is better)
Translates to: ATFLPVVTQSIRVLGVSEHKTVL*KWTVVP
Trigger: GGGCACGACAGTCCATTTGCAGAGAACAGTTTTGTG...TTCAGAGACACCAAGTACACGGATTGATTGTGTCACGACAGGGAGGAAAGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGAGTAATGATTGCTGTGTaGAATCATTTTCCCCCAGTC +
Preference number: 4 (lower is better)
Translates to: VLNTARSAQARRAHIMSRVMIAV*NHFPPV
Trigger: GACTGGGGGAAAATGATTCCACACAGCAATCATTAC...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GCCACTTTCCTCCCTGTCGTGACACAATCAATCCGTGTACTTGGTGTCTCTGAAACTGAGTCTGATGAATaGTTGGGGATGGTAACAGGC +
Preference number: 4 (lower is better)
Translates to: ATFLPVVTQSIRVLGVSETESDE*LGMVTG
Trigger: GCCTGTTACCATCCCCAACCATTCATCAGACTCAGT...TTCAGAGACACCAAGTACACGGATTGATTGTGTCACGACAGGGAGGAAAGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp ATTACAACAACATTAAGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACGGCACCTGCCTGCAATaGAAAGCTGTGTCCTCGAGG +
Preference number: 4 (lower is better)
Translates to: ITTTLRAKSRQRFAHAKDGTCLQ*KAVSSR
Trigger: CCTCGAGGACACAGCTTTTCATTGCAGGCAGGTGCC...GTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCTTAATGTTGTTGTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp ATTACAACAACATTAAGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACTGCATCGCGCCGCTGTaGTTCTCCAACTCCTCACTC +
Preference number: 4 (lower is better)
Translates to: ITTTLRAKSRQRFAHAKDCIAPL*FSNSSL
Trigger: GAGTGAGGAGTTGGAGAATCACAGCGGCGCGATGCA...GTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCTTAATGTTGTTGTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GCCACTTTCCTCCCTGTCGTGACACAATCAATCCGTGTACTTGGTGTCTCTGAAAATACCTTGGATAGCTaGGGGACAGATAATCAGGGT +
Preference number: 4 (lower is better)
Translates to: ATFLPVVTQSIRVLGVSENTLDS*GTDNQG
Trigger: ACCCTGATTATCTGTCCCCCAGCTATCCAAGGTATT...TTCAGAGACACCAAGTACACGGATTGATTGTGTCACGACAGGGAGGAAAGTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp CCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGAACACTGCCCTGAGGAGCTaGTGCTCAGAGTGCTATCAG +
Preference number: 4 (lower is better)
Translates to: PSLGNVLPMQKTHANVKNTALRS*CSECYQ
Trigger: CTGATAGCACTCTGAGCACCAGCTCCTCAGGGCAGT...GTTCTTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp TTGCATTTCCTCTCATTATCTACTCAAGTCATGCCTACTGCACCTCTAAACATTTTCTCTCCCCACCGGTaGCTCCACAGCAGTGCCAAC +
Preference number: 4 (lower is better)
Translates to: LHFLSLSTQVMPTAPLNIFSPHR*LHSSAN
Trigger: GTTGGCACTGCTGTGGAGCCACCGGTGGGGAGAGAA...AATGTTTAGAGGTGCAGTAGGCATGACTTGAGTAGATAATGAGAGGAAATGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GTAAAAGCAACTTCATTTAAACATCACCACCATCACCACCAAGGGGAGAGGGGGCTGGCCTTTTCTCAATaGCTGGCATGTAGAATCCGT +
Preference number: 4 (lower is better)
Translates to: VKATSFKHHHHHHQGERGLAFSQ*LACRIR
Trigger: ACGGATTCTACATGCCAGCCATTGAGAAAAGGCCAG...CCCCCTCTCCCCTTGGTGGTGATGGTGGTGATGTTTAAATGAAGTTGCTTTTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGACACATATATGGATACTaGCTGAGTTTTGTTGGACTC +
Preference number: 4 (lower is better)
Translates to: VLNTARSAQARRAHIMSRHIYGY*LSFVGL
Trigger: GAGTCCAACAAAACTCAGCCAGTATCCATATATGTG...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp AGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGATCACGCATCCCAGTaGCCACATGTCTATGGCTTC +
Preference number: 4 (lower is better)
Translates to: RAKSRQRFAHAKDTCKCKDHASQ*PHVYGF
Trigger: GAAGCCATAGACATGTGGTCACTGGGATGCGTGATC...TTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp AGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAAGACCATGTCTGCTGTaGAAGGACTCCAGGTCGGAT +
Preference number: 4 (lower is better)
Translates to: RAKSRQRFAHAKDTCKCKRPCLL*KDSRSD
Trigger: ATCCGACCTGGAGTCCTTTCACAGCAGACATGGTCT...TTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp TTTGCTCCCATAAGTCACCTGTCTATAGAGTTACTACATAAGAAGATACATGACGTGCCCCGAGGAGTCTaGTGTTGGAGAGCCATCCAC +
Preference number: 4 (lower is better)
Translates to: FAPISHLSIELLHKKIHDVPRGV*CWRAIH
Trigger: GTGGATGGCTCTCCAACATCAGACTCCTCGGGGCAC...GTCATGTATCTTCTTATGTAGTAACTCTATAGACAGGTGACTTATGGGAGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp CATCATGAGTCGATGAGCACTTGCATTTCCTCTCATTATCTACTCAAGTCATGCAGGCCAGACAACATGTaGAATGCCCACGCTGATAGG +
Preference number: 4 (lower is better)
Translates to: HHESMSTCISSHYLLKSCRPDNM*NAHADR
Trigger: CCTATCAGCGTGGGCATTGCACATGTTGTCTGGCCT...GCATGACTTGAGTAGATAATGAGAGGAAATGCAAGTGCTCATCGACTCATGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GTAAAAGCAACTTCATTTAAACATCACCACCATCACCACCAAGGGGAGAGGGGGCCCCAATATAATCTCTaGAGCTCTGTAGTAGCGAGA +
Preference number: 4 (lower is better)
Translates to: VKATSFKHHHHHHQGERGPQYNL*SSVVAR
Trigger: TCTCGCTACTACAGAGCTCCAGAGATTATATTGGGG...CCCCCTCTCCCCTTGGTGGTGATGGTGGTGATGTTTAAATGAAGTTGCTTTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGAATATTAACGAATGGGTaGTTCAGAGTCTCAATTGGA +
Preference number: 4 (lower is better)
Translates to: VLNTARSAQARRAHIMSRILTNG*FRVSIG
Trigger: TCCAATTGAGACTCTGAACCACCCATTCGTTAATAT...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTACGGCAGCAGGAGCCATaGGTGTTACCTGCTGCCAGG +
Preference number: 4 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLRQQEP*VLPAAR
Trigger: CCTGGCAGCAGGTAACACCCATGGCTCCTGCTGCCG...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTAAGCTGGCTTGGCTTCTaGGCCAGCACAGGTCCCCAG +
Preference number: 4 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLSWLGF*ASTGPQ
Trigger: CTGGGGACCTGTGCTGGCCCAGAAGCCAAGCCAGCT...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp TTTGCTCCCATAAGTCACCTGTCTATAGAGTTACTACATAAGAAGATACATGACAGCAGTGCCAACAGCTaGCTTGGCTTCTGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: FAPISHLSIELLHKKIHDSSANS*LGFWAS
Trigger: GCTGGCCCAGAAGCCAAGCCAGCTGTTGGCACTGCT...GTCATGTATCTTCTTATGTAGTAACTCTATAGACAGGTGACTTATGGGAGCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTAGCAGTGGCCACTTGCTaGAGAACAGGCCGGATCACC +
Preference number: 4 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLAVATC*RTGRIT
Trigger: GGTGATCCGGCCTGTTCTTCAGCAAGTGGCCACTGC...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp GTAAAAGCAACTTCATTTAAACATCACCACCATCACCACCAAGGGGAGAGGGGGAACCTCCAACCAGAATaGGACATATCTGTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: VKATSFKHHHHHHQGERGNLQPE*DISVSL
Trigger: CAGAGAAACAGATATGTCTCATTCTGGTTGGAGGTT...CCCCCTCTCCCCTTGGTGGTGATGGTGGTGATGTTTAAATGAAGTTGCTTTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp ATTACAACAACATTAAGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACTGGTGCACAACAGAGTaGGCAGATGTGGTTAACGCC +
Preference number: 4 (lower is better)
Translates to: ITTTLRAKSRQRFAHAKDWCTTE*ADVVNA
Trigger: GGCGTTAACCACATCTGCTCACTCTGTTGTGCACCA...GTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCTTAATGTTGTTGTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp TTGCATTTCCTCTCATTATCTACTCAAGTCATGCCTACTGCACCTCTAAACATTTGCACAGCTGGGGCCTaGGTTACAAGCGGAACTGTA +
Preference number: 4 (lower is better)
Translates to: LHFLSLSTQVMPTAPLNICTAGA*VTSGTV
Trigger: TACAGTTCCGCTTGTAACTCAGGCCCCAGCTGTGCA...AATGTTTAGAGGTGCAGTAGGCATGACTTGAGTAGATAATGAGAGGAAATGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTACGGGTGCAGCACTACTaGGGGAGGCTGATGATGGGT +
Preference number: 4 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLRVQHY*GRLMMG
Trigger: ACCCATCATCAGCCTCCCTCAGTAGTGCTGCACCCG...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp TTGCATTTCCTCTCATTATCTACTCAAGTCATGCCTACTGCACCTCTAAACATTCCGCCTGCAGAGGTATaGCATGGTGCACAACAGAGT +
Preference number: 4 (lower is better)
Translates to: LHFLSLSTQVMPTAPLNIPPAEV*HGAQQS
Trigger: ACTCTGTTGTGCACCATGGCATACCTCTGCAGGCGG...AATGTTTAGAGGTGCAGTAGGCATGACTTGAGTAGATAATGAGAGGAAATGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp CACAACCTGCTTAGTAAGGAAATGTGTCAATCCAAAACATTTGGAGGTTTACACACAGGCGGGGGTTTATaGCCACTGGGACTTGGTGAA +
Preference number: 4 (lower is better)
Translates to: HNLLSKEMCQSKTFGGLHTGGGL*PLGLGE
Trigger: TTCACCAAGTCCCAGTGGGCATAAACCCCCGCCTGT...GTGTAAACCTCCAAATGTTTTGGATTGACACATTTCCTTACTAAGCAGGTTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GCCACTTTCCTCCCTGTCGTGACACAATCAATCCGTGTACTTGGTGTCTCTGAAGAAAACACAACCGCTTaGCTCTACTTTGAGTTTCTT +
Preference number: 4 (lower is better)
Translates to: ATFLPVVTQSIRVLGVSEENTTA*LYFEFL
Trigger: AAGAAACTCAAAGTAGAGCCAAGCGGTTGTGTTTTC...TTCAGAGACACCAAGTACACGGATTGATTGTGTCACGACAGGGAGGAAAGTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GTAAAAGCAACTTCATTTAAACATCACCACCATCACCACCAAGGGGAGAGGGGGTTATGGAATAACTGGTaGGTTTACCATGTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: VKATSFKHHHHHHQGERGLWNNW*VYHVLQ
Trigger: CTGCAGCACATGGTAAACCCACCAGTTATTCCATAA...CCCCCTCTCCCCTTGGTGGTGATGGTGGTGATGTTTAAATGAAGTTGCTTTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGAGAATTACTCCTGTTCTaGCACAACTTATTTTTCTTG +
Preference number: 4 (lower is better)
Translates to: VLNTARSAQARRAHIMSRELLLF*HNLFFL
Trigger: CAAGAAAAATAAGTTGTGCCAGAACAGGAGTAATTC...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp CCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGAACTCAGGGGCAGGGGACTaGATTTATTCTGTTTCAGGA +
Preference number: 4 (lower is better)
Translates to: PSLGNVLPMQKTHANVKNSGAGD*IYSVSG
Trigger: TCCTGAAACAGAATAAATTCAGTCCCCTGCCCCTGA...GTTCTTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp TTGCATTTCCTCTCATTATCTACTCAAGTCATGCCTACTGCACCTCTAAACATTTCCGGCCTCTCCTTCTaGGGTATGATTGTCCTGTGT +
Preference number: 4 (lower is better)
Translates to: LHFLSLSTQVMPTAPLNISGLSF*GMIVLC
Trigger: ACACAGGACAATCATACCTCAGAAGGAGAGGCCGGA...AATGTTTAGAGGTGCAGTAGGCATGACTTGAGTAGATAATGAGAGGAAATGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp GCCACTTTCCTCCCTGTCGTGACACAATCAATCCGTGTACTTGGTGTCTCTGAATGGAAGGATGAGAATTaGCAAAGTTTCTACCATTCA +
Preference number: 4 (lower is better)
Translates to: ATFLPVVTQSIRVLGVSEWKDEN*QSFYHS
Trigger: TGAATGGTAGAAACTTTGGCAATTCTCATCCTTCCA...TTCAGAGACACCAAGTACACGGATTGATTGTGTCACGACAGGGAGGAAAGTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp CACAACCTGCTTAGTAAGGAAATGTGTCAATCCAAAACATTTGGAGGTTTACACCCAACTCCTCACTCTTaGGCTTTAACCCGCATCGCT +
Preference number: 4 (lower is better)
Translates to: HNLLSKEMCQSKTFGGLHPTPHS*ALTRIA
Trigger: AGCGATGCGGGTTAAAGCGCAAGAGTGAGGAGTTGG...GTGTAAACCTCCAAATGTTTTGGATTGACACATTTCCTTACTAAGCAGGTTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp CATCATGAGTCGATGAGCACTTGCATTTCCTCTCATTATCTACTCAAGTCATGCGGACTTGGTGAACTATaGCACTGGGATGGGAGATAT +
Preference number: 4 (lower is better)
Translates to: HHESMSTCISSHYLLKSCGLGEL*HWDGRY
Trigger: ATATCTCCCATCCCAGTGGCATAGTTCACCAAGTCC...GCATGACTTGAGTAGATAATGAGAGGAAATGCAAGTGCTCATCGACTCATGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp GCCACTTTCCTCCCTGTCGTGACACAATCAATCCGTGTACTTGGTGTCTCTGAAACATTGCAGGAAGTATaGACAGTTCATCAACAATCT +
Preference number: 4 (lower is better)
Translates to: ATFLPVVTQSIRVLGVSETLQEV*TVHQQS
Trigger: AGATTGTTGATGAACTGTCCATACTTCCTGCAATGT...TTCAGAGACACCAAGTACACGGATTGATTGTGTCACGACAGGGAGGAAAGTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp CCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGAACTTTCCATTCCATTCTTaGTGCCCAGTTCCGAAATGC +
Preference number: 4 (lower is better)
Translates to: PSLGNVLPMQKTHANVKNFPFHS*CPVPKC
Trigger: GCATTTCGGAACTGGGCATCAAGAATGGAATGGAAA...GTTCTTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp TTTGCTCCCATAAGTCACCTGTCTATAGAGTTACTACATAAGAAGATACATGACGCAAATGGACTGTCGTaGCCCGAGGAGTCTGATGTT +
Preference number: 4 (lower is better)
Translates to: FAPISHLSIELLHKKIHDANGLS*PEESDV
Trigger: AACATCAGACTCCTCGGGGCACGACAGTCCATTTGC...GTCATGTATCTTCTTATGTAGTAACTCTATAGACAGGTGACTTATGGGAGCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp CATCATGAGTCGATGAGCACTTGCATTTCCTCTCATTATCTACTCAAGTCATGCGCTTGCTGTCTTCGATaGCCAAAGTTTCCATTCCAT +
Preference number: 4 (lower is better)
Translates to: HHESMSTCISSHYLLKSCACCLR*PKFPFH
Trigger: ATGGAATGGAAACTTTGGGCATCGAAGACAGCAAGC...GCATGACTTGAGTAGATAATGAGAGGAAATGCAAGTGCTCATCGACTCATGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp CCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGAACCTGGGTTTCCCATGTTaGTTTGCAACATTGCAGGAA +
Preference number: 4 (lower is better)
Translates to: PSLGNVLPMQKTHANVKNLGFPC*FATLQE
Trigger: TTCCTGCAATGTTGCAAACCAACATGGGAAACCCAG...GTTCTTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp CCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGAACGGTGAACTATGCCACTaGGATGGGAGATATTGTAAG +
Preference number: 4 (lower is better)
Translates to: PSLGNVLPMQKTHANVKNGELCH*DGRYCK
Trigger: CTTACAATATCTCCCATCCCAGTGGCATAGTTCACC...GTTCTTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp CCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGAACATCAGGACTGCTGAGTaGACACATCCGATCAATATT +
Preference number: 4 (lower is better)
Translates to: PSLGNVLPMQKTHANVKNIRTAE*THPINI
Trigger: AATATTGATCGGATGTGTTCACTCAGCAGTCCTGAT...GTTCTTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp CACAACCTGCTTAGTAAGGAAATGTGTCAATCCAAAACATTTGGAGGTTTACACTGCTATCAGGACTGCTaGGTGAACACATCCGATCAA +
Preference number: 4 (lower is better)
Translates to: HNLLSKEMCQSKTFGGLHCYQDC*VNTSDQ
Trigger: TTGATCGGATGTGTTCACTCAGCAGTCCTGATAGCA...GTGTAAACCTCCAAATGTTTTGGATTGACACATTTCCTTACTAAGCAGGTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp AGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAATGGTTAGGACTTCCATaGGAAAGCGTGAATGGATTA +
Preference number: 4 (lower is better)
Translates to: RAKSRQRFAHAKDTCKCKWLGLP*ESVNGL
Trigger: TAATCCATTCACGCTTTCTCATGGAAGTCCTAACCA...TTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp GTAAAAGCAACTTCATTTAAACATCACCACCATCACCACCAAGGGGAGAGGGGGGGAAAATCTAGTAGATaGTTCATATTAACGAATGGG +
Preference number: 4 (lower is better)
Translates to: VKATSFKHHHHHHQGERGGKSSR*FILTNG
Trigger: CCCATTCGTTAATATGAAGCATCTACTAGATTTTCC...CCCCCTCTCCCCTTGGTGGTGATGGTGGTGATGTTTAAATGAAGTTGCTTTTAC
42% GC, longest homopolymer 7 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp CACAACCTGCTTAGTAAGGAAATGTGTCAATCCAAAACATTTGGAGGTTTACACGGGTTTACCATGTGCTaGAGGAATACCTTGGATAGC +
Preference number: 4 (lower is better)
Translates to: HNLLSKEMCQSKTFGGLHGFTMC*RNTLDS
Trigger: GCTATCCAAGGTATTCCTGCAGCACATGGTAAACCC...GTGTAAACCTCCAAATGTTTTGGATTGACACATTTCCTTACTAAGCAGGTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp ATTACAACAACATTAAGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACGCAATGATGATGGTTTaGCGCTGTTTGTCTGAGACT +
Preference number: 4 (lower is better)
Translates to: ITTTLRAKSRQRFAHAKDAMMMV*RCLSET
Trigger: AGTCTCAGACAAACAGCGGCAAACCATCATCATTGC...GTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCTTAATGTTGTTGTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp ATTACAACAACATTAAGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACGTTCATCATCTGACATaGTGTTCGGTCTCTTGCAAG +
Preference number: 4 (lower is better)
Translates to: ITTTLRAKSRQRFAHAKDVHHLT*CSVSCK
Trigger: CTTGCAAGAGACCGAACAGCATGTCAGATGATGAAC...GTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCTTAATGTTGTTGTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTAGTACTTCCAGCCAGATaGGCATGTACTGCTGTGTGG +
Preference number: 4 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLVLPAR*ACTAVW
Trigger: CCACACAGCAGTACATGCCCATCTGGCTGGAAGTAC...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp ATTACAACAACATTAAGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACCCTTTCGTGGAAGGATaGGAATTGCCAAAGTTTCTA +
Preference number: 4 (lower is better)
Translates to: ITTTLRAKSRQRFAHAKDPFVEG*ELPKFL
Trigger: TAGAAACTTTGGCAATTCTCATCCTTCCACGAAAGG...GTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCTTAATGTTGTTGTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp TTGCATTTCCTCTCATTATCTACTCAAGTCATGCCTACTGCACCTCTAAACATTACAGTCTTTGATACATaGCTGGCCGATCCAAAGTCT +
Preference number: 4 (lower is better)
Translates to: LHFLSLSTQVMPTAPLNITVFDT*LADPKS
Trigger: AGACTTTGGATCGGCCAGTCATGTATCAAAGACTGT...AATGTTTAGAGGTGCAGTAGGCATGACTTGAGTAGATAATGAGAGGAAATGCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp TTTGCTCCCATAAGTCACCTGTCTATAGAGTTACTACATAAGAAGATACATGACGAGGGGCTGATAATGTaGTCTGGTTGGTTAGAAGAG +
Preference number: 4 (lower is better)
Translates to: FAPISHLSIELLHKKIHDEGLIM*SGWLEE
Trigger: CTCTTCTAACCAACCAGATCACATTATCAGCCCCTC...GTCATGTATCTTCTTATGTAGTAACTCTATAGACAGGTGACTTATGGGAGCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp AGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAATTTCCCATGTTGGTTTaGAACATTGCAGGAAGTATG +
Preference number: 4 (lower is better)
Translates to: RAKSRQRFAHAKDTCKCKFPMLV*NIAGSM
Trigger: CATACTTCCTGCAATGTTGCAAACCAACATGGGAAA...TTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp TTGCATTTCCTCTCATTATCTACTCAAGTCATGCCTACTGCACCTCTAAACATTCTCTGTACTCAGCCTTaGCAAGATGCTCACTTCTAT +
Preference number: 4 (lower is better)
Translates to: LHFLSLSTQVMPTAPLNILCTQP*QDAHFY
Trigger: ATAGAAGTGAGCATCTTGGCAAGGCTGAGTACAGAG...AATGTTTAGAGGTGCAGTAGGCATGACTTGAGTAGATAATGAGAGGAAATGCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp TTTGCTCCCATAAGTCACCTGTCTATAGAGTTACTACATAAGAAGATACATGACGGTGGGTTTACCATGTaGTGCAGGAATACCTTGGAT +
Preference number: 4 (lower is better)
Translates to: FAPISHLSIELLHKKIHDGGFTM*CRNTLD
Trigger: ATCCAAGGTATTCCTGCAGCACATGGTAAACCCACC...GTCATGTATCTTCTTATGTAGTAACTCTATAGACAGGTGACTTATGGGAGCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp CCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGAACGGGATATTGGTGTTCTaGAATGAATTACTCCTGTTC +
Preference number: 4 (lower is better)
Translates to: PSLGNVLPMQKTHANVKNGILVF*NELLLF
Trigger: GAACAGGAGTAATTCATTGCAGAACACCAATATCCC...GTTCTTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp AGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAAATGGTATCTTTGTCTaGAAAGCACTACCTTTCGTG +
Preference number: 4 (lower is better)
Translates to: RAKSRQRFAHAKDTCKCKNGIFV*KALPFV
Trigger: CACGAAAGGTAGTGCTTTCCAGACAAAGATACCATT...TTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTAGCTGCAGGAATACCTTaGATAGCTGGGGGACAGATA +
Preference number: 4 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLAAGIP*IAGGQI
Trigger: TATCTGTCCCCCAGCTATCCAAGGTATTCCTGCAGC...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTAACAATGGCACCTGCCTaGAATGAAAAGCTGTGTCCT +
Preference number: 4 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLTMAPA*NEKLCP
Trigger: AGGACACAGCTTTTCATTGCAGGCAGGTGCCATTGT...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp CACAACCTGCTTAGTAAGGAAATGTGTCAATCCAAAACATTTGGAGGTTTACACACTAGTAGGAATATATaGTTGCTGTCTTCGATGCCC +
Preference number: 4 (lower is better)
Translates to: HNLLSKEMCQSKTFGGLHTSRNI*LLSSMP
Trigger: GGGCATCGAAGACAGCAAGCATATATTCCTACTAGT...GTGTAAACCTCCAAATGTTTTGGATTGACACATTTCCTTACTAAGCAGGTTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp TTTGCTCCCATAAGTCACCTGTCTATAGAGTTACTACATAAGAAGATACATGACCCCTTATGGAATAACTaGTGGGTTTACCATGTGCTG +
Preference number: 4 (lower is better)
Translates to: FAPISHLSIELLHKKIHDPLWNN*WVYHVL
Trigger: CAGCACATGGTAAACCCACCAGTTATTCCATAAGGG...GTCATGTATCTTCTTATGTAGTAACTCTATAGACAGGTGACTTATGGGAGCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp CATCATGAGTCGATGAGCACTTGCATTTCCTCTCATTATCTACTCAAGTCATGCATGAGAAAGCGTGAATaGATTACTGGTAACACTAGT +
Preference number: 4 (lower is better)
Translates to: HHESMSTCISSHYLLKSCMRKRE*ITGNTS
Trigger: ACTAGTGTTACCAGTAATCCATTCACGCTTTCTCAT...GCATGACTTGAGTAGATAATGAGAGGAAATGCAAGTGCTCATCGACTCATGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp CACAACCTGCTTAGTAAGGAAATGTGTCAATCCAAAACATTTGGAGGTTTACACATGTGGAGGGAAGATTaGTTTGTACTGAGTCTGATG +
Preference number: 4 (lower is better)
Translates to: HNLLSKEMCQSKTFGGLHMWRED*FVLSLM
Trigger: CATCAGACTCAGTACAAACCAATCTTCCCTCCACAT...GTGTAAACCTCCAAATGTTTTGGATTGACACATTTCCTTACTAAGCAGGTTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp CACAACCTGCTTAGTAAGGAAATGTGTCAATCCAAAACATTTGGAGGTTTACACCTGGCTGAGTTTTGTTaGACTCAATGGAAATCCAGT +
Preference number: 4 (lower is better)
Translates to: HNLLSKEMCQSKTFGGLHLAEFC*TQWKSS
Trigger: ACTGGATTTCCATTGAGTCCAACAAAACTCAGCCAG...GTGTAAACCTCCAAATGTTTTGGATTGACACATTTCCTTACTAAGCAGGTTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp TTGCATTTCCTCTCATTATCTACTCAAGTCATGCCTACTGCACCTCTAAACATTTATATGGATACTGGCTaGGTTTTGTTGGACTCAATG +
Preference number: 4 (lower is better)
Translates to: LHFLSLSTQVMPTAPLNIYMDTG*VLLDSM
Trigger: CATTGAGTCCAACAAAACTCAGCCAGTATCCATATA...AATGTTTAGAGGTGCAGTAGGCATGACTTGAGTAGATAATGAGAGGAAATGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp TTTGCTCCCATAAGTCACCTGTCTATAGAGTTACTACATAAGAAGATACATGACGTTGGTTTGCAACATTaGAGGAAGTATGGACAGTTC +
Preference number: 4 (lower is better)
Translates to: FAPISHLSIELLHKKIHDVGLQH*RKYGQF
Trigger: GAACTGTCCATACTTCCTGCAATGTTGCAAACCAAC...GTCATGTATCTTCTTATGTAGTAACTCTATAGACAGGTGACTTATGGGAGCAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp TTTGCTCCCATAAGTCACCTGTCTATAGAGTTACTACATAAGAAGATACATGACGTAGGAATATATGCTTaGTGTCTTCGATGCCCAAAG +
Preference number: 4 (lower is better)
Translates to: FAPISHLSIELLHKKIHDVGIYA*CLRCPK
Trigger: CTTTGGGCATCGAAGACAGCAAGCATATATTCCTAC...GTCATGTATCTTCTTATGTAGTAACTCTATAGACAGGTGACTTATGGGAGCAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp AGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAACAACATAATATTCTCTaGTTTGAGGTCAGCATGAAT +
Preference number: 4 (lower is better)
Translates to: RAKSRQRFAHAKDTCKCKQHNIL*FEVSMN
Trigger: ATTCATGCTGACCTCAAACCAGAGAATATTATGTTG...TTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp ATTACAACAACATTAAGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACTATTGTCTACCCTTATaGAATAACTGGTGGGTTTAC +
Preference number: 4 (lower is better)
Translates to: ITTTLRAKSRQRFAHAKDYCLPL*NNWWVY
Trigger: GTAAACCCACCAGTTATTCCATAAGGGTAGACAATA...GTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCTTAATGTTGTTGTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTAGCTGATAATGTGATCTaGTTGGTTAGAAGAGGCGGT +
Preference number: 4 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLADNVI*LVRRGG
Trigger: ACCGCCTCTTCTAACCAACCAGATCACATTATCAGC...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR TCA 90 bp CACAACCTGCTTAGTAAGGAAATGTGTCAATCCAAAACATTTGGAGGTTTACACCGTGCATACGAAGGGTaGTTCTTCAAAATTTTAATG +
Preference number: 4 (lower is better)
Translates to: HNLLSKEMCQSKTFGGLHRAYEG*FFKILM
Trigger: CATTAAAATTTTGAAGAATCACCCTTCGTATGCACG...GTGTAAACCTCCAAATGTTTTGGATTGACACATTTCCTTACTAAGCAGGTTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTAAAGCACTACCTTTCGTaGAAGGATGAGAATTGCCAA +
Preference number: 4 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLKHYLS*KDENCQ
Trigger: TTGGCAATTCTCATCCTTCCACGAAAGGTAGTGCTT...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp TTTGCTCCCATAAGTCACCTGTCTATAGAGTTACTACATAAGAAGATACATGACTCTTTGATACATGACTaGCCGATCCAAAGTCTATCA +
Preference number: 4 (lower is better)
Translates to: FAPISHLSIELLHKKIHDSLIHD*PIQSLS
Trigger: TGATAGACTTTGGATCGGCCAGTCATGTATCAAAGA...GTCATGTATCTTCTTATGTAGTAACTCTATAGACAGGTGACTTATGGGAGCAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp ATTACAACAACATTAAGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACATATTCAAAGTGCTTTaGCAAGCTTCACAATCTAGA +
Preference number: 4 (lower is better)
Translates to: ITTTLRAKSRQRFAHAKDIFKVL*QASQSR
Trigger: TCTAGATTGTGAAGCTTGCCAAAGCACTTTGAATAT...GTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCTTAATGTTGTTGTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp CACAACCTGCTTAGTAAGGAAATGTGTCAATCCAAAACATTTGGAGGTTTACACTGCAATGTAAGAATGTaGAGGGAAGATTGGTTTGTA +
Preference number: 4 (lower is better)
Translates to: HNLLSKEMCQSKTFGGLHCNVRM*REDWFV
Trigger: TACAAACCAATCTTCCCTCCACATTCTTACATTGCA...GTGTAAACCTCCAAATGTTTTGGATTGACACATTTCCTTACTAAGCAGGTTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
3UTR CAA 72 bp ACATCCATAAAAGTTTCCCCAGTCCTTATTGTAATATaGCACAGTGCAATTGCTACATGGCAAACTAGTGTA +
Preference number: 4 (lower is better)
Translates to: TSIKVSPVLIVI*HSAIATWQTSV
Trigger: TACACTAGTTTGCCATGTAGCAATTGCACTGTGCAATATTACAATAAGGACTGGGGAAACTTTTATGGATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR GCA 90 bp TTTGCTCCCATAAGTCACCTGTCTATAGAGTTACTACATAAGAAGATACATGACGATCAATATTCAAAGTaGTTTGGCAAGCTTCACAAT +
Preference number: 4 (lower is better)
Translates to: FAPISHLSIELLHKKIHDDQYSK*FGKLHN
Trigger: ATTGTGAAGCTTGCCAAAGCACTTTGAATATTGATC...GTCATGTATCTTCTTATGTAGTAACTCTATAGACAGGTGACTTATGGGAGCAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CCA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTACTTCATATTAACGAATaGGTGGTTCAGAGTCTCAAT +
Preference number: 4 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLLHINE*VVQSLN
Trigger: ATTGAGACTCTGAACCACCCATTCGTTAATATGAAG...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS GCA 90 bp ATGCTGAACCTGGCTCAGGTTCAAATGCTGCTGAGGGAACGCTGCTaGGGGCTTCTGCTGACGAGCGCCCAGGGCAGGAGGCTGGTGCAG +
Preference number: 5 (lower is better)
Translates to: MLNLAQVQMLLRERC*GLLLTSAQGRRLVQ
Trigger: CTGCACCAGCCTCCTGCCCTGGGCGCTCGTCAGCAGAAGCCCGCAGCAGCGTTCCCTCAGCAGCATTTGAACCTGAGCCAGGTTCAGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 90 bp CCCCACCGGTGGCTCCACAGCAGTGCCAACAGCTGGCTTGGCTTCTaGGCCAGCACAGGTCCCCAGCTCTGTGTTCTGATGAGCATCCTC +
Preference number: 5 (lower is better)
Translates to: PHRWLHSSANSWLGF*ASTGPQLCVLMSIL
Trigger: GAGGATGCTCATCAGAACACAGAGCTGGGGACCTGTGCTGGCCCAGAAGCCAAGCCAGCTGTTGGCACTGCTGTGGAGCCACCGGTGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 90 bp GAAATGCTGAACCTGGCTCAGGTTCAAATGCTGCTGAGGGAACGCTaGTGCGGGCTTCTGCTGACGAGCGCCCAGGGCAGGAGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: EMLNLAQVQMLLRER*CGLLLTSAQGRRLV
Trigger: CACCAGCCTCCTGCCCTGGGCGCTCGTCAGCAGAAGCCCGCAGCAGCGTTCCCTCAGCAGCATTTGAACCTGAGCCAGGTTCAGCATTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 90 bp GGATGCTGTAACATAGGTCTTGAGGTACACGGAGAGGCTAGGAGGTaGGCCACGGGTGCAGCACTACTGAGGGAGGCTGATGATGGGTAT +
Preference number: 5 (lower is better)
Translates to: GCCNIGLEVHGEARR*ATGAALLREADDGY
Trigger: ATACCCATCATCAGCCTCCCTCAGTAGTGCTGCACCCGTGGCCCACCTCCTAGCCTCTCCGTGTACCTCAAGACCTATGTTACAGCATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 90 bp AAGCATCTCCACAACCGAACTGTGCAGTCCCCGCCTGCAGAGGTATaGCATGGTGCACAACAGAGTGAGCAGATGTGGTTAACGCCTGAC +
Preference number: 5 (lower is better)
Translates to: KHLHNRTVQSPPAEV*HGAQQSEQMWLTPD
Trigger: GTCAGGCGTTAACCACATCTGCTCACTCTGTTGTGCACCATGGCATACCTCTGCAGGCGGGGACTGCACAGTTCGGTTGTGGAGATGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 90 bp GCAGGAGCCATGGGTGTTACCTGCTGCCAGGCAGGTATTAGCATCTaGTGTGTTCGACCAGACCATGTCTGCTGTGAAAGGACTCCAGGT +
Preference number: 5 (lower is better)
Translates to: AGAMGVTCCQAGISI*CVRPDHVCCERTPG
Trigger: ACCTGGAGTCCTTTCACAGCAGACATGGTCTGGTCGAACACAGCAGATGCTAATACCTGCCTGGCAGCAGGTAACACCCATGGCTCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 90 bp GGCAGGCTGGCCTTTTCTCAATGGCTGGCATGTAGAATCCGTGTTTaGCATGTGCTCGTCAACACTCAGTCCACTTTCTCTCCCCACCGG +
Preference number: 5 (lower is better)
Translates to: GRLAFSQWLACRIRV*HVLVNTQSTFSPHR
Trigger: CCGGTGGGGAGAGAAAGTGGACTGAGTGTTGACGAGCACATGGCAAACACGGATTCTACATGCCAGCCATTGAGAAAAGGCCAGCCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS-3UTR CAA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGAGCACCGGCAGTGTCTTaGACAACAATGGCACCTGCC +
Preference number: 5 (lower is better)
Translates to: VLNTARSAQARRAHIMSRAPAVS*TTMAPA
Trigger: GGCAGGTGCCATTGTTGTCAAAGACACTGCCGGTGC...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS GCA 90 bp TCAGAAGTTAGTGTTGCGGCAGCAGGAGCCATGGGTGTTACCTGCTaGCAGGCAGGTATTAGCATCTGCTGTGTTCGACCAGACCATGTC +
Preference number: 5 (lower is better)
Translates to: SEVSVAAAGAMGVTC*QAGISICCVRPDHV
Trigger: GACATGGTCTGGTCGAACACAGCAGATGCTAATACCTGCCTGGCAGCAGGTAACACCCATGGCTCCTGCTGCCGCAACACTAACTTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 90 bp TGGCCTTTTCTCAATGGCTGGCATGTAGAATCCGTGTTTGCCATGTaGTCGTCAACACTCAGTCCACTTTCTCTCCCCACCGGTGGCTCC +
Preference number: 5 (lower is better)
Translates to: WPFLNGWHVESVFAM*SSTLSPLSLPTGGS
Trigger: GGAGCCACCGGTGGGGAGAGAAAGTGGACTGAGTGTTGACGAGCACATGGCAAACACGGATTCTACATGCCAGCCATTGAGAAAAGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 90 bp ACTGATAGTCGCCTTCCCCGCTGGTGCAGTTCTGCTTCGATCCTGTaGTCGCTGTCACAACTGTCACTGGGTTTCCCATGTTGGTTTGCA +
Preference number: 5 (lower is better)
Translates to: TDSRLPRWCSSASIL*SLSQLSLGFPCWFA
Trigger: TGCAAACCAACATGGGAAACCCAGTGACAGTTGTGACAGCGACCACAGGATCGAAGCAGAACTGCACCAGCGGGGAAGGCGACTATCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 90 bp AACCAGCCATGCCTTCAGAAGTTAGTGTTGCGGCAGCAGGAGCCATaGGTGTTACCTGCTGCCAGGCAGGTATTAGCATCTGCTGTGTTC +
Preference number: 5 (lower is better)
Translates to: NQPCLQKLVLRQQEP*VLPAARQVLASAVF
Trigger: GAACACAGCAGATGCTAATACCTGCCTGGCAGCAGGTAACACCCATGGCTCCTGCTGCCGCAACACTAACTTCTGAAGGCATGGCTGGTT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS-3UTR CAA 90 bp GTGTTAAATACTGCACGGTCTGCCCAAGCAAGGAGGGCGCACATCATGAGTCGATATGCCCACTGGGACTaGGTGAACTATGCCACTGGG +
Preference number: 5 (lower is better)
Translates to: VLNTARSAQARRAHIMSRYAHWD*VNYATG
Trigger: CCCAGTGGCATAGTTCACCAAGTCCCAGTGGGCATA...TCGACTCATGATGTGCGCCCTCCTTGCTTGGGCAGACCGTGCAGTATTTAACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS TCA 90 bp GCAGGAAGTATGGACAGTTCATCAACAATCTGCATCGCGCCGCTGTaGTTCTCCAACTCCTCACTCTTGCGCTTTAACCCGCATCGCTGG +
Preference number: 5 (lower is better)
Translates to: AGSMDSSSTICIAPL*FSNSSLLRFNPHRW
Trigger: CCAGCGATGCGGGTTAAAGCGCAAGAGTGAGGAGTTGGAGAATCACAGCGGCGCGATGCAGATTGTTGATGAACTGTCCATACTTCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 90 bp GTGGAATCATTTTCCCCCAGTCTCCAAGCCTCTGAGAACCAGCCATaGCTTCAGAAGTTAGTGTTGCGGCAGCAGGAGCCATGGGTGTTA +
Preference number: 5 (lower is better)
Translates to: VESFSPSLQASENQP*LQKLVLRQQEPWVL
Trigger: TAACACCCATGGCTCCTGCTGCCGCAACACTAACTTCTGAAGGCATGGCTGGTTCTCAGAGGCTTGGAGACTGGGGGAAAATGATTCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 90 bp ATCACACTCACGGCAGGACTCGGGGAGTCGGCAATGATGATGGTTTaGCGCTGTTTGTCTGAGACTGAAGAATCCTGTCTGACAGACGCT +
Preference number: 5 (lower is better)
Translates to: ITLTAGLGESAMMMV*RCLSETEESCLTDA
Trigger: AGCGTCTGTCAGACAGGATTCTTCAGTCTCAGACAAACAGCGGCAAACCATCATCATTGCCGACTCCCCGAGTCCTGCCGTGAGTGTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 90 bp CACAAAACTGTTCTCTGCAAATGGACTGTCGTGCCCCGAGGAGTCTaGTGTTGGAGAGCCATCCACAGTCTCACACCCGCTTTCTTGTTC +
Preference number: 5 (lower is better)
Translates to: HKTVLCKWTVVPRGV*CWRAIHSLTPAFLF
Trigger: GAACAAGAAAGCGGGTGTGAGACTGTGGATGGCTCTCCAACATCAGACTCCTCGGGGCACGACAGTCCATTTGCAGAGAACAGTTTTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 90 bp ACAGATAATCAGGGTCTGATGAAAAGCATCTCCACAACCGAACTGTaGAGTCCCCGCCTGCAGAGGTATGCCATGGTGCACAACAGAGTG +
Preference number: 5 (lower is better)
Translates to: TDNQGLMKSISTTEL*SPRLQRYAMVHNRV
Trigger: CACTCTGTTGTGCACCATGGCATACCTCTGCAGGCGGGGACTGCACAGTTCGGTTGTGGAGATGCTTTTCATCAGACCCTGATTATCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 90 bp ACTGAGTCTGATGAATGGTTGGGGATGGTAACAGGCGGGGGTTTATaGCCACTGGGACTTGGTGAACTATGCCACTGGGATGGGAGATAT +
Preference number: 5 (lower is better)
Translates to: TESDEWLGMVTGGGL*PLGLGELCHWDGRY
Trigger: ATATCTCCCATCCCAGTGGCATAGTTCACCAAGTCCCAGTGGGCATAAACCCCCGCCTGTTACCATCCCCAACCATTCATCAGACTCAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 90 bp AGGCTGTCCTCCGAGGTGTGTACTTCCAGCCAGATGGGCATGTACTaGTGTGTGGTTAGGACTTCCATGAGAAAGCGTGAATGGATTACT +
Preference number: 5 (lower is better)
Translates to: RLSSEVCTSSQMGMY*CVVRTSMRKREWIT
Trigger: AGTAATCCATTCACGCTTTCTCATGGAAGTCCTAACCACACAGCAGTACATGCCCATCTGGCTGGAAGTACACACCTCGGAGGACAGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 90 bp GGTGCAGTTCTGCTTCGATCCTGTGGTCGCTGTCACAACTGTCACTaGGTTTCCCATGTTGGTTTGCAACATTGCAGGAAGTATGGACAG +
Preference number: 5 (lower is better)
Translates to: GAVLLRSCGRCHNCH*VSHVGLQHCRKYGQ
Trigger: CTGTCCATACTTCCTGCAATGTTGCAAACCAACATGGGAAACCCAGTGACAGTTGTGACAGCGACCACAGGATCGAAGCAGAACTGCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS-3UTR CAA 90 bp GTAAAAGCAACTTCATTTAAACATCACCACCATCACCACCAAGGGGAGAGGGGGGAGTCTGATGAATGGTaGGGGATGGTAACAGGCGGG +
Preference number: 5 (lower is better)
Translates to: VKATSFKHHHHHHQGERGESDEW*GMVTGG
Trigger: CCCGCCTGTTACCATCCCCAACCATTCATCAGACTC...CCCCCTCTCCCCTTGGTGGTGATGGTGGTGATGTTTAAATGAAGTTGCTTTTAC
51% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS TCA 90 bp ATCCTGTCTGACAGACGCTTCACGGCAAGTTCCGGCCTCTCCTTCTaGGGTATGATTGTCCTGTGTGTCTACACAACTTACTTCCTCAAC +
Preference number: 5 (lower is better)
Translates to: ILSDRRFTASSGLSF*GMIVLCVYTTYFLN
Trigger: GTTGAGGAAGTAAGTTGTGTAGACACACAGGACAATCATACCTCAGAAGGAGAGGCCGGAACTTGCCGTGAAGCGTCTGTCAGACAGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 90 bp CGCTGTCACAACTGTCACTGGGTTTCCCATGTTGGTTTGCAACATTaGAGGAAGTATGGACAGTTCATCAACAATCTGCATCGCGCCGCT +
Preference number: 5 (lower is better)
Translates to: RCHNCHWVSHVGLQH*RKYGQFINNLHRAA
Trigger: AGCGGCGCGATGCAGATTGTTGATGAACTGTCCATACTTCCTGCAATGTTGCAAACCAACATGGGAAACCCAGTGACAGTTGTGACAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS-3UTR CAA 90 bp ATTACAACAACATTAAGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACGTGCCAACAGCTGGCTaGGCTTCTGGGCCAGCACAG +
Preference number: 5 (lower is better)
Translates to: ITTTLRAKSRQRFAHAKDVPTAG*ASGPAQ
Trigger: CTGTGCTGGCCCAGAAGCCAAGCCAGCTGTTGGCAC...GTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCTTAATGTTGTTGTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS CCA 90 bp CTGTCACTGGGTTTCCCATGTTGGTTTGCAACATTGCAGGAAGTATaGACAGTTCATCAACAATCTGCATCGCGCCGCTGTGATTCTCCA +
Preference number: 5 (lower is better)
Translates to: LSLGFPCWFATLQEV*TVHQQSASRRCDSP
Trigger: TGGAGAATCACAGCGGCGCGATGCAGATTGTTGATGAACTGTCCATACTTCCTGCAATGTTGCAAACCAACATGGGAAACCCAGTGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 90 bp GGTCAGCATGAATTAAACCAAGACTTTTTAATTTCTTCAGTGCAGTaGCCACTTGCTGAAGAACAGGCCGGATCACCTTCAGGGGCAGGG +
Preference number: 5 (lower is better)
Translates to: GQHELNQDFLISSVQ*PLAEEQAGSPSGAG
Trigger: CCCTGCCCCTGAAGGTGATCCGGCCTGTTCTTCAGCAAGTGGCCACTGCACTGAAGAAATTAAAAAGTCTTGGTTTAATTCATGCTGACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 90 bp CAGCTGGGGCCTGAGTTACAAGCGGAACTGTATTGTCTACCCTTATaGAATAACTGGTGGGTTTACCATGTGCTGCAGGAATACCTTGGA +
Preference number: 5 (lower is better)
Translates to: QLGPELQAELYCLPL*NNWWVYHVLQEYLG
Trigger: TCCAAGGTATTCCTGCAGCACATGGTAAACCCACCAGTTATTCCATAAGGGTAGACAATACAGTTCCGCTTGTAACTCAGGCCCCAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 90 bp TGTAAGAATGTGGAGGGAAGATTGGTTTGTACTGAGTCTGATGAATaGTTGGGGATGGTAACAGGCGGGGGTTTATGCCCACTGGGACTT +
Preference number: 5 (lower is better)
Translates to: CKNVEGRLVCTESDE*LGMVTGGGLCPLGL
Trigger: AAGTCCCAGTGGGCATAAACCCCCGCCTGTTACCATCCCCAACCATTCATCAGACTCAGTACAAACCAATCTTCCCTCCACATTCTTACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS-3UTR CAA 90 bp AGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAACAGTGCAGTGGCCACTaGCTGAAGAACAGGCCGGAT +
Preference number: 5 (lower is better)
Translates to: RAKSRQRFAHAKDTCKCKQCSGH*LKNRPD
Trigger: ATCCGGCCTGTTCTTCAGCAAGTGGCCACTGCACTG...TTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CAA 90 bp AGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAACCGAGGAGTCTGATGTaGGAGAGCCATCCACAGTCT +
Preference number: 5 (lower is better)
Translates to: RAKSRQRFAHAKDTCKCKPRSLM*ESHPQS
Trigger: AGACTGTGGATGGCTCTCCAACATCAGACTCCTCGG...TTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS GCA 90 bp CAAAGTTATACTCATCAGCGTTCTCTGTACTCAGCCTTGCCAAGATaGTCACTTCTATCTGCCCTTGACGTGCATACGAAGGGTGATTCT +
Preference number: 5 (lower is better)
Translates to: QSYTHQRSLYSALPR*SLLSALDVHTKGDS
Trigger: AGAATCACCCTTCGTATGCACGTCAAGGGCAGATAGAAGTGAGCATCTTGGCAAGGCTGAGTACAGAGAACGCTGATGAGTATAACTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS-3UTR CAA 90 bp ATTACAACAACATTAAGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACTCCAACTCCTCACTCTaGCGCTTTAACCCGCATCGC +
Preference number: 5 (lower is better)
Translates to: ITTTLRAKSRQRFAHAKDSNSSL*RFNPHR
Trigger: GCGATGCGGGTTAAAGCGCAAGAGTGAGGAGTTGGA...GTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCTTAATGTTGTTGTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS TCA 90 bp CTGGCTGAGTTTTGTTGGACTCAATGGAAATCCAGTATACGCAGGTaGTGCTGCAATGTAAGAATGTGGAGGGAAGATTGGTTTGTACTG +
Preference number: 5 (lower is better)
Translates to: LAEFCWTQWKSSIRR*CCNVRMWREDWFVL
Trigger: CAGTACAAACCAATCTTCCCTCCACATTCTTACATTGCAGCATCACCTGCGTATACTGGATTTCCATTGAGTCCAACAAAACTCAGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS-3UTR CAA 90 bp GCCACTTTCCTCCCTGTCGTGACACAATCAATCCGTGTACTTGGTGTCTCTGAAGAGATTGAAGATACGTaGAGCAAACAGTCTTTGATA +
Preference number: 5 (lower is better)
Translates to: ATFLPVVTQSIRVLGVSEEIEDT*SKQSLI
Trigger: TATCAAAGACTGTTTGCTCAACGTATCTTCAATCTC...TTCAGAGACACCAAGTACACGGATTGATTGTGTCACGACAGGGAGGAAAGTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS CCA 90 bp TCAGGACTGCTGAGTGAACACATCCGATCAATATTCAAAGTGCTTTaGCAAGCTTCACAATCTAGACTACCTTTACACTCTCGGAGTGAA +
Preference number: 5 (lower is better)
Translates to: SGLLSEHIRSIFKVL*QASQSRLPLHSRSE
Trigger: TTCACTCCGAGAGTGTAAAGGTAGTCTAGATTGTGAAGCTTGCCAAAGCACTTTGAATATTGATCGGATGTGTTCACTCAGCAGTCCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS-3UTR CAA 90 bp CACAACCTGCTTAGTAAGGAAATGTGTCAATCCAAAACATTTGGAGGTTTACACCCTCTCTTCCAGCATTaGACAACCTGGCCAAAAGTG +
Preference number: 5 (lower is better)
Translates to: HNLLSKEMCQSKTFGGLHPLFQH*TTWPKV
Trigger: CACTTTTGGCCAGGTTGTCAAATGCTGGAAGAGAGG...GTGTAAACCTCCAAATGTTTTGGATTGACACATTTCCTTACTAAGCAGGTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CAA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTATGCTGCAGGAATACCTaGGATAGCTGGGGGACAGAT +
Preference number: 5 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLCCRNT*DSWGTD
Trigger: ATCTGTCCCCCAGCTATCCAAGGTATTCCTGCAGCA...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CAA 90 bp CCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAAGAACAGTAGGAATATATGCTaGCTGTCTTCGATGCCCAAA +
Preference number: 5 (lower is better)
Translates to: PSLGNVLPMQKTHANVKNSRNIC*LSSMPK
Trigger: TTTGGGCATCGAAGACAGCAAGCATATATTCCTACT...GTTCTTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS GCA 90 bp GTATCTTTGTCTGGAAAGCACTACCTTTCGTGGAAGGATGAGAATTaGCAAAGTTTCTACCATTCACATGGATCTGAGGATAGGTTCTTT +
Preference number: 5 (lower is better)
Translates to: VSLSGKHYLSWKDEN*QSFYHSHGSEDRFF
Trigger: AAAGAACCTATCCTCAGATCCATGTGAATGGTAGAAACTTTGGCAATTCTCATCCTTCCACGAAAGGTAGTGCTTTCCAGACAAAGATAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS-3UTR CAA 90 bp TTGCATTTCCTCTCATTATCTACTCAAGTCATGCCTACTGCACCTCTAAACATTTTGAGCAAACAGTCTTaGATACATGACTGGCCGATC +
Preference number: 5 (lower is better)
Translates to: LHFLSLSTQVMPTAPLNILSKQS*IHDWPI
Trigger: GATCGGCCAGTCATGTATCAAAGACTGTTTGCTCAA...AATGTTTAGAGGTGCAGTAGGCATGACTTGAGTAGATAATGAGAGGAAATGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CAA 90 bp CATCATGAGTCGATGAGCACTTGCATTTCCTCTCATTATCTACTCAAGTCATGCGCTGAATGTGGGATATaGGTGTTCTGCAATGAATTA +
Preference number: 5 (lower is better)
Translates to: HHESMSTCISSHYLLKSCAECGI*VFCNEL
Trigger: TAATTCATTGCAGAACACCAATATCCCACATTCAGC...GCATGACTTGAGTAGATAATGAGAGGAAATGCAAGTGCTCATCGACTCATGATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CAA 90 bp TTTGCTCCCATAAGTCACCTGTCTATAGAGTTACTACATAAGAAGATACATGACATGGTTTGCCGCTGTTaGTCTGAGACTGAAGAATCC +
Preference number: 5 (lower is better)
Translates to: FAPISHLSIELLHKKIHDMVCRC*SETEES
Trigger: GGATTCTTCAGTCTCAGACAAACAGCGGCAAACCAT...GTCATGTATCTTCTTATGTAGTAACTCTATAGACAGGTGACTTATGGGAGCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS GCA 90 bp ATGAGAAAGCGTGAATGGATTACTGGTAACACTAGTAGGAATATATaGTTGCTGTCTTCGATGCCCAAAGTTTCCATTCCATTCTTGATG +
Preference number: 5 (lower is better)
Translates to: MRKREWITGNTSRNI*LLSSMPKVSIPFLM
Trigger: CATCAAGAATGGAATGGAAACTTTGGGCATCGAAGACAGCAAGCATATATTCCTACTAGTGTTACCAGTAATCCATTCACGCTTTCTCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS-3UTR CAA 90 bp AGAGCCAAGTCTAGGCAACGTTTTGCCCATGCAAAAGACACATGCAAATGTAAACACTACAAAAGGCACTaGACTGAGTTTGATAAACAT +
Preference number: 5 (lower is better)
Translates to: RAKSRQRFAHAKDTCKCKHYKRH*TEFDKH
Trigger: ATGTTTATCAAACTCAGTCAAGTGCCTTTTGTAGTG...TTTACATTTGCATGTGTCTTTTGCATGGGCAAAACGTTGCCTAGACTTGGCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS-3UTR CAA 90 bp CACAACCTGCTTAGTAAGGAAATGTGTCAATCCAAAACATTTGGAGGTTTACACATATCGTCCAGACTGTaGAATATGTACTTTCTGGCC +
Preference number: 5 (lower is better)
Translates to: HNLLSKEMCQSKTFGGLHISSRL*NMYFLA
Trigger: GGCCAGAAAGTACATATTCAACAGTCTGGACGATAT...GTGTAAACCTCCAAATGTTTTGGATTGACACATTTCCTTACTAAGCAGGTTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS TCA 90 bp TGTGGTTATTTGTTTCACATGAACTCGGAGACTTACAAATATCCATaGTATGAAAACAGGACTTTACATGGTTGCTGTGAGGAAAATCTA +
Preference number: 5 (lower is better)
Translates to: CGYLFHMNSETYKYP*YENRTLHGCCEENL
Trigger: TAGATTTTCCTCACAGCAACCATGTAAAGTCCTGTTTTCATATCATGGATATTTGTAAGTCTCCGAGTTCATGTGAAACAAATAACCACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS-3UTR CAA 90 bp TTCCTACACCTTGCAGTGTATGATTTAACTTTTACAGAACACAAGCCAAGTTTATTTTACTGTGGTTATTaGTTTCACATGAACTCGGAG +
Preference number: 5 (lower is better)
Translates to: FLHLAVYDLTFTEHKPSLFYCGY*FHMNSE
Trigger: CTCCGAGTTCATGTGAAACAAATAACCACAGTAAAA...TAAACTTGGCTTGTGTTCTGTAAAAGTTAAATCATACACTGCAAGGTGTAGGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028600.14
CDS CCA 72 bp TCTCCCCACCGGTGGCTCCACAGCAGTGCCAACAGCTaGCTTGGCTTCTGGGCCAGCACAGGTCCCCAGCTC +
Preference number: 6 (lower is better)
Translates to: SPHRWLHSSANS*LGFWASTGPQL
Trigger: GAGCTGGGGACCTGTGCTGGCCCAGAAGCCAAGCCAGCTGTTGGCACTGCTGTGGAGCCACCGGTGGGGAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp CTGGCTCAGGTTCAAATGCTGCTGAGGGAACGCTGCTaGGGGCTTCTGCTGACGAGCGCCCAGGGCAGGAGG +
Preference number: 6 (lower is better)
Translates to: LAQVQMLLRERC*GLLLTSAQGRR
Trigger: CCTCCTGCCCTGGGCGCTCGTCAGCAGAAGCCCGCAGCAGCGTTCCCTCAGCAGCATTTGAACCTGAGCCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp AACCTGGCTCAGGTTCAAATGCTGCTGAGGGAACGCTaGTGCGGGCTTCTGCTGACGAGCGCCCAGGGCAGG +
Preference number: 6 (lower is better)
Translates to: NLAQVQMLLRER*CGLLLTSAQGR
Trigger: CCTGCCCTGGGCGCTCGTCAGCAGAAGCCCGCAGCAGCGTTCCCTCAGCAGCATTTGAACCTGAGCCAGGTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 72 bp GTTCGGTCTCTTGCAAGGGGACGGGCTGGACTGCCCTaGGGAGCTGGTGCTCAGAGTGCTATCAGGACTGCT +
Preference number: 6 (lower is better)
Translates to: VRSLARGRAGLP*GAGAQSAIRTA
Trigger: AGCAGTCCTGATAGCACTCTGAGCACCAGCTCCTCAGGGCAGTCCAGCCCGTCCCCTTGCAAGAGACCGAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 72 bp TGGCTCCACAGCAGTGCCAACAGCTGGCTTGGCTTCTaGGCCAGCACAGGTCCCCAGCTCTGTGTTCTGATG +
Preference number: 6 (lower is better)
Translates to: WLHSSANSWLGF*ASTGPQLCVLM
Trigger: CATCAGAACACAGAGCTGGGGACCTGTGCTGGCCCAGAAGCCAAGCCAGCTGTTGGCACTGCTGTGGAGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 72 bp CGCCTTCCCCGCTGGTGCAGTTCTGCTTCGATCCTGTaGTCGCTGTCACAACTGTCACTGGGTTTCCCATGT +
Preference number: 6 (lower is better)
Translates to: RLPRWCSSASIL*SLSQLSLGFPC
Trigger: ACATGGGAAACCCAGTGACAGTTGTGACAGCGACCACAGGATCGAAGCAGAACTGCACCAGCGGGGAAGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 72 bp AACATAGGTCTTGAGGTACACGGAGAGGCTAGGAGGTaGGCCACGGGTGCAGCACTACTGAGGGAGGCTGAT +
Preference number: 6 (lower is better)
Translates to: NIGLEVHGEARR*ATGAALLREAD
Trigger: ATCAGCCTCCCTCAGTAGTGCTGCACCCGTGGCCCACCTCCTAGCCTCTCCGTGTACCTCAAGACCTATGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 72 bp GTTCTCTGCAAATGGACTGTCGTGCCCCGAGGAGTCTaGTGTTGGAGAGCCATCCACAGTCTCACACCCGCT +
Preference number: 6 (lower is better)
Translates to: VLCKWTVVPRGV*CWRAIHSLTPA
Trigger: AGCGGGTGTGAGACTGTGGATGGCTCTCCAACATCAGACTCCTCGGGGCACGACAGTCCATTTGCAGAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp CAGGGTCTGATGAAAAGCATCTCCACAACCGAACTGTaGAGTCCCCGCCTGCAGAGGTATGCCATGGTGCAC +
Preference number: 6 (lower is better)
Translates to: QGLMKSISTTEL*SPRLQRYAMVH
Trigger: GTGCACCATGGCATACCTCTGCAGGCGGGGACTGCACAGTTCGGTTGTGGAGATGCTTTTCATCAGACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp AGTGTTGCGGCAGCAGGAGCCATGGGTGTTACCTGCTaGCAGGCAGGTATTAGCATCTGCTGTGTTCGACCA +
Preference number: 6 (lower is better)
Translates to: SVAAAGAMGVTC*QAGISICCVRP
Trigger: TGGTCGAACACAGCAGATGCTAATACCTGCCTGGCAGCAGGTAACACCCATGGCTCCTGCTGCCGCAACACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp TTTTCCCCCAGTCTCCAAGCCTCTGAGAACCAGCCATaGCTTCAGAAGTTAGTGTTGCGGCAGCAGGAGCCA +
Preference number: 6 (lower is better)
Translates to: FSPSLQASENQP*LQKLVLRQQEP
Trigger: TGGCTCCTGCTGCCGCAACACTAACTTCTGAAGGCATGGCTGGTTCTCAGAGGCTTGGAGACTGGGGGAAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp TTTCTTGTTCATCATCTGACATGCTGTTCGGTCTCTTaGAAGGGGACGGGCTGGACTGCCCTGAGGAGCTGG +
Preference number: 6 (lower is better)
Translates to: FLVHHLTCCSVS*KGTGWTALRSW
Trigger: CCAGCTCCTCAGGGCAGTCCAGCCCGTCCCCTTGCAAGAGACCGAACAGCATGTCAGATGATGAACAAGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 72 bp AAGGACTCCAGGTCGGATCTGCAGAGGCTGCACAGCTaGGGCCTGAGTTACAAGCGGAACTGTATTGTCTAC +
Preference number: 6 (lower is better)
Translates to: KDSRSDLQRLHS*GLSYKRNCIVY
Trigger: GTAGACAATACAGTTCCGCTTGTAACTCAGGCCCCAGCTGTGCAGCCTCTGCAGATCCGACCTGGAGTCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 72 bp AGCTTTCCGGGGGCAGGCTGGCCTTTTCTCAATGGCTaGCATGTAGAATCCGTGTTTGCCATGTGCTCGTCA +
Preference number: 6 (lower is better)
Translates to: SFPGAGWPFLNG*HVESVFAMCSS
Trigger: TGACGAGCACATGGCAAACACGGATTCTACATGCCAGCCATTGAGAAAAGGCCAGCCTGCCCCCGGAAAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 72 bp CTTTCTTGTTCATCATCTGACATGCTGTTCGGTCTCTaGCAAGGGGACGGGCTGGACTGCCCTGAGGAGCTG +
Preference number: 6 (lower is better)
Translates to: LSCSSSDMLFGL*QGDGLDCPEEL
Trigger: CAGCTCCTCAGGGCAGTCCAGCCCGTCCCCTTGCAAGAGACCGAACAGCATGTCAGATGATGAACAAGAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 72 bp CTGCAAATGGACTGTCGTGCCCCGAGGAGTCTGATGTaGGAGAGCCATCCACAGTCTCACACCCGCTTTCTT +
Preference number: 6 (lower is better)
Translates to: LQMDCRAPRSLM*ESHPQSHTRFL
Trigger: AAGAAAGCGGGTGTGAGACTGTGGATGGCTCTCCAACATCAGACTCCTCGGGGCACGACAGTCCATTTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 90 bp ACGGCAGGACTCGGGGAGTCGGCAATGATGATGGTTTGCCGCTGTTaGTCTGAGACTGAAGAATCCTGTCTGACAGACGCTTCACGGCAA +
Preference number: 6 (lower is better)
Translates to: TAGLGESAMMMVCRC*SETEESCLTDASRQ
Trigger: TTGCCGTGAAGCGTCTGTCAGACAGGATTCTTCAGTCTCAGACAAACAGCGGCAAACCATCATCATTGCCGACTCCCCGAGTCCTGCCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp ACGGCAGGACTCGGGGAGTCGGCAATGATGATGGTTTaGCGCTGTTTGTCTGAGACTGAAGAATCCTGTCTG +
Preference number: 6 (lower is better)
Translates to: TAGLGESAMMMV*RCLSETEESCL
Trigger: CAGACAGGATTCTTCAGTCTCAGACAAACAGCGGCAAACCATCATCATTGCCGACTCCCCGAGTCCTGCCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp GATGAATGGTTGGGGATGGTAACAGGCGGGGGTTTATaGCCACTGGGACTTGGTGAACTATGCCACTGGGAT +
Preference number: 6 (lower is better)
Translates to: DEWLGMVTGGGL*PLGLGELCHWD
Trigger: ATCCCAGTGGCATAGTTCACCAAGTCCCAGTGGGCATAAACCCCCGCCTGTTACCATCCCCAACCATTCATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 72 bp TGCCTTCAGAAGTTAGTGTTGCGGCAGCAGGAGCCATaGGTGTTACCTGCTGCCAGGCAGGTATTAGCATCT +
Preference number: 6 (lower is better)
Translates to: CLQKLVLRQQEP*VLPAARQVLAS
Trigger: AGATGCTAATACCTGCCTGGCAGCAGGTAACACCCATGGCTCCTGCTGCCGCAACACTAACTTCTGAAGGCA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 72 bp TTTGCCGCTGTTTGTCTGAGACTGAAGAATCCTGTCTaGCAGACGCTTCACGGCAAGTTCCGGCCTCTCCTT +
Preference number: 6 (lower is better)
Translates to: FAAVCLRLKNPV*QTLHGKFRPLL
Trigger: AAGGAGAGGCCGGAACTTGCCGTGAAGCGTCTGTCAGACAGGATTCTTCAGTCTCAGACAAACAGCGGCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 72 bp ATCCACAGTCTCACACCCGCTTTCTTGTTCATCATCTaGCATGCTGTTCGGTCTCTTGCAAGGGGACGGGCT +
Preference number: 6 (lower is better)
Translates to: IHSLTPAFLFII*HAVRSLARGRA
Trigger: AGCCCGTCCCCTTGCAAGAGACCGAACAGCATGTCAGATGATGAACAAGAAAGCGGGTGTGAGACTGTGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp ATGGGTGTTACCTGCTGCCAGGCAGGTATTAGCATCTaGTGTGTTCGACCAGACCATGTCTGCTGTGAAAGG +
Preference number: 6 (lower is better)
Translates to: MGVTCCQAGISI*CVRPDHVCCER
Trigger: CCTTTCACAGCAGACATGGTCTGGTCGAACACAGCAGATGCTAATACCTGCCTGGCAGCAGGTAACACCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp GGCGGGGGTTTATGCCCACTGGGACTTGGTGAACTATaGCACTGGGATGGGAGATATTGTAAGTTGGATGCT +
Preference number: 6 (lower is better)
Translates to: GGGLCPLGLGEL*HWDGRYCKLDA
Trigger: AGCATCCAACTTACAATATCTCCCATCCCAGTGGCATAGTTCACCAAGTCCCAGTGGGCATAAACCCCCGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 72 bp TCCAACTCCTCACTCTTGCGCTTTAACCCGCATCGCTaGGGCCCTTCTAGGAAATGTAACCTGTTTCTCCAC +
Preference number: 6 (lower is better)
Translates to: SNSSLLRFNPHR*GPSRKCNLFLH
Trigger: GTGGAGAAACAGGTTACATTTCCTAGAAGGGCCCCAGCGATGCGGGTTAAAGCGCAAGAGTGAGGAGTTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 72 bp CTCGGGGAGTCGGCAATGATGATGGTTTGCCGCTGTTaGTCTGAGACTGAAGAATCCTGTCTGACAGACGCT +
Preference number: 6 (lower is better)
Translates to: LGESAMMMVCRC*SETEESCLTDA
Trigger: AGCGTCTGTCAGACAGGATTCTTCAGTCTCAGACAAACAGCGGCAAACCATCATCATTGCCGACTCCCCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 90 bp AACTGTTCTCTGCAAATGGACTGTCGTGCCCCGAGGAGTCTGATGTaGGAGAGCCATCCACAGTCTCACACCCGCTTTCTTGTTCATCAT +
Preference number: 6 (lower is better)
Translates to: NCSLQMDCRAPRSLM*ESHPQSHTRFLVHH
Trigger: ATGATGAACAAGAAAGCGGGTGTGAGACTGTGGATGGCTCTCCAACATCAGACTCCTCGGGGCACGACAGTCCATTTGCAGAGAACAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 72 bp ATGGACAGTTCATCAACAATCTGCATCGCGCCGCTGTaGTTCTCCAACTCCTCACTCTTGCGCTTTAACCCG +
Preference number: 6 (lower is better)
Translates to: MDSSSTICIAPL*FSNSSLLRFNP
Trigger: CGGGTTAAAGCGCAAGAGTGAGGAGTTGGAGAATCACAGCGGCGCGATGCAGATTGTTGATGAACTGTCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 72 bp CTGTGTGGAATCATTTTCCCCCAGTCTCCAAGCCTCTaGGAACCAGCCATGCCTTCAGAAGTTAGTGTTGCG +
Preference number: 6 (lower is better)
Translates to: LCGIIFPQSPSL*EPAMPSEVSVA
Trigger: CGCAACACTAACTTCTGAAGGCATGGCTGGTTCTCAGAGGCTTGGAGACTGGGGGAAAATGATTCCACACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 72 bp GGCCAGACAACATGTGCAATGCCCACGCTGATAGGCTaGGGGGCTGATAATGTGATCTGGTTGGTTAGAAGA +
Preference number: 6 (lower is better)
Translates to: GQTTCAMPTLIG*GADNVIWLVRR
Trigger: TCTTCTAACCAACCAGATCACATTATCAGCCCCTCAGCCTATCAGCGTGGGCATTGCACATGTTGTCTGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 72 bp GACAGACGCTTCACGGCAAGTTCCGGCCTCTCCTTCTaGGGTATGATTGTCCTGTGTGTCTACACAACTTAC +
Preference number: 6 (lower is better)
Translates to: DRRFTASSGLSF*GMIVLCVYTTY
Trigger: GTAAGTTGTGTAGACACACAGGACAATCATACCTCAGAAGGAGAGGCCGGAACTTGCCGTGAAGCGTCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 72 bp GTGGAGGGAAGATTGGTTTGTACTGAGTCTGATGAATaGTTGGGGATGGTAACAGGCGGGGGTTTATGCCCA +
Preference number: 6 (lower is better)
Translates to: VEGRLVCTESDE*LGMVTGGGLCP
Trigger: TGGGCATAAACCCCCGCCTGTTACCATCCCCAACCATTCATCAGACTCAGTACAAACCAATCTTCCCTCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 72 bp GAGGGAAGATTGGTTTGTACTGAGTCTGATGAATGGTaGGGGATGGTAACAGGCGGGGGTTTATGCCCACTG +
Preference number: 6 (lower is better)
Translates to: EGRLVCTESDEW*GMVTGGGLCPL
Trigger: CAGTGGGCATAAACCCCCGCCTGTTACCATCCCCAACCATTCATCAGACTCAGTACAAACCAATCTTCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 90 bp TCGCTGTCACAACTGTCACTGGGTTTCCCATGTTGGTTTGCAACATaGCAGGAAGTATGGACAGTTCATCAACAATCTGCATCGCGCCGC +
Preference number: 6 (lower is better)
Translates to: SLSQLSLGFPCWFAT*QEVWTVHQQSASRR
Trigger: GCGGCGCGATGCAGATTGTTGATGAACTGTCCATACTTCCTGCAATGTTGCAAACCAACATGGGAAACCCAGTGACAGTTGTGACAGCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 90 bp AAGAATGTGGAGGGAAGATTGGTTTGTACTGAGTCTGATGAATGGTaGGGGATGGTAACAGGCGGGGGTTTATGCCCACTGGGACTTGGT +
Preference number: 6 (lower is better)
Translates to: KNVEGRLVCTESDEW*GMVTGGGLCPLGLG
Trigger: ACCAAGTCCCAGTGGGCATAAACCCCCGCCTGTTACCATCCCCAACCATTCATCAGACTCAGTACAAACCAATCTTCCCTCCACATTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp ACTCATCAGCGTTCTCTGTACTCAGCCTTGCCAAGATaGTCACTTCTATCTGCCCTTGACGTGCATACGAAG +
Preference number: 6 (lower is better)
Translates to: THQRSLYSALPR*SLLSALDVHTK
Trigger: CTTCGTATGCACGTCAAGGGCAGATAGAAGTGAGCATCTTGGCAAGGCTGAGTACAGAGAACGCTGATGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp TTAGAAGAGGCGGTGGCATCACCGAGTTGTAATGATTaGTGTGTGGAATCATTTTCCCCCAGTCTCCAAGCC +
Preference number: 6 (lower is better)
Translates to: LEEAVASPSCND*CVESFSPSLQA
Trigger: GGCTTGGAGACTGGGGGAAAATGATTCCACACAGCAATCATTACAACTCGGTGATGCCACCGCCTCTTCTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 72 bp GAAGAACAGGCCGGATCACCTTCAGGGGCAGGGGACTaGATTTATTCTGTTTCAGGAAGTCATACAGGTTCT +
Preference number: 6 (lower is better)
Translates to: EEQAGSPSGAGD*IYSVSGSHTGS
Trigger: AGAACCTGTATGACTTCCTGAAACAGAATAAATTCAGTCCCCTGCCCCTGAAGGTGATCCGGCCTGTTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 72 bp TTCTGGCACAACTTATTTTTCTTGGTAGTGGCAGGCTaGGGCCAGACAACATGTGCAATGCCCACGCTGATA +
Preference number: 6 (lower is better)
Translates to: FWHNLFFLVVAG*GQTTCAMPTLI
Trigger: TATCAGCGTGGGCATTGCACATGTTGTCTGGCCTCAGCCTGCCACTACCAAGAAAAATAAGTTGTGCCAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 72 bp GGAGCTGGTGCTCAGAGTGCTATCAGGACTGCTGAGTaGACACATCCGATCAATATTCAAAGTGCTTTGGCA +
Preference number: 6 (lower is better)
Translates to: GAGAQSAIRTAE*THPINIQSALA
Trigger: TGCCAAAGCACTTTGAATATTGATCGGATGTGTTCACTCAGCAGTCCTGATAGCACTCTGAGCACCAGCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp GCCTTTTCTCAATGGCTGGCATGTAGAATCCGTGTTTaGCATGTGCTCGTCAACACTCAGTCCACTTTCTCT +
Preference number: 6 (lower is better)
Translates to: AFSQWLACRIRV*HVLVNTQSTFS
Trigger: AGAGAAAGTGGACTGAGTGTTGACGAGCACATGGCAAACACGGATTCTACATGCCAGCCATTGAGAAAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 72 bp GGTTTCCCATGTTGGTTTGCAACATTGCAGGAAGTATaGACAGTTCATCAACAATCTGCATCGCGCCGCTGT +
Preference number: 6 (lower is better)
Translates to: GFPCWFATLQEV*TVHQQSASRRC
Trigger: ACAGCGGCGCGATGCAGATTGTTGATGAACTGTCCATACTTCCTGCAATGTTGCAAACCAACATGGGAAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 72 bp TTGCTGTCTTCGATGCCCAAAGTTTCCATTCCATTCTaGATGCCCAGTTCCGAAATGCTGAACCTGGCTCAG +
Preference number: 6 (lower is better)
Translates to: LLSSMPKVSIPF*MPSSEMLNLAQ
Trigger: CTGAGCCAGGTTCAGCATTTCGGAACTGGGCATCAAGAATGGAATGGAAACTTTGGGCATCGAAGACAGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 90 bp CAGTATACGCAGGTGATGCTGCAATGTAAGAATGTGGAGGGAAGATaGGTTTGTACTGAGTCTGATGAATGGTTGGGGATGGTAACAGGC +
Preference number: 6 (lower is better)
Translates to: QYTQVMLQCKNVEGR*VCTESDEWLGMVTG
Trigger: GCCTGTTACCATCCCCAACCATTCATCAGACTCAGTACAAACCAATCTTCCCTCCACATTCTTACATTGCAGCATCACCTGCGTATACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 72 bp CTGAGGAGCTGGTGCTCAGAGTGCTATCAGGACTGCTaGGTGAACACATCCGATCAATATTCAAAGTGCTTT +
Preference number: 6 (lower is better)
Translates to: LRSWCSECYQDC*VNTSDQYSKCF
Trigger: AAAGCACTTTGAATATTGATCGGATGTGTTCACTCAGCAGTCCTGATAGCACTCTGAGCACCAGCTCCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 72 bp GCCGATCCAAAGTCTATCACTTTAACCCTGTACGGCTaGCGAACAGGATCCACCAACATAATATTCTCTGGT +
Preference number: 6 (lower is better)
Translates to: ADPKSITLTLYG*RTGSTNIIFSG
Trigger: ACCAGAGAATATTATGTTGGTGGATCCTGTTCGCCAGCCGTACAGGGTTAAAGTGATAGACTTTGGATCGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 72 bp GGTTTATGCCCACTGGGACTTGGTGAACTATGCCACTaGGATGGGAGATATTGTAAGTTGGATGCTGTAACA +
Preference number: 6 (lower is better)
Translates to: GLCPLGLGELCH*DGRYCKLDAVT
Trigger: TGTTACAGCATCCAACTTACAATATCTCCCATCCCAGTGGCATAGTTCACCAAGTCCCAGTGGGCATAAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 72 bp CAAGCGGAACTGTATTGTCTACCCTTATGGAATAACTaGTGGGTTTACCATGTGCTGCAGGAATACCTTGGA +
Preference number: 6 (lower is better)
Translates to: QAELYCLPLWNN*WVYHVLQEYLG
Trigger: TCCAAGGTATTCCTGCAGCACATGGTAAACCCACCAGTTATTCCATAAGGGTAGACAATACAGTTCCGCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 72 bp CCTGAGTTACAAGCGGAACTGTATTGTCTACCCTTATaGAATAACTGGTGGGTTTACCATGTGCTGCAGGAA +
Preference number: 6 (lower is better)
Translates to: PELQAELYCLPL*NNWWVYHVLQE
Trigger: TTCCTGCAGCACATGGTAAACCCACCAGTTATTCCATAAGGGTAGACAATACAGTTCCGCTTGTAACTCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 90 bp AATATATGCTTGCTGTCTTCGATGCCCAAAGTTTCCATTCCATTCTaGATGCCCAGTTCCGAAATGCTGAACCTGGCTCAGGTTCAAATG +
Preference number: 6 (lower is better)
Translates to: NICLLSSMPKVSIPF*MPSSEMLNLAQVQM
Trigger: CATTTGAACCTGAGCCAGGTTCAGCATTTCGGAACTGGGCATCAAGAATGGAATGGAAACTTTGGGCATCGAAGACAGCAAGCATATATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 72 bp CAACTGTCACTGGGTTTCCCATGTTGGTTTGCAACATaGCAGGAAGTATGGACAGTTCATCAACAATCTGCA +
Preference number: 6 (lower is better)
Translates to: QLSLGFPCWFAT*QEVWTVHQQSA
Trigger: TGCAGATTGTTGATGAACTGTCCATACTTCCTGCAATGTTGCAAACCAACATGGGAAACCCAGTGACAGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 90 bp AGAAAGCGTGAATGGATTACTGGTAACACTAGTAGGAATATATGCTaGCTGTCTTCGATGCCCAAAGTTTCCATTCCATTCTTGATGCCC +
Preference number: 6 (lower is better)
Translates to: RKREWITGNTSRNIC*LSSMPKVSIPFLMP
Trigger: GGGCATCAAGAATGGAATGGAAACTTTGGGCATCGAAGACAGCAAGCATATATTCCTACTAGTGTTACCAGTAATCCATTCACGCTTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 72 bp ATCTTTGTCTGGAAAGCACTACCTTTCGTGGAAGGATaGGAATTGCCAAAGTTTCTACCATTCACATGGATC +
Preference number: 6 (lower is better)
Translates to: IFVWKALPFVEG*ELPKFLPFTWI
Trigger: GATCCATGTGAATGGTAGAAACTTTGGCAATTCTCATCCTTCCACGAAAGGTAGTGCTTTCCAGACAAAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp CGTGAATGGATTACTGGTAACACTAGTAGGAATATATaGTTGCTGTCTTCGATGCCCAAAGTTTCCATTCCA +
Preference number: 6 (lower is better)
Translates to: REWITGNTSRNI*LLSSMPKVSIP
Trigger: TGGAATGGAAACTTTGGGCATCGAAGACAGCAAGCATATATTCCTACTAGTGTTACCAGTAATCCATTCACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 72 bp AGTAGCGAGATTGAAGATACGTTGAGCAAACAGTCTTaGATACATGACTGGCCGATCCAAAGTCTATCACTT +
Preference number: 6 (lower is better)
Translates to: SSEIEDTLSKQS*IHDWPIQSLSL
Trigger: AAGTGATAGACTTTGGATCGGCCAGTCATGTATCAAAGACTGTTTGCTCAACGTATCTTCAATCTCGCTACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CCA 72 bp TTCGATGCGACTGGTCGTAAGAGTGACATTTTACTGTaGTTATTTGTTTCACATGAACTCGGAGACTTACAA +
Preference number: 6 (lower is better)
Translates to: FDATGRKSDILL*LFVSHELGDLQ
Trigger: TTGTAAGTCTCCGAGTTCATGTGAAACAAATAACCACAGTAAAATGTCACTCTTACGACCAGTCGCATCGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 72 bp GAATGGATTACTGGTAACACTAGTAGGAATATATGCTaGCTGTCTTCGATGCCCAAAGTTTCCATTCCATTC +
Preference number: 6 (lower is better)
Translates to: EWITGNTSRNIC*LSSMPKVSIPF
Trigger: GAATGGAATGGAAACTTTGGGCATCGAAGACAGCAAGCATATATTCCTACTAGTGTTACCAGTAATCCATTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS GCA 72 bp AATGGATTACTGGTAACACTAGTAGGAATATATGCTTaGTGTCTTCGATGCCCAAAGTTTCCATTCCATTCT +
Preference number: 6 (lower is better)
Translates to: NGLLVTLVGIYA*CLRCPKFPFHS
Trigger: AGAATGGAATGGAAACTTTGGGCATCGAAGACAGCAAGCATATATTCCTACTAGTGTTACCAGTAATCCATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS TCA 72 bp TTGTTTCACATGAACTCGGAGACTTACAAATATCCATaGTATGAAAACAGGACTTTACATGGTTGCTGTGAG +
Preference number: 6 (lower is better)
Translates to: LFHMNSETYKYP*YENRTLHGCCE
Trigger: CTCACAGCAACCATGTAAAGTCCTGTTTTCATATCATGGATATTTGTAAGTCTCCGAGTTCATGTGAAACAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3
CDS CAA 90 bp TTCCCACTGATTATCTTTGGAGAAATAAATGCTGAATGTGGGATATaGGTGTTCTGCAATGAATTACTCCTGTTCTGGCACAACTTATTT +
Preference number: 6 (lower is better)
Translates to: FPLIIFGEINAECGI*VFCNELLLFWHNLF
Trigger: AAATAAGTTGTGCCAGAACAGGAGTAATTCATTGCAGAACACCAATATCCCACATTCAGCATTTATTTCTCCAAAGATAATCAGTGGGAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
CDS CCA 72 bp GGAAAATCTAGTAGATGCTTCATATTAACGAATGGGTaGTTCAGAGTCTCAATTGGAGTAATTCTTAAATCT +
Preference number: 6 (lower is better)
Translates to: GKSSRCFILTNG*FRVSIGVILKS
Trigger: AGATTTAAGAATTACTCCAATTGAGACTCTGAACCACCCATTCGTTAATATGAAGCATCTACTAGATTTTCC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028600.14
ENSMUST00000111124.8
ENSMUST00000111125.3