Pregenerated sensors for HINT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028470Ensembl transcript IDs: ENSMUST00000030192.5
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | CCACAAGGTTCCTTTTCCCATTCTCCGTCCAAGCATCCAGGCCTGTGGTCCTTGCCGGGAGAAGATGGTTaGCGATGCTCCTCCAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: PQGSFSHSPSKHPGLWSLPGEDG*RCSSRS Trigger: GCTCCTGGAGGAGCATCGCCAACCATCTTCTCCCGG...CAAGGACCACAGGCCTGGATGCTTGGACGGAGAATGGGAAAAGGAACCTTGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030192.5 |
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| CDS-3UTR GCA 90 bp | TTAACACCACAAGGTTCCTTTTCCCATTCTCCGTCCAAGCATCCAGGCCTGTGGTGCTCCTCCAGGAGCTaGTTTCTGGGCCTTGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: LTPQGSFSHSPSKHPGLWCSSRS*FLGLGH Trigger: GTGGCCAAGGCCCAGAAAGCAGCTCCTGGAGGAGCA...CCACAGGCCTGGATGCTTGGACGGAGAATGGGAAAAGGAACCTTGTGGTGTTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030192.5 |
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| CDS-3UTR GCA 90 bp | TTCCTTTTCCCATTCTCCGTCCAAGCATCCAGGCCTGTGGTCCTTGGCCAGCTGGAAGATGGTTGGCGATaGTCCTCCAGGAGCTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: FLFPFSVQASRPVVLGQLEDGWR*SSRSCF Trigger: AAAGCAGCTCCTGGAGGAGCATCGCCAACCATCTTC...CAGCTGGCCAAGGACCACAGGCCTGGATGCTTGGACGGAGAATGGGAAAAGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030192.5 |
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| CDS-3UTR CCA 90 bp | TTCCTTTTCCCATTCTCCGTCCAAGCATCCAGGCCTGTGGTCCTTGGCCAGCTGAAATCCGGGAGAAGATaGTTGGCGATGCTCCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: FLFPFSVQASRPVVLGQLKSGRR*LAMLLQ Trigger: CTGGAGGAGCATCGCCAACCATCTTCTCCCGGATTT...CAGCTGGCCAAGGACCACAGGCCTGGATGCTTGGACGGAGAATGGGAAAAGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030192.5 |
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| CDS-3UTR CCA 90 bp | GTTCCTTTTCCCATTCTCCGTCCAAGCATCCAGGCCTGTGGTCCTTGGCCAGCTCCATCTTTCAGACCCTaGGCCTGTGCTATCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: VPFPILRPSIQACGPWPAPSFRP*ACAIFL Trigger: CAAGAAGATAGCACAGGCCCAGGGTCTGAAAGATGG...AGCTGGCCAAGGACCACAGGCCTGGATGCTTGGACGGAGAATGGGAAAAGGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030192.5 |
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| CDS-3UTR CCA 90 bp | AGTTTATTAACACCACAAGGTTCCTTTTCCCATTCTCCGTCCAAGCATCCAGGCTGTCCTAGAAGCTGCTaGTCGTCCTCTTCAGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: SLLTPQGSFSHSPSKHPGCPRSC*SSSSAW Trigger: CCAGGCTGAAGAGGACGACCAGCAGCTTCTAGGACA...GCCTGGATGCTTGGACGGAGAATGGGAAAAGGAACCTTGTGGTGTTAATAAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030192.5 |
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| CDS-3UTR TCA 90 bp | CACAAGGTTCCTTTTCCCATTCTCCGTCCAAGCATCCAGGCCTGTGGTCCTTGGAACACAAGGCACTGCTaGTCTTCATATAGAATGTCA | + |
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Preference number: 4 (lower is better) Translates to: HKVPFPILRPSIQACGPWNTRHC*SSYRMS Trigger: TGACATTCTATATGAAGATCAGCAGTGCCTTGTGTT...CCAAGGACCACAGGCCTGGATGCTTGGACGGAGAATGGGAAAAGGAACCTTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030192.5 |
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| CDS-3UTR CAA 90 bp | TTTTCCCATTCTCCGTCCAAGCATCCAGGCCTGTGGTCCTTGGCCAGCTGGCAGTCCGGGAGAAGATGGTaGGCGATGCTCCTCCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: FSHSPSKHPGLWSLASWQSGRRW*AMLLQE Trigger: CTCCTGGAGGAGCATCGCCAACCATCTTCTCCCGGA...CTGCCAGCTGGCCAAGGACCACAGGCCTGGATGCTTGGACGGAGAATGGGAAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030192.5 |
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| CDS-3UTR CAA 90 bp | GTTCCTTTTCCCATTCTCCGTCCAAGCATCCAGGCCTGTGGTCCTTGGCCAGCTGACTGTGCGCCCATCTaGCCATCATTAACCACAAGT | + |
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Preference number: 5 (lower is better) Translates to: VPFPILRPSIQACGPWPADCAPI*PSLTTS Trigger: ACTTGTGGTTAATGATGGCAAGATGGGCGCACAGTC...AGCTGGCCAAGGACCACAGGCCTGGATGCTTGGACGGAGAATGGGAAAAGGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030192.5 |
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| CDS-3UTR CAA 90 bp | ACCACAAGGTTCCTTTTCCCATTCTCCGTCCAAGCATCCAGGCCTGTGGTCCTTGCCTGTGCTATCTTCTaGGCCACAAGGAGTAAGTGT | + |
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Preference number: 5 (lower is better) Translates to: TTRFLFPFSVQASRPVVLACAIF*ATRSKC Trigger: ACACTTACTCCTTGTGGCCAAGAAGATAGCACAGGC...AAGGACCACAGGCCTGGATGCTTGGACGGAGAATGGGAAAAGGAACCTTGTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030192.5 |
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| CDS CCA 72 bp | TTGGCGATGCTCCTCCAGGAGCTGCTTTCTGGGCCTTaGCCACTTCACTCCCGTCGGACACCCCTGCGTTTC | + |
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Preference number: 6 (lower is better) Translates to: LAMLLQELLSGP*PLHSRRTPLRF Trigger: GAAACGCAGGGGTGTCCGACGGGAGTGAAGTGGCCAAGGCCCAGAAAGCAGCTCCTGGAGGAGCATCGCCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030192.5 |
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| CDS CCA 72 bp | CAGCTGGGAGACTCCGGTCCAAAATCCGGGAGAAGATaGTTGGCGATGCTCCTCCAGGAGCTGCTTTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: QLGDSGPKSGRR*LAMLLQELLSG Trigger: CCCAGAAAGCAGCTCCTGGAGGAGCATCGCCAACCATCTTCTCCCGGATTTTGGACCGGAGTCTCCCAGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030192.5 |
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