Pregenerated sensors for HINT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020267Ensembl transcript IDs: ENSMUST00000020504.6, ENSMUST00000117710.2
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | GGCAAAACTACGTGTGCCATTTATCTTACTGGAGCTTaGCAACTATCTAGAGAAGGACACTTTATCCCCAAC | + |
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Preference number: 3 (lower is better) Translates to: GKTTCAIYLTGA*QLSREGHFIPN Trigger: GTTGGGGATAAAGTGTCCTTCTCTAGATAGTTGGCAAGCTCCAGTAAGATAAATGGCACACGTAGTTTTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020504.6 |
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| CDS-3UTR TCA 90 bp | CAATTTCTCCATATACAGGCAAAACTACGTGTGCCATTTATCTTACTGGAGCTTCCGGGCTGGGCCACTTaGGCCTTGGCAATCTCGTCA | + |
|
Preference number: 4 (lower is better) Translates to: QFLHIQAKLRVPFILLELPGWAT*ALAISS Trigger: TGACGAGATTGCCAAGGCTCAAGTGGCCCAGCCCGG...AAGCTCCAGTAAGATAAATGGCACACGTAGTTTTGCCTGTATATGGAGAAATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020504.6 |
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| CDS-3UTR GCA 90 bp | ATCTCTTCAATTTCTCCATATACAGGCAAAACTACGTGTGCCATTTATCTTACTCAGAAAGTGTGTTGGTaGTTGAGGGGAAATGTCATG | + |
|
Preference number: 4 (lower is better) Translates to: ISSISPYTGKTTCAIYLTQKVCW*LRGNVM Trigger: CATGACATTTCCCCTCAAGCACCAACACACTTTCTG...AGTAAGATAAATGGCACACGTAGTTTTGCCTGTATATGGAGAAATTGAAGAGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020504.6 |
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| CDS-3UTR CAA 90 bp | AATTTCTCCATATACAGGCAAAACTACGTGTGCCATTTATCTTACTGGAGCTTGGCCGGGCTGGGCCACTaGAGCCTTGGCAATCTCGTC | + |
|
Preference number: 5 (lower is better) Translates to: NFSIYRQNYVCHLSYWSLAGLGH*SLGNLV Trigger: GACGAGATTGCCAAGGCTCAAGTGGCCCAGCCCGGC...CAAGCTCCAGTAAGATAAATGGCACACGTAGTTTTGCCTGTATATGGAGAAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020504.6 |
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| CDS-3UTR CAA 90 bp | AATTTCTCCATATACAGGCAAAACTACGTGTGCCATTTATCTTACTGGAGCTTGTTGGCGGGGATTTCTTaGCGGATGATCTTGCCGAAG | + |
|
Preference number: 5 (lower is better) Translates to: NFSIYRQNYVCHLSYWSLLAGIS*RMILPK Trigger: CTTCGGCAAGATCATCCGCAAAGAAATCCCCGCCAA...CAAGCTCCAGTAAGATAAATGGCACACGTAGTTTTGCCTGTATATGGAGAAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020504.6 |
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| CDS-3UTR CAA 90 bp | CAATTTCTCCATATACAGGCAAAACTACGTGTGCCATTTATCTTACTGGAGCTTTCCTCGAAGATGATCTaGGCGGGGATTTCTTTGCGG | + |
|
Preference number: 5 (lower is better) Translates to: QFLHIQAKLRVPFILLELSSKMI*AGISLR Trigger: CCGCAAAGAAATCCCCGCCAAGATCATCTTCGAGGA...AAGCTCCAGTAAGATAAATGGCACACGTAGTTTTGCCTGTATATGGAGAAATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020504.6 |
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| CDS-3UTR CAA 90 bp | ATCTCTTCAATTTCTCCATATACAGGCAAAACTACGTGTGCCATTTATCTTACTTCTTTGCGGATGATCTaGCCGAAGATCGTGTCGCCG | + |
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Preference number: 5 (lower is better) Translates to: ISSISPYTGKTTCAIYLTSLRMI*PKIVSP Trigger: CGGCGACACGATCTTCGGCAAGATCATCCGCAAAGA...AGTAAGATAAATGGCACACGTAGTTTTGCCTGTATATGGAGAAATTGAAGAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020504.6 |
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| CDS-3UTR CAA 90 bp | ATGATCTCTTCAATTTCTCCATATACAGGCAAAACTACGTGTGCCATTTATCTTTGGGATATATGCTTCTaGGGTATCACCAGAAAGTGT | + |
|
Preference number: 5 (lower is better) Translates to: MISSISPYTGKTTCAIYLWDICF*GITRKC Trigger: ACACTTTCTGGTGATACCCAAGAAGCATATATCCCA...AAGATAAATGGCACACGTAGTTTTGCCTGTATATGGAGAAATTGAAGAGATCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020504.6 |
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| CDS CAA 90 bp | GCAAGACACCGGTCGTCCTCGAAGATGATCTTGGCGGGGATTTCTTaGCGGATGATCTTGCCGAAGATCGTGTCGCCGCCGGGCTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: ARHRSSSKMILAGIS*RMILPKIVSPPGWA Trigger: GGCCCAGCCCGGCGGCGACACGATCTTCGGCAAGATCATCCGCAAAGAAATCCCCGCCAAGATCATCTTCGAGGACGACCGGTGTCTTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020504.6 ENSMUST00000117710.2 |
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| CDS CAA 72 bp | CGGTCGTCCTCGAAGATGATCTTGGCGGGGATTTCTTaGCGGATGATCTTGCCGAAGATCGTGTCGCCGCCG | + |
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Preference number: 6 (lower is better) Translates to: RSSSKMILAGIS*RMILPKIVSPP Trigger: CGGCGGCGACACGATCTTCGGCAAGATCATCCGCAAAGAAATCCCCGCCAAGATCATCTTCGAGGACGACCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020504.6 ENSMUST00000117710.2 |
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