Pregenerated sensors for HILPDA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043421Ensembl transcript IDs: ENSMUST00000054445.9, ENSMUST00000115289.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCCAGGGTAAGGGAACAGCCCTTCCAGGCCTAGTAAGAGTCCTTTaGAGACACTTGATGCTGCCTCCCGAGAAATGGAACGTGTGGTTG | + |
|
Preference number: 1 (lower is better) Translates to: FQGKGTALPGLVRVL*RHLMLPPEKWNVWL Trigger: CAACCACACGTTCCATTTCTCGGGAGGCAGCATCAAGTGTCTCCAAAGGACTCTTACTAGGCCTGGAAGGGCTGTTCCCTTACCCTGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054445.9 ENSMUST00000115289.2 |
||
| 3UTR TCA 90 bp | CTGGATAGTCCACCCTCTGTCTTCACAGTCAAACCACAACCCCTTTaGTGCCATCCAAACAACTCTCAGGGAAGAGACTCAATGGTAAAC | + |
|
Preference number: 1 (lower is better) Translates to: LDSPPSVFTVKPQPL*CHPNNSQGRDSMVN Trigger: GTTTACCATTGAGTCTCTTCCCTGAGAGTTGTTTGGATGGCATCAAAGGGGTTGTGGTTTGACTGTGAAGACAGAGGGTGGACTATCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054445.9 |
||
| 3UTR CCA 90 bp | ACATTTATTGCATTAGAAAAATTCATGTTTAAGCCACACAGTGGCTaGAACTCCCATACCCTAAGCAGGCCTGATCATCCCATAGCCCTT | + |
|
Preference number: 1 (lower is better) Translates to: TFIALEKFMFKPHSG*NSHTLSRPDHPIAL Trigger: AAGGGCTATGGGATGATCAGGCCTGCTTAGGGTATGGGAGTTCCAGCCACTGTGTGGCTTAAACATGAATTTTTCTAATGCAATAAATGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054445.9 |
||
| 3UTR TCA 90 bp | AAACACATGTGCATTACACTGGAGAAAGAACTTAAATGTACAACTTaGCCTGGACACTGGATAGTCCACCCTCTGTCTTCACAGTCAAAC | + |
|
Preference number: 1 (lower is better) Translates to: KHMCITLEKELKCTT*PGHWIVHPLSSQSN Trigger: GTTTGACTGTGAAGACAGAGGGTGGACTATCCAGTGTCCAGGTCAAGTTGTACATTTAAGTTCTTTCTCCAGTGTAATGCACATGTGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054445.9 |
||
| 3UTR CAA 90 bp | AAGGGAACAGCCCTTCCAGGCCTAGTAAGAGTCCTTTGGAGACACTaGATGCTGCCTCCCGAGAAATGGAACGTGTGGTTGGACATGCTG | + |
|
Preference number: 2 (lower is better) Translates to: KGTALPGLVRVLWRH*MLPPEKWNVWLDML Trigger: CAGCATGTCCAACCACACGTTCCATTTCTCGGGAGGCAGCATCAAGTGTCTCCAAAGGACTCTTACTAGGCCTGGAAGGGCTGTTCCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054445.9 ENSMUST00000115289.2 |
||
| 3UTR-3UTR TCA 90 bp | GACAGAGGTCTGAAACAAACGAAACCAAAATCCATTCTCCCAACAGCTGGAACTGACATGCTGAAGCTGTaGTGCCTGCAGGGAGGGAGG | + |
|
Preference number: 2 (lower is better) Translates to: DRGLKQTKPKSILPTAGTDMLKL*CLQGGR Trigger: CCTCCCTCCCTGCAGGCATCACAGCTTCAGCATGTC...AGTTCCAGCTGTTGGGAGAATGGATTTTGGTTTCGTTTGTTTCAGACCTCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054445.9 ENSMUST00000115289.2 |
||
| 3UTR-3UTR TCA 90 bp | TCTCAGGGAAGAGACTCAATGGTAAACCAACAGAAGATACTTAGGTCCAAAAGAGACATGCTGAAGCTGTaGTGCCTGCAGGGAGGGAGG | + |
|
Preference number: 2 (lower is better) Translates to: SQGRDSMVNQQKILRSKRDMLKL*CLQGGR Trigger: CCTCCCTCCCTGCAGGCATCACAGCTTCAGCATGTC...TCTTTTGGACCTAAGTATCTTCTGTTGGTTTACCATTGAGTCTCTTCCCTGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054445.9 |
||
| 3UTR-3UTR TCA 90 bp | AACTTGACCTGGACACTGGATAGTCCACCCTCTGTCTTCACAGTCAAACCACAATCCTTTGGAGACACTTaGTGCTGCCTCCCGAGAAAT | + |
|
Preference number: 2 (lower is better) Translates to: NLTWTLDSPPSVFTVKPQSFGDT*CCLPRN Trigger: ATTTCTCGGGAGGCAGCATCAAGTGTCTCCAAAGGA...TTGTGGTTTGACTGTGAAGACAGAGGGTGGACTATCCAGTGTCCAGGTCAAGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054445.9 |
||
| 3UTR-3UTR CCA 90 bp | GTCCACCCTCTGTCTTCACAGTCAAACCACAACCCCTTTGATGCCATCCAAACACTAGTAAGAGTCCTTTaGAGACACTTGATGCTGCCT | + |
|
Preference number: 2 (lower is better) Translates to: VHPLSSQSNHNPFDAIQTLVRVL*RHLMLP Trigger: AGGCAGCATCAAGTGTCTCCAAAGGACTCTTACTAG...TGTTTGGATGGCATCAAAGGGGTTGTGGTTTGACTGTGAAGACAGAGGGTGGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054445.9 |
||
| 3UTR-3UTR CCA 90 bp | CAAAAGAGTCCTTTAGGACAGAGGTCTGAAACAAACGAAACCAAAATCCATTCTCTAGTAAGAGTCCTTTaGAGACACTTGATGCTGCCT | + |
|
Preference number: 2 (lower is better) Translates to: QKSPLGQRSETNETKIHSLVRVL*RHLMLP Trigger: AGGCAGCATCAAGTGTCTCCAAAGGACTCTTACTAG...AGAATGGATTTTGGTTTCGTTTGTTTCAGACCTCTGTCCTAAAGGACTCTTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054445.9 ENSMUST00000115289.2 |
||
| 3UTR CCA 72 bp | AAGGGAACAGCCCTTCCAGGCCTAGTAAGAGTCCTTTaGAGACACTTGATGCTGCCTCCCGAGAAATGGAAC | + |
|
Preference number: 3 (lower is better) Translates to: KGTALPGLVRVL*RHLMLPPEKWN Trigger: GTTCCATTTCTCGGGAGGCAGCATCAAGTGTCTCCAAAGGACTCTTACTAGGCCTGGAAGGGCTGTTCCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054445.9 ENSMUST00000115289.2 |
||
| 3UTR-3UTR CAA 90 bp | CAGAGGTCTGAAACAAACGAAACCAAAATCCATTCTCCCAACAGCTGGAACTGGGTCCTTTGGAGACACTaGATGCTGCCTCCCGAGAAA | + |
|
Preference number: 3 (lower is better) Translates to: QRSETNETKIHSPNSWNWVLWRH*MLPPEK Trigger: TTTCTCGGGAGGCAGCATCAAGTGTCTCCAAAGGAC...CCAGTTCCAGCTGTTGGGAGAATGGATTTTGGTTTCGTTTGTTTCAGACCTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054445.9 ENSMUST00000115289.2 |
||
| 3UTR CCA 72 bp | GCATTAGAAAAATTCATGTTTAAGCCACACAGTGGCTaGAACTCCCATACCCTAAGCAGGCCTGATCATCCC | + |
|
Preference number: 3 (lower is better) Translates to: ALEKFMFKPHSG*NSHTLSRPDHP Trigger: GGGATGATCAGGCCTGCTTAGGGTATGGGAGTTCCAGCCACTGTGTGGCTTAAACATGAATTTTTCTAATGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054445.9 |
||
| 3UTR TCA 72 bp | TGCATTACACTGGAGAAAGAACTTAAATGTACAACTTaGCCTGGACACTGGATAGTCCACCCTCTGTCTTCA | + |
|
Preference number: 3 (lower is better) Translates to: CITLEKELKCTT*PGHWIVHPLSS Trigger: TGAAGACAGAGGGTGGACTATCCAGTGTCCAGGTCAAGTTGTACATTTAAGTTCTTTCTCCAGTGTAATGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054445.9 |
||
| 3UTR TCA 72 bp | TACTTAGGTCCAAAAGAGTCCTTTAGGACAGAGGTCTaGAACAAACGAAACCAAAATCCATTCTCCCAACAG | + |
|
Preference number: 3 (lower is better) Translates to: YLGPKESFRTEV*NKRNQNPFSQQ Trigger: CTGTTGGGAGAATGGATTTTGGTTTCGTTTGTTTCAGACCTCTGTCCTAAAGGACTCTTTTGGACCTAAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054445.9 ENSMUST00000115289.2 |
||
| CDS-3UTR TCA 90 bp | GTCCTTTGGAGACACTTGATGCTGCCTCCCGAGAAATGGAACGTGTGGTTGGACTGTGTGTTGGCTAGCTaGCCCCTCGTGATCCAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: VLWRHLMLPPEKWNVWLDCVLAS*PLVIQE Trigger: CTCCTGGATCACGAGGGGTCAGCTAGCCAACACACA...GTCCAACCACACGTTCCATTTCTCGGGAGGCAGCATCAAGTGTCTCCAAAGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054445.9 ENSMUST00000115289.2 |
||
| CDS-3UTR TCA 90 bp | GGAACAGCCCTTCCAGGCCTAGTAAGAGTCCTTTGGAGACACTTGATGCTGCCTAAAGCAGGGTCAACATaGTGCCCAGCACATAGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: GTALPGLVRVLWRHLMLPKAGST*CPAHRG Trigger: ACCTCTATGTGCTGGGCATCATGTTGACCCTGCTTT...AGGCAGCATCAAGTGTCTCCAAAGGACTCTTACTAGGCCTGGAAGGGCTGTTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054445.9 ENSMUST00000115289.2 |
||
| CDS-3UTR CCA 90 bp | GGACAGAGGTCTGAAACAAACGAAACCAAAATCCATTCTCCCAACAGCTGGAACTCGGGATGGATGGTCTaGCAGGCCCTTAGGAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GQRSETNETKIHSPNSWNSGWMV*QALRRL Trigger: CAGCCTCCTAAGGGCCTGCCAGACCATCCATCCCGA...GTTCCAGCTGTTGGGAGAATGGATTTTGGTTTCGTTTGTTTCAGACCTCTGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054445.9 ENSMUST00000115289.2 |
||
| CDS-3UTR TCA 90 bp | CCTTTGGAGACACTTGATGCTGCCTCCCGAGAAATGGAACGTGTGGTTGGACATAAAGCAGGGTCAACATaGTGCCCAGCACATAGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: PLETLDAASREMERVVGHKAGST*CPAHRG Trigger: ACCTCTATGTGCTGGGCATCATGTTGACCCTGCTTT...ATGTCCAACCACACGTTCCATTTCTCGGGAGGCAGCATCAAGTGTCTCCAAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054445.9 ENSMUST00000115289.2 |
||
| CDS-3UTR TCA 90 bp | GGACAGAGGTCTGAAACAAACGAAACCAAAATCCATTCTCCCAACAGCTGGAACTGTGTGTTGGCTAGCTaGCCCCTCGTGATCCAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: GQRSETNETKIHSPNSWNCVLAS*PLVIQE Trigger: CTCCTGGATCACGAGGGGTCAGCTAGCCAACACACA...GTTCCAGCTGTTGGGAGAATGGATTTTGGTTTCGTTTGTTTCAGACCTCTGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054445.9 ENSMUST00000115289.2 |
||
| 3UTR CAA 72 bp | TCCACCCTCTGTCTTCACAGTCAAACCACAACCCCTTaGATGCCATCCAAACAACTCTCAGGGAAGAGACTC | + |
|
Preference number: 4 (lower is better) Translates to: STLCLHSQTTTP*MPSKQLSGKRL Trigger: GAGTCTCTTCCCTGAGAGTTGTTTGGATGGCATCAAAGGGGTTGTGGTTTGACTGTGAAGACAGAGGGTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054445.9 |
||
| CDS TCA 90 bp | GATGGATGGTCTGGCAGGCCCTTAGGAGGCTGTGTGTTGGCTAGCTaGCCCCTCGTGATCCAGGAGCTCCCGGGCAGTGGGCTCTCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: DGWSGRPLGGCVLAS*PLVIQELPGSGLSS Trigger: ACTGGAGAGCCCACTGCCCGGGAGCTCCTGGATCACGAGGGGTCAGCTAGCCAACACACAGCCTCCTAAGGGCCTGCCAGACCATCCATC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054445.9 ENSMUST00000115289.2 |
||
| CDS TCA 72 bp | TCTGGCAGGCCCTTAGGAGGCTGTGTGTTGGCTAGCTaGCCCCTCGTGATCCAGGAGCTCCCGGGCAGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: SGRPLGGCVLAS*PLVIQELPGSG Trigger: CCCACTGCCCGGGAGCTCCTGGATCACGAGGGGTCAGCTAGCCAACACACAGCCTCCTAAGGGCCTGCCAGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054445.9 ENSMUST00000115289.2 |
||