Pregenerated sensors for HIKESHI (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062797Ensembl transcript IDs: ENSMUST00000078918.10, ENSMUST00000150740.2, ENSMUST00000153470.9, ENSMUST00000207309.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCAGTCAGGAGGCAGGGGCTGGGCATTCTCAGCGACAGAGGGAGTaGGAGACTAGCCTGGGCCACATGAGACCCTGTCTCAAAACCAAA | + |
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Preference number: 1 (lower is better) Translates to: SSQEAGAGHSQRQRE*ETSLGHMRPCLKTK Trigger: TTTGGTTTTGAGACAGGGTCTCATGTGGCCCAGGCTAGTCTCCCACTCCCTCTGTCGCTGAGAATGCCCAGCCCCTGCCTCCTGACTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR GCA 90 bp | TTAGCTCAAGGCTCCAAACCTGCTAAGTTTCCTTTTATAGAGGCATaGTCTGGTTCCTTTGCTGTGCATGCTCCTTGGACGAGTAAGCAT | + |
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Preference number: 1 (lower is better) Translates to: LAQGSKPAKFPFIEA*SGSFAVHAPWTSKH Trigger: ATGCTTACTCGTCCAAGGAGCATGCACAGCAAAGGAACCAGAGCATGCCTCTATAAAAGGAAACTTAGCAGGTTTGGAGCCTTGAGCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR-3UTR TCA 90 bp | CAAATGGGTGCTGGCTTCCTTCCCCTGCTCTTCCAATCTTGGCCTCTTCTGTTTGAATGCAATGCTCCCTaGCTGAGGCATTCGCTACTT | + |
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Preference number: 2 (lower is better) Translates to: QMGAGFLPLLFQSWPLLFECNAP*LRHSLL Trigger: AAGTAGCGAATGCCTCAGTCAGGGAGCATTGCATTC...AAACAGAAGAGGCCAAGATTGGAAGAGCAGGGGAAGGAAGCCAGCACCCATTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078918.10 |
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| 3UTR-3UTR CCA 90 bp | AGTATGAGTCTTTGTAAGGGAGACAGAGTGTTTTCCCTTCATATGCAAAGGTACCAGCGACAGAGGGAGTaGGAGACTAGCCTGGGCCAC | + |
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Preference number: 2 (lower is better) Translates to: SMSLCKGDRVFSLHMQRYQRQRE*ETSLGH Trigger: GTGGCCCAGGCTAGTCTCCCACTCCCTCTGTCGCTG...GTACCTTTGCATATGAAGGGAAAACACTCTGTCTCCCTTACAAAGACTCATACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR-3UTR TCA 90 bp | CCCAGGTCCCATAAGAGCAGCAAAGTGCTCTTGATCACTGAGTCATCTCGACAGGAACTATTCCAGATCTaGATGCTACAGAGCAGACAG | + |
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Preference number: 2 (lower is better) Translates to: PRSHKSSKVLLITESSRQELFQI*MLQSRQ Trigger: CTGTCTGCTCTGTAGCATTCAGATCTGGAATAGTTC...CTGTCGAGATGACTCAGTGATCAAGAGCACTTTGCTGCTCTTATGGGACCTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150740.2 |
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| 3UTR-3UTR CCA 90 bp | AGTATGAGTCTTTGTAAGGGAGACAGAGTGTTTTCCCTTCATATGCAAAGGTACTCAGGAGGCAGGGGCTaGGCATTCTCAGCGACAGAG | + |
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Preference number: 2 (lower is better) Translates to: SMSLCKGDRVFSLHMQRYSGGRG*AFSATE Trigger: CTCTGTCGCTGAGAATGCCCAGCCCCTGCCTCCTGA...GTACCTTTGCATATGAAGGGAAAACACTCTGTCTCCCTTACAAAGACTCATACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR-3UTR TCA 90 bp | TCTACTGGAGCCAGAAGAGGACATCAGATCCTTCCTCTGAAACTGGAGTTACAAGCAGCAAAGTGCTCTTaGTCACTGAGTCATCTCGAC | + |
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Preference number: 2 (lower is better) Translates to: STGARRGHQILPLKLELQAAKCS*SLSHLD Trigger: GTCGAGATGACTCAGTGATCAAGAGCACTTTGCTGC...TTGTAACTCCAGTTTCAGAGGAAGGATCTGATGTCCTCTTCTGGCTCCAGTAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150740.2 |
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| 3UTR-3UTR GCA 90 bp | AAAGGTAGGTTTCATGACCCTTTTGACTTCATGCTTTTACATCACATGACAAGTCTGGCTTCCTTCCCCTaGTCTTCCAATCTTGGCCTC | + |
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Preference number: 2 (lower is better) Translates to: KGRFHDPFDFMLLHHMTSLASFP*SSNLGL Trigger: GAGGCCAAGATTGGAAGAGCAGGGGAAGGAAGCCAG...ACTTGTCATGTGATGTAAAAGCATGAAGTCAAAAGGGTCATGAAACCTACCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000078918.10 |
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| 3UTR-3UTR GCA 90 bp | CATGCAAGAAATTTCCAAAGGCAGTTTGGGTGTGCAATTAAACTAGATCCTTGTCTGGTTCCTTTGCTGTaGATGCTCCTTGGACGAGTA | + |
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Preference number: 2 (lower is better) Translates to: HARNFQRQFGCAIKLDPCLVPLL*MLLGRV Trigger: TACTCGTCCAAGGAGCATGCACAGCAAAGGAACCAG...ACAAGGATCTAGTTTAATTGCACACCCAAACTGCCTTTGGAAATTTCTTGCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR-3UTR TCA 90 bp | TGCTTCACCAGTATGAGTCTTTGTAAGGGAGACAGAGTGTTTTCCCTTCATATGACATTAAACAGGGCATaGTGGATAAAGCCTGTAATC | + |
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Preference number: 2 (lower is better) Translates to: CFTSMSLCKGDRVFSLHMTLNRA*WIKPVI Trigger: GATTACAGGCTTTATCCATCATGCCCTGTTTAATGT...CATATGAAGGGAAAACACTCTGTCTCCCTTACAAAGACTCATACTGGTGAAGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR-3UTR TCA 90 bp | TGCTTCACCAGTATGAGTCTTTGTAAGGGAGACAGAGTGTTTTCCCTTCATATGACAACCAACCACTCTTaGTTGAAAAACAACAGCTTG | + |
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Preference number: 2 (lower is better) Translates to: CFTSMSLCKGDRVFSLHMTTNHS*LKNNSL Trigger: CAAGCTGTTGTTTTTCAATCAAGAGTGGTTGGTTGT...CATATGAAGGGAAAACACTCTGTCTCCCTTACAAAGACTCATACTGGTGAAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR-3UTR TCA 90 bp | CATGCAAGAAATTTCCAAAGGCAGTTTGGGTGTGCAATTAAACTAGATCCTTGTCATATGCAAAGGTACTaGGTCCTACACTCTCTATAT | + |
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Preference number: 2 (lower is better) Translates to: HARNFQRQFGCAIKLDPCHMQRY*VLHSLY Trigger: ATATAGAGAGTGTAGGACTCAGTACCTTTGCATATG...ACAAGGATCTAGTTTAATTGCACACCCAAACTGCCTTTGGAAATTTCTTGCATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR-3UTR TCA 90 bp | CAGTTTATACAAAATGTTTGCCTCCAAGAAGTATGTCACACTTATAAGGGAGAATCGCTACTTCCTCCTTaGCTCTTGAAACACTTTACA | + |
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Preference number: 2 (lower is better) Translates to: QFIQNVCLQEVCHTYKGESLLPP*LLKHFT Trigger: TGTAAAGTGTTTCAAGAGTCAAGGAGGAAGTAGCGA...TTCTCCCTTATAAGTGTGACATACTTCTTGGAGGCAAACATTTTGTATAAACTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078918.10 |
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| 3UTR-3UTR TCA 90 bp | AAAGGTAGGTTTCATGACCCTTTTGACTTCATGCTTTTACATCACATGACAAGTCATATAATTCTCCACTaGAGATGTCACTGGAATGCA | + |
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Preference number: 2 (lower is better) Translates to: KGRFHDPFDFMLLHHMTSHIILH*RCHWNA Trigger: TGCATTCCAGTGACATCTTCAGTGGAGAATTATATG...ACTTGTCATGTGATGTAAAAGCATGAAGTCAAAAGGGTCATGAAACCTACCTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078918.10 |
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| 3UTR CCA 72 bp | GAGGCAGGGGCTGGGCATTCTCAGCGACAGAGGGAGTaGGAGACTAGCCTGGGCCACATGAGACCCTGTCTC | + |
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Preference number: 3 (lower is better) Translates to: EAGAGHSQRQRE*ETSLGHMRPCL Trigger: GAGACAGGGTCTCATGTGGCCCAGGCTAGTCTCCCACTCCCTCTGTCGCTGAGAATGCCCAGCCCCTGCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR-3UTR CAA 90 bp | AGCAGTCAGGAGGCAGGGGCTGGGCATTCTCAGCGACAGAGGGAGTGGGAGACTGGTTTCATGACCCTTTaGACTTCATGCTTTTACATC | + |
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Preference number: 3 (lower is better) Translates to: SSQEAGAGHSQRQREWETGFMTL*TSCFYI Trigger: GATGTAAAAGCATGAAGTCAAAAGGGTCATGAAACC...AGTCTCCCACTCCCTCTGTCGCTGAGAATGCCCAGCCCCTGCCTCCTGACTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR CCA 72 bp | GAGGCATGCTCTGGTTCCTTTGCTGTGCATGCTCCTTaGACGAGTAAGCATCGAGTAAGGCAAAGCAGCTTT | + |
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Preference number: 3 (lower is better) Translates to: EACSGSFAVHAP*TSKHRVRQSSF Trigger: AAAGCTGCTTTGCCTTACTCGATGCTTACTCGTCCAAGGAGCATGCACAGCAAAGGAACCAGAGCATGCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR GCA 72 bp | GGCTCCAAACCTGCTAAGTTTCCTTTTATAGAGGCATaGTCTGGTTCCTTTGCTGTGCATGCTCCTTGGACG | + |
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Preference number: 3 (lower is better) Translates to: GSKPAKFPFIEA*SGSFAVHAPWT Trigger: CGTCCAAGGAGCATGCACAGCAAAGGAACCAGAGCATGCCTCTATAAAAGGAAACTTAGCAGGTTTGGAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR TCA 72 bp | CTACTGGAGCCAGAAGAGGACATCAGATCCTTCCTCTaGAACTGGAGTTACAATCAGTTATGGGTGCTGGGA | + |
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Preference number: 3 (lower is better) Translates to: LLEPEEDIRSFL*NWSYNQLWVLG Trigger: TCCCAGCACCCATAACTGATTGTAACTCCAGTTTCAGAGGAAGGATCTGATGTCCTCTTCTGGCTCCAGTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150740.2 |
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| 3UTR-3UTR CAA 90 bp | TACTGGAGCCAGAAGAGGACATCAGATCCTTCCTCTGAAACTGGAGTTACAATCAGCAGCAAAGTGCTCTaGATCACTGAGTCATCTCGA | + |
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Preference number: 3 (lower is better) Translates to: YWSQKRTSDPSSETGVTISSKVL*ITESSR Trigger: TCGAGATGACTCAGTGATCAAGAGCACTTTGCTGCT...GATTGTAACTCCAGTTTCAGAGGAAGGATCTGATGTCCTCTTCTGGCTCCAGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150740.2 |
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| 3UTR-3UTR CAA 90 bp | AGAATAATTTGGGGGAAAAGTCACATTGCATGTAAAGTCAACCAAACGCTGACACATGCTCTGGTTCCTTaGCTGTGCATGCTCCTTGGA | + |
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Preference number: 3 (lower is better) Translates to: RIIWGKSHIACKVNQTLTHALVP*LCMLLG Trigger: TCCAAGGAGCATGCACAGCAAAGGAACCAGAGCATG...TGTCAGCGTTTGGTTGACTTTACATGCAATGTGACTTTTCCCCCAAATTATTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR-3UTR CAA 90 bp | CATCAGATCCTTCCTCTGAAACTGGAGTTACAATCAGTTATGGGTGCTGGGAACCTGGGAGAAAATGTTTaGATCCATTGTTCAAGTGTG | + |
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Preference number: 3 (lower is better) Translates to: HQILPLKLELQSVMGAGNLGENV*IHCSSV Trigger: CACACTTGAACAATGGATCAAAACATTTTCTCCCAG...GTTCCCAGCACCCATAACTGATTGTAACTCCAGTTTCAGAGGAAGGATCTGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150740.2 |
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| 3UTR TCA 72 bp | GGAAAAGTCACATTGCATGTAAAGTCAACCAAACGCTaGCATGCAAGAAATTTCCAAAGGCAGTTTGGGTGT | + |
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Preference number: 3 (lower is better) Translates to: GKVTLHVKSTKR*HARNFQRQFGC Trigger: ACACCCAAACTGCCTTTGGAAATTTCTTGCATGTCAGCGTTTGGTTGACTTTACATGCAATGTGACTTTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR GCA 72 bp | AGTCACATTGCATGTAAAGTCAACCAAACGCTGACATaGAAGAAATTTCCAAAGGCAGTTTGGGTGTGCAAT | + |
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Preference number: 3 (lower is better) Translates to: SHIACKVNQTLT*KKFPKAVWVCN Trigger: ATTGCACACCCAAACTGCCTTTGGAAATTTCTTGCATGTCAGCGTTTGGTTGACTTTACATGCAATGTGACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR TCA 72 bp | CCACTTACACCCTTTGAAGACAAAAGACACTGCCAGTaGCCTGATTTCCAATTTCTTAAAATGATCTGCCAA | + |
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Preference number: 3 (lower is better) Translates to: PLTPFEDKRHCQ*PDFQFLKMICQ Trigger: TTGGCAGATCATTTTAAGAAATTGGAAATCAGGTCACTGGCAGTGTCTTTTGTCTTCAAAGGGTGTAAGTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| 3UTR TCA 72 bp | AGGAAACGGCTACTATGTAATAGGATATTTAGGATGTaGACTATTCCAGATCTGAATGCTACAGAGCAGACA | + |
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Preference number: 3 (lower is better) Translates to: RKRLLCNRIFRM*TIPDLNATEQT Trigger: TGTCTGCTCTGTAGCATTCAGATCTGGAATAGTTCACATCCTAAATATCCTATTACATAGTAGCCGTTTCCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150740.2 |
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| CDS-3UTR GCA 90 bp | CAGCAGTCAGGAGGCAGGGGCTGGGCATTCTCAGCGACAGAGGGAGTGGGAGACCTCTGCCACTTGCTGTaGAGCTGTTTGCACCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: QQSGGRGWAFSATEGVGDLCHLL*SCLHQP Trigger: AGGCTGGTGCAAACAGCTGCACAGCAAGTGGCAGAG...GTCTCCCACTCCCTCTGTCGCTGAGAATGCCCAGCCCCTGCCTCCTGACTGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| CDS-3UTR GCA 90 bp | CAAATGGGTGCTGGCTTCCTTCCCCTGCTCTTCCAATCTTGGCCTCTTCTGTTTTTATCCTCTGCCACTTaGTGTGCAGCTGTTTGCACC | + |
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Preference number: 4 (lower is better) Translates to: QMGAGFLPLLFQSWPLLFLSSAT*CAAVCT Trigger: GGTGCAAACAGCTGCACAGCAAGTGGCAGAGGATAA...AAACAGAAGAGGCCAAGATTGGAAGAGCAGGGGAAGGAAGCCAGCACCCATTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078918.10 |
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| CDS-3UTR TCA 90 bp | CCCAGGTCCCATAAGAGCAGCAAAGTGCTCTTGATCACTGAGTCATCTCGACAGCCACATTTGCTGGGATaGACATTTCTGATGGATTTG | + |
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Preference number: 4 (lower is better) Translates to: PRSHKSSKVLLITESSRQPHLLG*TFLMDL Trigger: CAAATCCATCAGAAATGTTCATCCCAGCAAATGTGG...CTGTCGAGATGACTCAGTGATCAAGAGCACTTTGCTGCTCTTATGGGACCTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150740.2 |
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| CDS-3UTR GCA 90 bp | CAGTTTATACAAAATGTTTGCCTCCAAGAAGTATGTCACACTTATAAGGGAGAACTCTGCCACTTGCTGTaGAGCTGTTTGCACCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: QFIQNVCLQEVCHTYKGELCHLL*SCLHQP Trigger: AGGCTGGTGCAAACAGCTGCACAGCAAGTGGCAGAG...TTCTCCCTTATAAGTGTGACATACTTCTTGGAGGCAAACATTTTGTATAAACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078918.10 ENSMUST00000153470.9 ENSMUST00000207309.2 |
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| CDS-3UTR GCA 90 bp | CATGCAAGAAATTTCCAAAGGCAGTTTGGGTGTGCAATTAAACTAGATCCTTGTTTATCCTCTGCCACTTaGTGTGCAGCTGTTTGCACC | + |
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Preference number: 4 (lower is better) Translates to: HARNFQRQFGCAIKLDPCLSSAT*CAAVCT Trigger: GGTGCAAACAGCTGCACAGCAAGTGGCAGAGGATAA...ACAAGGATCTAGTTTAATTGCACACCCAAACTGCCTTTGGAAATTTCTTGCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| CDS-3UTR GCA 90 bp | AAAGGTAGGTTTCATGACCCTTTTGACTTCATGCTTTTACATCACATGACAAGTTTATCCTCTGCCACTTaGTGTGCAGCTGTTTGCACC | + |
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Preference number: 4 (lower is better) Translates to: KGRFHDPFDFMLLHHMTSLSSAT*CAAVCT Trigger: GGTGCAAACAGCTGCACAGCAAGTGGCAGAGGATAA...ACTTGTCATGTGATGTAAAAGCATGAAGTCAAAAGGGTCATGAAACCTACCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078918.10 ENSMUST00000153470.9 ENSMUST00000207309.2 |
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| CDS-3UTR CCA 90 bp | TACTGGAGCCAGAAGAGGACATCAGATCCTTCCTCTGAAACTGGAGTTACAATCACTAGAGATTGGAATTaGCTCATACCATTTCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: YWSQKRTSDPSSETGVTITRDWN*LIPFQN Trigger: GTTCTGAAATGGTATGAGCCAATTCCAATCTCTAGT...GATTGTAACTCCAGTTTCAGAGGAAGGATCTGATGTCCTCTTCTGGCTCCAGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150740.2 |
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| CDS-3UTR TCA 90 bp | CATGCAAGAAATTTCCAAAGGCAGTTTGGGTGTGCAATTAAACTAGATCCTTGTCCACATTTGCTGGGATaGACATTTCTGATGGATTTG | + |
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Preference number: 4 (lower is better) Translates to: HARNFQRQFGCAIKLDPCPHLLG*TFLMDL Trigger: CAAATCCATCAGAAATGTTCATCCCAGCAAATGTGG...ACAAGGATCTAGTTTAATTGCACACCCAAACTGCCTTTGGAAATTTCTTGCATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| CDS-3UTR TCA 90 bp | AAAGGTAGGTTTCATGACCCTTTTGACTTCATGCTTTTACATCACATGACAAGTCCACATTTGCTGGGATaGACATTTCTGATGGATTTG | + |
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Preference number: 4 (lower is better) Translates to: KGRFHDPFDFMLLHHMTSPHLLG*TFLMDL Trigger: CAAATCCATCAGAAATGTTCATCCCAGCAAATGTGG...ACTTGTCATGTGATGTAAAAGCATGAAGTCAAAAGGGTCATGAAACCTACCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000153470.9 ENSMUST00000207309.2 |
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| CDS-3UTR GCA 90 bp | AAAGGTAGGTTTCATGACCCTTTTGACTTCATGCTTTTACATCACATGACAAGTAACAAATTTATCCTCTaGCACTTGCTGTGCAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: KGRFHDPFDFMLLHHMTSNKFIL*HLLCSC Trigger: ACAGCTGCACAGCAAGTGGCAGAGGATAAATTTGTT...ACTTGTCATGTGATGTAAAAGCATGAAGTCAAAAGGGTCATGAAACCTACCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078918.10 ENSMUST00000153470.9 ENSMUST00000207309.2 |
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| CDS-3UTR GCA 90 bp | CAGTTTATACAAAATGTTTGCCTCCAAGAAGTATGTCACACTTATAAGGGAGAAAACAAATTTATCCTCTaGCACTTGCTGTGCAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: QFIQNVCLQEVCHTYKGENKFIL*HLLCSC Trigger: ACAGCTGCACAGCAAGTGGCAGAGGATAAATTTGTT...TTCTCCCTTATAAGTGTGACATACTTCTTGGAGGCAAACATTTTGTATAAACTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078918.10 ENSMUST00000153470.9 ENSMUST00000207309.2 |
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| CDS-3UTR CAA 90 bp | AGCAGTCAGGAGGCAGGGGCTGGGCATTCTCAGCGACAGAGGGAGTGGGAGACTTTTATCCTCTGCCACTaGCTGTGCAGCTGTTTGCAC | + |
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Preference number: 5 (lower is better) Translates to: SSQEAGAGHSQRQREWETFILCH*LCSCLH Trigger: GTGCAAACAGCTGCACAGCAAGTGGCAGAGGATAAA...AGTCTCCCACTCCCTCTGTCGCTGAGAATGCCCAGCCCCTGCCTCCTGACTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153470.9 |
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| CDS-3UTR CAA 90 bp | AAAGGTAGGTTTCATGACCCTTTTGACTTCATGCTTTTACATCACATGACAAGTTTGCTGTGCAGCTGTTaGCACCAGCCTCCCCGCCAC | + |
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Preference number: 5 (lower is better) Translates to: KGRFHDPFDFMLLHHMTSLLCSC*HQPPRH Trigger: GTGGCGGGGAGGCTGGTGCAAACAGCTGCACAGCAA...ACTTGTCATGTGATGTAAAAGCATGAAGTCAAAAGGGTCATGAAACCTACCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000078918.10 ENSMUST00000153470.9 ENSMUST00000207309.2 |
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| CDS-3UTR CAA 90 bp | CAGTTTATACAAAATGTTTGCCTCCAAGAAGTATGTCACACTTATAAGGGAGAATTGCTGTGCAGCTGTTaGCACCAGCCTCCCCGCCAC | + |
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Preference number: 5 (lower is better) Translates to: QFIQNVCLQEVCHTYKGELLCSC*HQPPRH Trigger: GTGGCGGGGAGGCTGGTGCAAACAGCTGCACAGCAA...TTCTCCCTTATAAGTGTGACATACTTCTTGGAGGCAAACATTTTGTATAAACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000078918.10 ENSMUST00000153470.9 ENSMUST00000207309.2 |
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| CDS-3UTR CAA 90 bp | CAGTTTATACAAAATGTTTGCCTCCAAGAAGTATGTCACACTTATAAGGGAGAATTTATCCTCTGCCACTaGCTGTGCAGCTGTTTGCAC | + |
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Preference number: 5 (lower is better) Translates to: QFIQNVCLQEVCHTYKGEFILCH*LCSCLH Trigger: GTGCAAACAGCTGCACAGCAAGTGGCAGAGGATAAA...TTCTCCCTTATAAGTGTGACATACTTCTTGGAGGCAAACATTTTGTATAAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078918.10 ENSMUST00000153470.9 ENSMUST00000207309.2 |
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