Pregenerated sensors for HIGD2A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025868

Ensembl transcript IDs: ENSMUST00000026986.7

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	GCATCACAAATAGAAGCATGCAACCCAACTGAAATGAACCTGGGATTTTGGGAGCGGAGGGAGCAAGTCTaGCAGGGATGTCTGTTGTTC	+
Preference number: 2 (lower is better) Translates to: ASQIEACNPTEMNLGFWERREQV*QGCLLF Trigger: GAACAACAGACATCCCTGTCAGACTTGCTCCCTCCG...CTCCCAAAATCCCAGGTTCATTTCAGTTGGGTTGCATGCTTCTATTTGTGATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026986.7
3UTR CCA 72 bp	GAAGCATGCAACCCAACTGAAATGAACCTGGGATTTTaGGAGCGGGAGGGGGCAGCGGTGGAAGCGCAAATC	+
Preference number: 3 (lower is better) Translates to: EACNPTEMNLGF*EREGAAVEAQI Trigger: GATTTGCGCTTCCACCGCTGCCCCCTCCCGCTCCCAAAATCCCAGGTTCATTTCAGTTGGGTTGCATGCTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026986.7
3UTR TCA 72 bp	ACAATAAGGTCCGGTCTGAAACGGAGGGAGCAAGTCTaGCAGGGATGTCTGTTGTTCCTGGGTTTTGTAATG	+
Preference number: 3 (lower is better) Translates to: TIRSGLKRREQV*QGCLLFLGFVM Trigger: CATTACAAAACCCAGGAACAACAGACATCCCTGTCAGACTTGCTCCCTCCGTTTCAGACCGGACCTTATTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026986.7
CDS-3UTR TCA 90 bp	TTACAAAATCGGCCACTTCCTCACCCAAATGACAATAAGGTCCGGTCTGAAACGTCCGGGTGCGCATCATaGGTTGGGATCGGTGGCTCT	+
Preference number: 4 (lower is better) Translates to: LQNRPLPHPNDNKVRSETSGCAS*VGIGGS Trigger: AGAGCCACCGATCCCAACTCATGATGCGCACCCGGA...CGTTTCAGACCGGACCTTATTGTCATTTGGGTGAGGAAGTGGCCGATTTTGTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026986.7
CDS-3UTR CCA 90 bp	GGTGGAAGCGCAAATCAGTTACAAAATCGGCCACTTCCTCACCCAAATGACAATGTGCGCATCATGAGTTaGGATCGGTGGCTCTGGCCG	+
Preference number: 4 (lower is better) Translates to: GGSANQLQNRPLPHPNDNVRIMS*DRWLWP Trigger: CGGCCAGAGCCACCGATCCCAACTCATGATGCGCAC...ATTGTCATTTGGGTGAGGAAGTGGCCGATTTTGTAACTGATTTGCGCTTCCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026986.7
CDS-3UTR CCA 90 bp	GGTGGAAGCGCAAATCAGTTACAAAATCGGCCACTTCCTCACCCAAATGACAATGCCTATAGGCACCATTaGGTTCTCACGGGTCTTGCG	+
Preference number: 4 (lower is better) Translates to: GGSANQLQNRPLPHPNDNAYRHH*VLTGLA Trigger: CGCAAGACCCGTGAGAACCCAATGGTGCCTATAGGC...ATTGTCATTTGGGTGAGGAAGTGGCCGATTTTGTAACTGATTTGCGCTTCCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026986.7