Pregenerated sensors for HIGD1C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000093550

Ensembl transcript IDs: ENSMUST00000175683.8, ENSMUST00000177211.2

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	CAACCGCTTAGCATCGTGAGATACAGATTCTATGAGGATTCTGTGTaGGTTACACGTTGTAGCATGATTCAGAACACAATGAGAATTCCT	+
Preference number: 1 (lower is better) Translates to: QPLSIVRYRFYEDSV*VTRCSMIQNTMRIP Trigger: AGGAATTCTCATTGTGTTCTGAATCATGCTACAACGTGTAACTCACACAGAATCCTCATAGAATCTGTATCTCACGATGCTAAGCGGTTG 41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177211.2
CDS-3UTR CCA 90 bp	TTTTCTGATGCTAGCACTGAAGGAGCCGGCCGTCCTTGCTTCCAGCTTCTGGCTAGGAGTCGGGACAGCTaGCCTTCATCCTCAGCTGCT	+
Preference number: 4 (lower is better) Translates to: FSDASTEGAGRPCFQLLARSRDS*PSSSAA Trigger: AGCAGCTGAGGATGAAGGCCAGCTGTCCCGACTCCT...AGCCAGAAGCTGGAAGCAAGGACGGCCGGCTCCTTCAGTGCTAGCATCAGAAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175683.8 ENSMUST00000177211.2
CDS-3UTR CCA 90 bp	ATTCCTTTTTCTGATGCTAGCACTGAAGGAGCCGGCCGTCCTTGCTTCCAGCTTAGGAGTCGGGACAGCTaGCCTTCATCCTCAGCTGCT	+
Preference number: 4 (lower is better) Translates to: IPFSDASTEGAGRPCFQLRSRDS*PSSSAA Trigger: AGCAGCTGAGGATGAAGGCCAGCTGTCCCGACTCCT...AAGCTGGAAGCAAGGACGGCCGGCTCCTTCAGTGCTAGCATCAGAAAAAGGAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175683.8 ENSMUST00000177211.2
CDS CCA 72 bp	GGGGAGTCTCTCGATTTCCGGAGGAGTCGGGACAGCTaGCCTTCATCCTCAGCTGCTGACCACTCATCTGAA	+
Preference number: 6 (lower is better) Translates to: GESLDFRRSRDS*PSSSAADHSSE Trigger: TTCAGATGAGTGGTCAGCAGCTGAGGATGAAGGCCAGCTGTCCCGACTCCTCCGGAAATCGAGAGACTCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175683.8 ENSMUST00000177211.2