Pregenerated sensors for HIGD1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020928Ensembl transcript IDs: ENSMUST00000021302.15, ENSMUST00000107072.2, ENSMUST00000107073.8
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTCTGGACATGGCACCAAGCATaGTGGCCCCCACAGCACACG | + |
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Preference number: 4 (lower is better) Translates to: ALLEHADSRGTGPSCHLWTWHQA*WPPQHT Trigger: CGTGTGCTGTGGGGGCCATCATGCTTGGTGCCATGT...CCAGAGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR TCA 90 bp | ATAGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTCACATGGCACCAAGCATaGTGGCCCCCACAGCACACG | + |
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Preference number: 4 (lower is better) Translates to: IALLEHADSRGTGPSCHLTWHQA*WPPQHT Trigger: CGTGTGCTGTGGGGGCCATCATGCTTGGTGCCATGT...GAGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCTAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR TCA 90 bp | CATAGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTACATGGCACCAAGCATaGTGGCCCCCACAGCACACG | + |
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Preference number: 4 (lower is better) Translates to: HSFIRTCRQPGDWAILPPTWHQA*WPPQHT Trigger: CGTGTGCTGTGGGGGCCATCATGCTTGGTGCCATGT...AGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCTATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR CCA 90 bp | AGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTCTGCCTGTGCCGCCACTCTaGTGTGAATCAGATGGATGG | + |
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Preference number: 4 (lower is better) Translates to: SFIRTCRQPGDWAILPPLPVPPL*CESDGW Trigger: CCATCCATCTGATTCACACCAGAGTGGCGGCACAGG...CAGAGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR CCA 90 bp | CATAGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTCCTGTGCCGCCACTCTaGTGTGAATCAGATGGATGG | + |
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Preference number: 4 (lower is better) Translates to: HSFIRTCRQPGDWAILPPPVPPL*CESDGW Trigger: CCATCCATCTGATTCACACCAGAGTGGCGGCACAGG...AGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCTATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR CCA 90 bp | AGCATAGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCCTGTGCCGCCACTCTaGTGTGAATCAGATGGATGG | + |
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Preference number: 4 (lower is better) Translates to: SIALLEHADSRGTGPSCHPVPPL*CESDGW Trigger: CCATCCATCTGATTCACACCAGAGTGGCGGCACAGG...GTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCTATGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR GCA 90 bp | AGCATAGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCCGGTAAATCCTGTATaGTGCTATCACCAGGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SIALLEHADSRGTGPSCHPVNPV*CYHQAA Trigger: GGCTGCCTGGTGATAGCAGCATACAGGATTTACCGG...GTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCTATGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR GCA 90 bp | CATAGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTCCGGTAAATCCTGTATaGTGCTATCACCAGGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: HSFIRTCRQPGDWAILPPPVNPV*CYHQAA Trigger: GGCTGCCTGGTGATAGCAGCATACAGGATTTACCGG...AGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCTATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR GCA 90 bp | ATAGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTCCCGGTAAATCCTGTATaGTGCTATCACCAGGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: IALLEHADSRGTGPSCHLPVNPV*CYHQAA Trigger: GGCTGCCTGGTGATAGCAGCATACAGGATTTACCGG...GAGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR CCA 90 bp | AGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTCTGCCAGTGGAGACTCCCTaGTCTTCCTTAGGAACTTCT | + |
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Preference number: 4 (lower is better) Translates to: SFIRTCRQPGDWAILPPLPVETP*SSLGTS Trigger: AGAAGTTCCTAAGGAAGACCAGGGAGTCTCCACTGG...CAGAGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR TCA 90 bp | CATAGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTCTTCTCGGCATCCTCTaGCACCCTCTTGATGTAATC | + |
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Preference number: 4 (lower is better) Translates to: HSFIRTCRQPGDWAILPPLLGIL*HPLDVI Trigger: GATTACATCAAGAGGGTGTCAGAGGATGCCGAGAAG...AGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCTATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR TCA 90 bp | ATAGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTCCTTCTCGGCATCCTCTaGCACCCTCTTGATGTAATC | + |
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Preference number: 4 (lower is better) Translates to: IALLEHADSRGTGPSCHLLLGIL*HPLDVI Trigger: GATTACATCAAGAGGGTGTCAGAGGATGCCGAGAAG...GAGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR CCA 90 bp | CATAGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTCCAGTGGAGACTCCCTaGTCTTCCTTAGGAACTTCT | + |
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Preference number: 4 (lower is better) Translates to: HSFIRTCRQPGDWAILPPPVETP*SSLGTS Trigger: AGAAGTTCCTAAGGAAGACCAGGGAGTCTCCACTGG...AGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCTATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS TCA 90 bp | AGCATGATGGCCCCCACAGCACACGCCTGTGCCGCCACTCTGGTGTaGATCAGATGGATGGAGAGCTTGGTAGAACCCCGAGCCTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: SMMAPTAHACAATLV*IRWMESLVEPRAFS Trigger: GCTGAAGGCTCGGGGTTCTACCAAGCTCTCCATCCATCTGATTCACACCAGAGTGGCGGCACAGGCGTGTGCTGTGGGGGCCATCATGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR CAA 90 bp | GCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTCTGGAACTTCTTGGACAGGTaGTCCTCACCCTCAGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: ALLEHADSRGTGPSCHLWNFLDR*SSPSGG Trigger: GCCACCTGAGGGTGAGGACAACCTGTCCAAGAAGTT...CCAGAGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS GCA 90 bp | GGAGAGCTTGGTAGAACCCCGAGCCTTCAGCCGGTAAATCCTGTATaGTGCTATCACCAGGCAGCCTGCTACACCTATAGGCACCAGTGG | + |
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Preference number: 5 (lower is better) Translates to: GELGRTPSLQPVNPV*CYHQAACYTYRHQW Trigger: CCACTGGTGCCTATAGGTGTAGCAGGCTGCCTGGTGATAGCAGCATACAGGATTTACCGGCTGAAGGCTCGGGGTTCTACCAAGCTCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS GCA 90 bp | GAGCTTGGTAGAACCCCGAGCCTTCAGCCGGTAAATCCTGTATGCTaGTATCACCAGGCAGCCTGCTACACCTATAGGCACCAGTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: ELGRTPSLQPVNPVC*YHQAACYTYRHQWR Trigger: TCTCCACTGGTGCCTATAGGTGTAGCAGGCTGCCTGGTGATAGCAGCATACAGGATTTACCGGCTGAAGGCTCGGGGTTCTACCAAGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS GCA 90 bp | TGTATACATGGCACCAAGCATGATGGCCCCCACAGCACACGCCTGTaGCGCCACTCTGGTGTGAATCAGATGGATGGAGAGCTTGGTAGA | + |
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Preference number: 5 (lower is better) Translates to: CIHGTKHDGPHSTRL*RHSGVNQMDGELGR Trigger: TCTACCAAGCTCTCCATCCATCTGATTCACACCAGAGTGGCGGCACAGGCGTGTGCTGTGGGGGCCATCATGCTTGGTGCCATGTATACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR CAA 90 bp | ATAGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTCAACTTCTTGGACAGGTaGTCCTCACCCTCAGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: IALLEHADSRGTGPSCHLNFLDR*SSPSGG Trigger: GCCACCTGAGGGTGAGGACAACCTGTCCAAGAAGTT...GAGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCTAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR CAA 90 bp | AGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTCTGTGTAATCTCTGTACATaGTATACATGGCACCAAGCA | + |
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Preference number: 5 (lower is better) Translates to: SFIRTCRQPGDWAILPPLCNLCT*YTWHQA Trigger: TGCTTGGTGCCATGTATACAATGTACAGAGATTACA...CAGAGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR CAA 90 bp | AGCATAGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACTGTAATCTCTGTACATaGTATACATGGCACCAAGCA | + |
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Preference number: 5 (lower is better) Translates to: SIALLEHADSRGTGPSCHCNLCT*YTWHQA Trigger: TGCTTGGTGCCATGTATACAATGTACAGAGATTACA...GTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCTATGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS-3UTR CAA 90 bp | ATAGCTTTATTAGAACATGCAGACAGCCGGGGGACTGGGCCATCCTGCCACCTCTGTAATCTCTGTACATaGTATACATGGCACCAAGCA | + |
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Preference number: 5 (lower is better) Translates to: IALLEHADSRGTGPSCHLCNLCT*YTWHQA Trigger: TGCTTGGTGCCATGTATACAATGTACAGAGATTACA...GAGGTGGCAGGATGGCCCAGTCCCCCGGCTGTCTGCATGTTCTAATAAAGCTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS TCA 72 bp | GCCCCCACAGCACACGCCTGTGCCGCCACTCTGGTGTaGATCAGATGGATGGAGAGCTTGGTAGAACCCCGA | + |
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Preference number: 6 (lower is better) Translates to: APTAHACAATLV*IRWMESLVEPR Trigger: TCGGGGTTCTACCAAGCTCTCCATCCATCTGATTCACACCAGAGTGGCGGCACAGGCGTGTGCTGTGGGGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS CAA 90 bp | CCTATAGGCACCAGTGGAGACTCCCTGGTCTTCCTTAGGAACTTCTaGGACAGGTTGTCCTCACCCTCAGGTGGCACCCACCAGCCCTTG | + |
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Preference number: 6 (lower is better) Translates to: PIGTSGDSLVFLRNF*DRLSSPSGGTHQPL Trigger: CAAGGGCTGGTGGGTGCCACCTGAGGGTGAGGACAACCTGTCCAAGAAGTTCCTAAGGAAGACCAGGGAGTCTCCACTGGTGCCTATAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS CCA 72 bp | CCAGTGGAGACTCCCTGGTCTTCCTTAGGAACTTCTTaGACAGGTTGTCCTCACCCTCAGGTGGCACCCACC | + |
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Preference number: 6 (lower is better) Translates to: PVETPWSSLGTS*TGCPHPQVAPT Trigger: GGTGGGTGCCACCTGAGGGTGAGGACAACCTGTCCAAGAAGTTCCTAAGGAAGACCAGGGAGTCTCCACTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS CAA 72 bp | ACCAGTGGAGACTCCCTGGTCTTCCTTAGGAACTTCTaGGACAGGTTGTCCTCACCCTCAGGTGGCACCCAC | + |
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Preference number: 6 (lower is better) Translates to: TSGDSLVFLRNF*DRLSSPSGGTH Trigger: GTGGGTGCCACCTGAGGGTGAGGACAACCTGTCCAAGAAGTTCCTAAGGAAGACCAGGGAGTCTCCACTGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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| CDS GCA 72 bp | GGTAGAACCCCGAGCCTTCAGCCGGTAAATCCTGTATaGTGCTATCACCAGGCAGCCTGCTACACCTATAGG | + |
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Preference number: 6 (lower is better) Translates to: GRTPSLQPVNPV*CYHQAACYTYR Trigger: CCTATAGGTGTAGCAGGCTGCCTGGTGATAGCAGCATACAGGATTTACCGGCTGAAGGCTCGGGGTTCTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021302.15 ENSMUST00000107072.2 ENSMUST00000107073.8 |
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