Pregenerated sensors for HIGD1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038412Ensembl transcript IDs: ENSMUST00000060251.8, ENSMUST00000215007.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACTGCCTTTCTGCAGCTCTTATCAGCTTTCCAAGTTGCTGTACGTaGACGCACGCACGCATGCACACACGCACACACACACACACACAC | + |
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Preference number: 1 (lower is better) Translates to: HCLSAALISFPSCCT*THARMHTRTHTHTH Trigger: GTGTGTGTGTGTGTGTGTGCGTGTGTGCATGCGTGCGTGCGTGCACGTACAGCAACTTGGAAAGCTGATAAGAGCTGCAGAAAGGCAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR TCA 90 bp | CTTCAACATTCAGAAAACACAGCAGTCTACAGGACCAGGCCAGTGTaGGCAGCTCACCGTGCGTGTCACACCGTTTTAATGAGCAATCAC | + |
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Preference number: 1 (lower is better) Translates to: LQHSENTAVYRTRPV*AAHRACHTVLMSNH Trigger: GTGATTGCTCATTAAAACGGTGTGACACGCACGGTGAGCTGCTCACACTGGCCTGGTCCTGTAGACTGCTGTGTTTTCTGAATGTTGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215007.2 |
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| 3UTR GCA 90 bp | ACCCTCCCAAAGCATGGCCTAGTCTGCACATATTGTGTGTGTATCTaGATTGTCAGCTGCCCTTCTTACAATGACTTTCATCACAAGGGT | + |
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Preference number: 1 (lower is better) Translates to: TLPKHGLVCTYCVCI*IVSCPSYNDFHHKG Trigger: ACCCTTGTGATGAAAGTCATTGTAAGAAGGGCAGCTGACAATGCAGATACACACACAATATGTGCAGACTAGGCCATGCTTTGGGAGGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR GCA 90 bp | GCCATGTATTTCCTTTATCCTTGTGTTACAACATACAGTACCTACTaGTGCCGGGGTTCAACTCCATGGTACAGCACTTGCTTGGCCTAT | + |
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Preference number: 1 (lower is better) Translates to: AMYFLYPCVTTYSTY*CRGSTPWYSTCLAY Trigger: ATAGGCCAAGCAAGTGCTGTACCATGGAGTTGAACCCCGGCAGCAGTAGGTACTGTATGTTGTAACACAAGGATAAAGGAAATACATGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR TCA 90 bp | ACAAGCAGACAAAATAAACGAACCAGAGCAAACAGGATTCTTTCCTaGCACCCTCCCAAAGCATGGCCTAGTCTGCACATATTGTGTGTG | + |
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Preference number: 1 (lower is better) Translates to: TSRQNKRTRANRILS*HPPKAWPSLHILCV Trigger: CACACACAATATGTGCAGACTAGGCCATGCTTTGGGAGGGTGTCAGGAAAGAATCCTGTTTGCTCTGGTTCGTTTATTTTGTCTGCTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR GCA 90 bp | ATGTATTTCCTTTATCCTTGTGTTACAACATACAGTACCTACTGCTaGCGGGGTTCAACTCCATGGTACAGCACTTGCTTGGCCTATGTG | + |
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Preference number: 1 (lower is better) Translates to: MYFLYPCVTTYSTYC*RGSTPWYSTCLAYV Trigger: CACATAGGCCAAGCAAGTGCTGTACCATGGAGTTGAACCCCGGCAGCAGTAGGTACTGTATGTTGTAACACAAGGATAAAGGAAATACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR GCA 90 bp | CATGGCCTAGTCTGCACATATTGTGTGTGTATCTGCATTGTCAGCTaGCCTTCTTACAATGACTTTCATCACAAGGGTGTGAGGAAAACA | + |
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Preference number: 1 (lower is better) Translates to: HGLVCTYCVCICIVS*PSYNDFHHKGVRKT Trigger: TGTTTTCCTCACACCCTTGTGATGAAAGTCATTGTAAGAAGGGCAGCTGACAATGCAGATACACACACAATATGTGCAGACTAGGCCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR TCA 90 bp | GCATTGTCAGCTGCCCTTCTTACAATGACTTTCATCACAAGGGTGTaGGGAAAACACTGTACCCAACTACTTTCAGGTGACAGATTTCTT | + |
|
Preference number: 1 (lower is better) Translates to: ALSAALLTMTFITRV*GKHCTQLLSGDRFL Trigger: AAGAAATCTGTCACCTGAAAGTAGTTGGGTACAGTGTTTTCCTCACACCCTTGTGATGAAAGTCATTGTAAGAAGGGCAGCTGACAATGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR TCA 90 bp | TCATATCCTTCTCAGAAAACTTACTATTACCCTGTGCTCAGAATCTaGGCAATGAAATTGAAGACTTACAGAATAAGGATTTCCCATTAC | + |
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Preference number: 1 (lower is better) Translates to: SYPSQKTYYYPVLRI*AMKLKTYRIRISHY Trigger: GTAATGGGAAATCCTTATTCTGTAAGTCTTCAATTTCATTGCTCAGATTCTGAGCACAGGGTAATAGTAAGTTTTCTGAGAAGGATATGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215007.2 |
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| 3UTR-3UTR TCA 90 bp | ACGCACGCACGCATGCACACACGCACACACACACACACACACAATCTCTTTCTCAGGACCAGGCCAGTGTaGGCAGCTCACCGTGCGTGT | + |
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Preference number: 2 (lower is better) Translates to: THARMHTRTHTHTHNLFLRTRPV*AAHRAC Trigger: ACACGCACGGTGAGCTGCTCACACTGGCCTGGTCCT...GAGAAAGAGATTGTGTGTGTGTGTGTGTGTGCGTGTGTGCATGCGTGCGTGCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215007.2 |
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| 3UTR-3UTR CCA 90 bp | TGCAGCTCTTATCAGCTTTCCAAGTTGCTGTACGTGCACGCACGCACGCATGCACTGACCTCTCACTTTTaGTACCTGGATAGACACGGC | + |
|
Preference number: 2 (lower is better) Translates to: CSSYQLSKLLYVHARTHALTSHF*YLDRHG Trigger: GCCGTGTCTATCCAGGTACCAAAAGTGAGAGGTCAG...TGCATGCGTGCGTGCGTGCACGTACAGCAACTTGGAAAGCTGATAAGAGCTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR TCA 90 bp | TTCTGTATGTCCAAGTATGTGTGTAATGTCTCAAAACACCAGCCCACCCACTGCCAGCCCACCCACTGCTaGCCTCTCACTTTTGGTACC | + |
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Preference number: 2 (lower is better) Translates to: FCMSKYVCNVSKHQPTHCQPTHC*PLTFGT Trigger: GGTACCAAAAGTGAGAGGTCAGCAGTGGGTGGGCTG...GCAGTGGGTGGGCTGGTGTTTTGAGACATTACACACATACTTGGACATACAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR TCA 90 bp | ACGCACGCACGCATGCACACACGCACACACACACACACACACAATCTCTTTCTCCTGCCCTTCTTACAATaGCTTTCATCACAAGGGTGT | + |
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Preference number: 2 (lower is better) Translates to: THARMHTRTHTHTHNLFLLPFLQ*LSSQGC Trigger: ACACCCTTGTGATGAAAGTCATTGTAAGAAGGGCAG...GAGAAAGAGATTGTGTGTGTGTGTGTGTGTGCGTGTGTGCATGCGTGCGTGCGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR TCA 90 bp | TGCAGCTCTTATCAGCTTTCCAAGTTGCTGTACGTGCACGCACGCACGCATGCACCAACTACTTTCAGGTaGCAGATTTCTTCTGTGTTA | + |
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Preference number: 2 (lower is better) Translates to: CSSYQLSKLLYVHARTHAPTTFR*QISSVL Trigger: TAACACAGAAGAAATCTGTCACCTGAAAGTAGTTGG...TGCATGCGTGCGTGCGTGCACGTACAGCAACTTGGAAAGCTGATAAGAGCTGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR TCA 90 bp | ACGCACGCACGCATGCACACACGCACACACACACACACACACAATCTCTTTCTCCCAACTACTTTCAGGTaGCAGATTTCTTCTGTGTTA | + |
|
Preference number: 2 (lower is better) Translates to: THARMHTRTHTHTHNLFLPTTFR*QISSVL Trigger: TAACACAGAAGAAATCTGTCACCTGAAAGTAGTTGG...GAGAAAGAGATTGTGTGTGTGTGTGTGTGTGCGTGTGTGCATGCGTGCGTGCGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR CAA 90 bp | GAAGTAGACACACTGCCTGTACTAGGCCATGTATTTCCTTTATCCTaGTGTTACAACATACAGTACCTACTGCTGCCGGGGTTCAACTCC | + |
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Preference number: 2 (lower is better) Translates to: EVDTLPVLGHVFPLS*CYNIQYLLLPGFNS Trigger: GGAGTTGAACCCCGGCAGCAGTAGGTACTGTATGTTGTAACACAAGGATAAAGGAAATACATGGCCTAGTACAGGCAGTGTGTCTACTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR GCA 90 bp | CCTGACACCCTCCCAAAGCATGGCCTAGTCTGCACATATTGTGTGTGTATCTGCATCTGCATTGTCAGCTaGCCTTCTTACAATGACTTT | + |
|
Preference number: 2 (lower is better) Translates to: PDTLPKHGLVCTYCVCICICIVS*PSYNDF Trigger: AAAGTCATTGTAAGAAGGGCAGCTGACAATGCAGAT...GCAGATACACACACAATATGTGCAGACTAGGCCATGCTTTGGGAGGGTGTCAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR TCA 90 bp | CGAAGTAGACACACTGCCTGTACTAGGCCATGTATTTCCTTTATCCTTGTGTTAAACAGGATTCTTTCCTaGCACCCTCCCAAAGCATGG | + |
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Preference number: 2 (lower is better) Translates to: RSRHTACTRPCISFILVLNRILS*HPPKAW Trigger: CCATGCTTTGGGAGGGTGTCAGGAAAGAATCCTGTT...TAACACAAGGATAAAGGAAATACATGGCCTAGTACAGGCAGTGTGTCTACTTCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR CCA 90 bp | TGCAGCTCTTATCAGCTTTCCAAGTTGCTGTACGTGCACGCACGCACGCATGCAAATATTAGTTTGGGTTaGACATGGATTTCAAAGTGC | + |
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Preference number: 2 (lower is better) Translates to: CSSYQLSKLLYVHARTHANISLG*TWISKC Trigger: GCACTTTGAAATCCATGTCCAACCCAAACTAATATT...TGCATGCGTGCGTGCGTGCACGTACAGCAACTTGGAAAGCTGATAAGAGCTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR TCA 90 bp | AGCCCACAAGCAGACAAAATAAACGAACCAGAGCAAACAGGATTCTTTCCTGACTTCATCACAAGGGTGTaGGGAAAACACTGTACCCAA | + |
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Preference number: 2 (lower is better) Translates to: SPQADKINEPEQTGFFPDFITRV*GKHCTQ Trigger: TTGGGTACAGTGTTTTCCTCACACCCTTGTGATGAA...GTCAGGAAAGAATCCTGTTTGCTCTGGTTCGTTTATTTTGTCTGCTTGTGGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR CCA 90 bp | ATAAACGAACCAGAGCAAACAGGATTCTTTCCTGACACCCTCCCAAAGCATGGCATTTTGTGGACTCTTTaGAAAGTGTTTTCAGAAGCC | + |
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Preference number: 2 (lower is better) Translates to: INEPEQTGFFPDTLPKHGILWTL*KVFSEA Trigger: GGCTTCTGAAAACACTTTCCAAAGAGTCCACAAAAT...GCCATGCTTTGGGAGGGTGTCAGGAAAGAATCCTGTTTGCTCTGGTTCGTTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR GCA 90 bp | TTGGACATGGATTTCAAAGTGCACTTAACATTCTGTATGTCCAAGTATGTGTGTACATACAGTACCTACTaGTGCCGGGGTTCAACTCCA | + |
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Preference number: 2 (lower is better) Translates to: LDMDFKVHLTFCMSKYVCTYSTY*CRGSTP Trigger: TGGAGTTGAACCCCGGCAGCAGTAGGTACTGTATGT...ACACACATACTTGGACATACAGAATGTTAAGTGCACTTTGAAATCCATGTCCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR CCA 90 bp | AGCCCACAAGCAGACAAAATAAACGAACCAGAGCAAACAGGATTCTTTCCTGACCAGTCACTAACAATTTaGCAAATCAAGCTGGCAAGA | + |
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Preference number: 2 (lower is better) Translates to: SPQADKINEPEQTGFFPDQSLTI*QIKLAR Trigger: TCTTGCCAGCTTGATTTGCCAAATTGTTAGTGACTG...GTCAGGAAAGAATCCTGTTTGCTCTGGTTCGTTTATTTTGTCTGCTTGTGGGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR CCA 90 bp | TTCAGAAGCCAACAAACCTTAAAACCTGAAGTTCTGAAGTCAGCCCACAAGCAGCAGTCACTAACAATTTaGCAAATCAAGCTGGCAAGA | + |
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Preference number: 2 (lower is better) Translates to: FRSQQTLKPEVLKSAHKQQSLTI*QIKLAR Trigger: TCTTGCCAGCTTGATTTGCCAAATTGTTAGTGACTG...CTGCTTGTGGGCTGACTTCAGAACTTCAGGTTTTAAGGTTTGTTGGCTTCTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR TCA 90 bp | GGAAAACACTGTACCCAACTACTTTCAGGTGACAGATTTCTTCTGTGTTACCTTCCTGTGCTCAGAATCTaGGCAATGAAATTGAAGACT | + |
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Preference number: 2 (lower is better) Translates to: GKHCTQLLSGDRFLLCYLPVLRI*AMKLKT Trigger: AGTCTTCAATTTCATTGCTCAGATTCTGAGCACAGG...AAGGTAACACAGAAGAAATCTGTCACCTGAAAGTAGTTGGGTACAGTGTTTTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215007.2 |
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| 3UTR-3UTR GCA 90 bp | TTCTGTATGTCCAAGTATGTGTGTAATGTCTCAAAACACCAGCCCACCCACTGCGATTTTAATAAACACTaGCTTTCTGCAGCTCTTATC | + |
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Preference number: 2 (lower is better) Translates to: FCMSKYVCNVSKHQPTHCDFNKH*LSAALI Trigger: GATAAGAGCTGCAGAAAGGCAGTGTTTATTAAAATC...GCAGTGGGTGGGCTGGTGTTTTGAGACATTACACACATACTTGGACATACAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR TCA 90 bp | TTAGTTTGGGTTGGACATGGATTTCAAAGTGCACTTAACATTCTGTATGTCCAATTCATCACAAGGGTGTaGGGAAAACACTGTACCCAA | + |
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Preference number: 2 (lower is better) Translates to: LVWVGHGFQSALNILYVQFITRV*GKHCTQ Trigger: TTGGGTACAGTGTTTTCCTCACACCCTTGTGATGAA...TTGGACATACAGAATGTTAAGTGCACTTTGAAATCCATGTCCAACCCAAACTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR GCA 90 bp | TTGGACATGGATTTCAAAGTGCACTTAACATTCTGTATGTCCAAGTATGTGTGTATCTGCATTGTCAGCTaGCCTTCTTACAATGACTTT | + |
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Preference number: 2 (lower is better) Translates to: LDMDFKVHLTFCMSKYVCICIVS*PSYNDF Trigger: AAAGTCATTGTAAGAAGGGCAGCTGACAATGCAGAT...ACACACATACTTGGACATACAGAATGTTAAGTGCACTTTGAAATCCATGTCCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR GCA 72 bp | TCTGCAGCTCTTATCAGCTTTCCAAGTTGCTGTACGTaGACGCACGCACGCATGCACACACGCACACACACA | + |
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Preference number: 3 (lower is better) Translates to: SAALISFPSCCT*THARMHTRTHT Trigger: TGTGTGTGTGCGTGTGTGCATGCGTGCGTGCGTGCACGTACAGCAACTTGGAAAGCTGATAAGAGCTGCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR TCA 72 bp | TCAGAAAACACAGCAGTCTACAGGACCAGGCCAGTGTaGGCAGCTCACCGTGCGTGTCACACCGTTTTAATG | + |
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Preference number: 3 (lower is better) Translates to: SENTAVYRTRPV*AAHRACHTVLM Trigger: CATTAAAACGGTGTGACACGCACGGTGAGCTGCTCACACTGGCCTGGTCCTGTAGACTGCTGTGTTTTCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000215007.2 |
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| 3UTR GCA 72 bp | AGTCTACAGGACCAGGCCAGTGTGAGCAGCTCACCGTaGGTGTCACACCGTTTTAATGAGCAATCACTATTT | + |
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Preference number: 3 (lower is better) Translates to: SLQDQASVSSSP*VSHRFNEQSLF Trigger: AAATAGTGATTGCTCATTAAAACGGTGTGACACGCACGGTGAGCTGCTCACACTGGCCTGGTCCTGTAGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215007.2 |
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| 3UTR GCA 72 bp | TTCTTTCCTGACACCCTCCCAAAGCATGGCCTAGTCTaGACATATTGTGTGTGTATCTGCATTGTCAGCTGC | + |
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Preference number: 3 (lower is better) Translates to: FFPDTLPKHGLV*TYCVCICIVSC Trigger: GCAGCTGACAATGCAGATACACACACAATATGTGCAGACTAGGCCATGCTTTGGGAGGGTGTCAGGAAAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR GCA 72 bp | TTCCTTTATCCTTGTGTTACAACATACAGTACCTACTaGTGCCGGGGTTCAACTCCATGGTACAGCACTTGC | + |
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Preference number: 3 (lower is better) Translates to: FLYPCVTTYSTY*CRGSTPWYSTC Trigger: GCAAGTGCTGTACCATGGAGTTGAACCCCGGCAGCAGTAGGTACTGTATGTTGTAACACAAGGATAAAGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR CAA 90 bp | ATAAACGAACCAGAGCAAACAGGATTCTTTCCTGACACCCTCCCAAAGCATGGCCCTAGTCTGCACATATaGTGTGTGTATCTGCATTGT | + |
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Preference number: 3 (lower is better) Translates to: INEPEQTGFFPDTLPKHGPSLHI*CVYLHC Trigger: ACAATGCAGATACACACACAATATGTGCAGACTAGG...GCCATGCTTTGGGAGGGTGTCAGGAAAGAATCCTGTTTGCTCTGGTTCGTTTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR CAA 90 bp | CCTGACACCCTCCCAAAGCATGGCCTAGTCTGCACATATTGTGTGTGTATCTGCAAAACACCCACTACATaGGACAAGATCAAGTCAATA | + |
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Preference number: 3 (lower is better) Translates to: PDTLPKHGLVCTYCVCICKTPTT*DKIKSI Trigger: TATTGACTTGATCTTGTCCAATGTAGTGGGTGTTTT...GCAGATACACACACAATATGTGCAGACTAGGCCATGCTTTGGGAGGGTGTCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215007.2 |
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| 3UTR TCA 72 bp | GCTGCCCTTCTTACAATGACTTTCATCACAAGGGTGTaGGGAAAACACTGTACCCAACTACTTTCAGGTGAC | + |
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Preference number: 3 (lower is better) Translates to: AALLTMTFITRV*GKHCTQLLSGD Trigger: GTCACCTGAAAGTAGTTGGGTACAGTGTTTTCCTCACACCCTTGTGATGAAAGTCATTGTAAGAAGGGCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR TCA 72 bp | CAAAATAAACGAACCAGAGCAAACAGGATTCTTTCCTaGCACCCTCCCAAAGCATGGCCTAGTCTGCACATA | + |
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Preference number: 3 (lower is better) Translates to: QNKRTRANRILS*HPPKAWPSLHI Trigger: TATGTGCAGACTAGGCCATGCTTTGGGAGGGTGTCAGGAAAGAATCCTGTTTGCTCTGGTTCGTTTATTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR GCA 72 bp | GTCTGCACATATTGTGTGTGTATCTGCATTGTCAGCTaGCCTTCTTACAATGACTTTCATCACAAGGGTGTG | + |
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Preference number: 3 (lower is better) Translates to: VCTYCVCICIVS*PSYNDFHHKGV Trigger: CACACCCTTGTGATGAAAGTCATTGTAAGAAGGGCAGCTGACAATGCAGATACACACACAATATGTGCAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR GCA 72 bp | AAGCATGGCCTAGTCTGCACATATTGTGTGTGTATCTaGATTGTCAGCTGCCCTTCTTACAATGACTTTCAT | + |
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Preference number: 3 (lower is better) Translates to: KHGLVCTYCVCI*IVSCPSYNDFH Trigger: ATGAAAGTCATTGTAAGAAGGGCAGCTGACAATGCAGATACACACACAATATGTGCAGACTAGGCCATGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR-3UTR CAA 90 bp | GAAGTCAGCCCACAAGCAGACAAAATAAACGAACCAGAGCAAACAGGATTCTTTCCTAGTCTGCACATATaGTGTGTGTATCTGCATTGT | + |
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Preference number: 3 (lower is better) Translates to: EVSPQADKINEPEQTGFFPSLHI*CVYLHC Trigger: ACAATGCAGATACACACACAATATGTGCAGACTAGG...AAAGAATCCTGTTTGCTCTGGTTCGTTTATTTTGTCTGCTTGTGGGCTGACTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR TCA 72 bp | TCTCAGAAAACTTACTATTACCCTGTGCTCAGAATCTaGGCAATGAAATTGAAGACTTACAGAATAAGGATT | + |
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Preference number: 3 (lower is better) Translates to: SQKTYYYPVLRI*AMKLKTYRIRI Trigger: AATCCTTATTCTGTAAGTCTTCAATTTCATTGCTCAGATTCTGAGCACAGGGTAATAGTAAGTTTTCTGAGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215007.2 |
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| 3UTR CCA 72 bp | ATACATATGACACCTTGTCTCTATGGAATATTAGTTTaGGTTGGACATGGATTTCAAAGTGCACTTAACATT | + |
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Preference number: 3 (lower is better) Translates to: IHMTPCLYGILV*VGHGFQSALNI Trigger: AATGTTAAGTGCACTTTGAAATCCATGTCCAACCCAAACTAATATTCCATAGAGACAAGGTGTCATATGTAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR CAA 72 bp | CTACTGCTGCCGGGGTTCAACTCCATGGTACAGCACTaGCTTGGCCTATGTGAGACCCTGCACGTAATGCCT | + |
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Preference number: 4 (lower is better) Translates to: LLLPGFNSMVQH*LGLCETLHVMP Trigger: AGGCATTACGTGCAGGGTCTCACATAGGCCAAGCAAGTGCTGTACCATGGAGTTGAACCCCGGCAGCAGTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| CDS-3UTR TCA 90 bp | TGCAGCTCTTATCAGCTTTCCAAGTTGCTGTACGTGCACGCACGCACGCATGCACTGACCTTCATCGTATaGAGAGAGAGAAAGGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: CSSYQLSKLLYVHARTHALTFIV*RERKVC Trigger: ACAGACCTTTCTCTCTCTTCATACGATGAAGGTCAG...TGCATGCGTGCGTGCGTGCACGTACAGCAACTTGGAAAGCTGATAAGAGCTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| CDS-3UTR TCA 90 bp | TTCTGTATGTCCAAGTATGTGTGTAATGTCTCAAAACACCAGCCCACCCACTGCCTGACCTTCATCGTATaGAGAGAGAGAAAGGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: FCMSKYVCNVSKHQPTHCLTFIV*RERKVC Trigger: ACAGACCTTTCTCTCTCTTCATACGATGAAGGTCAG...GCAGTGGGTGGGCTGGTGTTTTGAGACATTACACACATACTTGGACATACAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| CDS-3UTR CCA 90 bp | ATAAACGAACCAGAGCAAACAGGATTCTTTCCTGACACCCTCCCAAAGCATGGCTGTGGATCAAGTGAATaGACATCTTTGTATTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: INEPEQTGFFPDTLPKHGCGSSE*TSLYFL Trigger: GAGGAAATACAAAGATGTCCATTCACTTGATCCACA...GCCATGCTTTGGGAGGGTGTCAGGAAAGAATCCTGTTTGCTCTGGTTCGTTTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| CDS-3UTR GCA 90 bp | CAAGGGTGTGAGGAAAACACTGTACCCAACTACTTTCAGGTGACAGATTTCTTCTCTTTGTATTTCCTCTaGTCTTCAGCTTGTACAACC | + |
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Preference number: 4 (lower is better) Translates to: QGCEENTVPNYFQVTDFFSLYFL*SSACTT Trigger: GGTTGTACAAGCTGAAGAGCAGAGGAAATACAAAGA...GAAGAAATCTGTCACCTGAAAGTAGTTGGGTACAGTGTTTTCCTCACACCCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| CDS-3UTR GCA 90 bp | GAAAGTGTTTTCAGAAGCCAACAAACCTTAAAACCTGAAGTTCTGAAGTCAGCCTCTTTGTATTTCCTCTaGTCTTCAGCTTGTACAACC | + |
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Preference number: 4 (lower is better) Translates to: ESVFRSQQTLKPEVLKSASLYFL*SSACTT Trigger: GGTTGTACAAGCTGAAGAGCAGAGGAAATACAAAGA...GGCTGACTTCAGAACTTCAGGTTTTAAGGTTTGTTGGCTTCTGAAAACACTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| CDS-3UTR CCA 90 bp | GGAAAACACTGTACCCAACTACTTTCAGGTGACAGATTTCTTCTGTGTTACCTTTGTGGATCAAGTGAATaGACATCTTTGTATTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: GKHCTQLLSGDRFLLCYLCGSSE*TSLYFL Trigger: GAGGAAATACAAAGATGTCCATTCACTTGATCCACA...AAGGTAACACAGAAGAAATCTGTCACCTGAAAGTAGTTGGGTACAGTGTTTTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060251.8 ENSMUST00000215007.2 |
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| 3UTR CAA 72 bp | ACTATTTACCAGGAAATTTTAAAAACACCCACTACATaGGACAAGATCAAGTCAATAAACCGTGATGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: TIYQEILKTPTT*DKIKSINRDAS Trigger: ACTGGCATCACGGTTTATTGACTTGATCTTGTCCAATGTAGTGGGTGTTTTTAAAATTTCCTGGTAAATAGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000215007.2 |
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