RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HIC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050240

Ensembl transcript IDs: ENSMUST00000090190.14, ENSMUST00000232082.2

Found 239 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGGAGGCTGGGCCAGAGGGGCTGCCAGGAGCCTCATGTCAGACTTTaGGGCTCAACCCTCCCACCATGCTTCCGTGGGTTCCCAAGTGGC +
Preference number: 1 (lower is better)
Translates to: RRLGQRGCQEPHVRL*GSTLPPCFRGFPSG
Trigger: GCCACTTGGGAACCCACGGAAGCATGGTGGGAGGGTTGAGCCCCAAAGTCTGACATGAGGCTCCTGGCAGCCCCTCTGGCCCAGCCTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 90 bp CCTCCCGGCTGCCCAGGGTTTCCCCTACTCAGGAAGGCAGCAGTCTaGCTGCTGACAGATTGCCCGGCAGATCGCACTCCTGCACAAGGA +
Preference number: 1 (lower is better)
Translates to: PPGCPGFPLLRKAAV*LLTDCPADRTPAQG
Trigger: TCCTTGTGCAGGAGTGCGATCTGCCGGGCAATCTGTCAGCAGGCAGACTGCTGCCTTCCTGAGTAGGGGAAACCCTGGGCAGCCGGGAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR TCA 90 bp CCAACCTGCAGGAAAGGAACCAACCAGGCCCCACTGGCACCCACATaGTGGACTCCCACCGGCTCTTCAGCAGCTCCTTCAGGGAGCTGG +
Preference number: 1 (lower is better)
Translates to: PTCRKGTNQAPLAPT*WTPTGSSAAPSGSW
Trigger: CCAGCTCCCTGAAGGAGCTGCTGAAGAGCCGGTGGGAGTCCATCATGTGGGTGCCAGTGGGGCCTGGTTGGTTCCTTTCCTGCAGGTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR TCA 90 bp GCTGCCCAGGGTTTCCCCTACTCAGGAAGGCAGCAGTCTGCCTGCTaGCAGATTGCCCGGCAGATCGCACTCCTGCACAAGGACCTGAGG +
Preference number: 1 (lower is better)
Translates to: AAQGFPYSGRQQSAC*QIARQIALLHKDLR
Trigger: CCTCAGGTCCTTGTGCAGGAGTGCGATCTGCCGGGCAATCTGTCAGCAGGCAGACTGCTGCCTTCCTGAGTAGGGGAAACCCTGGGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 90 bp CCCACCGGCTCTTCAGCAGCTCCTTCAGGGAGCTGGAAAGCCCAGTaGGCCCAGGGAGGTAGAATAGTCACCAGCACCACATGCATAGGG +
Preference number: 1 (lower is better)
Translates to: PTGSSAAPSGSWKAQ*AQGGRIVTSTTCIG
Trigger: CCCTATGCATGTGGTGCTGGTGACTATTCTACCTCCCTGGGCCCACTGGGCTTTCCAGCTCCCTGAAGGAGCTGCTGAAGAGCCGGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 90 bp GGGTCCTGGGCAGCACGGATCCACAGCTCCCACCCTTTCCTGGGCTaGAATGTCAGACTGAGGTCGGGTCCCTCTCTATCCCTCATTCCT +
Preference number: 1 (lower is better)
Translates to: GSWAARIHSSHPFLG*NVRLRSGPSLSLIP
Trigger: AGGAATGAGGGATAGAGAGGGACCCGACCTCAGTCTGACATTCCAGCCCAGGAAAGGGTGGGAGCTGTGGATCCGTGCTGCCCAGGACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 90 bp CAGTGCCAGCTAGCAGTTGCCACCCCAGCTCACAGAGAAAGGAACTaGCACCCAGCACCAGCACCCCAACACCAGAGTCACACTGCACTG +
Preference number: 1 (lower is better)
Translates to: QCQLAVATPAHRERN*HPAPAPQHQSHTAL
Trigger: CAGTGCAGTGTGACTCTGGTGTTGGGGTGCTGGTGCTGGGTGGCAGTTCCTTTCTCTGTGAGCTGGGGTGGCAACTGCTAGCTGGCACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 90 bp GGTAGGCAATGGGTCACCCTGACTGTTCCAGTGCCAGCTAGCAGTTaGCACCCCAGCTCACAGAGAAAGGAACTGCCACCCAGCACCAGC +
Preference number: 1 (lower is better)
Translates to: GRQWVTLTVPVPASS*HPSSQRKELPPSTS
Trigger: GCTGGTGCTGGGTGGCAGTTCCTTTCTCTGTGAGCTGGGGTGGCAACTGCTAGCTGGCACTGGAACAGTCAGGGTGACCCATTGCCTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 90 bp CACACACAGCATGCCCTGAGCAGCAGACATCTCTTCAGAGAACACTaGGTCCCACAAGGGGCTTGGGCCAGCCCAAGCCCAGGTTACTCC +
Preference number: 1 (lower is better)
Translates to: HTQHALSSRHLFREH*VPQGAWASPSPGYS
Trigger: GGAGTAACCTGGGCTTGGGCTGGCCCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGATGTCTGCTGCTCAGGGCATGCTGTGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 90 bp GCCTTAAGTGCTGGTAGGTGGGTGGGTGGGGAGCAGAGGCCAGCATaGCCTGCTATTTCACTGGGTAGAATAGTGCCTGGGCTGCACTCA +
Preference number: 1 (lower is better)
Translates to: ALSAGRWVGGEQRPA*PAISLGRIVPGLHS
Trigger: TGAGTGCAGCCCAGGCACTATTCTACCCAGTGAAATAGCAGGGCATGCTGGCCTCTGCTCCCCACCCACCCACCTACCAGCACTTAAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR CCA 90 bp TTGCAACCTTGGAAGAGCCCTTGCAGTAGCTCGGTCCGGTGGAAATaGGCACTGGCAGAGCCAGGCCTGCTCCACTGGATTGCCCTAAGT +
Preference number: 1 (lower is better)
Translates to: LQPWKSPCSSSVRWK*ALAEPGLLHWIALS
Trigger: ACTTAGGGCAATCCAGTGGAGCAGGCCTGGCTCTGCCAGTGCCCATTTCCACCGGACCGAGCTACTGCAAGGGCTCTTCCAAGGTTGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 90 bp TCCTTTTTGCAACCTTGGAAGAGCCCTTGCAGTAGCTCGGTCCGGTaGAAATGGGCACTGGCAGAGCCAGGCCTGCTCCACTGGATTGCC +
Preference number: 1 (lower is better)
Translates to: SFLQPWKSPCSSSVR*KWALAEPGLLHWIA
Trigger: GGCAATCCAGTGGAGCAGGCCTGGCTCTGCCAGTGCCCATTTCCACCGGACCGAGCTACTGCAAGGGCTCTTCCAAGGTTGCAAAAAGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR TCA 90 bp CCTGCTGACAGATTGCCCGGCAGATCGCACTCCTGCACAAGGACCTaGGGTCCAGTGAATACTGATAGTGTGGACAGCAGGTGGGGACCT +
Preference number: 1 (lower is better)
Translates to: PADRLPGRSHSCTRT*GPVNTDSVDSRWGP
Trigger: AGGTCCCCACCTGCTGTCCACACTATCAGTATTCACTGGACCTCAGGTCCTTGTGCAGGAGTGCGATCTGCCGGGCAATCTGTCAGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR TCA 90 bp CACGGATCCACAGCTCCCACCCTTTCCTGGGCTGGAATGTCAGACTaGGGTCGGGTCCCTCTCTATCCCTCATTCCTGGCATCCATTTCA +
Preference number: 1 (lower is better)
Translates to: HGSTAPTLSWAGMSD*GRVPLYPSFLASIS
Trigger: TGAAATGGATGCCAGGAATGAGGGATAGAGAGGGACCCGACCTCAGTCTGACATTCCAGCCCAGGAAAGGGTGGGAGCTGTGGATCCGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 90 bp AAGGAACTGCCACCCAGCACCAGCACCCCAACACCAGAGTCACACTaGACTGCAAAGACACAAGCACACATGCACACACACAGCCGAGGT +
Preference number: 1 (lower is better)
Translates to: KELPPSTSTPTPESH*TAKTQAHMHTHSRG
Trigger: ACCTCGGCTGTGTGTGTGCATGTGTGCTTGTGTCTTTGCAGTGCAGTGTGACTCTGGTGTTGGGGTGCTGGTGCTGGGTGGCAGTTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 90 bp AAAAGGGAGCTGCTCCTTCCTAATGGCTTCTGCCTGTTACTCAGATaGCCAGCACCTGCCCCACACACAGCATGCCCTGAGCAGCAGACA +
Preference number: 1 (lower is better)
Translates to: KRELLLPNGFCLLLR*PAPAPHTACPEQQT
Trigger: TGTCTGCTGCTCAGGGCATGCTGTGTGTGGGGCAGGTGCTGGGCATCTGAGTAACAGGCAGAAGCCATTAGGAAGGAGCAGCTCCCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 90 bp GAGAGCTGGCTCAGTACACAGGCACTATGTGGAGGTTTGGCCAGGTaGCCTCACTCCCACACCCAACACTCTCTGGGTACTGAATGTAGG +
Preference number: 1 (lower is better)
Translates to: ESWLSTQALCGGLAR*PHSHTQHSLGTECR
Trigger: CCTACATTCAGTACCCAGAGAGTGTTGGGTGTGGGAGTGAGGGCACCTGGCCAAACCTCCACATAGTGCCTGTGTACTGAGCCAGCTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR GCA 90 bp GAGCAAGGAAGTGAAGCATCTGTGCATAAGCAACACACACGCACATaGGCGCGCACACACACACACACACACACACACACACACACGCGC +
Preference number: 1 (lower is better)
Translates to: EQGSEASVHKQHTRT*ARTHTHTHTHTHTR
Trigger: GCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCATGTGCGTGTGTGTTGCTTATGCACAGATGCTTCACTTCCTTGCTC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 90 bp GAACACAGACACTCTTGGTCTTGCCTTGCCCCTTGCAGAAGCCCATaGAAACATCTGAGGCTGGCTGACACACCCATGGAAGGGTTAGCT +
Preference number: 1 (lower is better)
Translates to: EHRHSWSCLAPCRSP*KHLRLADTPMEGLA
Trigger: AGCTAACCCTTCCATGGGTGTGTCAGCCAGCCTCAGATGTTTGCATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR GCA 90 bp AGGTCTATAGGCCCATCTGGGACAGAACACAGACACTCTTGGTCTTaGCTTGCCCCTTGCAGAAGCCCATGCAAACATCTGAGGCTGGCT +
Preference number: 1 (lower is better)
Translates to: RSIGPSGTEHRHSWS*LAPCRSPCKHLRLA
Trigger: AGCCAGCCTCAGATGTTTGCATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR CCA 90 bp AGCAGCAGACATCTCTTCAGAGAACACTGGGTCCCACAAGGGGCTTaGGCCAGCCCAAGCCCAGGTTACTCCCACTACAGAAAAACAAAA +
Preference number: 1 (lower is better)
Translates to: SSRHLFREHWVPQGA*ASPSPGYSHYRKTK
Trigger: TTTTGTTTTTCTGTAGTGGGAGTAACCTGGGCTTGGGCTGGCCCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGATGTCTGCTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR TCA 90 bp ACAGAGAACTGTTCGCTGCCTTGGCCTCCTATGGCCTGGTTTCCATaGGGCTCTTCTATCTGCACACACACACAGACACACACAGAGACA +
Preference number: 1 (lower is better)
Translates to: TENCSLPWPPMAWFP*GSSICTHTQTHTET
Trigger: TGTCTCTGTGTGTGTCTGTGTGTGTGTGCAGATAGAAGAGCCTCATGGAAACCAGGCCATAGGAGGCCAAGGCAGCGAACAGTTCTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR CCA 90 bp TCGGTCCGGTGGAAATGGGCACTGGCAGAGCCAGGCCTGCTCCACTaGATTGCCCTAAGTCTGAGAAATAAATACATTCATCACTGCACA +
Preference number: 1 (lower is better)
Translates to: SVRWKWALAEPGLLH*IALSLRNKYIHHCT
Trigger: TGTGCAGTGATGAATGTATTTATTTCTCAGACTTAGGGCAATCCAGTGGAGCAGGCCTGGCTCTGCCAGTGCCCATTTCCACCGGACCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR TCA 90 bp AGTACCGATGGCTCTGGCACCGAATCTAGCCTCCCCTCCACCCTCTaGAACTTCAGACCTTCCAGTTCCACATCTCAAAAAGGTATATGG +
Preference number: 1 (lower is better)
Translates to: STDGSGTESSLPSTL*NFRPSSSTSQKGIW
Trigger: CCATATACCTTTTTGAGATGTGGAACTGGAAGGTCTGAAGTTTCAGAGGGTGGAGGGGAGGCTAGATTCGGTGCCAGAGCCATCGGTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 90 bp ATGATAAGGTCTATAGGCCCATCTGGGACAGAACACAGACACTCTTaGTCTTGCCTTGCCCCTTGCAGAAGCCCATGCAAACATCTGAGG +
Preference number: 1 (lower is better)
Translates to: MIRSIGPSGTEHRHS*SCLAPCRSPCKHLR
Trigger: CCTCAGATGTTTGCATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGACCTTATCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR TCA 90 bp ACGGAAAACACACTTCCTGGGCCACATGAGGTCAGGAGTCACAGTTaGGGTGTATGGCTATGCTGCAAGTCTGAGATTCTTATGTGTTCA +
Preference number: 1 (lower is better)
Translates to: TENTLPGPHEVRSHS*GVWLCCKSEILMCS
Trigger: TGAACACATAAGAATCTCAGACTTGCAGCATAGCCATACACCTCAACTGTGACTCCTGACCTCATGTGGCCCAGGAAGTGTGTTTTCCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR GCA 90 bp AACCTTGGAAGAGCCCTTGCAGTAGCTCGGTCCGGTGGAAATGGGCACTGGCAGCTGGGCCAGAGGGGCTaGCAGGAGCCTCATGTCAGA +
Preference number: 2 (lower is better)
Translates to: NLGRALAVARSGGNGHWQLGQRG*QEPHVR
Trigger: TCTGACATGAGGCTCCTGGCAGCCCCTCTGGCCCAG...CTGCCAGTGCCCATTTCCACCGGACCGAGCTACTGCAAGGGCTCTTCCAAGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR CCA 90 bp CTGCAGATGAGGGTACCTACAGCCTGGGAGGCCACACAGACCTTGTGTCCTAGGGCTCCTTCAGGGAGCTaGAAAGCCCAGTGGGCCCAG +
Preference number: 2 (lower is better)
Translates to: LQMRVPTAWEATQTLCPRAPSGS*KAQWAQ
Trigger: CTGGGCCCACTGGGCTTTCCAGCTCCCTGAAGGAGC...CCTAGGACACAAGGTCTGTGTGGCCTCCCAGGCTGTAGGTACCCTCATCTGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR TCA 90 bp GGACCAGACTCCAGTCAGACCCTTCTGCTGCCCGGGGTAGGGTACGTGCATGACATTCCCAGTGAGGGCTaGTGGAGAGCTGGCTCAGTA +
Preference number: 2 (lower is better)
Translates to: GPDSSQTLLLPGVGYVHDIPSEG*WRAGSV
Trigger: TACTGAGCCAGCTCTCCATCAGCCCTCACTGGGAAT...GTCATGCACGTACCCTACCCCGGGCAGCAGAAGGGTCTGACTGGAGTCTGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR GCA 90 bp AGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGAGGTTTGGCCAGCAGATGCCCAGCACCTaGCCCACACACAGCATGCCC +
Preference number: 2 (lower is better)
Translates to: RADGELAQYTGTMWRFGQQMPST*PTHSMP
Trigger: GGGCATGCTGTGTGTGGGGCAGGTGCTGGGCATCTG...CTGGCCAAACCTCCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR CCA 90 bp GGACCAGACTCCAGTCAGACCCTTCTGCTGCCCGGGGTAGGGTACGTGCATGACCTCTTCAGAGAACACTaGGTCCCACAAGGGGCTTGG +
Preference number: 2 (lower is better)
Translates to: GPDSSQTLLLPGVGYVHDLFREH*VPQGAW
Trigger: CCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAG...GTCATGCACGTACCCTACCCCGGGCAGCAGAAGGGTCTGACTGGAGTCTGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR GCA 90 bp AACCTTGGAAGAGCCCTTGCAGTAGCTCGGTCCGGTGGAAATGGGCACTGGCAGGTGCCAGCTAGCAGTTaGCACCCCAGCTCACAGAGA +
Preference number: 2 (lower is better)
Translates to: NLGRALAVARSGGNGHWQVPASS*HPSSQR
Trigger: TCTCTGTGAGCTGGGGTGGCAACTGCTAGCTGGCAC...CTGCCAGTGCCCATTTCCACCGGACCGAGCTACTGCAAGGGCTCTTCCAAGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR CCA 90 bp AGCAGACATCTCTTCAGAGAACACTGGGTCCCACAAGGGGCTTGGGCCAGCCCAAGCTGGAAAGCCCAGTaGGCCCAGGGAGGTAGAATA +
Preference number: 2 (lower is better)
Translates to: SRHLFREHWVPQGAWASPSWKAQ*AQGGRI
Trigger: TATTCTACCTCCCTGGGCCCACTGGGCTTTCCAGCT...TGGGCTGGCCCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGATGTCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR TCA 90 bp CTGGGACAGAACACAGACACTCTTGGTCTTGCCTTGCCCCTTGCAGAAGCCCATGGCAATGGGTCACCCTaGCTGTTCCAGTGCCAGCTA +
Preference number: 2 (lower is better)
Translates to: LGQNTDTLGLALPLAEAHGNGSP*LFQCQL
Trigger: TAGCTGGCACTGGAACAGTCAGGGTGACCCATTGCC...ATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR GCA 90 bp CTGAATGTAGGCTCCAGGGTCTCTGAGGGGTGGAGGCAAGCAGGGGATGACTCTGTCACCAGCACCACATaGATAGGGCTAGACTGGTCA +
Preference number: 2 (lower is better)
Translates to: LNVGSRVSEGWRQAGDDSVTSTT*IGLDWS
Trigger: TGACCAGTCTAGCCCTATGCATGTGGTGCTGGTGAC...AGAGTCATCCCCTGCTTGCCTCCACCCCTCAGAGACCCTGGAGCCTACATTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR GCA 90 bp CACAAGGCTCATGGGCAGGGCCAAATCCACCCCTTGGGTTCAGCTAGGAAGCCTAGACACTCTTGGTCTTaGCTTGCCCCTTGCAGAAGC +
Preference number: 2 (lower is better)
Translates to: HKAHGQGQIHPLGSARKPRHSWS*LAPCRS
Trigger: GCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCT...AGGCTTCCTAGCTGAACCCAAGGGGTGGATTTGGCCCTGCCCATGAGCCTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR CCA 90 bp CACAAGGCTCATGGGCAGGGCCAAATCCACCCCTTGGGTTCAGCTAGGAAGCCTAACTGTTCGCTGCCTTaGCCTCCTATGGCCTGGTTT +
Preference number: 2 (lower is better)
Translates to: HKAHGQGQIHPLGSARKPNCSLP*PPMAWF
Trigger: AAACCAGGCCATAGGAGGCCAAGGCAGCGAACAGTT...AGGCTTCCTAGCTGAACCCAAGGGGTGGATTTGGCCCTGCCCATGAGCCTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CAA 90 bp GAGCAGCAGACATCTCTTCAGAGAACACTGGGTCCCACAAGGGGCTaGGGCCAGCCCAAGCCCAGGTTACTCCCACTACAGAAAAACAAA +
Preference number: 2 (lower is better)
Translates to: EQQTSLQRTLGPTRG*GQPKPRLLPLQKNK
Trigger: TTTGTTTTTCTGTAGTGGGAGTAACCTGGGCTTGGGCTGGCCCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGATGTCTGCTGCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CAA 90 bp AAGGTCTATAGGCCCATCTGGGACAGAACACAGACACTCTTGGTCTaGCCTTGCCCCTTGCAGAAGCCCATGCAAACATCTGAGGCTGGC +
Preference number: 2 (lower is better)
Translates to: KVYRPIWDRTQTLLV*PCPLQKPMQTSEAG
Trigger: GCCAGCCTCAGATGTTTGCATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR CAA 90 bp AGGTTCAGTAACATTGGCCCCATCGTGACTGGGGAAAGGAAGACCTaGGTCCCTTTCATCGAGCACAGCAGGGTTTCGAGAGCCTGTCCA +
Preference number: 2 (lower is better)
Translates to: RFSNIGPIVTGERKT*VPFIEHSRVSRACP
Trigger: TGGACAGGCTCTCGAAACCCTGCTGTGCTCGATGAAAGGGACCAAGGTCTTCCTTTCCCCAGTCACGATGGGGCCAATGTTACTGAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR CCA 90 bp AGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGAGGTTTGGCCAGGTCTATAGGCCCATCTaGGACAGAACACAGACACTC +
Preference number: 2 (lower is better)
Translates to: RADGELAQYTGTMWRFGQVYRPI*DRTQTL
Trigger: GAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGAC...CTGGCCAAACCTCCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR-3UTR GCA 90 bp AGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGAGGTTTGGCCAGACACCAGAGTCACACTaGACTGCAAAGACACAAGCA +
Preference number: 2 (lower is better)
Translates to: RADGELAQYTGTMWRFGQTPESH*TAKTQA
Trigger: TGCTTGTGTCTTTGCAGTGCAGTGTGACTCTGGTGT...CTGGCCAAACCTCCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR CCA 90 bp GCTCATAAAAGGGAGCTGCTCCTTCCTAATGGCTTCTGCCTGTTACTCAGATGCCCGTGGGTTCCCAAGTaGCAAGTCTGTAGAGGGCTC +
Preference number: 2 (lower is better)
Translates to: AHKRELLLPNGFCLLLRCPWVPK*QVCRGL
Trigger: GAGCCCTCTACAGACTTGCCACTTGGGAACCCACGG...GCATCTGAGTAACAGGCAGAAGCCATTAGGAAGGAGCAGCTCCCTTTTATGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CAA 90 bp GTCACCAGCACCACATGCATAGGGCTAGACTGGTCAGCTTCTCTCTaGGCTTCCCTTGGTATACTGTTGATTAAAGCTCTGGGCGTGAGG +
Preference number: 2 (lower is better)
Translates to: VTSTTCIGLDWSASL*ASLGILLIKALGVR
Trigger: CCTCACGCCCAGAGCTTTAATCAACAGTATACCAAGGGAAGCCAAGAGAGAAGCTGACCAGTCTAGCCCTATGCATGTGGTGCTGGTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR CCA 90 bp GGAGTCACAGTTGAGGTGTATGGCTATGCTGCAAGTCTGAGATTCTTATGTGTTCTGGAGGGGACAGGATaGGGTGGGCTCACTTCCACC +
Preference number: 2 (lower is better)
Translates to: GVTVEVYGYAASLRFLCVLEGTG*GGLTST
Trigger: GGTGGAAGTGAGCCCACCCCATCCTGTCCCCTCCAG...AACACATAAGAATCTCAGACTTGCAGCATAGCCATACACCTCAACTGTGACTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CAA 90 bp CATGATAAGGTCTATAGGCCCATCTGGGACAGAACACAGACACTCTaGGTCTTGCCTTGCCCCTTGCAGAAGCCCATGCAAACATCTGAG +
Preference number: 2 (lower is better)
Translates to: HDKVYRPIWDRTQTL*VLPCPLQKPMQTSE
Trigger: CTCAGATGTTTGCATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGACCTTATCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR-3UTR GCA 90 bp GTGGCTCAGCCTCAACTGTACTGGGTATTGAATTCAAGAGGTAGCAAAGGTCAGGCACGCACACACAGATaGGTGTGCACACGAGAGCAA +
Preference number: 2 (lower is better)
Translates to: VAQPQLYWVLNSRGSKGQARTHR*VCTREQ
Trigger: TTGCTCTCGTGTGCACACGCATCTGTGTGTGCGTGC...CTGACCTTTGCTACCTCTTGAATTCAATACCCAGTACAGTTGAGGCTGAGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR GCA 90 bp AAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATCTTGGCCCAGCCCAACCTaGAGGAAAGGAACCAACCAG +
Preference number: 2 (lower is better)
Translates to: KGKRIQVWIPPIPTTLKSWPSPT*RKGTNQ
Trigger: CTGGTTGGTTCCTTTCCTGCAGGTTGGGCTGGGCCA...AGATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CAA 90 bp CAGTTCCAATTAAATGAAACAGATACCCCATCCCTCCTGAGGTATTaGCAAATGGGATGGATAGAGCCCAACCTGGGGCTCCTGGAGGAA +
Preference number: 2 (lower is better)
Translates to: QFQLNETDTPSLLRY*QMGWIEPNLGLLEE
Trigger: TTCCTCCAGGAGCCCCAGGTTGGGCTCTATCCATCCCATTTGCAAATACCTCAGGAGGGATGGGGTATCTGTTTCATTTAATTGGAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR TCA 90 bp AGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGAGGTTTGGCCAGGAAAATGAAAAGCCATaGAGCAACATGATAAGGTCT +
Preference number: 2 (lower is better)
Translates to: RADGELAQYTGTMWRFGQENEKP*SNMIRS
Trigger: AGACCTTATCATGTTGCTTCATGGCTTTTCATTTTC...CTGGCCAAACCTCCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR-3UTR CCA 90 bp AGCAGACATCTCTTCAGAGAACACTGGGTCCCACAAGGGGCTTGGGCCAGCCCAACAAGGGACATTCCTTaGAAATTATGGAAAAGCATA +
Preference number: 2 (lower is better)
Translates to: SRHLFREHWVPQGAWASPTRDIP*KLWKSI
Trigger: TATGCTTTTCCATAATTTCCAAGGAATGTCCCTTGT...TGGGCTGGCCCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGATGTCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR CCA 90 bp ACAAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATCAGAGAGGTAGGCAATaGGTCACCCTGACTGTTCCA +
Preference number: 2 (lower is better)
Translates to: TKERESKCGSHPSQQPLNQRGRQ*VTLTVP
Trigger: TGGAACAGTCAGGGTGACCCATTGCCTACCTCTCTG...ATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR GCA 90 bp ACAAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATAGAGGGCTCTTTAGTTaGAGAGAGGTAGGCAATGGG +
Preference number: 2 (lower is better)
Translates to: TKERESKCGSHPSQQPLNRGLFS*REVGNG
Trigger: CCCATTGCCTACCTCTCTGCAACTAAAGAGCCCTCT...ATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR CCA 90 bp GGAGTCACAGTTGAGGTGTATGGCTATGCTGCAAGTCTGAGATTCTTATGTGTTTGCATAGGGCTAGACTaGTCAGCTTCTCTCTTGGCT +
Preference number: 2 (lower is better)
Translates to: GVTVEVYGYAASLRFLCVCIGLD*SASLLA
Trigger: AGCCAAGAGAGAAGCTGACCAGTCTAGCCCTATGCA...AACACATAAGAATCTCAGACTTGCAGCATAGCCATACACCTCAACTGTGACTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CAA 90 bp GCAAGTCTGAGATTCTTATGTGTTCATAAGTTCATCTTTTCCTTTTaGCAACCTTGGAAGAGCCCTTGCAGTAGCTCGGTCCGGTGGAAA +
Preference number: 2 (lower is better)
Translates to: ASLRFLCVHKFIFSF*QPWKSPCSSSVRWK
Trigger: TTTCCACCGGACCGAGCTACTGCAAGGGCTCTTCCAAGGTTGCAAAAAGGAAAAGATGAACTTATGAACACATAAGAATCTCAGACTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CAA 90 bp GTGTGGTTCTCAATAAAAATAAGTACCTCTAACAAGGGACATTCCTaGGAAATTATGGAAAAGCATATTCTCCTGAGGAAGCCCAGGCAG +
Preference number: 2 (lower is better)
Translates to: VWFSIKISTSNKGHS*EIMEKHILLRKPRQ
Trigger: CTGCCTGGGCTTCCTCAGGAGAATATGCTTTTCCATAATTTCCAAGGAATGTCCCTTGTTAGAGGTACTTATTTTTATTGAGAACCACAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp GGCCAGAGGGGCTGCCAGGAGCCTCATGTCAGACTTTaGGGCTCAACCCTCCCACCATGCTTCCGTGGGTTC +
Preference number: 3 (lower is better)
Translates to: GQRGCQEPHVRL*GSTLPPCFRGF
Trigger: GAACCCACGGAAGCATGGTGGGAGGGTTGAGCCCCAAAGTCTGACATGAGGCTCCTGGCAGCCCCTCTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 72 bp TTTTGGCCACAGGAAACCCTGTGGCCCAGCCCAACCTaGAGGAAAGGAACCAACCAGGCCCCACTGGCACCC +
Preference number: 3 (lower is better)
Translates to: FWPQETLWPSPT*RKGTNQAPLAP
Trigger: GGGTGCCAGTGGGGCCTGGTTGGTTCCTTTCCTGCAGGTTGGGCTGGGCCACAGGGTTTCCTGTGGCCAAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp CAACCTTGGAAGAGCCCTTGCAGTAGCTCGGTCCGGTaGAAATGGGCACTGGCAGAGCCAGGCCTGCTCCAC +
Preference number: 3 (lower is better)
Translates to: QPWKSPCSSSVR*KWALAEPGLLH
Trigger: GTGGAGCAGGCCTGGCTCTGCCAGTGCCCATTTCCACCGGACCGAGCTACTGCAAGGGCTCTTCCAAGGTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR CAA 90 bp GGACCAGACTCCAGTCAGACCCTTCTGCTGCCCGGGGTAGGGTACGTGCATGACCTCCAGGCACCACTTTaGGCCACAGGAAACCCTGTG +
Preference number: 3 (lower is better)
Translates to: GPDSSQTLLLPGVGYVHDLQAPL*ATGNPV
Trigger: CACAGGGTTTCCTGTGGCCAAAAGTGGTGCCTGGAG...GTCATGCACGTACCCTACCCCGGGCAGCAGAAGGGTCTGACTGGAGTCTGGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 72 bp ACACAAGCACACATGCACACACACAGCCGAGGTCCCTaGCAGCTAGGCCTGCTCCAGGCACCACTTTTGGCC +
Preference number: 3 (lower is better)
Translates to: TQAHMHTHSRGP*QLGLLQAPLLA
Trigger: GGCCAAAAGTGGTGCCTGGAGCAGGCCTAGCTGGCAGGGACCTCGGCTGTGTGTGTGCATGTGTGCTTGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 72 bp TGCCCAGGGTTTCCCCTACTCAGGAAGGCAGCAGTCTaGCTGCTGACAGATTGCCCGGCAGATCGCACTCCT +
Preference number: 3 (lower is better)
Translates to: CPGFPLLRKAAV*LLTDCPADRTP
Trigger: AGGAGTGCGATCTGCCGGGCAATCTGTCAGCAGGCAGACTGCTGCCTTCCTGAGTAGGGGAAACCCTGGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp CTCAACCCTCCCACCATGCTTCCGTGGGTTCCCAAGTaGCAAGTCTGTAGAGGGCTCCCACGGGTCTTTGGC +
Preference number: 3 (lower is better)
Translates to: LNPPTMLPWVPK*QVCRGLPRVFG
Trigger: GCCAAAGACCCGTGGGAGCCCTCTACAGACTTGCCACTTGGGAACCCACGGAAGCATGGTGGGAGGGTTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp ACTCCCACCGGCTCTTCAGCAGCTCCTTCAGGGAGCTaGAAAGCCCAGTGGGCCCAGGGAGGTAGAATAGTC +
Preference number: 3 (lower is better)
Translates to: TPTGSSAAPSGS*KAQWAQGGRIV
Trigger: GACTATTCTACCTCCCTGGGCCCACTGGGCTTTCCAGCTCCCTGAAGGAGCTGCTGAAGAGCCGGTGGGAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp CATGCCCTGAGCAGCAGACATCTCTTCAGAGAACACTaGGTCCCACAAGGGGCTTGGGCCAGCCCAAGCCCA +
Preference number: 3 (lower is better)
Translates to: HALSSRHLFREH*VPQGAWASPSP
Trigger: TGGGCTTGGGCTGGCCCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGATGTCTGCTGCTCAGGGCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp GCAGCACGGATCCACAGCTCCCACCCTTTCCTGGGCTaGAATGTCAGACTGAGGTCGGGTCCCTCTCTATCC +
Preference number: 3 (lower is better)
Translates to: AARIHSSHPFLG*NVRLRSGPSLS
Trigger: GGATAGAGAGGGACCCGACCTCAGTCTGACATTCCAGCCCAGGAAAGGGTGGGAGCTGTGGATCCGTGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR CAA 90 bp TCTCTTCAGAGAACACTGGGTCCCACAAGGGGCTTGGGCCAGCCCAAGCCCAGGGAATCAGGGAAGCCTTaGGGCAAGAAGGGCTTCTGG +
Preference number: 3 (lower is better)
Translates to: SLQRTLGPTRGLGQPKPRESGKP*GKKGFW
Trigger: CCAGAAGCCCTTCTTGCCCAAAGGCTTCCCTGATTC...CCTGGGCTTGGGCTGGCCCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR TCA 72 bp AGGAAAGGAACCAACCAGGCCCCACTGGCACCCACATaGTGGACTCCCACCGGCTCTTCAGCAGCTCCTTCA +
Preference number: 3 (lower is better)
Translates to: RKGTNQAPLAPT*WTPTGSSAAPS
Trigger: TGAAGGAGCTGCTGAAGAGCCGGTGGGAGTCCATCATGTGGGTGCCAGTGGGGCCTGGTTGGTTCCTTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp CAGACTTTGGGGCTCAACCCTCCCACCATGCTTCCGTaGGTTCCCAAGTGGCAAGTCTGTAGAGGGCTCCCA +
Preference number: 3 (lower is better)
Translates to: QTLGLNPPTMLP*VPKWQVCRGLP
Trigger: TGGGAGCCCTCTACAGACTTGCCACTTGGGAACCCACGGAAGCATGGTGGGAGGGTTGAGCCCCAAAGTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp TGCTCCAGGCACCACTTTTGGCCACAGGAAACCCTGTaGCCCAGCCCAACCTGCAGGAAAGGAACCAACCAG +
Preference number: 3 (lower is better)
Translates to: CSRHHFWPQETL*PSPTCRKGTNQ
Trigger: CTGGTTGGTTCCTTTCCTGCAGGTTGGGCTGGGCCACAGGGTTTCCTGTGGCCAAAAGTGGTGCCTGGAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp GCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTaGAGGTTTGGCCAGGTGCCCTCACTCCCACACCCA +
Preference number: 3 (lower is better)
Translates to: ADGELAQYTGTM*RFGQVPSLPHP
Trigger: TGGGTGTGGGAGTGAGGGCACCTGGCCAAACCTCCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR-3UTR CAA 90 bp CTGCAGATGAGGGTACCTACAGCCTGGGAGGCCACACAGACCTTGTGTCCTAGGCAGACACTCTTGGTCTaGCCTTGCCCCTTGCAGAAG +
Preference number: 3 (lower is better)
Translates to: LQMRVPTAWEATQTLCPRQTLLV*PCPLQK
Trigger: CTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTG...CCTAGGACACAAGGTCTGTGTGGCCTCCCAGGCTGTAGGTACCCTCATCTGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR TCA 72 bp ACAGCTCCCACCCTTTCCTGGGCTGGAATGTCAGACTaGGGTCGGGTCCCTCTCTATCCCTCATTCCTGGCA +
Preference number: 3 (lower is better)
Translates to: TAPTLSWAGMSD*GRVPLYPSFLA
Trigger: TGCCAGGAATGAGGGATAGAGAGGGACCCGACCTCAGTCTGACATTCCAGCCCAGGAAAGGGTGGGAGCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 72 bp GCACCAGGACTAGGGAAAATGATAGGGAGGGGCAGCTaGCCCGGTTACATTCAGTCTGCAGACCCAGGCTCA +
Preference number: 3 (lower is better)
Translates to: APGLGKMIGRGS*PGYIQSADPGS
Trigger: TGAGCCTGGGTCTGCAGACTGAATGTAACCGGGGCAGCTGCCCCTCCCTATCATTTTCCCTAGTCCTGGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp TCTTCAGCAGCTCCTTCAGGGAGCTGGAAAGCCCAGTaGGCCCAGGGAGGTAGAATAGTCACCAGCACCACA +
Preference number: 3 (lower is better)
Translates to: SSAAPSGSWKAQ*AQGGRIVTSTT
Trigger: TGTGGTGCTGGTGACTATTCTACCTCCCTGGGCCCACTGGGCTTTCCAGCTCCCTGAAGGAGCTGCTGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp CATCTCTTCAGAGAACACTGGGTCCCACAAGGGGCTTaGGCCAGCCCAAGCCCAGGTTACTCCCACTACAGA +
Preference number: 3 (lower is better)
Translates to: HLFREHWVPQGA*ASPSPGYSHYR
Trigger: TCTGTAGTGGGAGTAACCTGGGCTTGGGCTGGCCCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp AGAGCTGGCTCAGTACACAGGCACTATGTGGAGGTTTaGCCAGGTGCCCTCACTCCCACACCCAACACTCTC +
Preference number: 3 (lower is better)
Translates to: RAGSVHRHYVEV*PGALTPTPNTL
Trigger: GAGAGTGTTGGGTGTGGGAGTGAGGGCACCTGGCCAAACCTCCACATAGTGCCTGTGTACTGAGCCAGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR TCA 72 bp TCAGACCCTTCTGCTGCCCGGGGTAGGGTACGTGCATaGCGGAGTCCACTGAGCTTCATAAAGCTACCTGCT +
Preference number: 3 (lower is better)
Translates to: SDPSAARGRVRA*RSPLSFIKLPA
Trigger: AGCAGGTAGCTTTATGAAGCTCAGTGGACTCCGTCATGCACGTACCCTACCCCGGGCAGCAGAAGGGTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR TCA 72 bp GCAGATCGCACTCCTGCACAAGGACCTGAGGTCCAGTaGATACTGATAGTGTGGACAGCAGGTGGGGACCTG +
Preference number: 3 (lower is better)
Translates to: ADRTPAQGPEVQ*ILIVWTAGGDL
Trigger: CAGGTCCCCACCTGCTGTCCACACTATCAGTATTCACTGGACCTCAGGTCCTTGTGCAGGAGTGCGATCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 72 bp CCTCATGTCAGACTTTGGGGCTCAACCCTCCCACCATaGTTCCGTGGGTTCCCAAGTGGCAAGTCTGTAGAG +
Preference number: 3 (lower is better)
Translates to: PHVRLWGSTLPP*FRGFPSGKSVE
Trigger: CTCTACAGACTTGCCACTTGGGAACCCACGGAAGCATGGTGGGAGGGTTGAGCCCCAAAGTCTGACATGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 72 bp CTCAGTACACAGGCACTATGTGGAGGTTTGGCCAGGTaGCCTCACTCCCACACCCAACACTCTCTGGGTACT +
Preference number: 3 (lower is better)
Translates to: LSTQALCGGLAR*PHSHTQHSLGT
Trigger: AGTACCCAGAGAGTGTTGGGTGTGGGAGTGAGGGCACCTGGCCAAACCTCCACATAGTGCCTGTGTACTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR TCA 72 bp CCCTTGCAGAAGCCCATGCAAACATCTGAGGCTGGCTaGCACACCCATGGAAGGGTTAGCTTGACCCTGTAC +
Preference number: 3 (lower is better)
Translates to: PLQKPMQTSEAG*HTHGRVSLTLY
Trigger: GTACAGGGTCAAGCTAACCCTTCCATGGGTGTGTCAGCCAGCCTCAGATGTTTGCATGGGCTTCTGCAAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR TCA 72 bp CAGACATGCTCAGTGAGGGGCTCTGCTCCTAGTCCCTaGTTTTCTGCAGATGAGGGTACCTACAGCCTGGGA +
Preference number: 3 (lower is better)
Translates to: QTCSVRGSAPSP*FSADEGTYSLG
Trigger: TCCCAGGCTGTAGGTACCCTCATCTGCAGAAAATCAGGGACTAGGAGCAGAGCCCCTCACTGAGCATGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR TCA 72 bp AGATTGCCCGGCAGATCGCACTCCTGCACAAGGACCTaGGGTCCAGTGAATACTGATAGTGTGGACAGCAGG +
Preference number: 3 (lower is better)
Translates to: RLPGRSHSCTRT*GPVNTDSVDSR
Trigger: CCTGCTGTCCACACTATCAGTATTCACTGGACCTCAGGTCCTTGTGCAGGAGTGCGATCTGCCGGGCAATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 72 bp AAGGGCTTCTGGGCCTTGGAGAGGCAGGTTCAACCATaGCCAAGCACCAGGACTAGGGAAAATGATAGGGAG +
Preference number: 3 (lower is better)
Translates to: KGFWALERQVQP*PSTRTRENDRE
Trigger: CTCCCTATCATTTTCCCTAGTCCTGGTGCTTGGGCATGGTTGAACCTGCCTCTCCAAGGCCCAGAAGCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 72 bp CACTCTTGGTCTTGCCTTGCCCCTTGCAGAAGCCCATaGAAACATCTGAGGCTGGCTGACACACCCATGGAA +
Preference number: 3 (lower is better)
Translates to: HSWSCLAPCRSP*KHLRLADTPME
Trigger: TTCCATGGGTGTGTCAGCCAGCCTCAGATGTTTGCATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR GCA 72 bp GGCCCATCTGGGACAGAACACAGACACTCTTGGTCTTaGCTTGCCCCTTGCAGAAGCCCATGCAAACATCTG +
Preference number: 3 (lower is better)
Translates to: GPSGTEHRHSWS*LAPCRSPCKHL
Trigger: CAGATGTTTGCATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR TCA 72 bp GGTGGGTACAATACTCTGTCGCACAGACATGCTCAGTaGGGGGCTCTGCTCCTAGTCCCTGATTTTCTGCAG +
Preference number: 3 (lower is better)
Translates to: GGYNTLSHRHAQ*GALLLVPDFLQ
Trigger: CTGCAGAAAATCAGGGACTAGGAGCAGAGCCCCTCACTGAGCATGTCTGTGCGACAGAGTATTGTACCCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR TCA 72 bp TGTTCGCTGCCTTGGCCTCCTATGGCCTGGTTTCCATaGGGCTCTTCTATCTGCACACACACACAGACACAC +
Preference number: 3 (lower is better)
Translates to: CSLPWPPMAWFP*GSSICTHTQTH
Trigger: GTGTGTCTGTGTGTGTGTGCAGATAGAAGAGCCTCATGGAAACCAGGCCATAGGAGGCCAAGGCAGCGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR GCA 72 bp CCACCATGTTCAGTGAGCAAGGAAGTGAAGCATCTGTaGATAAGCAACACACACGCACATGCGCGCGCACAC +
Preference number: 3 (lower is better)
Translates to: PPCSVSKEVKHL*ISNTHAHARAH
Trigger: GTGTGCGCGCGCATGTGCGTGTGTGTTGCTTATGCACAGATGCTTCACTTCCTTGCTCACTGAACATGGTGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 72 bp AGTGAAGCATCTGTGCATAAGCAACACACACGCACATaGGCGCGCACACACACACACACACACACACACACA +
Preference number: 3 (lower is better)
Translates to: SEASVHKQHTRT*ARTHTHTHTHT
Trigger: TGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCATGTGCGTGTGTGTTGCTTATGCACAGATGCTTCACT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp TCTATAGGCCCATCTGGGACAGAACACAGACACTCTTaGTCTTGCCTTGCCCCTTGCAGAAGCCCATGCAAA +
Preference number: 3 (lower is better)
Translates to: SIGPSGTEHRHS*SCLAPCRSPCK
Trigger: TTTGCATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR-3UTR CAA 90 bp AGATTCCCAGTGAGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGTCCCTTGGTATACTGTaGATTAAAGCTCTGGGCGTG +
Preference number: 3 (lower is better)
Translates to: RFPVRADGELAQYTGTMWSLGIL*IKALGV
Trigger: CACGCCCAGAGCTTTAATCAACAGTATACCAAGGGA...CCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCTCACTGGGAATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR TCA 72 bp GTGTTGATGGACGGAAAACACACTTCCTGGGCCACATaGGGTCAGGAGTCACAGTTGAGGTGTATGGCTATG +
Preference number: 3 (lower is better)
Translates to: VLMDGKHTSWAT*GQESQLRCMAM
Trigger: CATAGCCATACACCTCAACTGTGACTCCTGACCTCATGTGGCCCAGGAAGTGTGTTTTCCGTCCATCAACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR GCA 72 bp TTCATCTTTTCCTTTTTGCAACCTTGGAAGAGCCCTTaGAGTAGCTCGGTCCGGTGGAAATGGGCACTGGCA +
Preference number: 3 (lower is better)
Translates to: FIFSFLQPWKSP*SSSVRWKWALA
Trigger: TGCCAGTGCCCATTTCCACCGGACCGAGCTACTGCAAGGGCTCTTCCAAGGTTGCAAAAAGGAAAAGATGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp CTAAAACAGAGAACTGTTCGCTGCCTTGGCCTCCTATaGCCTGGTTTCCATGAGGCTCTTCTATCTGCACAC +
Preference number: 3 (lower is better)
Translates to: LKQRTVRCLGLL*PGFHEALLSAH
Trigger: GTGTGCAGATAGAAGAGCCTCATGGAAACCAGGCCATAGGAGGCCAAGGCAGCGAACAGTTCTCTGTTTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR TCA 72 bp ACACTTCCTGGGCCACATGAGGTCAGGAGTCACAGTTaGGGTGTATGGCTATGCTGCAAGTCTGAGATTCTT +
Preference number: 3 (lower is better)
Translates to: TLPGPHEVRSHS*GVWLCCKSEIL
Trigger: AAGAATCTCAGACTTGCAGCATAGCCATACACCTCAACTGTGACTCCTGACCTCATGTGGCCCAGGAAGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp GCCATGAAGCAACATGATAAGGTCTATAGGCCCATCTaGGACAGAACACAGACACTCTTGGTCTTGCCTTGC +
Preference number: 3 (lower is better)
Translates to: AMKQHDKVYRPI*DRTQTLLVLPC
Trigger: GCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGACCTTATCATGTTGCTTCATGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR TCA 72 bp AAAAGCAAGTGGCTCAGCCTCAACTGTACTGGGTATTaGATTCAAGAGGTAGCAAAGGTCAGAAGGCTCCCC +
Preference number: 3 (lower is better)
Translates to: KSKWLSLNCTGY*IQEVAKVRRLP
Trigger: GGGGAGCCTTCTGACCTTTGCTACCTCTTGAATTCAATACCCAGTACAGTTGAGGCTGAGCCACTTGCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR-3UTR CAA 90 bp GGAGTCACAGTTGAGGTGTATGGCTATGCTGCAAGTCTGAGATTCTTATGTGTTTGGTCAGCTTCTCTCTaGGCTTCCCTTGGTATACTG +
Preference number: 3 (lower is better)
Translates to: GVTVEVYGYAASLRFLCVWSASL*ASLGIL
Trigger: CAGTATACCAAGGGAAGCCAAGAGAGAAGCTGACCA...AACACATAAGAATCTCAGACTTGCAGCATAGCCATACACCTCAACTGTGACTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CCA 72 bp GAAAAACAAAAGCAAGTGGCTCAGCCTCAACTGTACTaGGTATTGAATTCAAGAGGTAGCAAAGGTCAGAAG +
Preference number: 3 (lower is better)
Translates to: EKQKQVAQPQLY*VLNSRGSKGQK
Trigger: CTTCTGACCTTTGCTACCTCTTGAATTCAATACCCAGTACAGTTGAGGCTGAGCCACTTGCTTTTGTTTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR TCA 72 bp GAGTCACAGTTGAGGTGTATGGCTATGCTGCAAGTCTaGGATTCTTATGTGTTCATAAGTTCATCTTTTCCT +
Preference number: 3 (lower is better)
Translates to: ESQLRCMAMLQV*DSYVFISSSFP
Trigger: AGGAAAAGATGAACTTATGAACACATAAGAATCTCAGACTTGCAGCATAGCCATACACCTCAACTGTGACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR GCA 90 bp GGACCAGACTCCAGTCAGACCCTTCTGCTGCCCGGGGTAGGGTACGTGCATGACGGCCCCATGTCCCTGTaGCCTGCCCACGGGCACCAC +
Preference number: 4 (lower is better)
Translates to: GPDSSQTLLLPGVGYVHDGPMSL*PAHGHH
Trigger: GTGGTGCCCGTGGGCAGGGCACAGGGACATGGGGCC...GTCATGCACGTACCCTACCCCGGGCAGCAGAAGGGTCTGACTGGAGTCTGGTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR GCA 90 bp GTCAGACTTTGGGGCTCAACCCTCCCACCATGCTTCCGTGGGTTCCCAAGTGGCCATGTCCCTGTGCCCTaGCCACGGGCACCACCGGAG +
Preference number: 4 (lower is better)
Translates to: VRLWGSTLPPCFRGFPSGHVPVP*PRAPPE
Trigger: CTCCGGTGGTGCCCGTGGGCAGGGCACAGGGACATG...GCCACTTGGGAACCCACGGAAGCATGGTGGGAGGGTTGAGCCCCAAAGTCTGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR GCA 90 bp CTGAATGTAGGCTCCAGGGTCTCTGAGGGGTGGAGGCAAGCAGGGGATGACTCTGGCCCCATGTCCCTGTaGCCTGCCCACGGGCACCAC +
Preference number: 4 (lower is better)
Translates to: LNVGSRVSEGWRQAGDDSGPMSL*PAHGHH
Trigger: GTGGTGCCCGTGGGCAGGGCACAGGGACATGGGGCC...AGAGTCATCCCCTGCTTGCCTCCACCCCTCAGAGACCCTGGAGCCTACATTCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR CAA 72 bp GGGCCAGAGGGGCTGCCAGGAGCCTCATGTCAGACTTaGGGGCTCAACCCTCCCACCATGCTTCCGTGGGTT +
Preference number: 4 (lower is better)
Translates to: GPEGLPGASCQT*GLNPPTMLPWV
Trigger: AACCCACGGAAGCATGGTGGGAGGGTTGAGCCCCAAAGTCTGACATGAGGCTCCTGGCAGCCCCTCTGGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR TCA 90 bp CTGCAGATGAGGGTACCTACAGCCTGGGAGGCCACACAGACCTTGTGTCCTAGGGCTGTGGACAGCCGCTaGCTGCGGGTTGGTCGCCCT +
Preference number: 4 (lower is better)
Translates to: LQMRVPTAWEATQTLCPRAVDSR*LRVGRP
Trigger: AGGGCGACCAACCCGCAGTCAGCGGCTGTCCACAGC...CCTAGGACACAAGGTCTGTGTGGCCTCCCAGGCTGTAGGTACCCTCATCTGCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp TCTCTTCAGAGAACACTGGGTCCCACAAGGGGCTTGGGCCAGCCCAAGCCCAGGCTGCTCCCCATACGATaGACTGGGGCCACCTCCACC +
Preference number: 4 (lower is better)
Translates to: SLQRTLGPTRGLGQPKPRLLPIR*TGATST
Trigger: GGTGGAGGTGGCCCCAGTGCATCGTATGGGGAGCAG...CCTGGGCTTGGGCTGGCCCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CCA 90 bp GGACCAGACTCCAGTCAGACCCTTCTGCTGCCCGGGGTAGGGTACGTGCATGACGCGGGTGACTCTCGCTaGCTGTCACTCAGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: GPDSSQTLLLPGVGYVHDAGDSR*LSLSWA
Trigger: AGCCCAGCTGAGTGACAGCCAGCGAGAGTCACCCGC...GTCATGCACGTACCCTACCCCGGGCAGCAGAAGGGTCTGACTGGAGTCTGGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR GCA 90 bp AACCTTGGAAGAGCCCTTGCAGTAGCTCGGTCCGGTGGAAATGGGCACTGGCAGGCGGCGACAGAGGGCTaGCAACTCAGGCAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: NLGRALAVARSGGNGHWQAATEG*QLRQLE
Trigger: CTCCAGCTGCCTGAGTTGGCAGCCCTCTGTCGCCGC...CTGCCAGTGCCCATTTCCACCGGACCGAGCTACTGCAAGGGCTCTTCCAAGGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CCA 90 bp TCTCTTCAGAGAACACTGGGTCCCACAAGGGGCTTGGGCCAGCCCAAGCCCAGGAGGTGGCTCCGCATGTaGCGTGTCATAGTGCCTCGC +
Preference number: 4 (lower is better)
Translates to: SLQRTLGPTRGLGQPKPRRWLRM*RVIVPR
Trigger: GCGAGGCACTATGACACGCCACATGCGGAGCCACCT...CCTGGGCTTGGGCTGGCCCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR GCA 90 bp CCCATCTGGGACAGAACACAGACACTCTTGGTCTTGCCTTGCCCCTTGCAGAAGCATGTCCCTGTGCCCTaGCCACGGGCACCACCGGAG +
Preference number: 4 (lower is better)
Translates to: PIWDRTQTLLVLPCPLQKHVPVP*PRAPPE
Trigger: CTCCGGTGGTGCCCGTGGGCAGGGCACAGGGACATG...CTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp TCTCTTCAGAGAACACTGGGTCCCACAAGGGGCTTGGGCCAGCCCAAGCCCAGGCAGGGCCAAAGGGCTTaGCAGCTCGCTTCAGTTTGC +
Preference number: 4 (lower is better)
Translates to: SLQRTLGPTRGLGQPKPRQGQRA*QLASVC
Trigger: GCAAACTGAAGCGAGCTGGCAAGCCCTTTGGCCCTG...CCTGGGCTTGGGCTGGCCCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR GCA 90 bp CTGAATGTAGGCTCCAGGGTCTCTGAGGGGTGGAGGCAAGCAGGGGATGACTCTCCTCGGCACCCCCACTaGCGGTCTCATAAGCCCCTT +
Preference number: 4 (lower is better)
Translates to: LNVGSRVSEGWRQAGDDSPRHPH*RSHKPL
Trigger: AAGGGGCTTATGAGACCGGCAGTGGGGGTGCCGAGG...AGAGTCATCCCCTGCTTGCCTCCACCCCTCAGAGACCCTGGAGCCTACATTCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp AGATTCCCAGTGAGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGGCGGCGACAGAGGGCTaGCAACTCAGGCAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: RFPVRADGELAQYTGTMWAATEG*QLRQLE
Trigger: CTCCAGCTGCCTGAGTTGGCAGCCCTCTGTCGCCGC...CCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCTCACTGGGAATCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp AGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGAGGTTTGGCCAGAATGCCGGAGGCTCTTaGGAGGCTGCCCACCCTGTC +
Preference number: 4 (lower is better)
Translates to: RADGELAQYTGTMWRFGQNAGGS*EAAHPV
Trigger: GACAGGGTGGGCAGCCTCGCAAGAGCCTCCGGCATT...CTGGCCAAACCTCCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp GGGACAGAACACAGACACTCTTGGTCTTGCCTTGCCCCTTGCAGAAGCCCATGCCCCCACTACTCCCATTaGTGCTGGTGCTGCAGCCCC +
Preference number: 4 (lower is better)
Translates to: GTEHRHSWSCLAPCRSPCPHYSH*CWCCSP
Trigger: GGGGCTGCAGCACCAGCACCAATGGGAGTAGTGGGG...GCATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp AGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGAGGTTTGGCCAGTGGCTGTCACTCAGCTaGGCTGGGTCCTCGGGTGTG +
Preference number: 4 (lower is better)
Translates to: RADGELAQYTGTMWRFGQWLSLS*AGSSGV
Trigger: CACACCCGAGGACCCAGCCCAGCTGAGTGACAGCCA...CTGGCCAAACCTCCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp GGTGGGGAGCAGAGGCCAGCATGCCCTGCTATTTCACTGGGTAGAATAGTGCCTCAGCTCGCTTCAGTTTaGGGCGACAGAGGGCTGCCA +
Preference number: 4 (lower is better)
Translates to: GGEQRPACPAISLGRIVPQLASV*GDRGLP
Trigger: TGGCAGCCCTCTGTCGCCGCAAACTGAAGCGAGCTG...AGGCACTATTCTACCCAGTGAAATAGCAGGGCATGCTGGCCTCTGCTCCCCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp CTGAATGTAGGCTCCAGGGTCTCTGAGGGGTGGAGGCAAGCAGGGGATGACTCTCAGGGCCAAAGGGCTTaGCAGCTCGCTTCAGTTTGC +
Preference number: 4 (lower is better)
Translates to: LNVGSRVSEGWRQAGDDSQGQRA*QLASVC
Trigger: GCAAACTGAAGCGAGCTGGCAAGCCCTTTGGCCCTG...AGAGTCATCCCCTGCTTGCCTCCACCCCTCAGAGACCCTGGAGCCTACATTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp AGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGAGGTTTGGCCAGTCCAAGCCCAGCTCCTaGTCACAGCCCCCACTACTC +
Preference number: 4 (lower is better)
Translates to: RADGELAQYTGTMWRFGQSKPSS*SQPPLL
Trigger: GAGTAGTGGGGGCTGTGAGCAGGAGCTGGGCTTGGA...CTGGCCAAACCTCCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp ACAGGCACTATGTGGAGGTTTGGCCAGGTGCCCTCACTCCCACACCCAACACTCTCTCCTCCTCCTCCTTaGAGGGGAATGACTGCTCCC +
Preference number: 4 (lower is better)
Translates to: TGTMWRFGQVPSLPHPTLSPPPP*RGMTAP
Trigger: GGGAGCAGTCATTCCCCTGCAAGGAGGAGGAGGAGA...GAGTGTTGGGTGTGGGAGTGAGGGCACCTGGCCAAACCTCCACATAGTGCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp AGCAGACATCTCTTCAGAGAACACTGGGTCCCACAAGGGGCTTGGGCCAGCCCACATCATCTGAGCCTTTaGCCTGAGGGAGCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: SRHLFREHWVPQGAWASPHHLSL*PEGAPG
Trigger: CCCAGGAGCTCCCTCAGGCCAAAGGCTCAGATGATG...TGGGCTGGCCCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGATGTCTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CCA 90 bp CTGGGACAGAACACAGACACTCTTGGTCTTGCCTTGCCCCTTGCAGAAGCCCATTGGCTGTCACTCAGCTaGGCTGGGTCCTCGGGTGTG +
Preference number: 4 (lower is better)
Translates to: LGQNTDTLGLALPLAEAHWLSLS*AGSSGV
Trigger: CACACCCGAGGACCCAGCCCAGCTGAGTGACAGCCA...ATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp CACAAGGCTCATGGGCAGGGCCAAATCCACCCCTTGGGTTCAGCTAGGAAGCCTGTGTGCATGCGCAGGTaGCTGATGAGGTTGCGCTGT +
Preference number: 4 (lower is better)
Translates to: HKAHGQGQIHPLGSARKPVCMRR*LMRLRC
Trigger: ACAGCGCAACCTCATCAGCCACCTGCGCATGCACAC...AGGCTTCCTAGCTGAACCCAAGGGGTGGATTTGGCCCTGCCCATGAGCCTTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR TCA 90 bp GGGACAGAACACAGACACTCTTGGTCTTGCCTTGCCCCTTGCAGAAGCCCATGCCTCCTTGCAGGGGAATaGCTGCTCCCCATACGATGC +
Preference number: 4 (lower is better)
Translates to: GTEHRHSWSCLAPCRSPCLLAGE*LLPIRC
Trigger: GCATCGTATGGGGAGCAGTCATTCCCCTGCAAGGAG...GCATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp GATTTTCTGCAGATGAGGGTACCTACAGCCTGGGAGGCCACACAGACCTTGTGTAATGCCGGAGGCTCTTaGGAGGCTGCCCACCCTGTC +
Preference number: 4 (lower is better)
Translates to: DFLQMRVPTAWEATQTLCNAGGS*EAAHPV
Trigger: GACAGGGTGGGCAGCCTCGCAAGAGCCTCCGGCATT...ACACAAGGTCTGTGTGGCCTCCCAGGCTGTAGGTACCCTCATCTGCAGAAAATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp AGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGAGGTTTGGCCAGTCTCCTCCTCCTCCTTaGAGGGGAATGACTGCTCCC +
Preference number: 4 (lower is better)
Translates to: RADGELAQYTGTMWRFGQSPPPP*RGMTAP
Trigger: GGGAGCAGTCATTCCCCTGCAAGGAGGAGGAGGAGA...CTGGCCAAACCTCCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp AGCAGACATCTCTTCAGAGAACACTGGGTCCCACAAGGGGCTTGGGCCAGCCCACCTGGAAATCGAGCCTaGATGACAGAGGCTGTGGAC +
Preference number: 4 (lower is better)
Translates to: SRHLFREHWVPQGAWASPPGNRA*MTEAVD
Trigger: GTCCACAGCCTCTGTCATCCAGGCTCGATTTCCAGG...TGGGCTGGCCCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGATGTCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CCA 90 bp AGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGAGGTTTGGCCAGTGGGCTCCTCAGGAGTaGCCCCCAGCTCAACAAATG +
Preference number: 4 (lower is better)
Translates to: RADGELAQYTGTMWRFGQWAPQE*PPAQQM
Trigger: CATTTGTTGAGCTGGGGGCCACTCCTGAGGAGCCCA...CTGGCCAAACCTCCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp CACAGACACTCTTGGTCTTGCCTTGCCCCTTGCAGAAGCCCATGCAAACATCTGCAGCTCGCTTCAGTTTaGGGCGACAGAGGGCTGCCA +
Preference number: 4 (lower is better)
Translates to: HRHSWSCLAPCRSPCKHLQLASV*GDRGLP
Trigger: TGGCAGCCCTCTGTCGCCGCAAACTGAAGCGAGCTG...CAGATGTTTGCATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp AGCAGACATCTCTTCAGAGAACACTGGGTCCCACAAGGGGCTTGGGCCAGCCCAAAGTCCAGGATCTGCTaGAACACAGTGGAGCTGACC +
Preference number: 4 (lower is better)
Translates to: SRHLFREHWVPQGAWASPKSRIC*NTVELT
Trigger: GGTCAGCTCCACTGTGTTCCAGCAGATCCTGGACTT...TGGGCTGGCCCAAGCCCCTTGTGGGACCCAGTGTTCTCTGAAGAGATGTCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CCA 90 bp GGCTCCAGGGTCTCTGAGGGGTGGAGGCAAGCAGGGGATGACTCTGGAATTTTTCCTGGAAATCGAGCCTaGATGACAGAGGCTGTGGAC +
Preference number: 4 (lower is better)
Translates to: GSRVSEGWRQAGDDSGIFPGNRA*MTEAVD
Trigger: GTCCACAGCCTCTGTCATCCAGGCTCGATTTCCAGG...AAAAATTCCAGAGTCATCCCCTGCTTGCCTCCACCCCTCAGAGACCCTGGAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp CACAAGGCTCATGGGCAGGGCCAAATCCACCCCTTGGGTTCAGCTAGGAAGCCTGTGTGCTCTCCTGAGTaGAGGTGCCCAGAAAAAGCT +
Preference number: 4 (lower is better)
Translates to: HKAHGQGQIHPLGSARKPVCSPE*RCPEKA
Trigger: AGCTTTTTCTGGGCACCTCCACTCAGGAGAGCACAC...AGGCTTCCTAGCTGAACCCAAGGGGTGGATTTGGCCCTGCCCATGAGCCTTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CCA 90 bp CTCAGATGCTCAGTCAGAGAACTAAGATTCCCAGTGAGGGCTGATGGAGAGCTGCCCCACTACTCCCATTaGTGCTGGTGCTGCAGCCCC +
Preference number: 4 (lower is better)
Translates to: LRCSVRELRFPVRADGELPHYSH*CWCCSP
Trigger: GGGGCTGCAGCACCAGCACCAATGGGAGTAGTGGGG...CAGCTCTCCATCAGCCCTCACTGGGAATCTTAGTTCTCTGACTGAGCATCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp AAGGTCTATAGGCCCATCTGGGACAGAACACAGACACTCTTGGTCTTGCCTTGCGTCACTCAGCTGGGCTaGGTCCTCGGGTGTGAGGTG +
Preference number: 4 (lower is better)
Translates to: KVYRPIWDRTQTLLVLPCVTQLG*VLGCEV
Trigger: CACCTCACACCCGAGGACCCAGCCCAGCTGAGTGAC...GCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGACCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp AAGGTCTATAGGCCCATCTGGGACAGAACACAGACACTCTTGGTCTTGCCTTGCGCGGGTGACTCTCGCTaGCTGTCACTCAGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: KVYRPIWDRTQTLLVLPCAGDSR*LSLSWA
Trigger: AGCCCAGCTGAGTGACAGCCAGCGAGAGTCACCCGC...GCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGACCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp AGATTCCCAGTGAGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGTGGGCTCCTCAGGAGTaGCCCCCAGCTCAACAAATG +
Preference number: 4 (lower is better)
Translates to: RFPVRADGELAQYTGTMWWAPQE*PPAQQM
Trigger: CATTTGTTGAGCTGGGGGCCACTCCTGAGGAGCCCA...CCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCTCACTGGGAATCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp AACCTTGGAAGAGCCCTTGCAGTAGCTCGGTCCGGTGGAAATGGGCACTGGCAGTTCACCTTCTTCCCCTaGGCAGGAACCCTTAGATCC +
Preference number: 4 (lower is better)
Translates to: NLGRALAVARSGGNGHWQFTFFP*AGTLRS
Trigger: GGATCTAAGGGTTCCTGCCCAGGGGAAGAAGGTGAA...CTGCCAGTGCCCATTTCCACCGGACCGAGCTACTGCAAGGGCTCTTCCAAGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CCA 90 bp CACAGACACTCTTGGTCTTGCCTTGCCCCTTGCAGAAGCCCATGCAAACATCTGCTGGAGGGGACAGGATaGGGTGGGCTCACTTCCACA +
Preference number: 4 (lower is better)
Translates to: HRHSWSCLAPCRSPCKHLLEGTG*GGLTST
Trigger: TGTGGAAGTGAGCCCACCCCATCCTGTCCCCTCCAG...CAGATGTTTGCATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232082.2
CDS-3UTR TCA 90 bp CTGCAGATGAGGGTACCTACAGCCTGGGAGGCCACACAGACCTTGTGTCCTAGGGGAACACAGTGGAGCTaGCCATGTCTGTGTCTAAGT +
Preference number: 4 (lower is better)
Translates to: LQMRVPTAWEATQTLCPRGTQWS*PCLCLS
Trigger: ACTTAGACACAGACATGGTCAGCTCCACTGTGTTCC...CCTAGGACACAAGGTCTGTGTGGCCTCCCAGGCTGTAGGTACCCTCATCTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR TCA 90 bp ACAGGCACTATGTGGAGGTTTGGCCAGGTGCCCTCACTCCCACACCCAACACTCAAAAAGCTCATCATCTaGGCCTTTGGCCTGAGGGAG +
Preference number: 4 (lower is better)
Translates to: TGTMWRFGQVPSLPHPTLKKLII*AFGLRE
Trigger: CTCCCTCAGGCCAAAGGCTCAGATGATGAGCTTTTT...GAGTGTTGGGTGTGGGAGTGAGGGCACCTGGCCAAACCTCCACATAGTGCCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp GTGGCTCAGCCTCAACTGTACTGGGTATTGAATTCAAGAGGTAGCAAAGGTCAGCGCCAGTATGGCCGCTaGCCCCCTCACTCCCACTCT +
Preference number: 4 (lower is better)
Translates to: VAQPQLYWVLNSRGSKGQRQYGR*PPHSHS
Trigger: AGAGTGGGAGTGAGGGGGGCAGCGGCCATACTGGCG...CTGACCTTTGCTACCTCTTGAATTCAATACCCAGTACAGTTGAGGCTGAGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR GCA 90 bp CATGATAAGGTCTATAGGCCCATCTGGGACAGAACACAGACACTCTTGGTCTTGCGCCAGTATGGCCGCTaGCCCCCTCACTCCCACTCT +
Preference number: 4 (lower is better)
Translates to: HDKVYRPIWDRTQTLLVLRQYGR*PPHSHS
Trigger: AGAGTGGGAGTGAGGGGGGCAGCGGCCATACTGGCG...CAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGACCTTATCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp GATAAGGTCTATAGGCCCATCTGGGACAGAACACAGACACTCTTGGTCTTGCCTCCTCGGCACCCCCACTaGCGGTCTCATAAGCCCCTT +
Preference number: 4 (lower is better)
Translates to: DKVYRPIWDRTQTLLVLPPRHPH*RSHKPL
Trigger: AAGGGGCTTATGAGACCGGCAGTGGGGGTGCCGAGG...AGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGACCTTATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR TCA 90 bp GGTGGGGAGCAGAGGCCAGCATGCCCTGCTATTTCACTGGGTAGAATAGTGCCTAAAAAGCTCATCATCTaGGCCTTTGGCCTGAGGGAG +
Preference number: 4 (lower is better)
Translates to: GGEQRPACPAISLGRIVPKKLII*AFGLRE
Trigger: CTCCCTCAGGCCAAAGGCTCAGATGATGAGCTTTTT...AGGCACTATTCTACCCAGTGAAATAGCAGGGCATGCTGGCCTCTGCTCCCCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR TCA 90 bp CTCAGATGCTCAGTCAGAGAACTAAGATTCCCAGTGAGGGCTGATGGAGAGCTGCTCCTTGCAGGGGAATaGCTGCTCCCCATACGATGC +
Preference number: 4 (lower is better)
Translates to: LRCSVRELRFPVRADGELLLAGE*LLPIRC
Trigger: GCATCGTATGGGGAGCAGTCATTCCCCTGCAAGGAG...CAGCTCTCCATCAGCCCTCACTGGGAATCTTAGTTCTCTGACTGAGCATCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp CTCAGATGCTCAGTCAGAGAACTAAGATTCCCAGTGAGGGCTGATGGAGAGCTGAAGCCCTTGGCCCTCTaGTGGTTCAGCTGTAGCAGG +
Preference number: 4 (lower is better)
Translates to: LRCSVRELRFPVRADGELKPLAL*WFSCSR
Trigger: CCTGCTACAGCTGAACCAGCAGAGGGCCAAGGGCTT...CAGCTCTCCATCAGCCCTCACTGGGAATCTTAGTTCTCTGACTGAGCATCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp AGATTCCCAGTGAGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGGCTGTTTTGAATGGCTaGGAAGCTCCATGTCTGGCC +
Preference number: 4 (lower is better)
Translates to: RFPVRADGELAQYTGTMWAVLNG*EAPCLA
Trigger: GGCCAGACATGGAGCTTCCCAGCCATTCAAAACAGC...CCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCTCACTGGGAATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp CACAAGGCTCATGGGCAGGGCCAAATCCACCCCTTGGGTTCAGCTAGGAAGCCTAGGAGCTGTTTTGAATaGCTGGGAAGCTCCATGTCT +
Preference number: 4 (lower is better)
Translates to: HKAHGQGQIHPLGSARKPRSCFE*LGSSMS
Trigger: AGACATGGAGCTTCCCAGCCATTCAAAACAGCTCCT...AGGCTTCCTAGCTGAACCCAAGGGGTGGATTTGGCCCTGCCCATGAGCCTTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CCA 90 bp CCCATCTGGGACAGAACACAGACACTCTTGGTCTTGCCTTGCCCCTTGCAGAAGGCCAGGACATTCTTGTaGGCCCGGAAGATAGAGTTC +
Preference number: 4 (lower is better)
Translates to: PIWDRTQTLLVLPCPLQKARTFL*ARKIEF
Trigger: GAACTCTATCTTCCGGGCCCACAAGAATGTCCTGGC...CTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp GATTTTCTGCAGATGAGGGTACCTACAGCCTGGGAGGCCACACAGACCTTGTGTTTTGGCTCAGATGGCTaGTCACTGGGCAGGAGCTTG +
Preference number: 4 (lower is better)
Translates to: DFLQMRVPTAWEATQTLCFGSDG*SLGRSL
Trigger: CAAGCTCCTGCCCAGTGACCAGCCATCTGAGCCAAA...ACACAAGGTCTGTGTGGCCTCCCAGGCTGTAGGTACCCTCATCTGCAGAAAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp GGTGGGGAGCAGAGGCCAGCATGCCCTGCTATTTCACTGGGTAGAATAGTGCCTCACATCTACAAGCCCTaGAAATCGAGCCTGGATGAC +
Preference number: 4 (lower is better)
Translates to: GGEQRPACPAISLGRIVPHIYKP*KSSLDD
Trigger: GTCATCCAGGCTCGATTTCCAGGGCTTGTAGATGTG...AGGCACTATTCTACCCAGTGAAATAGCAGGGCATGCTGGCCTCTGCTCCCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp CCCATCTGGGACAGAACACAGACACTCTTGGTCTTGCCTTGCCCCTTGCAGAAGGTGTGCTCTCCTGAGTaGAGGTGCCCAGAAAAAGCT +
Preference number: 4 (lower is better)
Translates to: PIWDRTQTLLVLPCPLQKVCSPE*RCPEKA
Trigger: AGCTTTTTCTGGGCACCTCCACTCAGGAGAGCACAC...CTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp GATTTTCTGCAGATGAGGGTACCTACAGCCTGGGAGGCCACACAGACCTTGTGTGGGGACAGGATGGGGTaGGCTCACTTCCACAAATGT +
Preference number: 4 (lower is better)
Translates to: DFLQMRVPTAWEATQTLCGDRMG*AHFHKC
Trigger: ACATTTGTGGAAGTGAGCCCACCCCATCCTGTCCCC...ACACAAGGTCTGTGTGGCCTCCCAGGCTGTAGGTACCCTCATCTGCAGAAAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000232082.2
3UTR CAA 72 bp AGGCCCATCTGGGACAGAACACAGACACTCTTGGTCTaGCCTTGCCCCTTGCAGAAGCCCATGCAAACATCT +
Preference number: 4 (lower is better)
Translates to: RPIWDRTQTLLV*PCPLQKPMQTS
Trigger: AGATGTTTGCATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR CAA 72 bp GTCTATAGGCCCATCTGGGACAGAACACAGACACTCTaGGTCTTGCCTTGCCCCTTGCAGAAGCCCATGCAA +
Preference number: 4 (lower is better)
Translates to: VYRPIWDRTQTL*VLPCPLQKPMQ
Trigger: TTGCATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp CTGGGACAGAACACAGACACTCTTGGTCTTGCCTTGCCCCTTGCAGAAGCCCATCCTTGGCACAGGGGATaGACACATAAACATTGTCCC +
Preference number: 4 (lower is better)
Translates to: LGQNTDTLGLALPLAEAHPWHRG*THKHCP
Trigger: GGGACAATGTTTATGTGTGCATCCCCTGTGCCAAGG...ATGGGCTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp GGCTCCAGGGTCTCTGAGGGGTGGAGGCAAGCAGGGGATGACTCTGGAATTTTTAGGAGCTGTTTTGAATaGCTGGGAAGCTCCATGTCT +
Preference number: 4 (lower is better)
Translates to: GSRVSEGWRQAGDDSGIFRSCFE*LGSSMS
Trigger: AGACATGGAGCTTCCCAGCCATTCAAAACAGCTCCT...AAAAATTCCAGAGTCATCCCCTGCTTGCCTCCACCCCTCAGAGACCCTGGAGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp CTCAGATGCTCAGTCAGAGAACTAAGATTCCCAGTGAGGGCTGATGGAGAGCTGTTTGGCTCAGATGGCTaGTCACTGGGCAGGAGCTTG +
Preference number: 4 (lower is better)
Translates to: LRCSVRELRFPVRADGELFGSDG*SLGRSL
Trigger: CAAGCTCCTGCCCAGTGACCAGCCATCTGAGCCAAA...CAGCTCTCCATCAGCCCTCACTGGGAATCTTAGTTCTCTGACTGAGCATCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp CTCAGATGCTCAGTCAGAGAACTAAGATTCCCAGTGAGGGCTGATGGAGAGCTGGAAGTTTGGCTCAGATaGCTGGTCACTGGGCAGGAG +
Preference number: 4 (lower is better)
Translates to: LRCSVRELRFPVRADGELEVWLR*LVTGQE
Trigger: CTCCTGCCCAGTGACCAGCCATCTGAGCCAAACTTC...CAGCTCTCCATCAGCCCTCACTGGGAATCTTAGTTCTCTGACTGAGCATCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp ACAAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATCTGCTCCCCATACGATaGACTGGGGCCACCTCCACC +
Preference number: 4 (lower is better)
Translates to: TKERESKCGSHPSQQPLNLLPIR*TGATST
Trigger: GGTGGAGGTGGCCCCAGTGCATCGTATGGGGAGCAG...ATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp GCTGCACTCAGATGCTCAGTCAGAGAACTAAGATTCCCAGTGAGGGCTGATGGAGCTGTTTTGAATGGCTaGGAAGCTCCATGTCTGGCC +
Preference number: 4 (lower is better)
Translates to: AALRCSVRELRFPVRADGAVLNG*EAPCLA
Trigger: GGCCAGACATGGAGCTTCCCAGCCATTCAAAACAGC...TCCATCAGCCCTCACTGGGAATCTTAGTTCTCTGACTGAGCATCTGAGTGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp GGAGTCACAGTTGAGGTGTATGGCTATGCTGCAAGTCTGAGATTCTTATGTGTTGTCACTCAGCTGGGCTaGGTCCTCGGGTGTGAGGTG +
Preference number: 4 (lower is better)
Translates to: GVTVEVYGYAASLRFLCVVTQLG*VLGCEV
Trigger: CACCTCACACCCGAGGACCCAGCCCAGCTGAGTGAC...AACACATAAGAATCTCAGACTTGCAGCATAGCCATACACCTCAACTGTGACTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CCA 90 bp GCTGCACTCAGATGCTCAGTCAGAGAACTAAGATTCCCAGTGAGGGCTGATGGATTCACCTTCTTCCCCTaGGCAGGAACCCTTAGATCC +
Preference number: 4 (lower is better)
Translates to: AALRCSVRELRFPVRADGFTFFP*AGTLRS
Trigger: GGATCTAAGGGTTCCTGCCCAGGGGAAGAAGGTGAA...TCCATCAGCCCTCACTGGGAATCTTAGTTCTCTGACTGAGCATCTGAGTGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR TCA 90 bp GATAAGGTCTATAGGCCCATCTGGGACAGAACACAGACACTCTTGGTCTTGCCTGCTTGCCTGTGTAGATaGAGTCCAGGATCTGCTGGA +
Preference number: 4 (lower is better)
Translates to: DKVYRPIWDRTQTLLVLPACLCR*SPGSAG
Trigger: TCCAGCAGATCCTGGACTTCATCTACACAGGCAAGC...AGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGACCTTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp CCCATCTGGGACAGAACACAGACACTCTTGGTCTTGCCTTGCCCCTTGCAGAAGTTGATGAGGTTATCATaGAGGACCAGGGACTTGAAG +
Preference number: 4 (lower is better)
Translates to: PIWDRTQTLLVLPCPLQKLMRLS*RTRDLK
Trigger: CTTCAAGTCCCTGGTCCTGCATGATAACCTCATCAA...CTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp AAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATCTTCCAAGCCCAGCTCCTaGTCACAGCCCCCACTACTC +
Preference number: 4 (lower is better)
Translates to: KGKRIQVWIPPIPTTLKSSKPSS*SQPPLL
Trigger: GAGTAGTGGGGGCTGTGAGCAGGAGCTGGGCTTGGA...AGATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp CTCAGATGCTCAGTCAGAGAACTAAGATTCCCAGTGAGGGCTGATGGAGAGCTGCCTTGGCACAGGGGATaGACACATAAACATTGTCCC +
Preference number: 4 (lower is better)
Translates to: LRCSVRELRFPVRADGELPWHRG*THKHCP
Trigger: GGGACAATGTTTATGTGTGCATCCCCTGTGCCAAGG...CAGCTCTCCATCAGCCCTCACTGGGAATCTTAGTTCTCTGACTGAGCATCTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp GGAGTCACAGTTGAGGTGTATGGCTATGCTGCAAGTCTGAGATTCTTATGTGTTCAGATGGCTGGTCACTaGGCAGGAGCTTGCCTGTGT +
Preference number: 4 (lower is better)
Translates to: GVTVEVYGYAASLRFLCVQMAGH*AGACLC
Trigger: ACACAGGCAAGCTCCTGCCCAGTGACCAGCCATCTG...AACACATAAGAATCTCAGACTTGCAGCATAGCCATACACCTCAACTGTGACTCC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CCA 90 bp ACAAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATCAGATGGCTGGTCACTaGGCAGGAGCTTGCCTGTGT +
Preference number: 4 (lower is better)
Translates to: TKERESKCGSHPSQQPLNQMAGH*AGACLC
Trigger: ACACAGGCAAGCTCCTGCCCAGTGACCAGCCATCTG...ATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp GCTCATAAAAGGGAGCTGCTCCTTCCTAATGGCTTCTGCCTGTTACTCAGATGCCACATCTACAAGCCCTaGAAATCGAGCCTGGATGAC +
Preference number: 4 (lower is better)
Translates to: AHKRELLLPNGFCLLLRCHIYKP*KSSLDD
Trigger: GTCATCCAGGCTCGATTTCCAGGGCTTGTAGATGTG...GCATCTGAGTAACAGGCAGAAGCCATTAGGAAGGAGCAGCTCCCTTTTATGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CCA 90 bp ACAAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATCATCATCTGAGCCTTTaGCCTGAGGGAGCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: TKERESKCGSHPSQQPLNHHLSL*PEGAPG
Trigger: CCCAGGAGCTCCCTCAGGCCAAAGGCTCAGATGATG...ATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR TCA 90 bp ACAAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATGTTACCAGACATACCTaGGCTCTGGAGGGGACAGGA +
Preference number: 4 (lower is better)
Translates to: TKERESKCGSHPSQQPLNVTRHT*ALEGTG
Trigger: TCCTGTCCCCTCCAGAGCTCAGGTATGTCTGGTAAC...ATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232082.2
CDS-3UTR GCA 90 bp GCTGCACTCAGATGCTCAGTCAGAGAACTAAGATTCCCAGTGAGGGCTGATGGATTGATGAGGTTATCATaGAGGACCAGGGACTTGAAG +
Preference number: 4 (lower is better)
Translates to: AALRCSVRELRFPVRADGLMRLS*RTRDLK
Trigger: CTTCAAGTCCCTGGTCCTGCATGATAACCTCATCAA...TCCATCAGCCCTCACTGGGAATCTTAGTTCTCTGACTGAGCATCTGAGTGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CCA 90 bp ACAAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATGAAGTTTGGCTCAGATaGCTGGTCACTGGGCAGGAG +
Preference number: 4 (lower is better)
Translates to: TKERESKCGSHPSQQPLNEVWLR*LVTGQE
Trigger: CTCCTGCCCAGTGACCAGCCATCTGAGCCAAACTTC...ATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR CAA 72 bp CAAAAGCAAGTGGCTCAGCCTCAACTGTACTGGGTATaGAATTCAAGAGGTAGCAAAGGTCAGAAGGCTCCC +
Preference number: 4 (lower is better)
Translates to: QKQVAQPQLYWV*NSRGSKGQKAP
Trigger: GGGAGCCTTCTGACCTTTGCTACCTCTTGAATTCAATACCCAGTACAGTTGAGGCTGAGCCACTTGCTTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
3UTR CAA 72 bp TTAAATGAAACAGATACCCCATCCCTCCTGAGGTATTaGCAAATGGGATGGATAGAGCCCAACCTGGGGCTC +
Preference number: 4 (lower is better)
Translates to: LNETDTPSLLRY*QMGWIEPNLGL
Trigger: GAGCCCCAGGTTGGGCTCTATCCATCCCATTTGCAAATACCTCAGGAGGGATGGGGTATCTGTTTCATTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR TCA 90 bp GGAGTCACAGTTGAGGTGTATGGCTATGCTGCAAGTCTGAGATTCTTATGTGTTGCTTGCCTGTGTAGATaGAGTCCAGGATCTGCTGGA +
Preference number: 4 (lower is better)
Translates to: GVTVEVYGYAASLRFLCVACLCR*SPGSAG
Trigger: TCCAGCAGATCCTGGACTTCATCTACACAGGCAAGC...AACACATAAGAATCTCAGACTTGCAGCATAGCCATACACCTCAACTGTGACTCC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR TCA 90 bp GTGGCTCAGCCTCAACTGTACTGGGTATTGAATTCAAGAGGTAGCAAAGGTCAGGGTCTTCTCACAAACTaGGCACTTGAAAGGACGAGA +
Preference number: 4 (lower is better)
Translates to: VAQPQLYWVLNSRGSKGQGLLTN*ALERTR
Trigger: TCTCGTCCTTTCAAGTGCTCAGTTTGTGAGAAGACC...CTGACCTTTGCTACCTCTTGAATTCAATACCCAGTACAGTTGAGGCTGAGCCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CCA 90 bp ACAAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATAAGTCCAGGATCTGCTaGAACACAGTGGAGCTGACC +
Preference number: 4 (lower is better)
Translates to: TKERESKCGSHPSQQPLNKSRIC*NTVELT
Trigger: GGTCAGCTCCACTGTGTTCCAGCAGATCCTGGACTT...ATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR TCA 90 bp ACAAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATGGAACACAGTGGAGCTaGCCATGTCTGTGTCTAAGT +
Preference number: 4 (lower is better)
Translates to: TKERESKCGSHPSQQPLNGTQWS*PCLCLS
Trigger: ACTTAGACACAGACATGGTCAGCTCCACTGTGTTCC...ATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
3UTR CAA 72 bp ACCACATGCATAGGGCTAGACTGGTCAGCTTCTCTCTaGGCTTCCCTTGGTATACTGTTGATTAAAGCTCTG +
Preference number: 4 (lower is better)
Translates to: TTCIGLDWSASL*ASLGILLIKAL
Trigger: CAGAGCTTTAATCAACAGTATACCAAGGGAAGCCAAGAGAGAAGCTGACCAGTCTAGCCCTATGCATGTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR TCA 90 bp ACAAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATGGTCTTCTCACAAACTaGGCACTTGAAAGGACGAGA +
Preference number: 4 (lower is better)
Translates to: TKERESKCGSHPSQQPLNGLLTN*ALERTR
Trigger: TCTCGTCCTTTCAAGTGCTCAGTTTGTGAGAAGACC...ATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CCA 90 bp CCGACAGGCAGGGCAGAGGTCGATGTGGGTGCGGGTGACTCTCGCTaGCTGTCACTCAGCTGGGCTGGGTCCTCGGGTGTGAGGTGGGGG +
Preference number: 5 (lower is better)
Translates to: PTGRAEVDVGAGDSR*LSLSWAGSSGVRWG
Trigger: CCCCCACCTCACACCCGAGGACCCAGCCCAGCTGAGTGACAGCCAGCGAGAGTCACCCGCACCCACATCGACCTCTGCCCTGCCTGTCGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CCA 90 bp TCGAGCCTGGATGACAGAGGCTGTGGACAGCCGCTGACTGCGGGTTaGTCGCCCTATGCCAGCAGTACCCACTCGTCCAGGGCCAAAGGG +
Preference number: 5 (lower is better)
Translates to: SSLDDRGCGQPLTAG*SPYASSTHSSRAKG
Trigger: CCCTTTGGCCCTGGACGAGTGGGTACTGCTGGCATAGGGCGACCAACCCGCAGTCAGCGGCTGTCCACAGCCTCTGTCATCCAGGCTCGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS GCA 90 bp TACCCACTCGTCCAGGGCCAAAGGGCTTGCCAGCTCGCTTCAGTTTaGGGCGACAGAGGGCTGCCAACTCAGGCAGCTGGAGGTAGCTGG +
Preference number: 5 (lower is better)
Translates to: YPLVQGQRACQLASV*GDRGLPTQAAGGSW
Trigger: CCAGCTACCTCCAGCTGCCTGAGTTGGCAGCCCTCTGTCGCCGCAAACTGAAGCGAGCTGGCAAGCCCTTTGGCCCTGGACGAGTGGGTA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS GCA 90 bp GTCGCCCTATGCCAGCAGTACCCACTCGTCCAGGGCCAAAGGGCTTaGCAGCTCGCTTCAGTTTGCGGCGACAGAGGGCTGCCAACTCAG +
Preference number: 5 (lower is better)
Translates to: VALCQQYPLVQGQRA*QLASVCGDRGLPTQ
Trigger: CTGAGTTGGCAGCCCTCTGTCGCCGCAAACTGAAGCGAGCTGGCAAGCCCTTTGGCCCTGGACGAGTGGGTACTGCTGGCATAGGGCGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS GCA 90 bp TGGGCTCCTCAGGAGTGGCCCCCAGCTCAACAAATGAGGCACTATTaGCGACAGGCAGGGCAGAGGTCGATGTGGGTGCGGGTGACTCTC +
Preference number: 5 (lower is better)
Translates to: WAPQEWPPAQQMRHY*RQAGQRSMWVRVTL
Trigger: GAGAGTCACCCGCACCCACATCGACCTCTGCCCTGCCTGTCGGCAATAGTGCCTCATTTGTTGAGCTGGGGGCCACTCCTGAGGAGCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp CTGAATGTAGGCTCCAGGGTCTCTGAGGGGTGGAGGCAAGCAGGGGATGACTCTCCAGCTCGCTTCAGTTaGCGGCGACAGAGGGCTGCC +
Preference number: 5 (lower is better)
Translates to: LNVGSRVSEGWRQAGDDSPARFS*RRQRAA
Trigger: GGCAGCCCTCTGTCGCCGCAAACTGAAGCGAGCTGG...AGAGTCATCCCCTGCTTGCCTCCACCCCTCAGAGACCCTGGAGCCTACATTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp ACAGGCACTATGTGGAGGTTTGGCCAGGTGCCCTCACTCCCACACCCAACACTCGAATGCCGGAGGCTCTaGCGAGGCTGCCCACCCTGT +
Preference number: 5 (lower is better)
Translates to: TGTMWRFGQVPSLPHPTLECRRL*RGCPPC
Trigger: ACAGGGTGGGCAGCCTCGCAAGAGCCTCCGGCATTC...GAGTGTTGGGTGTGGGAGTGAGGGCACCTGGCCAAACCTCCACATAGTGCCTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS GCA 90 bp CATAGCCTTCCTGCCGGTATACATAGTGGGCGCCAGTATGGCCGCTaGCCCCCTCACTCCCACTCTGCCCACTGTCCTCACTCCCATCTT +
Preference number: 5 (lower is better)
Translates to: HSLPAGIHSGRQYGR*PPHSHSAHCPHSHL
Trigger: AAGATGGGAGTGAGGACAGTGGGCAGAGTGGGAGTGAGGGGGGCAGCGGCCATACTGGCGCCCACTATGTATACCGGCAGGAAGGCTATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CCA 90 bp CCCTTGGCCCTCTGCTGGTTCAGCTGTAGCAGGAGCTGTTTTGAATaGCTGGGAAGCTCCATGTCTGGCCCCATGTCCCTGTGCCCTGCC +
Preference number: 5 (lower is better)
Translates to: PLALCWFSCSRSCFE*LGSSMSGPMSLCPA
Trigger: GGCAGGGCACAGGGACATGGGGCCAGACATGGAGCTTCCCAGCCATTCAAAACAGCTCCTGCTACAGCTGAACCAGCAGAGGGCCAAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CCA 90 bp CAACAAATGAGGCACTATTGCCGACAGGCAGGGCAGAGGTCGATGTaGGTGCGGGTGACTCTCGCTGGCTGTCACTCAGCTGGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: QQMRHYCRQAGQRSM*VRVTLAGCHSAGLG
Trigger: ACCCAGCCCAGCTGAGTGACAGCCAGCGAGAGTCACCCGCACCCACATCGACCTCTGCCCTGCCTGTCGGCAATAGTGCCTCATTTGTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp GGCTCCAGGGTCTCTGAGGGGTGGAGGCAAGCAGGGGATGACTCTGGAATTTTTCCCCCACTACTCCCATaGGTGCTGGTGCTGCAGCCC +
Preference number: 5 (lower is better)
Translates to: GSRVSEGWRQAGDDSGIFPPLLP*VLVLQP
Trigger: GGGCTGCAGCACCAGCACCAATGGGAGTAGTGGGGG...AAAAATTCCAGAGTCATCCCCTGCTTGCCTCCACCCCTCAGAGACCCTGGAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS TCA 90 bp TTCCACATCCATGGGCTCCTCAGGAGTGGCCCCCAGCTCAACAAATaGGGCACTATTGCCGACAGGCAGGGCAGAGGTCGATGTGGGTGC +
Preference number: 5 (lower is better)
Translates to: FHIHGLLRSGPQLNK*GTIADRQGRGRCGC
Trigger: GCACCCACATCGACCTCTGCCCTGCCTGTCGGCAATAGTGCCTCATTTGTTGAGCTGGGGGCCACTCCTGAGGAGCCCATGGATGTGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp ACAGGCACTATGTGGAGGTTTGGCCAGGTGCCCTCACTCCCACACCCAACACTCTCACACAGGAAGCCCTaGGCCCTCTGCTGGTTCAGC +
Preference number: 5 (lower is better)
Translates to: TGTMWRFGQVPSLPHPTLSHRKP*ALCWFS
Trigger: GCTGAACCAGCAGAGGGCCAAGGGCTTCCTGTGTGA...GAGTGTTGGGTGTGGGAGTGAGGGCACCTGGCCAAACCTCCACATAGTGCCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp CTGCAGATGAGGGTACCTACAGCCTGGGAGGCCACACAGACCTTGTGTCCTAGGCCAGGGCCAAAGGGCTaGCCAGCTCGCTTCAGTTTG +
Preference number: 5 (lower is better)
Translates to: LQMRVPTAWEATQTLCPRPGPKG*PARFSL
Trigger: CAAACTGAAGCGAGCTGGCAAGCCCTTTGGCCCTGG...CCTAGGACACAAGGTCTGTGTGGCCTCCCAGGCTGTAGGTACCCTCATCTGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp CAGATGAGGGTACCTACAGCCTGGGAGGCCACACAGACCTTGTGTCCTAGGCCTCCAGGGCCAAAGGGCTaGCCAGCTCGCTTCAGTTTG +
Preference number: 5 (lower is better)
Translates to: QMRVPTAWEATQTLCPRPPGPKG*PARFSL
Trigger: CAAACTGAAGCGAGCTGGCAAGCCCTTTGGCCCTGG...AGGCCTAGGACACAAGGTCTGTGTGGCCTCCCAGGCTGTAGGTACCCTCATCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp AGATTCCCAGTGAGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGGAATGCCGGAGGCTCTaGCGAGGCTGCCCACCCTGT +
Preference number: 5 (lower is better)
Translates to: RFPVRADGELAQYTGTMWECRRL*RGCPPC
Trigger: ACAGGGTGGGCAGCCTCGCAAGAGCCTCCGGCATTC...CCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCTCACTGGGAATCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS TCA 90 bp GGTGTCCTTTACGCACATCTACAAGCCCTGGAAATCGAGCCTGGATaGCAGAGGCTGTGGACAGCCGCTGACTGCGGGTTGGTCGCCCTA +
Preference number: 5 (lower is better)
Translates to: GVLYAHLQALEIEPG*QRLWTAADCGLVAL
Trigger: TAGGGCGACCAACCCGCAGTCAGCGGCTGTCCACAGCCTCTGTCATCCAGGCTCGATTTCCAGGGCTTGTAGATGTGCGTAAAGGACACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp GGTGGGGAGCAGAGGCCAGCATGCCCTGCTATTTCACTGGGTAGAATAGTGCCTCTAGCCAGAACGCCATaGGGAACCCTGTCCCCAGTC +
Preference number: 5 (lower is better)
Translates to: GGEQRPACPAISLGRIVPLARTP*GTLSPV
Trigger: GACTGGGGACAGGGTTCCCAATGGCGTTCTGGCTAG...AGGCACTATTCTACCCAGTGAAATAGCAGGGCATGCTGGCCTCTGCTCCCCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp CTGAATGTAGGCTCCAGGGTCTCTGAGGGGTGGAGGCAAGCAGGGGATGACTCTTTCTCCTCCTCCTCCTaGCAGGGGAATGACTGCTCC +
Preference number: 5 (lower is better)
Translates to: LNVGSRVSEGWRQAGDDSFSSSS*QGNDCS
Trigger: GGAGCAGTCATTCCCCTGCAAGGAGGAGGAGGAGAA...AGAGTCATCCCCTGCTTGCCTCCACCCCTCAGAGACCCTGGAGCCTACATTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp AGATTCCCAGTGAGGGCTGATGGAGAGCTGGCTCAGTACACAGGCACTATGTGGTCACACAGGAAGCCCTaGGCCCTCTGCTGGTTCAGC +
Preference number: 5 (lower is better)
Translates to: RFPVRADGELAQYTGTMWSHRKP*ALCWFS
Trigger: GCTGAACCAGCAGAGGGCCAAGGGCTTCCTGTGTGA...CCACATAGTGCCTGTGTACTGAGCCAGCTCTCCATCAGCCCTCACTGGGAATCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp GGCTCCAGGGTCTCTGAGGGGTGGAGGCAAGCAGGGGATGACTCTGGAATTTTTGCAGCCAGGACATTCTaGTGGGCCCGGAAGATAGAG +
Preference number: 5 (lower is better)
Translates to: GSRVSEGWRQAGDDSGIFAARTF*WARKIE
Trigger: CTCTATCTTCCGGGCCCACAAGAATGTCCTGGCTGC...AAAAATTCCAGAGTCATCCCCTGCTTGCCTCCACCCCTCAGAGACCCTGGAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp CCCATCTGGGACAGAACACAGACACTCTTGGTCTTGCCTTGCCCCTTGCAGAAGCTAGCCAGAACGCCATaGGGAACCCTGTCCCCAGTC +
Preference number: 5 (lower is better)
Translates to: PIWDRTQTLLVLPCPLQKLARTP*GTLSPV
Trigger: GACTGGGGACAGGGTTCCCAATGGCGTTCTGGCTAG...CTTCTGCAAGGGGCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CCA 90 bp TCTCCTGAGTGGAGGTGCCCAGAAAAAGCTCATCATCTGAGCCTTTaGCCTGAGGGAGCTCCTGGGGAGCAGGGTGTCCTTTACGCACAT +
Preference number: 5 (lower is better)
Translates to: SPEWRCPEKAHHLSL*PEGAPGEQGVLYAH
Trigger: ATGTGCGTAAAGGACACCCTGCTCCCCAGGAGCTCCCTCAGGCCAAAGGCTCAGATGATGAGCTTTTTCTGGGCACCTCCACTCAGGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp GCTCATAAAAGGGAGCTGCTCCTTCCTAATGGCTTCTGCCTGTTACTCAGATGCCCCCCACTACTCCCATaGGTGCTGGTGCTGCAGCCC +
Preference number: 5 (lower is better)
Translates to: AHKRELLLPNGFCLLLRCPPLLP*VLVLQP
Trigger: GGGCTGCAGCACCAGCACCAATGGGAGTAGTGGGGG...GCATCTGAGTAACAGGCAGAAGCCATTAGGAAGGAGCAGCTCCCTTTTATGAGC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CAA 90 bp GTGGCTCAGCCTCAACTGTACTGGGTATTGAATTCAAGAGGTAGCAAAGGTCAGCCAGCTCGCTTCAGTTaGCGGCGACAGAGGGCTGCC +
Preference number: 5 (lower is better)
Translates to: VAQPQLYWVLNSRGSKGQPARFS*RRQRAA
Trigger: GGCAGCCCTCTGTCGCCGCAAACTGAAGCGAGCTGG...CTGACCTTTGCTACCTCTTGAATTCAATACCCAGTACAGTTGAGGCTGAGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CAA 90 bp CTGAATGTAGGCTCCAGGGTCTCTGAGGGGTGGAGGCAAGCAGGGGATGACTCTTTGTTCCAATCTTTTTaGCGGGCTGAATGCCGGAGG +
Preference number: 5 (lower is better)
Translates to: LNVGSRVSEGWRQAGDDSLFQSF*RAECRR
Trigger: CCTCCGGCATTCAGCCCGCAAAAAAGATTGGAACAA...AGAGTCATCCCCTGCTTGCCTCCACCCCTCAGAGACCCTGGAGCCTACATTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp CTGAATGTAGGCTCCAGGGTCTCTGAGGGGTGGAGGCAAGCAGGGGATGACTCTTCACAAACTGAGCACTaGAAAGGACGAGAGTCAGCT +
Preference number: 5 (lower is better)
Translates to: LNVGSRVSEGWRQAGDDSSQTEH*KGRESA
Trigger: AGCTGACTCTCGTCCTTTCAAGTGCTCAGTTTGTGA...AGAGTCATCCCCTGCTTGCCTCCACCCCTCAGAGACCCTGGAGCCTACATTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp GATTTTCTGCAGATGAGGGTACCTACAGCCTGGGAGGCCACACAGACCTTGTGTTTGTTCCAATCTTTTTaGCGGGCTGAATGCCGGAGG +
Preference number: 5 (lower is better)
Translates to: DFLQMRVPTAWEATQTLCLFQSF*RAECRR
Trigger: CCTCCGGCATTCAGCCCGCAAAAAAGATTGGAACAA...ACACAAGGTCTGTGTGGCCTCCCAGGCTGTAGGTACCCTCATCTGCAGAAAATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp GATAAGGTCTATAGGCCCATCTGGGACAGAACACAGACACTCTTGGTCTTGCCTGATGAGGTTGCGCTGTaGGGTGAACTTGCCTCCACA +
Preference number: 5 (lower is better)
Translates to: DKVYRPIWDRTQTLLVLPDEVAL*GELAST
Trigger: TGTGGAGGCAAGTTCACCCAACAGCGCAACCTCATC...AGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGACCTTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS-3UTR CAA 90 bp AAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATCTGCAGCCAGGACATTCTaGTGGGCCCGGAAGATAGAG +
Preference number: 5 (lower is better)
Translates to: KGKRIQVWIPPIPTTLKSAARTF*WARKIE
Trigger: CTCTATCTTCCGGGCCCACAAGAATGTCCTGGCTGC...AGATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp AAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATCTTTCTCCTCCTCCTCCTaGCAGGGGAATGACTGCTCC +
Preference number: 5 (lower is better)
Translates to: KGKRIQVWIPPIPTTLKSFSSSS*QGNDCS
Trigger: GGAGCAGTCATTCCCCTGCAAGGAGGAGGAGGAGAA...AGATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp CTCAGATGCTCAGTCAGAGAACTAAGATTCCCAGTGAGGGCTGATGGAGAGCTGTCACAAACTGAGCACTaGAAAGGACGAGAGTCAGCT +
Preference number: 5 (lower is better)
Translates to: LRCSVRELRFPVRADGELSQTEH*KGRESA
Trigger: AGCTGACTCTCGTCCTTTCAAGTGCTCAGTTTGTGA...CAGCTCTCCATCAGCCCTCACTGGGAATCTTAGTTCTCTGACTGAGCATCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp AAGGTCTATAGGCCCATCTGGGACAGAACACAGACACTCTTGGTCTTGCCTTGCATGTCTGTGTCTAAGTaGATGAGGTTATCATGCAGG +
Preference number: 5 (lower is better)
Translates to: KVYRPIWDRTQTLLVLPCMSVSK*MRLSCR
Trigger: CCTGCATGATAACCTCATCAACTTAGACACAGACAT...GCAAGGCAAGACCAAGAGTGTCTGTGTTCTGTCCCAGATGGGCCTATAGACCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS-3UTR CAA 90 bp AAAGGAAAGAGAATCCAAGTGTGGATCCCACCCATCCCAACAACCCTTAAATCTATCTTTCCACAAATGTaGCAGGGGAACGGACGGGTC +
Preference number: 5 (lower is better)
Translates to: KGKRIQVWIPPIPTTLKSIFPQM*QGNGRV
Trigger: GACCCGTCCGTTCCCCTGCAACATTTGTGGAAAGAT...AGATTTAAGGGTTGTTGGGATGGGTGGGATCCACACTTGGATTCTCTTTCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090190.14
CDS TCA 72 bp GCCGACAGGCAGGGCAGAGGTCGATGTGGGTGCGGGTaGCTCTCGCTGGCTGTCACTCAGCTGGGCTGGGTC +
Preference number: 6 (lower is better)
Translates to: ADRQGRGRCGCG*LSLAVTQLGWV
Trigger: GACCCAGCCCAGCTGAGTGACAGCCAGCGAGAGTCACCCGCACCCACATCGACCTCTGCCCTGCCTGTCGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS GCA 72 bp CTGTGGACAGCCGCTGACTGCGGGTTGGTCGCCCTATaGCAGCAGTACCCACTCGTCCAGGGCCAAAGGGCT +
Preference number: 6 (lower is better)
Translates to: LWTAADCGLVAL*QQYPLVQGQRA
Trigger: AGCCCTTTGGCCCTGGACGAGTGGGTACTGCTGGCATAGGGCGACCAACCCGCAGTCAGCGGCTGTCCACAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CAA 72 bp CGTCCAGGGCCAAAGGGCTTGCCAGCTCGCTTCAGTTaGCGGCGACAGAGGGCTGCCAACTCAGGCAGCTGG +
Preference number: 6 (lower is better)
Translates to: RPGPKGLPARFS*RRQRAANSGSW
Trigger: CCAGCTGCCTGAGTTGGCAGCCCTCTGTCGCCGCAAACTGAAGCGAGCTGGCAAGCCCTTTGGCCCTGGACG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS GCA 72 bp TGCCAGCAGTACCCACTCGTCCAGGGCCAAAGGGCTTaGCAGCTCGCTTCAGTTTGCGGCGACAGAGGGCTG +
Preference number: 6 (lower is better)
Translates to: CQQYPLVQGQRA*QLASVCGDRGL
Trigger: CAGCCCTCTGTCGCCGCAAACTGAAGCGAGCTGGCAAGCCCTTTGGCCCTGGACGAGTGGGTACTGCTGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CCA 72 bp GATGACAGAGGCTGTGGACAGCCGCTGACTGCGGGTTaGTCGCCCTATGCCAGCAGTACCCACTCGTCCAGG +
Preference number: 6 (lower is better)
Translates to: DDRGCGQPLTAG*SPYASSTHSSR
Trigger: CCTGGACGAGTGGGTACTGCTGGCATAGGGCGACCAACCCGCAGTCAGCGGCTGTCCACAGCCTCTGTCATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CAA 90 bp GGTCGCCCTATGCCAGCAGTACCCACTCGTCCAGGGCCAAAGGGCTaGCCAGCTCGCTTCAGTTTGCGGCGACAGAGGGCTGCCAACTCA +
Preference number: 6 (lower is better)
Translates to: GRPMPAVPTRPGPKG*PARFSLRRQRAANS
Trigger: TGAGTTGGCAGCCCTCTGTCGCCGCAAACTGAAGCGAGCTGGCAAGCCCTTTGGCCCTGGACGAGTGGGTACTGCTGGCATAGGGCGACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS GCA 72 bp CAGGAGTGGCCCCCAGCTCAACAAATGAGGCACTATTaGCGACAGGCAGGGCAGAGGTCGATGTGGGTGCGG +
Preference number: 6 (lower is better)
Translates to: QEWPPAQQMRHY*RQAGQRSMWVR
Trigger: CCGCACCCACATCGACCTCTGCCCTGCCTGTCGGCAATAGTGCCTCATTTGTTGAGCTGGGGGCCACTCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CCA 72 bp AGGCACTATTGCCGACAGGCAGGGCAGAGGTCGATGTaGGTGCGGGTGACTCTCGCTGGCTGTCACTCAGCT +
Preference number: 6 (lower is better)
Translates to: RHYCRQAGQRSM*VRVTLAGCHSA
Trigger: AGCTGAGTGACAGCCAGCGAGAGTCACCCGCACCCACATCGACCTCTGCCCTGCCTGTCGGCAATAGTGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CAA 72 bp ATGCCAGCAGTACCCACTCGTCCAGGGCCAAAGGGCTaGCCAGCTCGCTTCAGTTTGCGGCGACAGAGGGCT +
Preference number: 6 (lower is better)
Translates to: MPAVPTRPGPKG*PARFSLRRQRA
Trigger: AGCCCTCTGTCGCCGCAAACTGAAGCGAGCTGGCAAGCCCTTTGGCCCTGGACGAGTGGGTACTGCTGGCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CAA 72 bp GGGCCACCTCCACCAGCACTGCTAGCCAGAACGCCATaGGGAACCCTGTCCCCAGTCCCTTCACCTTCTTCC +
Preference number: 6 (lower is better)
Translates to: GPPPPALLARTP*GTLSPVPSPSS
Trigger: GGAAGAAGGTGAAGGGACTGGGGACAGGGTTCCCAATGGCGTTCTGGCTAGCAGTGCTGGTGGAGGTGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CAA 90 bp ATGGGCTCCTCAGGAGTGGCCCCCAGCTCAACAAATGAGGCACTATaGCCGACAGGCAGGGCAGAGGTCGATGTGGGTGCGGGTGACTCT +
Preference number: 6 (lower is better)
Translates to: MGSSGVAPSSTNEAL*PTGRAEVDVGAGDS
Trigger: AGAGTCACCCGCACCCACATCGACCTCTGCCCTGCCTGTCGGCAATAGTGCCTCATTTGTTGAGCTGGGGGCCACTCCTGAGGAGCCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS TCA 72 bp CATGGGCTCCTCAGGAGTGGCCCCCAGCTCAACAAATaGGGCACTATTGCCGACAGGCAGGGCAGAGGTCGA +
Preference number: 6 (lower is better)
Translates to: HGLLRSGPQLNK*GTIADRQGRGR
Trigger: TCGACCTCTGCCCTGCCTGTCGGCAATAGTGCCTCATTTGTTGAGCTGGGGGCCACTCCTGAGGAGCCCATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CAA 72 bp TCAGGAGTGGCCCCCAGCTCAACAAATGAGGCACTATaGCCGACAGGCAGGGCAGAGGTCGATGTGGGTGCG +
Preference number: 6 (lower is better)
Translates to: SGVAPSSTNEAL*PTGRAEVDVGA
Trigger: CGCACCCACATCGACCTCTGCCCTGCCTGTCGGCAATAGTGCCTCATTTGTTGAGCTGGGGGCCACTCCTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS TCA 72 bp CTCCTGAGTGGAGGTGCCCAGAAAAAGCTCATCATCTaGGCCTTTGGCCTGAGGGAGCTCCTGGGGAGCAGG +
Preference number: 6 (lower is better)
Translates to: LLSGGAQKKLII*AFGLRELLGSR
Trigger: CCTGCTCCCCAGGAGCTCCCTCAGGCCAAAGGCTCAGATGATGAGCTTTTTCTGGGCACCTCCACTCAGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS GCA 72 bp TTTTTGCGGGCTGAATGCCGGAGGCTCTTGCGAGGCTaGCCACCCTGTCCTTCCAGCAGACTCAGGTGGTTT +
Preference number: 6 (lower is better)
Translates to: FLRAECRRLLRG*PPCPSSRLRWF
Trigger: AAACCACCTGAGTCTGCTGGAAGGACAGGGTGGGCAGCCTCGCAAGAGCCTCCGGCATTCAGCCCGCAAAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS TCA 72 bp TACGCACATCTACAAGCCCTGGAAATCGAGCCTGGATaGCAGAGGCTGTGGACAGCCGCTGACTGCGGGTTG +
Preference number: 6 (lower is better)
Translates to: YAHLQALEIEPG*QRLWTAADCGL
Trigger: CAACCCGCAGTCAGCGGCTGTCCACAGCCTCTGTCATCCAGGCTCGATTTCCAGGGCTTGTAGATGTGCGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CCA 72 bp GCTGGTTCAGCTGTAGCAGGAGCTGTTTTGAATGGCTaGGAAGCTCCATGTCTGGCCCCATGTCCCTGTGCC +
Preference number: 6 (lower is better)
Translates to: AGSAVAGAVLNG*EAPCLAPCPCA
Trigger: GGCACAGGGACATGGGGCCAGACATGGAGCTTCCCAGCCATTCAAAACAGCTCCTGCTACAGCTGAACCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CCA 72 bp TGGAGGTGCCCAGAAAAAGCTCATCATCTGAGCCTTTaGCCTGAGGGAGCTCCTGGGGAGCAGGGTGTCCTT +
Preference number: 6 (lower is better)
Translates to: WRCPEKAHHLSL*PEGAPGEQGVL
Trigger: AAGGACACCCTGCTCCCCAGGAGCTCCCTCAGGCCAAAGGCTCAGATGATGAGCTTTTTCTGGGCACCTCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS GCA 72 bp CACTCCCACTCTGCCCACTGTCCTCACTCCCATCTTTaGCATTCTCCTCCTCCTCCTTGCAGGGGAATGACT +
Preference number: 6 (lower is better)
Translates to: HSHSAHCPHSHL*HSPPPPCRGMT
Trigger: AGTCATTCCCCTGCAAGGAGGAGGAGGAGAATGGCAAAGATGGGAGTGAGGACAGTGGGCAGAGTGGGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CCA 72 bp CTCTGCTGGTTCAGCTGTAGCAGGAGCTGTTTTGAATaGCTGGGAAGCTCCATGTCTGGCCCCATGTCCCTG +
Preference number: 6 (lower is better)
Translates to: LCWFSCSRSCFE*LGSSMSGPMSL
Trigger: CAGGGACATGGGGCCAGACATGGAGCTTCCCAGCCATTCAAAACAGCTCCTGCTACAGCTGAACCAGCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2
CDS CAA 72 bp GACCCAGCCACAGGTTCCTTTTTGTTCCAATCTTTTTaGCGGGCTGAATGCCGGAGGCTCTTGCGAGGCTGC +
Preference number: 6 (lower is better)
Translates to: DPATGSFLFQSF*RAECRRLLRGC
Trigger: GCAGCCTCGCAAGAGCCTCCGGCATTCAGCCCGCAAAAAAGATTGGAACAAAAAGGAACCTGTGGCTGGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000090190.14
ENSMUST00000232082.2