Pregenerated sensors for HIBADH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029776Ensembl transcript IDs: ENSMUST00000031788.9
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCAAAAGCAGACAGACGACCTTTGATTAGACCATTACTTCTAGAGTaGGCTAGAGGAAGCTCAGGACAGAGTTTGGTTCCTAACAGCGTC | + |
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Preference number: 1 (lower is better) Translates to: SKADRRPLIRPLLLE*ARGSSGQSLVPNSV Trigger: GACGCTGTTAGGAACCAAACTCTGTCCTGAGCTTCCTCTAGCTCACTCTAGAAGTAATGGTCTAATCAAAGGTCGTCTGTCTGCTTTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| 3UTR-3UTR TCA 90 bp | GAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGAGGGTACACTAAGATACTGTGCTGGCTAAACAGATaGAAGCGGCAGCATTTAAAA | + |
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Preference number: 2 (lower is better) Translates to: EASRLSVEAVTGGYTKILCWLNR*KRQHLK Trigger: TTTTAAATGCTGCCGCTTTCATCTGTTTAGCCAGCA...CAGTATCTTAGTGTACCCTCCTGTTACAGCTTCCACACTCAGCCGGCTTGCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| 3UTR-3UTR GCA 90 bp | GAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGAGGGTACACTAAGATACTGGAAATTCCCAGGGATTaGTGTGATGTAGACAATCAA | + |
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Preference number: 2 (lower is better) Translates to: EASRLSVEAVTGGYTKILEIPRD*CDVDNQ Trigger: TTGATTGTCTACATCACAGCAATCCCTGGGAATTTC...CAGTATCTTAGTGTACCCTCCTGTTACAGCTTCCACACTCAGCCGGCTTGCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| 3UTR-3UTR CCA 90 bp | TGCTCAATTTTGTTGAAGGTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGGCTCAGGACAGAGTTTaGTTCCTAACAGCGTCCACG | + |
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Preference number: 2 (lower is better) Translates to: CSILLKVLKAQTSKRSTGAQDRV*FLTAST Trigger: CGTGGACGCTGTTAGGAACCAAACTCTGTCCTGAGC...CCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCACCTTCAACAAAATTGAGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| 3UTR-3UTR TCA 90 bp | GTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGCTAGTTAGTGAAACCATTTCCCAGGGATTGCTGTaGTGTAGACAATCAAAAGCA | + |
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Preference number: 2 (lower is better) Translates to: VLKAQTSKRSTGLVSETISQGLL*CRQSKA Trigger: TGCTTTTGATTGTCTACATCACAGCAATCCCTGGGA...AATGGTTTCACTAACTAGCCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| 3UTR-3UTR CCA 90 bp | TGCTCAATTTTGTTGAAGGTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGCGGCAGCATTTAAAATaGATAGAAATTCCCAGGGAT | + |
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Preference number: 2 (lower is better) Translates to: CSILLKVLKAQTSKRSTGRQHLK*IEIPRD Trigger: ATCCCTGGGAATTTCTATCCATTTTAAATGCTGCCG...CCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCACCTTCAACAAAATTGAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| 3UTR-3UTR CAA 90 bp | GAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGAGGGTACACTAAGATACTGTCAGAGTGCTCAATTTaGTTGAAGGTGCTCAAGGCT | + |
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Preference number: 3 (lower is better) Translates to: EASRLSVEAVTGGYTKILSECSI*LKVLKA Trigger: AGCCTTGAGCACCTTCAACAAAATTGAGCACTCTGA...CAGTATCTTAGTGTACCCTCCTGTTACAGCTTCCACACTCAGCCGGCTTGCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| 3UTR TCA 72 bp | GACAGACGACCTTTGATTAGACCATTACTTCTAGAGTaGGCTAGAGGAAGCTCAGGACAGAGTTTGGTTCCT | + |
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Preference number: 3 (lower is better) Translates to: DRRPLIRPLLLE*ARGSSGQSLVP Trigger: AGGAACCAAACTCTGTCCTGAGCTTCCTCTAGCTCACTCTAGAAGTAATGGTCTAATCAAAGGTCGTCTGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| 3UTR TCA 72 bp | CAAAGTGGATATCCTAATCAGAGTGCTCAATTTTGTTaGAGGTGCTCAAGGCTCAAACTTCAAAAAGGTCAA | + |
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Preference number: 3 (lower is better) Translates to: QSGYPNQSAQFC*RCSRLKLQKGQ Trigger: TTGACCTTTTTGAAGTTTGAGCCTTGAGCACCTTCAACAAAATTGAGCACTCTGATTAGGATATCCACTTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR GCA 90 bp | GAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGAGGGTACACTAAGATACTGCCACGTTGGAGCCCATaGATTCCAGCAACTCTTGGG | + |
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Preference number: 4 (lower is better) Translates to: EASRLSVEAVTGGYTKILPRWSP*IPATLG Trigger: CCCAAGAGTTGCTGGAATGCATGGGCTCCAACGTGG...CAGTATCTTAGTGTACCCTCCTGTTACAGCTTCCACACTCAGCCGGCTTGCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR TCA 90 bp | GAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGAGGGTACACTAAGATACTGCTGGTGGCAGAGTCTTaGGCCAATCCCAGATCCTTA | + |
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Preference number: 4 (lower is better) Translates to: EASRLSVEAVTGGYTKILLVAES*ANPRSL Trigger: TAAGGATCTGGGATTGGCTCAAGACTCTGCCACCAG...CAGTATCTTAGTGTACCCTCCTGTTACAGCTTCCACACTCAGCCGGCTTGCTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR TCA 90 bp | GAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGAGGGTACACTAAGATACTGAGTCTTAGAAGCCATTaGCCTAGAACACACCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: EASRLSVEAVTGGYTKILSLRSH*PRTHRC Trigger: GCAGCGGTGTGTTCTAGGTCAATGGCTTCTAAGACT...CAGTATCTTAGTGTACCCTCCTGTTACAGCTTCCACACTCAGCCGGCTTGCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR TCA 90 bp | GAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGAGGGTACACTAAGATACTGAGACAGGGGCGTCCATaGAAACAGCTCCCATTTTCT | + |
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Preference number: 4 (lower is better) Translates to: EASRLSVEAVTGGYTKILRQGRP*KQLPFS Trigger: AGAAAATGGGAGCTGTTTTCATGGACGCCCCTGTCT...CAGTATCTTAGTGTACCCTCCTGTTACAGCTTCCACACTCAGCCGGCTTGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR TCA 90 bp | GAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGAGGGTACACTAAGATACTGATCATCCTGTATATCTaGTGGGCCAGGCTTCCTAGG | + |
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Preference number: 4 (lower is better) Translates to: EASRLSVEAVTGGYTKILIILYI*WARLPR Trigger: CCTAGGAAGCCTGGCCCATCAGATATACAGGATGAT...CAGTATCTTAGTGTACCCTCCTGTTACAGCTTCCACACTCAGCCGGCTTGCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CCA 90 bp | GAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGAGGGTACACTAAGATACTGCACAGTATACCACGTTaGAGCCCATGCATTCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: EASRLSVEAVTGGYTKILHSIPR*SPCIPA Trigger: TGCTGGAATGCATGGGCTCCAACGTGGTATACTGTG...CAGTATCTTAGTGTACCCTCCTGTTACAGCTTCCACACTCAGCCGGCTTGCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR TCA 90 bp | GAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGAGGGTACACTAAGATACTGTTGGTAGTTATTGGATaGGGGGACCCCATGCATAAC | + |
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Preference number: 4 (lower is better) Translates to: EASRLSVEAVTGGYTKILLVVIG*GDPMHN Trigger: GTTATGCATGGGGTCCCCTCATCCAATAACTACCAA...CAGTATCTTAGTGTACCCTCCTGTTACAGCTTCCACACTCAGCCGGCTTGCTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR GCA 90 bp | TGCTCAATTTTGTTGAAGGTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGTTCTGCTGGGGAGGATaGTACCTGTTCCCCAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: CSILLKVLKAQTSKRSTGFCWGG*YLFPSL Trigger: GAGGCTGGGGAACAGGTAGCATCCTCCCCAGCAGAA...CCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCACCTTCAACAAAATTGAGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CCA 90 bp | GAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGAGGGTACACTAAGATACTGTCCTCCCGTAGATACTaGAACACAGATGAGAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: EASRLSVEAVTGGYTKILSSRRY*NTDEKS Trigger: AGACTTCTCATCTGTGTTCCAGTATCTACGGGAGGA...CAGTATCTTAGTGTACCCTCCTGTTACAGCTTCCACACTCAGCCGGCTTGCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CCA 90 bp | GAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGAGGGTACACTAAGATACTGGTCATAGAGGATGAGTaGATAGCCATGTTTCATGAG | + |
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Preference number: 4 (lower is better) Translates to: EASRLSVEAVTGGYTKILVIEDE*IAMFHE Trigger: CTCATGAAACATGGCTATCCACTCATCCTCTATGAC...CAGTATCTTAGTGTACCCTCCTGTTACAGCTTCCACACTCAGCCGGCTTGCTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CCA 90 bp | GTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGCTAGTTAGTGAAACCATTTTGGGGTCTTGGTGCTaGTGGCAGAGTCTTGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: VLKAQTSKRSTGLVSETILGSWC*WQSLEP Trigger: TGGCTCAAGACTCTGCCACCAGCACCAAGACCCCAA...AATGGTTTCACTAACTAGCCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR GCA 90 bp | TGCTCAATTTTGTTGAAGGTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGGAATTGGGGTCTTGGTaGTGGTGGCAGAGTCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: CSILLKVLKAQTSKRSTGELGSW*WWQSLE Trigger: CTCAAGACTCTGCCACCAGCACCAAGACCCCAATTC...CCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCACCTTCAACAAAATTGAGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CCA 90 bp | GTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGCTAGTTAGTGAAACCATTGGAGAATTGGGGTCTTaGTGCTGGTGGCAGAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: VLKAQTSKRSTGLVSETIGELGS*CWWQSL Trigger: AAGACTCTGCCACCAGCACCAAGACCCCAATTCTCC...AATGGTTTCACTAACTAGCCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR GCA 90 bp | TGCTCAATTTTGTTGAAGGTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGGTTGTTGCAGATCTTTaGAGACTGCCCCGTTCCAAC | + |
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Preference number: 4 (lower is better) Translates to: CSILLKVLKAQTSKRSTGVVADL*RLPRSN Trigger: GTTGGAACGGGGCAGTCTGCAAAGATCTGCAACAAC...CCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCACCTTCAACAAAATTGAGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR GCA 90 bp | GTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGCTAGTTAGTGAAACCATTCCAACAGCATGTTGTTaGAGATCTTTGCAGACTGCC | + |
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Preference number: 4 (lower is better) Translates to: VLKAQTSKRSTGLVSETIPTACC*RSLQTA Trigger: GGCAGTCTGCAAAGATCTGCAACAACATGCTGTTGG...AATGGTTTCACTAACTAGCCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR TCA 90 bp | TGCTCAATTTTGTTGAAGGTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGACACGTCATAGAGGATaGGTGGATAGCCATGTTTCA | + |
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Preference number: 4 (lower is better) Translates to: CSILLKVLKAQTSKRSTGTRHRG*VDSHVS Trigger: TGAAACATGGCTATCCACTCATCCTCTATGACGTGT...CCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCACCTTCAACAAAATTGAGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS TCA 90 bp | CATGTTTCCCAGTCCAATGAATCCAACTGGAGTCTTAGAAGCCATTaGCCTAGAACACACCGCTGCAAGGCTGCCCACGGGCCGCCGCCG | + |
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Preference number: 5 (lower is better) Translates to: HVSQSNESNWSLRSH*PRTHRCKAAHGPPP Trigger: CGGCGGCGGCCCGTGGGCAGCCTTGCAGCGGTGTGTTCTAGGTCAATGGCTTCTAAGACTCCAGTTGGATTCATTGGACTGGGAAACATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CAA 90 bp | GAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGAGGGTACACTAAGATACTGCCACAGTATACCACGTaGGAGCCCATGCATTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: EASRLSVEAVTGGYTKILPQYTT*EPMHSS Trigger: GCTGGAATGCATGGGCTCCAACGTGGTATACTGTGG...CAGTATCTTAGTGTACCCTCCTGTTACAGCTTCCACACTCAGCCGGCTTGCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CAA 90 bp | GAAGCAAGCCGGCTGAGTGTGGAAGCTGTAACAGGAGGGTACACTAAGATACTGTGTTGTTGCAGATCTTaGCAGACTGCCCCGTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: EASRLSVEAVTGGYTKILCCCRS*QTAPFQ Trigger: TTGGAACGGGGCAGTCTGCAAAGATCTGCAACAACA...CAGTATCTTAGTGTACCCTCCTGTTACAGCTTCCACACTCAGCCGGCTTGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CAA 90 bp | GTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGCTAGTTAGTGAAACCATTGCTGGTGGCAGAGTCTaGAGCCAATCCCAGATCCTT | + |
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Preference number: 5 (lower is better) Translates to: VLKAQTSKRSTGLVSETIAGGRV*SQSQIL Trigger: AAGGATCTGGGATTGGCTCAAGACTCTGCCACCAGC...AATGGTTTCACTAACTAGCCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CAA 90 bp | GTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGCTAGTTAGTGAAACCATTAGGAGAATTGGGGTCTaGGTGCTGGTGGCAGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: VLKAQTSKRSTGLVSETIRRIGV*VLVAES Trigger: AGACTCTGCCACCAGCACCAAGACCCCAATTCTCCT...AATGGTTTCACTAACTAGCCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CAA 90 bp | GTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGCTAGTTAGTGAAACCATTGCATTCCAGCAACTCTaGGGCAGCAGCAAACTCATC | + |
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Preference number: 5 (lower is better) Translates to: VLKAQTSKRSTGLVSETIAFQQL*GSSKLI Trigger: GATGAGTTTGCTGCTGCCCAAGAGTTGCTGGAATGC...AATGGTTTCACTAACTAGCCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CAA 90 bp | GTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGCTAGTTAGTGAAACCATTGCCAACAGCATGTTGTaGCAGATCTTTGCAGACTGC | + |
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Preference number: 5 (lower is better) Translates to: VLKAQTSKRSTGLVSETIANSML*QIFADC Trigger: GCAGTCTGCAAAGATCTGCAACAACATGCTGTTGGC...AATGGTTTCACTAACTAGCCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CAA 90 bp | GTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGCTAGTTAGTGAAACCATTGCCTCTTTAAACTCCTaGCATACATCAGGGAACACG | + |
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Preference number: 5 (lower is better) Translates to: VLKAQTSKRSTGLVSETIASLNS*HTSGNT Trigger: CGTGTTCCCTGATGTATGCAAGGAGTTTAAAGAGGC...AATGGTTTCACTAACTAGCCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CAA 90 bp | GTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGCTAGTTAGTGAAACCATTATAGCCAACAGCATGTaGTTGCAGATCTTTGCAGAC | + |
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Preference number: 5 (lower is better) Translates to: VLKAQTSKRSTGLVSETIIANSM*LQIFAD Trigger: GTCTGCAAAGATCTGCAACAACATGCTGTTGGCTAT...AATGGTTTCACTAACTAGCCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CAA 90 bp | GTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGCTAGTTAGTGAAACCATTTCTTTGAGTAGCCCTTaGAACACATCATCCTGTATA | + |
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Preference number: 5 (lower is better) Translates to: VLKAQTSKRSTGLVSETISLSSP*NTSSCI Trigger: TATACAGGATGATGTGTTCAAAGGGCTACTCAAAGA...AATGGTTTCACTAACTAGCCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS-3UTR CAA 90 bp | GTGCTCAAGGCTCAAACTTCAAAAAGGTCAACTGGGCTAGTTAGTGAAACCATTATGAGAAGTCTTTCTTaGAGTAGCCCTTTGAACACA | + |
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Preference number: 5 (lower is better) Translates to: VLKAQTSKRSTGLVSETIMRSLS*SSPLNT Trigger: TGTGTTCAAAGGGCTACTCAAAGAAAGACTTCTCAT...AATGGTTTCACTAACTAGCCCAGTTGACCTTTTTGAAGTTTGAGCCTTGAGCAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS GCA 72 bp | GATGGGCCAGGCTTCCTAGGAGAATTGGGGTCTTGGTaGTGGTGGCAGAGTCTTGAGCCAATCCCAGATCCT | + |
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Preference number: 6 (lower is better) Translates to: DGPGFLGELGSW*WWQSLEPIPDP Trigger: AGGATCTGGGATTGGCTCAAGACTCTGCCACCAGCACCAAGACCCCAATTCTCCTAGGAAGCCTGGCCCATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS CCA 72 bp | TCTGATGGGCCAGGCTTCCTAGGAGAATTGGGGTCTTaGTGCTGGTGGCAGAGTCTTGAGCCAATCCCAGAT | + |
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Preference number: 6 (lower is better) Translates to: SDGPGFLGELGS*CWWQSLEPIPD Trigger: ATCTGGGATTGGCTCAAGACTCTGCCACCAGCACCAAGACCCCAATTCTCCTAGGAAGCCTGGCCCATCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS CAA 72 bp | TCCTGTATATCTGATGGGCCAGGCTTCCTAGGAGAATaGGGGTCTTGGTGCTGGTGGCAGAGTCTTGAGCCA | + |
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Preference number: 6 (lower is better) Translates to: SCISDGPGFLGE*GSWCWWQSLEP Trigger: TGGCTCAAGACTCTGCCACCAGCACCAAGACCCCAATTCTCCTAGGAAGCCTGGCCCATCAGATATACAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS CAA 72 bp | GTATACCACGTTGGAGCCCATGCATTCCAGCAACTCTaGGGCAGCAGCAAACTCATCTTCAACTCCTCCCAC | + |
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Preference number: 6 (lower is better) Translates to: VYHVGAHAFQQL*GSSKLIFNSSH Trigger: GTGGGAGGAGTTGAAGATGAGTTTGCTGCTGCCCAAGAGTTGCTGGAATGCATGGGCTCCAACGTGGTATAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS CAA 90 bp | AACACATCATCCTGTATATCTGATGGGCCAGGCTTCCTAGGAGAATaGGGGTCTTGGTGCTGGTGGCAGAGTCTTGAGCCAATCCCAGAT | + |
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Preference number: 6 (lower is better) Translates to: NTSSCISDGPGFLGE*GSWCWWQSLEPIPD Trigger: ATCTGGGATTGGCTCAAGACTCTGCCACCAGCACCAAGACCCCAATTCTCCTAGGAAGCCTGGCCCATCAGATATACAGGATGATGTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS TCA 72 bp | AGGAGAATTGGGGTCTTGGTGCTGGTGGCAGAGTCTTaGGCCAATCCCAGATCCTTAGCCATTAGTGTTGTT | + |
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Preference number: 6 (lower is better) Translates to: RRIGVLVLVAES*ANPRSLAISVV Trigger: AACAACACTAATGGCTAAGGATCTGGGATTGGCTCAAGACTCTGCCACCAGCACCAAGACCCCAATTCTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS CCA 72 bp | TGTGATAATCCTGTCAGCCTTTTCGGCTACTTCTGCTaGGGAGGATGCTACCTGTTCCCCAGCCTCTTTAAA | + |
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Preference number: 6 (lower is better) Translates to: CDNPVSLFGYFC*GGCYLFPSLFK Trigger: TTTAAAGAGGCTGGGGAACAGGTAGCATCCTCCCCAGCAGAAGTAGCCGAAAAGGCTGACAGGATTATCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS CAA 72 bp | GCGGTTCCAATCATACTTATAGCCAACAGCATGTTGTaGCAGATCTTTGCAGACTGCCCCGTTCCAACAGCT | + |
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Preference number: 6 (lower is better) Translates to: AVPIILIANSML*QIFADCPVPTA Trigger: AGCTGTTGGAACGGGGCAGTCTGCAAAGATCTGCAACAACATGCTGTTGGCTATAAGTATGATTGGAACCGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS CAA 90 bp | TTCATAGCTTCAGCGGTTCCAATCATACTTATAGCCAACAGCATGTaGTTGCAGATCTTTGCAGACTGCCCCGTTCCAACAGCTCCACAG | + |
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Preference number: 6 (lower is better) Translates to: FIASAVPIILIANSM*LQIFADCPVPTAPQ Trigger: CTGTGGAGCTGTTGGAACGGGGCAGTCTGCAAAGATCTGCAACAACATGCTGTTGGCTATAAGTATGATTGGAACCGCTGAAGCTATGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS CAA 90 bp | GCTCCTCCTCCCGTAGATACTGGAACACAGATGAGAAGTCTTTCTTaGAGTAGCCCTTTGAACACATCATCCTGTATATCTGATGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: APPPVDTGTQMRSLS*SSPLNTSSCISDGP Trigger: TGGCCCATCAGATATACAGGATGATGTGTTCAAAGGGCTACTCAAAGAAAGACTTCTCATCTGTGTTCCAGTATCTACGGGAGGAGGAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS CAA 72 bp | TCAGCGGTTCCAATCATACTTATAGCCAACAGCATGTaGTTGCAGATCTTTGCAGACTGCCCCGTTCCAACA | + |
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Preference number: 6 (lower is better) Translates to: SAVPIILIANSM*LQIFADCPVPT Trigger: TGTTGGAACGGGGCAGTCTGCAAAGATCTGCAACAACATGCTGTTGGCTATAAGTATGATTGGAACCGCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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| CDS CAA 72 bp | CCCGTAGATACTGGAACACAGATGAGAAGTCTTTCTTaGAGTAGCCCTTTGAACACATCATCCTGTATATCT | + |
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Preference number: 6 (lower is better) Translates to: PVDTGTQMRSLS*SSPLNTSSCIS Trigger: AGATATACAGGATGATGTGTTCAAAGGGCTACTCAAAGAAAGACTTCTCATCTGTGTTCCAGTATCTACGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031788.9 |
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