RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HHIP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000064325

Ensembl transcript IDs: ENSMUST00000079038.4

Found 225 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCGGTTGCATGTGCTCTTTTGCCTCCAACGTGTCAATCATCCCAGTaGGCTTCCGGTGCTGCCCTTGCAGGTGCCTTCCCCTCTCTACAG +
Preference number: 1 (lower is better)
Translates to: PVACALLPPTCQSSQ*ASGAALAGAFPSLQ
Trigger: CTGTAGAGAGGGGAAGGCACCTGCAAGGGCAGCACCGGAAGCTCACTGGGATGATTGACACGTTGGAGGCAAAAGAGCACATGCAACCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR GCA 90 bp CTTGTAAACTCCTGGAGTCTAAAGCTGAGCCAAGCTGGAGCCGGTTaGATGTGCTCTTTTGCCTCCAACGTGTCAATCATCCCAGTGAGC +
Preference number: 1 (lower is better)
Translates to: LVNSWSLKLSQAGAG*MCSFASNVSIIPVS
Trigger: GCTCACTGGGATGATTGACACGTTGGAGGCAAAAGAGCACATGCAACCGGCTCCAGCTTGGCTCAGCTTTAGACTCCAGGAGTTTACAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 90 bp CAGCCTGGGTTGGCTGTGAAGGAGCAAGCTCTTCTCCAGGGAGGATaGATTAAGAGCACACACTGTAGCCTTTTAATCGCACAGACTCTG +
Preference number: 1 (lower is better)
Translates to: QPGLAVKEQALLQGG*IKSTHCSLLIAQTL
Trigger: CAGAGTCTGTGCGATTAAAAGGCTACAGTGTGTGCTCTTAATCCATCCTCCCTGGAGAAGAGCTTGCTCCTTCACAGCCAACCCAGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 90 bp GGAGGAAGAGGTGCGTGCACTGTCAGCCAGTGCTGCACACTTTTATaGTTCTACAGCTTGGATTCCAGAGGAATGAATGCTATGGTTGAG +
Preference number: 1 (lower is better)
Translates to: GGRGACTVSQCCTLL*FYSLDSRGMNAMVE
Trigger: CTCAACCATAGCATTCATTCCTCTGGAATCCAAGCTGTAGAATCATAAAAGTGTGCAGCACTGGCTGACAGTGCACGCACCTCTTCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 90 bp AGGCTACTGCATGACTCATTGCAAGATTTGTCAGTGTTGGGCCAGTaGAGTGTTGGTAAGACCAGAAGGGACCACCTCTTTTCTAGGGTA +
Preference number: 1 (lower is better)
Translates to: RLLHDSLQDLSVLGQ*SVGKTRRDHLFSRV
Trigger: TACCCTAGAAAAGAGGTGGTCCCTTCTGGTCTTACCAACACTCCACTGGCCCAACACTGACAAATCTTGCAATGAGTCATGCAGTAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 90 bp TACACACAGATGTACTTGAGGCCATCTGTACTACTTGTAAACTCCTaGAGTCTAAAGCTGAGCCAAGCTGGAGCCGGTTGCATGTGCTCT +
Preference number: 1 (lower is better)
Translates to: YTQMYLRPSVLLVNS*SLKLSQAGAGCMCS
Trigger: AGAGCACATGCAACCGGCTCCAGCTTGGCTCAGCTTTAGACTCCAGGAGTTTACAAGTAGTACAGATGGCCTCAAGTACATCTGTGTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 90 bp AGGAAGACAGGTAGAACTTGGCTAAGACCTGTATCTGACAGGCTCTaGGAACGTTTTCCACATGTAAACCCTTCCCTTCCTAGGCTTCCT +
Preference number: 1 (lower is better)
Translates to: RKTGRTWLRPVSDRL*ERFPHVNPSLPRLP
Trigger: AGGAAGCCTAGGAAGGGAAGGGTTTACATGTGGAAAACGTTCTCAGAGCCTGTCAGATACAGGTCTTAGCCAAGTTCTACCTGTCTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 90 bp ACAGATGAAGGCTACTGCATGACTCATTGCAAGATTTGTCAGTGTTaGGCCAGTGGAGTGTTGGTAAGACCAGAAGGGACCACCTCTTTT +
Preference number: 1 (lower is better)
Translates to: TDEGYCMTHCKICQC*ASGVLVRPEGTTSF
Trigger: AAAAGAGGTGGTCCCTTCTGGTCTTACCAACACTCCACTGGCCCAACACTGACAAATCTTGCAATGAGTCATGCAGTAGCCTTCATCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 90 bp ATCTGTACTACTTGTAAACTCCTGGAGTCTAAAGCTGAGCCAAGCTaGAGCCGGTTGCATGTGCTCTTTTGCCTCCAACGTGTCAATCAT +
Preference number: 1 (lower is better)
Translates to: ICTTCKLLESKAEPS*SRLHVLFCLQRVNH
Trigger: ATGATTGACACGTTGGAGGCAAAAGAGCACATGCAACCGGCTCCAGCTTGGCTCAGCTTTAGACTCCAGGAGTTTACAAGTAGTACAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 90 bp TTGTTCCCTACGTACCAAGATTTCCCAACCCATGCCCATTTCATATaGGGTCACTGGAACCCAAGCAATCAAATATGGAAGACAGGAGCA +
Preference number: 1 (lower is better)
Translates to: LFPTYQDFPTHAHFI*GHWNPSNQIWKTGA
Trigger: TGCTCCTGTCTTCCATATTTGATTGCTTGGGTTCCAGTGACCTCATATGAAATGGGCATGGGTTGGGAAATCTTGGTACGTAGGGAACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 90 bp GTCAGAGAGCAAATGCATGTTTCAGTTATGGAAAGAGGAGATTTCTaGTGGGAATTTGTCAGTCCTCCCAGAAACAGGCCACCTGATTCC +
Preference number: 1 (lower is better)
Translates to: VREQMHVSVMERGDF*WEFVSPPRNRPPDS
Trigger: GGAATCAGGTGGCCTGTTTCTGGGAGGACTGACAAATTCCCATCAGAAATCTCCTCTTTCCATAACTGAAACATGCATTTGCTCTCTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 90 bp GAAGTCAGATTTGCCAAGAATGAAGATCATAAGAATCCATACATGTaGCCAGCTTATATACAGCCTGGGTTGGCTGTGAAGGAGCAAGCT +
Preference number: 1 (lower is better)
Translates to: EVRFAKNEDHKNPYM*PAYIQPGLAVKEQA
Trigger: AGCTTGCTCCTTCACAGCCAACCCAGGCTGTATATAAGCTGGTCACATGTATGGATTCTTATGATCTTCATTCTTGGCAAATCTGACTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 90 bp AGATTTCTGATGGGAATTTGTCAGTCCTCCCAGAAACAGGCCACCTaGTTCCTCAGGGAATATAGATGTGTTCATTTTCTGGGCATAGAA +
Preference number: 1 (lower is better)
Translates to: RFLMGICQSSQKQAT*FLREYRCVHFLGIE
Trigger: TTCTATGCCCAGAAAATGAACACATCTATATTCCCTGAGGAATCAGGTGGCCTGTTTCTGGGAGGACTGACAAATTCCCATCAGAAATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR GCA 90 bp CAGAGAAGGGTAGGGTGTGGAGCCTTAGGTAATATTCTAGACAGATaGTCAGACAATAAGCTGATGTACCATTCACAAACCTTGCTGATA +
Preference number: 1 (lower is better)
Translates to: QRRVGCGALGNILDR*SDNKLMYHSQTLLI
Trigger: TATCAGCAAGGTTTGTGAATGGTACATCAGCTTATTGTCTGAGCATCTGTCTAGAATATTACCTAAGGCTCCACACCCTACCCTTCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 90 bp CATGTTGGCACAAGTACACATTGCTACATTAGATCCACAGCACATTaGAGGCTGTTTGCTTCCTTACTCCCCTTCTTTCCAATTAAGTTG +
Preference number: 1 (lower is better)
Translates to: HVGTSTHCYIRSTAH*RLFASLLPFFPIKL
Trigger: CAACTTAATTGGAAAGAAGGGGAGTAAGGAAGCAAACAGCCTTCAATGTGCTGTGGATCTAATGTAGCAATGTGTACTTGTGCCAACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 90 bp TGCACATATGACAGAGAGTCAGAGAGCAAATGCATGTTTCAGTTATaGAAAGAGGAGATTTCTGATGGGAATTTGTCAGTCCTCCCAGAA +
Preference number: 1 (lower is better)
Translates to: CTYDRESESKCMFQL*KEEISDGNLSVLPE
Trigger: TTCTGGGAGGACTGACAAATTCCCATCAGAAATCTCCTCTTTCCATAACTGAAACATGCATTTGCTCTCTGACTCTCTGTCATATGTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 90 bp AGCTGGTTTCATGAGAAGTTCACAGTCTATCAATGTCACCCACACTaGATAAGGGATGATTTGATAGTAAGGCCCACTCACAAAAATGGT +
Preference number: 1 (lower is better)
Translates to: SWFHEKFTVYQCHPH*IRDDLIVRPTHKNG
Trigger: ACCATTTTTGTGAGTGGGCCTTACTATCAAATCATCCCTTATTCAGTGTGGGTGACATTGATAGACTGTGAACTTCTCATGAAACCAGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 90 bp GAAGGCTGTTTGCTTCCTTACTCCCCTTCTTTCCAATTAAGTTGGTaGAAACGTAACTTTAGTATTTTACAGGACAGGGTAAAGGTGTCT +
Preference number: 1 (lower is better)
Translates to: EGCLLPYSPSFQLSW*KRNFSILQDRVKVS
Trigger: AGACACCTTTACCCTGTCCTGTAAAATACTAAAGTTACGTTTTCACCAACTTAATTGGAAAGAAGGGGAGTAAGGAAGCAAACAGCCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR GCA 90 bp TCTGGATCTGGTCATCTTAGCCAAGGTTATTTGCAGAAGAGCGTCTaGCAATGGAGCATCTTCTCTTTTAAAGTTATAAAAAGAAGCTCT +
Preference number: 1 (lower is better)
Translates to: SGSGHLSQGYLQKSV*QWSIFSFKVIKRSS
Trigger: AGAGCTTCTTTTTATAACTTTAAAAGAGAAGATGCTCCATTGGCAGACGCTCTTCTGCAAATAACCTTGGCTAAGATGACCAGATCCAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 90 bp AGAGGGCAATTTGGTCTCCATGCTCATTTAGTCCCAAGACTTCTCTaGATAGACTGTCAATTGAATCTAAATTGTGCAAAATTATGCAAG +
Preference number: 1 (lower is better)
Translates to: RGQFGLHAHLVPRLL*IDCQLNLNCAKLCK
Trigger: CTTGCATAATTTTGCACAATTTAGATTCAATTGACAGTCTATTCAGAGAAGTCTTGGGACTAAATGAGCATGGAGACCAAATTGCCCTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 90 bp CACTGTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGTaGAAGCACTTTACATGCATGAAATGCTGGAATTTTATAAGAACT +
Preference number: 1 (lower is better)
Translates to: HCSLLIAQTLIFLLW*KHFTCMKCWNFIRT
Trigger: AGTTCTTATAAAATTCCAGCATTTCATGCATGTAAAGTGCTTTCACCATAGCAAGAATATCAGAGTCTGTGCGATTAAAAGGCTACAGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 90 bp TCTGGGCTCTTCCTTCTGCCTCTTATTAGTGTATTAACAGAAACCTaGGGATGGATTGTTTCTGAATCTTATAAGATTCTCATAATCTTG +
Preference number: 1 (lower is better)
Translates to: SGLFLLPLISVLTET*GWIVSESYKILIIL
Trigger: CAAGATTATGAGAATCTTATAAGATTCAGAAACAATCCATCCTCAGGTTTCTGTTAATACACTAATAAGAGGCAGAAGGAAGAGCCCAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR GCA 90 bp AACTTGTTCTATGCCATATTAGTAATCAGATATGTGGCTAGTTTGTaGACATATGACAGAGAGTCAGAGAGCAAATGCATGTTTCAGTTA +
Preference number: 1 (lower is better)
Translates to: NLFYAILVIRYVASL*TYDRESESKCMFQL
Trigger: TAACTGAAACATGCATTTGCTCTCTGACTCTCTGTCATATGTGCACAAACTAGCCACATATCTGATTACTAATATGGCATAGAACAAGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 90 bp CTGGCGCAGACCATACCAAGCCTAATCATACCTTATTCATATGAATaGAAACTACTGACTAGTTATTTTTCAGTACAGAAAGAAATGTTC +
Preference number: 1 (lower is better)
Translates to: LAQTIPSLIIPYSYE*KLLTSYFSVQKEMF
Trigger: GAACATTTCTTTCTGTACTGAAAAATAACTAGTCAGTAGTTTCCATTCATATGAATAAGGTATGATTAGGCTTGGTATGGTCTGCGCCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 90 bp ACTTGTAAACTCCTGGAGTCTAAAGCTGAGCCAAGCTGGAGCCGGTaGCATGTGCTCTTTTGCCTCCAACGTGTCAATCATCCCAGTGAG +
Preference number: 2 (lower is better)
Translates to: TCKLLESKAEPSWSR*HVLFCLQRVNHPSE
Trigger: CTCACTGGGATGATTGACACGTTGGAGGCAAAAGAGCACATGCAACCGGCTCCAGCTTGGCTCAGCTTTAGACTCCAGGAGTTTACAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR GCA 90 bp GCAATCAAATATGGAAGACAGGAGCAGTGGACCCAACAAATATTCTACAGTGTGGGAGGAAGAGGTGCGTaGACTGTCAGCCAGTGCTGC +
Preference number: 2 (lower is better)
Translates to: AIKYGRQEQWTQQIFYSVGGRGA*TVSQCC
Trigger: GCAGCACTGGCTGACAGTGCACGCACCTCTTCCTCC...CACACTGTAGAATATTTGTTGGGTCCACTGCTCCTGTCTTCCATATTTGATTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CCA 90 bp CAGTGGAGTGTTGGTAAGACCAGAAGGGACCACCTCTTTTCTAGGGTAAGAGGGCTTCTCCAGGGAGGATaGATTAAGAGCACACACTGT +
Preference number: 2 (lower is better)
Translates to: QWSVGKTRRDHLFSRVRGLLQGG*IKSTHC
Trigger: ACAGTGTGTGCTCTTAATCCATCCTCCCTGGAGAAG...CCCTCTTACCCTAGAAAAGAGGTGGTCCCTTCTGGTCTTACCAACACTCCACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR TCA 90 bp GCAATCAAATATGGAAGACAGGAGCAGTGGACCCAACAAATATTCTACAGTGTGGGAGACCACTGTTGTTaGGCCATATTCCTGAGGAGG +
Preference number: 2 (lower is better)
Translates to: AIKYGRQEQWTQQIFYSVGDHCC*AIFLRR
Trigger: CCTCCTCAGGAATATGGCTCAACAACAGTGGTCTCC...CACACTGTAGAATATTTGTTGGGTCCACTGCTCCTGTCTTCCATATTTGATTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR TCA 90 bp CAGTGGAGTGTTGGTAAGACCAGAAGGGACCACCTCTTTTCTAGGGTAAGAGGGGTCCCAAGACTTCTCTaGATAGACTGTCAATTGAAT +
Preference number: 2 (lower is better)
Translates to: QWSVGKTRRDHLFSRVRGVPRLL*IDCQLN
Trigger: ATTCAATTGACAGTCTATTCAGAGAAGTCTTGGGAC...CCCTCTTACCCTAGAAAAGAGGTGGTCCCTTCTGGTCTTACCAACACTCCACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR TCA 90 bp TCATTTTCTGGGCATAGAACTTTGGTTGTGTTCTCTGAAAGTACAGACCACATAGTTGAGCCATATTCCTaGGGAGGAAGAGGTGCGTGC +
Preference number: 2 (lower is better)
Translates to: SFSGHRTLVVFSESTDHIVEPYS*GGRGAC
Trigger: GCACGCACCTCTTCCTCCTCAGGAATATGGCTCAAC...TATGTGGTCTGTACTTTCAGAGAACACAACCAAAGTTCTATGCCCAGAAAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR GCA 90 bp CCTAACTTGTTCTATGCCATATTAGTAATCAGATATGTGGCTAGTTTGTGCACACTGAGGAGGAAGAGGTaGGTGCACTGTCAGCCAGTG +
Preference number: 2 (lower is better)
Translates to: PNLFYAILVIRYVASLCTLRRKR*VHCQPV
Trigger: CACTGGCTGACAGTGCACGCACCTCTTCCTCCTCAG...TGTGCACAAACTAGCCACATATCTGATTACTAATATGGCATAGAACAAGTTAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 90 bp GTCAAGCTCTCTACTAGGGCAACTGTCCTAATCTTTCCTGTAACTTaGCTGGAAGACCAGAATGAAGCACCTATGCTAGCAGATGTGTAT +
Preference number: 2 (lower is better)
Translates to: VKLSTRATVLIFPVT*LEDQNEAPMLADVY
Trigger: ATACACATCTGCTAGCATAGGTGCTTCATTCTGGTCTTCCAGCAAAGTTACAGGAAAGATTAGGACAGTTGCCCTAGTAGAGAGCTTGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CCA 90 bp AACAGAGAAAATGTGTCTGAGGCCACCATTACCAAGGGACTAATTTTCTTCCAAACACAGGTAGGAAGGTaGTTTCTACTCAGCTGGTAC +
Preference number: 2 (lower is better)
Translates to: NRENVSEATITKGLIFFQTQVGR*FLLSWY
Trigger: GTACCAGCTGAGTAGAAACCACCTTCCTACCTGTGT...TTGGAAGAAAATTAGTCCCTTGGTAATGGTGGCCTCAGACACATTTTCTCTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 90 bp ACTGGCTGCTTTCTTGCTTTTTCATCTGATGGGAGTGACTACATGTaGGCACAAGTACACATTGCTACATTAGATCCACAGCACATTGAA +
Preference number: 2 (lower is better)
Translates to: TGCFLAFSSDGSDYM*AQVHIATLDPQHIE
Trigger: TTCAATGTGCTGTGGATCTAATGTAGCAATGTGTACTTGTGCCAACATGTAGTCACTCCCATCAGATGAAAAAGCAAGAAAGCAGCCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR TCA 90 bp AAGAGCACACACTGTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGGTGTGTATGCAGATGTaGAGAAATGTGCCAACATAC +
Preference number: 2 (lower is better)
Translates to: KSTHCSLLIAQTLIFLLWVCMQM*RNVPTY
Trigger: GTATGTTGGCACATTTCTTCACATCTGCATACACAC...CCATAGCAAGAATATCAGAGTCTGTGCGATTAAAAGGCTACAGTGTGTGCTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR GCA 90 bp CTTCTCCAGGGAGGATGGATTAAGAGCACACACTGTAGCCTTTTAATCGCACAGAGGAGTTTGGAAACATaGTCTCTTATTATAGACCTT +
Preference number: 2 (lower is better)
Translates to: LLQGGWIKSTHCSLLIAQRSLET*SLIIDL
Trigger: AAGGTCTATAATAAGAGAGCATGTTTCCAAACTCCT...CTGTGCGATTAAAAGGCTACAGTGTGTGCTCTTAATCCATCCTCCCTGGAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CCA 90 bp AACAGAGAAAATGTGTCTGAGGCCACCATTACCAAGGGACTAATTTTCTTCCAAGGAAGACAGGAGCAGTaGACCCAACAAATATTCTAC +
Preference number: 2 (lower is better)
Translates to: NRENVSEATITKGLIFFQGRQEQ*TQQIFY
Trigger: GTAGAATATTTGTTGGGTCCACTGCTCCTGTCTTCC...TTGGAAGAAAATTAGTCCCTTGGTAATGGTGGCCTCAGACACATTTTCTCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR GCA 90 bp TCATCTGATGGGAGTGACTACATGTTGGCACAAGTACACATTGCTACATTAGATACATTGAAGGCTGTTTaGTTCCTTACTCCCCTTCTT +
Preference number: 2 (lower is better)
Translates to: SSDGSDYMLAQVHIATLDTLKAV*FLTPLL
Trigger: AAGAAGGGGAGTAAGGAAGCAAACAGCCTTCAATGT...ATCTAATGTAGCAATGTGTACTTGTGCCAACATGTAGTCACTCCCATCAGATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CCA 90 bp CCTAACTTGTTCTATGCCATATTAGTAATCAGATATGTGGCTAGTTTGTGCACAAGCTTATATACAGCCTaGGTTGGCTGTGAAGGAGCA +
Preference number: 2 (lower is better)
Translates to: PNLFYAILVIRYVASLCTSLYTA*VGCEGA
Trigger: TGCTCCTTCACAGCCAACCCAGGCTGTATATAAGCT...TGTGCACAAACTAGCCACATATCTGATTACTAATATGGCATAGAACAAGTTAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CCA 90 bp AGATGCTCAGACAATAAGCTGATGTACCATTCACAAACCTTGCTGATATACTTCCCAAGCAATCAAATATaGAAGACAGGAGCAGTGGAC +
Preference number: 2 (lower is better)
Translates to: RCSDNKLMYHSQTLLIYFPSNQI*KTGAVD
Trigger: GTCCACTGCTCCTGTCTTCCATATTTGATTGCTTGG...GAAGTATATCAGCAAGGTTTGTGAATGGTACATCAGCTTATTGTCTGAGCATCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR TCA 90 bp CCTAACTTGTTCTATGCCATATTAGTAATCAGATATGTGGCTAGTTTGTGCACATGGATTCCAGAGGAATaGATGCTATGGTTGAGAGTG +
Preference number: 2 (lower is better)
Translates to: PNLFYAILVIRYVASLCTWIPEE*MLWLRV
Trigger: CACTCTCAACCATAGCATTCATTCCTCTGGAATCCA...TGTGCACAAACTAGCCACATATCTGATTACTAATATGGCATAGAACAAGTTAGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR GCA 90 bp AGATTACAATCTTACATCAAGCTGCTTGTTCAGAAATTCACCAAGGAGTTTGGAGGTTGTGCGTGTGTATaGAGATGTGAAGAAATGTGC +
Preference number: 2 (lower is better)
Translates to: RLQSYIKLLVQKFTKEFGGCACV*RCEEMC
Trigger: GCACATTTCTTCACATCTGCATACACACGCACAACC...TCCAAACTCCTTGGTGAATTTCTGAACAAGCAGCTTGATGTAAGATTGTAATCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR GCA 90 bp AACAGAGAAAATGTGTCTGAGGCCACCATTACCAAGGGACTAATTTTCTTCCAAGATCATTGCTTTATGTaGTTTGAAACAGGCCAGAAC +
Preference number: 2 (lower is better)
Translates to: NRENVSEATITKGLIFFQDHCFM*FETGQN
Trigger: GTTCTGGCCTGTTTCAAAGCACATAAAGCAATGATC...TTGGAAGAAAATTAGTCCCTTGGTAATGGTGGCCTCAGACACATTTTCTCTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 90 bp CCTAACTTGTTCTATGCCATATTAGTAATCAGATATGTGGCTAGTTaGTGCACATATGACAGAGAGTCAGAGAGCAAATGCATGTTTCAG +
Preference number: 2 (lower is better)
Translates to: PNLFYAILVIRYVAS*CTYDRESESKCMFQ
Trigger: CTGAAACATGCATTTGCTCTCTGACTCTCTGTCATATGTGCACAAACTAGCCACATATCTGATTACTAATATGGCATAGAACAAGTTAGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CCA 90 bp GCAATCAAATATGGAAGACAGGAGCAGTGGACCCAACAAATATTCTACAGTGTGATTCACCAAGGAGTTTaGAAACATGCTCTCTTATTA +
Preference number: 2 (lower is better)
Translates to: AIKYGRQEQWTQQIFYSVIHQGV*KHALLL
Trigger: TAATAAGAGAGCATGTTTCCAAACTCCTTGGTGAAT...CACACTGTAGAATATTTGTTGGGTCCACTGCTCCTGTCTTCCATATTTGATTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR TCA 90 bp CACAAAATATACAATAGAAGCAGCACATTCATGAAGACTGCTCTTTCAAATAGGTGCCAACATACATGCTaGGAGCTGTACATTTCTGAT +
Preference number: 2 (lower is better)
Translates to: HKIYNRSSTFMKTALSNRCQHTC*ELYISD
Trigger: ATCAGAAATGTACAGCTCTCAGCATGTATGTTGGCA...CCTATTTGAAAGAGCAGTCTTCATGAATGTGCTGCTTCTATTGTATATTTTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR TCA 90 bp CCTAACTTGTTCTATGCCATATTAGTAATCAGATATGTGGCTAGTTTGTGCACAGTAGAAACTTCTGAGTaGAGCTTAGGAAGTGTTTTC +
Preference number: 2 (lower is better)
Translates to: PNLFYAILVIRYVASLCTVETSE*SLGSVF
Trigger: GAAAACACTTCCTAAGCTTCACTCAGAAGTTTCTAC...TGTGCACAAACTAGCCACATATCTGATTACTAATATGGCATAGAACAAGTTAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR GCA 90 bp AACAGAGAAAATGTGTCTGAGGCCACCATTACCAAGGGACTAATTTTCTTCCAAAATCTTACATCAAGCTaGTTGTTCAGAAATTCACCA +
Preference number: 2 (lower is better)
Translates to: NRENVSEATITKGLIFFQNLTSS*LFRNSP
Trigger: TGGTGAATTTCTGAACAAGCAGCTTGATGTAAGATT...TTGGAAGAAAATTAGTCCCTTGGTAATGGTGGCCTCAGACACATTTTCTCTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR GCA 90 bp CCTAACTTGTTCTATGCCATATTAGTAATCAGATATGTGGCTAGTTTGTGCACATACTGCATGACTCATTaGAAGATTTGTCAGTGTTGG +
Preference number: 2 (lower is better)
Translates to: PNLFYAILVIRYVASLCTYCMTH*KICQCW
Trigger: CCAACACTGACAAATCTTGCAATGAGTCATGCAGTA...TGTGCACAAACTAGCCACATATCTGATTACTAATATGGCATAGAACAAGTTAGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CCA 90 bp AGATGCTCAGACAATAAGCTGATGTACCATTCACAAACCTTGCTGATATACTTCTGCCAATTTAGCTCTTaGATCATTGCTTTATGTGCT +
Preference number: 2 (lower is better)
Translates to: RCSDNKLMYHSQTLLIYFCQFSS*IIALCA
Trigger: AGCACATAAAGCAATGATCCAAGAGCTAAATTGGCA...GAAGTATATCAGCAAGGTTTGTGAATGGTACATCAGCTTATTGTCTGAGCATCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 90 bp GAAATTTGGAATTGGTCACATAGTCACACCATCATCTACCAGTTATaGCTATCTACTTTTCTCCTAAGGATGGAAAGAAAGGATTCTAGT +
Preference number: 2 (lower is better)
Translates to: EIWNWSHSHTIIYQL*LSTFLLRMERKDSS
Trigger: ACTAGAATCCTTTCTTTCCATCCTTAGGAGAAAAGTAGATAGCAATAACTGGTAGATGATGGTGTGACTATGTGACCAATTCCAAATTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR GCA 90 bp AGATGCTCAGACAATAAGCTGATGTACCATTCACAAACCTTGCTGATATACTTCTCTAGTGATTTTCTTTaGTTGGGTTACATATCCATG +
Preference number: 2 (lower is better)
Translates to: RCSDNKLMYHSQTLLIYFSSDFL*LGYISM
Trigger: CATGGATATGTAACCCAAGCAAAGAAAATCACTAGA...GAAGTATATCAGCAAGGTTTGTGAATGGTACATCAGCTTATTGTCTGAGCATCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CCA 90 bp CCTAACTTGTTCTATGCCATATTAGTAATCAGATATGTGGCTAGTTTGTGCACAAAAATAAATGCCCACTaGAAAGATAGACTCGAACTG +
Preference number: 2 (lower is better)
Translates to: PNLFYAILVIRYVASLCTKINAH*KDRLEL
Trigger: CAGTTCGAGTCTATCTTTCCAGTGGGCATTTATTTT...TGTGCACAAACTAGCCACATATCTGATTACTAATATGGCATAGAACAAGTTAGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CCA 90 bp CCTAACTTGTTCTATGCCATATTAGTAATCAGATATGTGGCTAGTTTGTGCACAGGTCAAAGAGAAATTTaGAATTGGTCACATAGTCAC +
Preference number: 2 (lower is better)
Translates to: PNLFYAILVIRYVASLCTGQREI*NWSHSH
Trigger: GTGACTATGTGACCAATTCCAAATTTCTCTTTGACC...TGTGCACAAACTAGCCACATATCTGATTACTAATATGGCATAGAACAAGTTAGG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CCA 90 bp CCTAACTTGTTCTATGCCATATTAGTAATCAGATATGTGGCTAGTTTGTGCACATGGAGAGATGGCAAATaGAAAACCATCAAGAAAAAT +
Preference number: 2 (lower is better)
Translates to: PNLFYAILVIRYVASLCTWRDGK*KTIKKN
Trigger: ATTTTTCTTGATGGTTTTCCATTTGCCATCTCTCCA...TGTGCACAAACTAGCCACATATCTGATTACTAATATGGCATAGAACAAGTTAGG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR GCA 72 bp GCCTCCAACGTGTCAATCATCCCAGTGAGCTTCCGGTaGTGCCCTTGCAGGTGCCTTCCCCTCTCTACAGCG +
Preference number: 3 (lower is better)
Translates to: ASNVSIIPVSFR*CPCRCLPLSTA
Trigger: CGCTGTAGAGAGGGGAAGGCACCTGCAAGGGCAGCACCGGAAGCTCACTGGGATGATTGACACGTTGGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 72 bp CCTAGCTGGGAGACCACTGTTGTTGAGCCATATTCCTaGGGAGGAAGAGGTGCGTGCACTGTCAGCCAGTGC +
Preference number: 3 (lower is better)
Translates to: PSWETTVVEPYS*GGRGACTVSQC
Trigger: GCACTGGCTGACAGTGCACGCACCTCTTCCTCCTCAGGAATATGGCTCAACAACAGTGGTCTCCCAGCTAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 72 bp TGCTGCCCTTGCAGGTGCCTTCCCCTCTCTACAGCGTaGAGTCATGCGAGGCACTTCAGCATTTATATTGCG +
Preference number: 3 (lower is better)
Translates to: CCPCRCLPLSTA*SHARHFSIYIA
Trigger: CGCAATATAAATGCTGAAGTGCCTCGCATGACTTCACGCTGTAGAGAGGGGAAGGCACCTGCAAGGGCAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 72 bp ACTTGTAAACTCCTGGAGTCTAAAGCTGAGCCAAGCTaGAGCCGGTTGCATGTGCTCTTTTGCCTCCAACGT +
Preference number: 3 (lower is better)
Translates to: TCKLLESKAEPS*SRLHVLFCLQR
Trigger: ACGTTGGAGGCAAAAGAGCACATGCAACCGGCTCCAGCTTGGCTCAGCTTTAGACTCCAGGAGTTTACAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 72 bp ACAGGCCAGAACTTTGCACCAACACAGGTAGGAAGGTaGTTTCTACTCAGCTGGTACCCAAAGCCTAAAGTC +
Preference number: 3 (lower is better)
Translates to: TGQNFAPTQVGR*FLLSWYPKPKV
Trigger: GACTTTAGGCTTTGGGTACCAGCTGAGTAGAAACCACCTTCCTACCTGTGTTGGTGCAAAGTTCTGGCCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 72 bp ATGTACTTGAGGCCATCTGTACTACTTGTAAACTCCTaGAGTCTAAAGCTGAGCCAAGCTGGAGCCGGTTGC +
Preference number: 3 (lower is better)
Translates to: MYLRPSVLLVNS*SLKLSQAGAGC
Trigger: GCAACCGGCTCCAGCTTGGCTCAGCTTTAGACTCCAGGAGTTTACAAGTAGTACAGATGGCCTCAAGTACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 72 bp GGTGCGTGCACTGTCAGCCAGTGCTGCACACTTTTATaGTTCTACAGCTTGGATTCCAGAGGAATGAATGCT +
Preference number: 3 (lower is better)
Translates to: GACTVSQCCTLL*FYSLDSRGMNA
Trigger: AGCATTCATTCCTCTGGAATCCAAGCTGTAGAATCATAAAAGTGTGCAGCACTGGCTGACAGTGCACGCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 72 bp TTGGCTGTGAAGGAGCAAGCTCTTCTCCAGGGAGGATaGATTAAGAGCACACACTGTAGCCTTTTAATCGCA +
Preference number: 3 (lower is better)
Translates to: LAVKEQALLQGG*IKSTHCSLLIA
Trigger: TGCGATTAAAAGGCTACAGTGTGTGCTCTTAATCCATCCTCCCTGGAGAAGAGCTTGCTCCTTCACAGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 72 bp CATGACTCATTGCAAGATTTGTCAGTGTTGGGCCAGTaGAGTGTTGGTAAGACCAGAAGGGACCACCTCTTT +
Preference number: 3 (lower is better)
Translates to: HDSLQDLSVLGQ*SVGKTRRDHLF
Trigger: AAAGAGGTGGTCCCTTCTGGTCTTACCAACACTCCACTGGCCCAACACTGACAAATCTTGCAATGAGTCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CAA 90 bp TACATGTTGGCACAAGTACACATTGCTACATTAGATCCACAGCACATTGAAGGCACCTCGAGTTTGGGGTaGTGCGTGTGTATGCAGATG +
Preference number: 3 (lower is better)
Translates to: YMLAQVHIATLDPQHIEGTSSLG*CVCMQM
Trigger: CATCTGCATACACACGCACAACCCCAAACTCGAGGT...GCCTTCAATGTGCTGTGGATCTAATGTAGCAATGTGTACTTGTGCCAACATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CAA 90 bp CTTCTCCAGGGAGGATGGATTAAGAGCACACACTGTAGCCTTTTAATCGCACAGGAACTGGCTGCTTTCTaGCTTTTTCATCTGATGGGA +
Preference number: 3 (lower is better)
Translates to: LLQGGWIKSTHCSLLIAQELAAF*LFHLMG
Trigger: TCCCATCAGATGAAAAAGCAAGAAAGCAGCCAGTTC...CTGTGCGATTAAAAGGCTACAGTGTGTGCTCTTAATCCATCCTCCCTGGAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CAA 90 bp GCAATCAAATATGGAAGACAGGAGCAGTGGACCCAACAAATATTCTACAGTGTGGCTGGGAGACCACTGTaGTTGAGCCATATTCCTGAG +
Preference number: 3 (lower is better)
Translates to: AIKYGRQEQWTQQIFYSVAGRPL*LSHIPE
Trigger: CTCAGGAATATGGCTCAACAACAGTGGTCTCCCAGC...CACACTGTAGAATATTTGTTGGGTCCACTGCTCCTGTCTTCCATATTTGATTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 72 bp GCCAATTTAGCTCTTGGATCATTGCTTTATGTGCTTTaGAACAGGCCAGAACTTTGCACCAACACAGGTAGG +
Preference number: 3 (lower is better)
Translates to: ANLALGSLLYVL*NRPELCTNTGR
Trigger: CCTACCTGTGTTGGTGCAAAGTTCTGGCCTGTTTCAAAGCACATAAAGCAATGATCCAAGAGCTAAATTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 72 bp ATGGGAATTTGTCAGTCCTCCCAGAAACAGGCCACCTaGTTCCTCAGGGAATATAGATGTGTTCATTTTCTG +
Preference number: 3 (lower is better)
Translates to: MGICQSSQKQAT*FLREYRCVHFL
Trigger: CAGAAAATGAACACATCTATATTCCCTGAGGAATCAGGTGGCCTGTTTCTGGGAGGACTGACAAATTCCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 72 bp ACAAGTACACATTGCTACATTAGATCCACAGCACATTaGAGGCTGTTTGCTTCCTTACTCCCCTTCTTTCCA +
Preference number: 3 (lower is better)
Translates to: TSTHCYIRSTAH*RLFASLLPFFP
Trigger: TGGAAAGAAGGGGAGTAAGGAAGCAAACAGCCTTCAATGTGCTGTGGATCTAATGTAGCAATGTGTACTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 72 bp CAAAAGACTATTAACCTACAGATGAAGGCTACTGCATaGCTCATTGCAAGATTTGTCAGTGTTGGGCCAGTG +
Preference number: 3 (lower is better)
Translates to: QKTINLQMKATA*LIARFVSVGPV
Trigger: CACTGGCCCAACACTGACAAATCTTGCAATGAGTCATGCAGTAGCCTTCATCTGTAGGTTAATAGTCTTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CAA 90 bp GCAATCAAATATGGAAGACAGGAGCAGTGGACCCAACAAATATTCTACAGTGTGAAGAACCAAAGGGTATaGTCACAGAGACCTAAAGGA +
Preference number: 3 (lower is better)
Translates to: AIKYGRQEQWTQQIFYSVKNQRV*SQRPKG
Trigger: TCCTTTAGGTCTCTGTGACAATACCCTTTGGTTCTT...CACACTGTAGAATATTTGTTGGGTCCACTGCTCCTGTCTTCCATATTTGATTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 72 bp TTTGCCAAGAATGAAGATCATAAGAATCCATACATGTaGCCAGCTTATATACAGCCTGGGTTGGCTGTGAAG +
Preference number: 3 (lower is better)
Translates to: FAKNEDHKNPYM*PAYIQPGLAVK
Trigger: CTTCACAGCCAACCCAGGCTGTATATAAGCTGGTCACATGTATGGATTCTTATGATCTTCATTCTTGGCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 72 bp CACAGTCTATCAATGTCACCCACACTGAATAAGGGATaGTTTGATAGTAAGGCCCACTCACAAAAATGGTTG +
Preference number: 3 (lower is better)
Translates to: HSLSMSPTLNKG*FDSKAHSQKWL
Trigger: CAACCATTTTTGTGAGTGGGCCTTACTATCAAATCATCCCTTATTCAGTGTGGGTGACATTGATAGACTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 72 bp ACGTGCCAAGAGACAACAGAGAAACACATAAGATCTTaGATTAGCGTGTACTTTGAAAGACCTCAGGTTCAG +
Preference number: 3 (lower is better)
Translates to: TCQETTEKHIRS*ISVYFERPQVQ
Trigger: CTGAACCTGAGGTCTTTCAAAGTACACGCTAATTCAAGATCTTATGTGTTTCTCTGTTGTCTCTTGGCACGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 72 bp GACAGAGAGTCAGAGAGCAAATGCATGTTTCAGTTATaGAAAGAGGAGATTTCTGATGGGAATTTGTCAGTC +
Preference number: 3 (lower is better)
Translates to: DRESESKCMFQL*KEEISDGNLSV
Trigger: GACTGACAAATTCCCATCAGAAATCTCCTCTTTCCATAACTGAAACATGCATTTGCTCTCTGACTCTCTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 72 bp TGCAAGGAATCTATTACTTGCTTGCATCTTTCCAACTaGCTGGTACATGCCCTAATACATTCTATGGCAAAG +
Preference number: 3 (lower is better)
Translates to: CKESITCLHLSN*LVHALIHSMAK
Trigger: CTTTGCCATAGAATGTATTAGGGCATGTACCAGCCAGTTGGAAAGATGCAAGCAAGTAATAGATTCCTTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 72 bp CACTTTTATGATTCTACAGCTTGGATTCCAGAGGAATaGATGCTATGGTTGAGAGTGTGCACTTATCATGGT +
Preference number: 3 (lower is better)
Translates to: HFYDSTAWIPEE*MLWLRVCTYHG
Trigger: ACCATGATAAGTGCACACTCTCAACCATAGCATTCATTCCTCTGGAATCCAAGCTGTAGAATCATAAAAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR GCA 72 bp GTGCAAACTCAAGAAGGTCCTGTGAGCCAGTACCTATaGATATTAATTTCTGGAGACAGTCTAGAAATTGTA +
Preference number: 3 (lower is better)
Translates to: VQTQEGPVSQYL*ILISGDSLEIV
Trigger: TACAATTTCTAGACTGTCTCCAGAAATTAATATGCATAGGTACTGGCTCACAGGACCTTCTTGAGTTTGCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 72 bp AGGTCCTGTGAGCCAGTACCTATGCATATTAATTTCTaGAGACAGTCTAGAAATTGTAACAGTTCCTATGCT +
Preference number: 3 (lower is better)
Translates to: RSCEPVPMHINF*RQSRNCNSSYA
Trigger: AGCATAGGAACTGTTACAATTTCTAGACTGTCTCCAGAAATTAATATGCATAGGTACTGGCTCACAGGACCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR GCA 72 bp TATGCCATATTAGTAATCAGATATGTGGCTAGTTTGTaGACATATGACAGAGAGTCAGAGAGCAAATGCATG +
Preference number: 3 (lower is better)
Translates to: YAILVIRYVASL*TYDRESESKCM
Trigger: CATGCATTTGCTCTCTGACTCTCTGTCATATGTGCACAAACTAGCCACATATCTGATTACTAATATGGCATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR-3UTR CAA 90 bp AGATGCTCAGACAATAAGCTGATGTACCATTCACAAACCTTGCTGATATACTTCCTTGTAGAAAATTTATaGAGGCAAGAACCAAAGGGT +
Preference number: 3 (lower is better)
Translates to: RCSDNKLMYHSQTLLIYFLVENL*RQEPKG
Trigger: ACCCTTTGGTTCTTGCCTCAATAAATTTTCTACAAG...GAAGTATATCAGCAAGGTTTGTGAATGGTACATCAGCTTATTGTCTGAGCATCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 72 bp GGATGGAAAGAAAGGATTCTAGTGATTTTCTTTGCTTaGGTTACATATCCATGGGTCACAGTCTTTAAAGAT +
Preference number: 3 (lower is better)
Translates to: GWKERILVIFFA*VTYPWVTVFKD
Trigger: ATCTTTAAAGACTGTGACCCATGGATATGTAACCCAAGCAAAGAAAATCACTAGAATCCTTTCTTTCCATCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 72 bp CTCTTTTACATCTTAATGAGATGCCAATTTAGCTCTTaGATCATTGCTTTATGTGCTTTGAAACAGGCCAGA +
Preference number: 3 (lower is better)
Translates to: LFYILMRCQFSS*IIALCALKQAR
Trigger: TCTGGCCTGTTTCAAAGCACATAAAGCAATGATCCAAGAGCTAAATTGGCATCTCATTAAGATGTAAAAGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 72 bp CTTTTAATCGCACAGACTCTGATATTCTTGCTATGGTaGAAGCACTTTACATGCATGAAATGCTGGAATTTT +
Preference number: 3 (lower is better)
Translates to: LLIAQTLIFLLW*KHFTCMKCWNF
Trigger: AAAATTCCAGCATTTCATGCATGTAAAGTGCTTTCACCATAGCAAGAATATCAGAGTCTGTGCGATTAAAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 72 bp TTTGGTCTCCATGCTCATTTAGTCCCAAGACTTCTCTaGATAGACTGTCAATTGAATCTAAATTGTGCAAAA +
Preference number: 3 (lower is better)
Translates to: FGLHAHLVPRLL*IDCQLNLNCAK
Trigger: TTTTGCACAATTTAGATTCAATTGACAGTCTATTCAGAGAAGTCTTGGGACTAAATGAGCATGGAGACCAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CCA 72 bp TGTCATTTCTTTAAGAGTTACTCTAGGAGTGCAGCCTaGAAAGCTATTTCTCTACTTTTCTTAGTGATACTA +
Preference number: 3 (lower is better)
Translates to: CHFFKSYSRSAA*KAISLLFLVIL
Trigger: TAGTATCACTAAGAAAAGTAGAGAAATAGCTTTCCAGGCTGCACTCCTAGAGTAACTCTTAAAGAAATGACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR TCA 72 bp AACCATCAAGAAAAATGTCTGTCAGACTCTTGCAATTaGAAGCTAGGGCACATCATTTCTTTAAGAAAATCT +
Preference number: 3 (lower is better)
Translates to: NHQEKCLSDSCN*KLGHIISLRKS
Trigger: AGATTTTCTTAAAGAAATGATGTGCCCTAGCTTTCAATTGCAAGAGTCTGACAGACATTTTTCTTGATGGTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp CAGTGGAGTGTTGGTAAGACCAGAAGGGACCACCTCTTTTCTAGGGTAAGAGGGCAAGGATACCTGCCCTaGTCACTCTGCGGACGTTCC +
Preference number: 4 (lower is better)
Translates to: QWSVGKTRRDHLFSRVRGQGYLP*SLCGRS
Trigger: GGAACGTCCGCAGAGTGACCAGGGCAGGTATCCTTG...CCCTCTTACCCTAGAAAAGAGGTGGTCCCTTCTGGTCTTACCAACACTCCACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 72 bp GACCATAGAGGGATCCTAGCTGGGAGACCACTGTTGTaGAGCCATATTCCTGAGGAGGAAGAGGTGCGTGCA +
Preference number: 4 (lower is better)
Translates to: DHRGILAGRPLL*SHIPEEEEVRA
Trigger: TGCACGCACCTCTTCCTCCTCAGGAATATGGCTCAACAACAGTGGTCTCCCAGCTAGGATCCCTCTATGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 72 bp CTCCTGGAGTCTAAAGCTGAGCCAAGCTGGAGCCGGTaGCATGTGCTCTTTTGCCTCCAACGTGTCAATCAT +
Preference number: 4 (lower is better)
Translates to: LLESKAEPSWSR*HVLFCLQRVNH
Trigger: ATGATTGACACGTTGGAGGCAAAAGAGCACATGCAACCGGCTCCAGCTTGGCTCAGCTTTAGACTCCAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp TACATGTTGGCACAAGTACACATTGCTACATTAGATCCACAGCACATTGAAGGCGCCGCAGCCCACTCATaGCCTCCTGGACACAGAGGC +
Preference number: 4 (lower is better)
Translates to: YMLAQVHIATLDPQHIEGAAAHS*PPGHRG
Trigger: GCCTCTGTGTCCAGGAGGTCATGAGTGGGCTGCGGC...GCCTTCAATGTGCTGTGGATCTAATGTAGCAATGTGTACTTGTGCCAACATGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp CAGTGGAGTGTTGGTAAGACCAGAAGGGACCACCTCTTTTCTAGGGTAAGAGGGGCAGCAAGATACTCGTaGGTAGAAGCCACCACACAG +
Preference number: 4 (lower is better)
Translates to: QWSVGKTRRDHLFSRVRGAARYS*VEATTQ
Trigger: CTGTGTGGTGGCTTCTACCCACGAGTATCTTGCTGC...CCCTCTTACCCTAGAAAAGAGGTGGTCCCTTCTGGTCTTACCAACACTCCACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp CAGTGGAGTGTTGGTAAGACCAGAAGGGACCACCTCTTTTCTAGGGTAAGAGGGCCAAGATGCTTTCGGTaGAGCTCTGCGACTTCCAGA +
Preference number: 4 (lower is better)
Translates to: QWSVGKTRRDHLFSRVRGPRCFR*SSATSR
Trigger: TCTGGAAGTCGCAGAGCTCCACCGAAAGCATCTTGG...CCCTCTTACCCTAGAAAAGAGGTGGTCCCTTCTGGTCTTACCAACACTCCACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp AAGAGCACACACTGTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGCTCGACAGGAGCTGCTaGCACCCAGGCAGAGCGGCT +
Preference number: 4 (lower is better)
Translates to: KSTHCSLLIAQTLIFLLWLDRSC*HPGRAA
Trigger: AGCCGCTCTGCCTGGGTGCCAGCAGCTCCTGTCGAG...CCATAGCAAGAATATCAGAGTCTGTGCGATTAAAAGGCTACAGTGTGTGCTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp TCATCTGATGGGAGTGACTACATGTTGGCACAAGTACACATTGCTACATTAGATCCTCCCAGCCGGGACTaGAGCAGCACTTGCCAGTGG +
Preference number: 4 (lower is better)
Translates to: SSDGSDYMLAQVHIATLDPPSRD*SSTCQW
Trigger: CCACTGGCAAGTGCTGCTGCAGTCCCGGCTGGGAGG...ATCTAATGTAGCAATGTGTACTTGTGCCAACATGTAGTCACTCCCATCAGATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp AAGAGCACACACTGTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGACACAGACACCTCCATaGCGGCACGCTGGCTCACAC +
Preference number: 4 (lower is better)
Translates to: KSTHCSLLIAQTLIFLLWTQTPP*RHAGSH
Trigger: GTGTGAGCCAGCGTGCCGTCATGGAGGTGTCTGTGT...CCATAGCAAGAATATCAGAGTCTGTGCGATTAAAAGGCTACAGTGTGTGCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp CTTCTCCAGGGAGGATGGATTAAGAGCACACACTGTAGCCTTTTAATCGCACAGCCACTCATGACCTCCTaGACACAGAGGCAGTTGTGT +
Preference number: 4 (lower is better)
Translates to: LLQGGWIKSTHCSLLIAQPLMTS*TQRQLC
Trigger: ACACAACTGCCTCTGTGTCCAGGAGGTCATGAGTGG...CTGTGCGATTAAAAGGCTACAGTGTGTGCTCTTAATCCATCCTCCCTGGAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 72 bp CATTGCAAGATTTGTCAGTGTTGGGCCAGTGGAGTGTaGGTAAGACCAGAAGGGACCACCTCTTTTCTAGGG +
Preference number: 4 (lower is better)
Translates to: HCKICQCWASGV*VRPEGTTSFLG
Trigger: CCCTAGAAAAGAGGTGGTCCCTTCTGGTCTTACCAACACTCCACTGGCCCAACACTGACAAATCTTGCAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 72 bp AGGCTACTGCATGACTCATTGCAAGATTTGTCAGTGTaGGGCCAGTGGAGTGTTGGTAAGACCAGAAGGGAC +
Preference number: 4 (lower is better)
Translates to: RLLHDSLQDLSV*GQWSVGKTRRD
Trigger: GTCCCTTCTGGTCTTACCAACACTCCACTGGCCCAACACTGACAAATCTTGCAATGAGTCATGCAGTAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp TCATCTGATGGGAGTGACTACATGTTGGCACAAGTACACATTGCTACATTAGATGGATCTCTCCTCCACTaGGCAGCTCCAGCTGGGACA +
Preference number: 4 (lower is better)
Translates to: SSDGSDYMLAQVHIATLDGSLLH*AAPAGT
Trigger: TGTCCCAGCTGGAGCTGCTCAGTGGAGGAGAGATCC...ATCTAATGTAGCAATGTGTACTTGTGCCAACATGTAGTCACTCCCATCAGATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp AACAGAGAAAATGTGTCTGAGGCCACCATTACCAAGGGACTAATTTTCTTCCAACGAAGAATGTGGTCGTaGGGCCCAATAGCCCACCGT +
Preference number: 4 (lower is better)
Translates to: NRENVSEATITKGLIFFQRRMWS*GPIAHR
Trigger: ACGGTGGGCTATTGGGCCTCACGACCACATTCTTCG...TTGGAAGAAAATTAGTCCCTTGGTAATGGTGGCCTCAGACACATTTTCTCTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp AAGAGCACACACTGTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGGCTGGTTGGTGCTGTTaGAGTGAGGGTTACTCCGAG +
Preference number: 4 (lower is better)
Translates to: KSTHCSLLIAQTLIFLLWAGWCC*SEGYSE
Trigger: CTCGGAGTAACCCTCACTTCAACAGCACCAACCAGC...CCATAGCAAGAATATCAGAGTCTGTGCGATTAAAAGGCTACAGTGTGTGCTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp AAGAGCACACACTGTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGGGGCAGGTTGAACTGTaGCTCTGCATTCCTCAGGCA +
Preference number: 4 (lower is better)
Translates to: KSTHCSLLIAQTLIFLLWGQVEL*LCIPQA
Trigger: TGCCTGAGGAATGCAGAGTCACAGTTCAACCTGCCC...CCATAGCAAGAATATCAGAGTCTGTGCGATTAAAAGGCTACAGTGTGTGCTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp GCAATCAAATATGGAAGACAGGAGCAGTGGACCCAACAAATATTCTACAGTGTGGGCACTTGTTCGGTCTaGCACAGACACCTCCATGAC +
Preference number: 4 (lower is better)
Translates to: AIKYGRQEQWTQQIFYSVGTCSV*HRHLHD
Trigger: GTCATGGAGGTGTCTGTGTCAGACCGAACAAGTGCC...CACACTGTAGAATATTTGTTGGGTCCACTGCTCCTGTCTTCCATATTTGATTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp GCAATCAAATATGGAAGACAGGAGCAGTGGACCCAACAAATATTCTACAGTGTGCCTCCAGCAGCCTGCTaGATTCTGAGTTGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: AIKYGRQEQWTQQIFYSVPPAAC*ILSCWW
Trigger: CCACCAACAACTCAGAATGCAGCAGGCTGCTGGAGG...CACACTGTAGAATATTTGTTGGGTCCACTGCTCCTGTCTTCCATATTTGATTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp CTTCTCCAGGGAGGATGGATTAAGAGCACACACTGTAGCCTTTTAATCGCACAGGCCCAAGTAGTTAGATaGTGGTCCTCTGACTTGCTT +
Preference number: 4 (lower is better)
Translates to: LLQGGWIKSTHCSLLIAQAQVVR*WSSDLL
Trigger: AAGCAAGTCAGAGGACCAGCATCTAACTACTTGGGC...CTGTGCGATTAAAAGGCTACAGTGTGTGCTCTTAATCCATCCTCCCTGGAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp AGAAATGAAGATTACAATCTTACATCAAGCTGCTTGTTCAGAAATTCACCAAGGAGCCTCGACAGGAGCTaGTGGCACCCAGGCAGAGCG +
Preference number: 4 (lower is better)
Translates to: RNEDYNLTSSCLFRNSPRSLDRS*WHPGRA
Trigger: CGCTCTGCCTGGGTGCCAGCAGCTCCTGTCGAGGCT...CCTTGGTGAATTTCTGAACAAGCAGCTTGATGTAAGATTGTAATCTTCATTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp CAGTGGAGTGTTGGTAAGACCAGAAGGGACCACCTCTTTTCTAGGGTAAGAGGGATACAATGTAACTTGTaGGATCCAGCAAGTAAGACG +
Preference number: 4 (lower is better)
Translates to: QWSVGKTRRDHLFSRVRGIQCNL*DPASKT
Trigger: CGTCTTACTTGCTGGATCTCACAAGTTACATTGTAT...CCCTCTTACCCTAGAAAAGAGGTGGTCCCTTCTGGTCTTACCAACACTCCACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp CACAAAATATACAATAGAAGCAGCACATTCATGAAGACTGCTCTTTCAAATAGGACAGCGCTCACAGGCTaGCGCAGCCCACTCATGACC +
Preference number: 4 (lower is better)
Translates to: HKIYNRSSTFMKTALSNRTALTG*RSPLMT
Trigger: GGTCATGAGTGGGCTGCGGCAGCCTGTGAGCGCTGT...CCTATTTGAAAGAGCAGTCTTCATGAATGTGCTGCTTCTATTGTATATTTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp AACAGAGAAAATGTGTCTGAGGCCACCATTACCAAGGGACTAATTTTCTTCCAACTGATCAAGGATACCTaGCCTGGTCACTCTGCGGAC +
Preference number: 4 (lower is better)
Translates to: NRENVSEATITKGLIFFQLIKDT*PGHSAD
Trigger: GTCCGCAGAGTGACCAGGGCAGGTATCCTTGATCAG...TTGGAAGAAAATTAGTCCCTTGGTAATGGTGGCCTCAGACACATTTTCTCTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 72 bp AACAGCTCTGGATCTGGTCATCTTAGCCAAGGTTATTaGCAGAAGAGCGTCTGCCAATGGAGCATCTTCTCT +
Preference number: 4 (lower is better)
Translates to: NSSGSGHLSQGY*QKSVCQWSIFS
Trigger: AGAGAAGATGCTCCATTGGCAGACGCTCTTCTGCAAATAACCTTGGCTAAGATGACCAGATCCAGAGCTGTT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp AACAGAGAAAATGTGTCTGAGGCCACCATTACCAAGGGACTAATTTTCTTCCAATCTCCTCCAGCAGCCTaGTGCATTCTGAGTTGTTGG +
Preference number: 4 (lower is better)
Translates to: NRENVSEATITKGLIFFQSPPAA*CILSCW
Trigger: CCAACAACTCAGAATGCAGCAGGCTGCTGGAGGAGA...TTGGAAGAAAATTAGTCCCTTGGTAATGGTGGCCTCAGACACATTTTCTCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp AAGAGCACACACTGTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGGGCTTTTCTTGCCATTaGTTGGTCACTGGGCTTTGC +
Preference number: 4 (lower is better)
Translates to: KSTHCSLLIAQTLIFLLWGFSCH*LVTGLC
Trigger: GCAAAGCCCAGTGACCAAGCAATGGCAAGAAAAGCC...CCATAGCAAGAATATCAGAGTCTGTGCGATTAAAAGGCTACAGTGTGTGCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp TCATCTGATGGGAGTGACTACATGTTGGCACAAGTACACATTGCTACATTAGATCACACTTGGCAATTCTaGAGAAGTCTCCCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: SSDGSDYMLAQVHIATLDHTWQF*RSLPPS
Trigger: GCTGGGAGGGAGACTTCTGCAGAATTGCCAAGTGTG...ATCTAATGTAGCAATGTGTACTTGTGCCAACATGTAGTCACTCCCATCAGATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp TCATCTGATGGGAGTGACTACATGTTGGCACAAGTACACATTGCTACATTAGATCAGCCTGCTGCATTCTaGGTTGTTGGTGGCAGAAAA +
Preference number: 4 (lower is better)
Translates to: SSDGSDYMLAQVHIATLDQPAAF*VVGGRK
Trigger: TTTTCTGCCACCAACAACTCAGAATGCAGCAGGCTG...ATCTAATGTAGCAATGTGTACTTGTGCCAACATGTAGTCACTCCCATCAGATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp AACAGAGAAAATGTGTCTGAGGCCACCATTACCAAGGGACTAATTTTCTTCCAACTTCCTTCTCTAGAATaGAGAGCCGATGGGAGCCAT +
Preference number: 4 (lower is better)
Translates to: NRENVSEATITKGLIFFQLPSLE*RADGSH
Trigger: ATGGCTCCCATCGGCTCTTCATTCTAGAGAAGGAAG...TTGGAAGAAAATTAGTCCCTTGGTAATGGTGGCCTCAGACACATTTTCTCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp AAGAGCACACACTGTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGGTCATGTCAATGATCTaGTCAAGGATACCTGCCCTG +
Preference number: 4 (lower is better)
Translates to: KSTHCSLLIAQTLIFLLWVMSMI*SRIPAL
Trigger: CAGGGCAGGTATCCTTGATCAGATCATTGACATGAC...CCATAGCAAGAATATCAGAGTCTGTGCGATTAAAAGGCTACAGTGTGTGCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp TCATTTTCTGGGCATAGAACTTTGGTTGTGTTCTCTGAAAGTACAGACCACATACAGAGCGGCTTTTCTTaGCATTGCTTGGTCACTGGG +
Preference number: 4 (lower is better)
Translates to: SFSGHRTLVVFSESTDHIQSGFS*HCLVTG
Trigger: CCCAGTGACCAAGCAATGGCAAGAAAAGCCGCTCTG...TATGTGGTCTGTACTTTCAGAGAACACAACCAAAGTTCTATGCCCAGAAAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp AAGAGCACACACTGTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGTTTCTTGCCATTGCTTaGTCACTGGGCTTTGCTGGA +
Preference number: 4 (lower is better)
Translates to: KSTHCSLLIAQTLIFLLWFLAIA*SLGFAG
Trigger: TCCAGCAAAGCCCAGTGACCAAGCAATGGCAAGAAA...CCATAGCAAGAATATCAGAGTCTGTGCGATTAAAAGGCTACAGTGTGTGCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp CCTAACTTGTTCTATGCCATATTAGTAATCAGATATGTGGCTAGTTTGTGCACAGCAATCGGAGGTCAGTaGCTGGGCAGGTTGAACTGT +
Preference number: 4 (lower is better)
Translates to: PNLFYAILVIRYVASLCTAIGGQ*LGRLNC
Trigger: ACAGTTCAACCTGCCCAGCCACTGACCTCCGATTGC...TGTGCACAAACTAGCCACATATCTGATTACTAATATGGCATAGAACAAGTTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp AACAGAGAAAATGTGTCTGAGGCCACCATTACCAAGGGACTAATTTTCTTCCAAACGCTGGCTCACACTTaGCAATTCTGCAGAAGTCTC +
Preference number: 4 (lower is better)
Translates to: NRENVSEATITKGLIFFQTLAHT*QFCRSL
Trigger: GAGACTTCTGCAGAATTGCCAAGTGTGAGCCAGCGT...TTGGAAGAAAATTAGTCCCTTGGTAATGGTGGCCTCAGACACATTTTCTCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 72 bp TCTACTAGGGCAACTGTCCTAATCTTTCCTGTAACTTaGCTGGAAGACCAGAATGAAGCACCTATGCTAGCA +
Preference number: 4 (lower is better)
Translates to: STRATVLIFPVT*LEDQNEAPMLA
Trigger: TGCTAGCATAGGTGCTTCATTCTGGTCTTCCAGCAAAGTTACAGGAAAGATTAGGACAGTTGCCCTAGTAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp CCTAACTTGTTCTATGCCATATTAGTAATCAGATATGTGGCTAGTTTGTGCACACCAAGTAAGGCTCCTTaGACAGTTCTCCTTCTGGGG +
Preference number: 4 (lower is better)
Translates to: PNLFYAILVIRYVASLCTPSKAP*TVLLLG
Trigger: CCCCAGAAGGAGAACTGTTCAAGGAGCCTTACTTGG...TGTGCACAAACTAGCCACATATCTGATTACTAATATGGCATAGAACAAGTTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp AGATTACAATCTTACATCAAGCTGCTTGTTCAGAAATTCACCAAGGAGTTTGGAGCTGGTCCTCTGACTTaGTTTCTCGGGAAGTCTGGA +
Preference number: 4 (lower is better)
Translates to: RLQSYIKLLVQKFTKEFGAGPLT*FLGKSG
Trigger: TCCAGACTTCCCGAGAAAGCAAGTCAGAGGACCAGC...TCCAAACTCCTTGGTGAATTTCTGAACAAGCAGCTTGATGTAAGATTGTAATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp CTTCTCCAGGGAGGATGGATTAAGAGCACACACTGTAGCCTTTTAATCGCACAGCATTTTTCTTGTAATTaGGATGGAATGCCAGGCTTA +
Preference number: 4 (lower is better)
Translates to: LLQGGWIKSTHCSLLIAQHFSCN*DGMPGL
Trigger: TAAGCCTGGCATTCCATCCCAATTACAAGAAAAATG...CTGTGCGATTAAAAGGCTACAGTGTGTGCTCTTAATCCATCCTCCCTGGAGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp GCAATCAAATATGGAAGACAGGAGCAGTGGACCCAACAAATATTCTACAGTGTGCTTCCAGAAACACCCTaGCTGTTCTCACATCAACTT +
Preference number: 4 (lower is better)
Translates to: AIKYGRQEQWTQQIFYSVLPETP*LFSHQL
Trigger: AAGTTGATGTGAGAACAGCCAGGGTGTTTCTGGAAG...CACACTGTAGAATATTTGTTGGGTCCACTGCTCCTGTCTTCCATATTTGATTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp GCAATCAAATATGGAAGACAGGAGCAGTGGACCCAACAAATATTCTACAGTGTGGGTTACTCCGAGGTATaGAATAAGGCACATTGCACA +
Preference number: 4 (lower is better)
Translates to: AIKYGRQEQWTQQIFYSVGYSEV*NKAHCT
Trigger: TGTGCAATGTGCCTTATTCCATACCTCGGAGTAACC...CACACTGTAGAATATTTGTTGGGTCCACTGCTCCTGTCTTCCATATTTGATTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp AGATTACAATCTTACATCAAGCTGCTTGTTCAGAAATTCACCAAGGAGTTTGGAGTGGGCAAATACTTCTaGGGGCTGGTTGGTGCTGTT +
Preference number: 4 (lower is better)
Translates to: RLQSYIKLLVQKFTKEFGVGKYF*GLVGAV
Trigger: AACAGCACCAACCAGCCCCCAGAAGTATTTGCCCAC...TCCAAACTCCTTGGTGAATTTCTGAACAAGCAGCTTGATGTAAGATTGTAATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp AACAGAGAAAATGTGTCTGAGGCCACCATTACCAAGGGACTAATTTTCTTCCAATACCATCCCCAAGGATaGTGTACAAAAAGCCATCAG +
Preference number: 4 (lower is better)
Translates to: NRENVSEATITKGLIFFQYHPQG*CTKSHQ
Trigger: CTGATGGCTTTTTGTACATCATCCTTGGGGATGGTA...TTGGAAGAAAATTAGTCCCTTGGTAATGGTGGCCTCAGACACATTTTCTCTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp AGATTACAATCTTACATCAAGCTGCTTGTTCAGAAATTCACCAAGGAGTTTGGATTGGTGCTGTTGAAGTaGGGGTTACTCCGAGGTATG +
Preference number: 4 (lower is better)
Translates to: RLQSYIKLLVQKFTKEFGLVLLK*GLLRGM
Trigger: CATACCTCGGAGTAACCCTCACTTCAACAGCACCAA...TCCAAACTCCTTGGTGAATTTCTGAACAAGCAGCTTGATGTAAGATTGTAATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp TACATGTTGGCACAAGTACACATTGCTACATTAGATCCACAGCACATTGAAGGCAAGACGTCATGTCAATaGTCTGATCAAGGATACCTG +
Preference number: 4 (lower is better)
Translates to: YMLAQVHIATLDPQHIEGKTSCQ*SDQGYL
Trigger: CAGGTATCCTTGATCAGATCATTGACATGACGTCTT...GCCTTCAATGTGCTGTGGATCTAATGTAGCAATGTGTACTTGTGCCAACATGTA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp TCATTTTCTGGGCATAGAACTTTGGTTGTGTTCTCTGAAAGTACAGACCACATACCCACCGTTCCTGGTTaGTGGTATAAGACACATACA +
Preference number: 4 (lower is better)
Translates to: SFSGHRTLVVFSESTDHIPTVPG*WYKTHT
Trigger: TGTATGTGTCTTATACCACCAACCAGGAACGGTGGG...TATGTGGTCTGTACTTTCAGAGAACACAACCAAAGTTCTATGCCCAGAAAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp TCATTTTCTGGGCATAGAACTTTGGTTGTGTTCTCTGAAAGTACAGACCACATAGTCACTGGGCTTTGCTaGAGGGTTAAGAAATTCCCA +
Preference number: 4 (lower is better)
Translates to: SFSGHRTLVVFSESTDHIVTGLC*RVKKFP
Trigger: TGGGAATTTCTTAACCCTCCAGCAAAGCCCAGTGAC...TATGTGGTCTGTACTTTCAGAGAACACAACCAAAGTTCTATGCCCAGAAAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp AACAGAGAAAATGTGTCTGAGGCCACCATTACCAAGGGACTAATTTTCTTCCAATCATCAGCAGTTGTTTaGAGAAGACCTGGAATATGG +
Preference number: 4 (lower is better)
Translates to: NRENVSEATITKGLIFFQSSAVV*RRPGIW
Trigger: CCATATTCCAGGTCTTCTTCAAACAACTGCTGATGA...TTGGAAGAAAATTAGTCCCTTGGTAATGGTGGCCTCAGACACATTTTCTCTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR TCA 90 bp CACAAAATATACAATAGAAGCAGCACATTCATGAAGACTGCTCTTTCAAATAGGTCAGCACAGAGCCTGTaGAGTCACTTAACCCATCCA +
Preference number: 4 (lower is better)
Translates to: HKIYNRSSTFMKTALSNRSAQSL*SHLTHP
Trigger: TGGATGGGTTAAGTGACTTCACAGGCTCTGTGCTGA...CCTATTTGAAAGAGCAGTCTTCATGAATGTGCTGCTTCTATTGTATATTTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp AGATGCTCAGACAATAAGCTGATGTACCATTCACAAACCTTGCTGATATACTTCCTTTGCAGTAGTCTTTaGAGAGGAGTGGAAGTGCTA +
Preference number: 4 (lower is better)
Translates to: RCSDNKLMYHSQTLLIYFLCSSL*RGVEVL
Trigger: TAGCACTTCCACTCCTCTGCAAAGACTACTGCAAAG...GAAGTATATCAGCAAGGTTTGTGAATGGTACATCAGCTTATTGTCTGAGCATCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp TCATTTTCTGGGCATAGAACTTTGGTTGTGTTCTCTGAAAGTACAGACCACATATTGGTCACTGGGCTTTaGTGGAGGGTTAAGAAATTC +
Preference number: 4 (lower is better)
Translates to: SFSGHRTLVVFSESTDHILVTGL*WRVKKF
Trigger: GAATTTCTTAACCCTCCAGCAAAGCCCAGTGACCAA...TATGTGGTCTGTACTTTCAGAGAACACAACCAAAGTTCTATGCCCAGAAAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp AGAAATGAAGATTACAATCTTACATCAAGCTGCTTGTTCAGAAATTCACCAAGGTGGAATAAGGCACATTaGACATGTCGGTGTCCACGT +
Preference number: 4 (lower is better)
Translates to: RNEDYNLTSSCLFRNSPRWNKAH*TCRCPR
Trigger: ACGTGGACACCGACATGTGCAATGTGCCTTATTCCA...CCTTGGTGAATTTCTGAACAAGCAGCTTGATGTAAGATTGTAATCTTCATTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp AGATGCTCAGACAATAAGCTGATGTACCATTCACAAACCTTGCTGATATACTTCGATGGGGGTTTTTCCTaGATACTGTGTATTCCACAA +
Preference number: 4 (lower is better)
Translates to: RCSDNKLMYHSQTLLIYFDGGFS*ILCIPQ
Trigger: TTGTGGAATACACAGTATCCAGGAAAAACCCCCATC...GAAGTATATCAGCAAGGTTTGTGAATGGTACATCAGCTTATTGTCTGAGCATCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp AACAGAGAAAATGTGTCTGAGGCCACCATTACCAAGGGACTAATTTTCTTCCAATTATCTGTAGGATTCTaGCTGATGACCTGTTTTTCC +
Preference number: 4 (lower is better)
Translates to: NRENVSEATITKGLIFFQLSVGF*LMTCFS
Trigger: GGAAAAACAGGTCATCAGCCAGAATCCTACAGATAA...TTGGAAGAAAATTAGTCCCTTGGTAATGGTGGCCTCAGACACATTTTCTCTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp TCATCTGATGGGAGTGACTACATGTTGGCACAAGTACACATTGCTACATTAGATGCATTAAAGGTCTTTTaGGGTCTACGATCTTGTAGA +
Preference number: 4 (lower is better)
Translates to: SSDGSDYMLAQVHIATLDALKVF*GLRSCR
Trigger: TCTACAAGATCGTAGACCCCAAAAGACCTTTAATGC...ATCTAATGTAGCAATGTGTACTTGTGCCAACATGTAGTCACTCCCATCAGATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 72 bp TTTCTTGCTTTTTCATCTGATGGGAGTGACTACATGTaGGCACAAGTACACATTGCTACATTAGATCCACAG +
Preference number: 4 (lower is better)
Translates to: FLAFSSDGSDYM*AQVHIATLDPQ
Trigger: CTGTGGATCTAATGTAGCAATGTGTACTTGTGCCAACATGTAGTCACTCCCATCAGATGAAAAAGCAAGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp AACAGAGAAAATGTGTCTGAGGCCACCATTACCAAGGGACTAATTTTCTTCCAAATTCTGAGTTGTTGGTaGCAGAAAAGATCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: NRENVSEATITKGLIFFQILSCW*QKRSCS
Trigger: AGAACAAGATCTTTTCTGCCACCAACAACTCAGAAT...TTGGAAGAAAATTAGTCCCTTGGTAATGGTGGCCTCAGACACATTTTCTCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp AGAAATGAAGATTACAATCTTACATCAAGCTGCTTGTTCAGAAATTCACCAAGGTGTTTGAAGAAGACCTaGAATATGGCCTCGGCAAGT +
Preference number: 4 (lower is better)
Translates to: RNEDYNLTSSCLFRNSPRCLKKT*NMASAS
Trigger: ACTTGCCGAGGCCATATTCCAGGTCTTCTTCAAACA...CCTTGGTGAATTTCTGAACAAGCAGCTTGATGTAAGATTGTAATCTTCATTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 72 bp TTCTATGCCATATTAGTAATCAGATATGTGGCTAGTTaGTGCACATATGACAGAGAGTCAGAGAGCAAATGC +
Preference number: 4 (lower is better)
Translates to: FYAILVIRYVAS*CTYDRESESKC
Trigger: GCATTTGCTCTCTGACTCTCTGTCATATGTGCACAAACTAGCCACATATCTGATTACTAATATGGCATAGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR GCA 90 bp TCATTTTCTGGGCATAGAACTTTGGTTGTGTTCTCTGAAAGTACAGACCACATAGGGTCATACTCTTACTaGTTGATAGAATGTAAACCT +
Preference number: 4 (lower is better)
Translates to: SFSGHRTLVVFSESTDHIGSYSY*LIECKP
Trigger: AGGTTTACATTCTATCAAGCAGTAAGAGTATGACCC...TATGTGGTCTGTACTTTCAGAGAACACAACCAAAGTTCTATGCCCAGAAAATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CCA 90 bp AACAGAGAAAATGTGTCTGAGGCCACCATTACCAAGGGACTAATTTTCTTCCAAGAATTCAAGAAGAGATaGCTCACTTTCATAATCTCT +
Preference number: 4 (lower is better)
Translates to: NRENVSEATITKGLIFFQEFKKR*LTFIIS
Trigger: AGAGATTATGAAAGTGAGCCATCTCTTCTTGAATTC...TTGGAAGAAAATTAGTCCCTTGGTAATGGTGGCCTCAGACACATTTTCTCTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 72 bp AATTGGTCACATAGTCACACCATCATCTACCAGTTATaGCTATCTACTTTTCTCCTAAGGATGGAAAGAAAG +
Preference number: 4 (lower is better)
Translates to: NWSHSHTIIYQL*LSTFLLRMERK
Trigger: CTTTCTTTCCATCCTTAGGAGAAAAGTAGATAGCAATAACTGGTAGATGATGGTGTGACTATGTGACCAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 72 bp AACAGAAATGAAGATTACAATCTTACATCAAGCTGCTaGTTCAGAAATTCACCAAGGAGTTTGGAAACATGC +
Preference number: 4 (lower is better)
Translates to: NRNEDYNLTSSC*FRNSPRSLETC
Trigger: GCATGTTTCCAAACTCCTTGGTGAATTTCTGAACAAGCAGCTTGATGTAAGATTGTAATCTTCATTTCTGTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
3UTR CAA 72 bp AAACCATCAAGAAAAATGTCTGTCAGACTCTTGCAATaGAAAGCTAGGGCACATCATTTCTTTAAGAAAATC +
Preference number: 4 (lower is better)
Translates to: KPSRKMSVRLLQ*KARAHHFFKKI
Trigger: GATTTTCTTAAAGAAATGATGTGCCCTAGCTTTCAATTGCAAGAGTCTGACAGACATTTTTCTTGATGGTTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 90 bp AAGAGCCGATGGGAGCCATCCCCGCTGTGCACAGCGCTCACAGGCTaGCGCAGCCCACTCATGACCTCCTGGACACAGAGGCAGTTGTGT +
Preference number: 5 (lower is better)
Translates to: KSRWEPSPLCTALTG*RSPLMTSWTQRQLC
Trigger: ACACAACTGCCTCTGTGTCCAGGAGGTCATGAGTGGGCTGCGGCAGCCTGTGAGCGCTGTGCACAGCGGGGATGGCTCCCATCGGCTCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 90 bp GCTCACACTTGGCAATTCTGCAGAAGTCTCCCTCCCAGCCGGGACTaGAGCAGCACTTGCCAGTGGGGGTGTAGTAGCCGTTTCGACAGA +
Preference number: 5 (lower is better)
Translates to: AHTWQFCRSLPPSRD*SSTCQWGCSSRFDR
Trigger: TCTGTCGAAACGGCTACTACACCCCCACTGGCAAGTGCTGCTGCAGTCCCGGCTGGGAGGGAGACTTCTGCAGAATTGCCAAGTGTGAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 90 bp ACGCCCCAATCCAGGGCTGTCACTCTGCAGGCAGCAAGATACTCGTaGGTAGAAGCCACCACACAGGATCTCTCCTCCACTGAGCAGCTC +
Preference number: 5 (lower is better)
Translates to: TPQSRAVTLQAARYS*VEATTQDLSSTEQL
Trigger: GAGCTGCTCAGTGGAGGAGAGATCCTGTGTGGTGGCTTCTACCCACGAGTATCTTGCTGCCTGCAGAGTGACAGCCCTGGATTGGGGCGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 90 bp CACGGCACATCTGCCTGGATCATGGAGGCCGTGGGCAAATACTTCTaGGGGCTGGTTGGTGCTGTTGAAGTGAGGGTTACTCCGAGGTAT +
Preference number: 5 (lower is better)
Translates to: HGTSAWIMEAVGKYF*GLVGAVEVRVTPRY
Trigger: ATACCTCGGAGTAACCCTCACTTCAACAGCACCAACCAGCCCCCAGAAGTATTTGCCCACGGCCTCCATGATCCAGGCAGATGTGCCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS TCA 90 bp AAGATACTCGTGGGTAGAAGCCACCACACAGGATCTCTCCTCCACTaGGCAGCTCCAGCTGGGACATCACCCGCCTGTCCCTTCTCTTTA +
Preference number: 5 (lower is better)
Translates to: KILVGRSHHTGSLLH*AAPAGTSPACPFSL
Trigger: TAAAGAGAAGGGACAGGCGGGTGATGTCCCAGCTGGAGCTGCTCAGTGGAGGAGAGATCCTGTGTGGTGGCTTCTACCCACGAGTATCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 90 bp CTCCAAATCCCAAGATGTGACCCGAAAAGTAGCCTCGACAGGAGCTaGTGGCACCCAGGCAGAGCGGCTTTTCTTGCCATTGCTTGGTCA +
Preference number: 5 (lower is better)
Translates to: LQIPRCDPKSSLDRS*WHPGRAAFLAIAWS
Trigger: TGACCAAGCAATGGCAAGAAAAGCCGCTCTGCCTGGGTGCCAGCAGCTCCTGTCGAGGCTACTTTTCGGGTCACATCTTGGGATTTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS TCA 90 bp CCCTTTTTACAGAGGCACTTGTTCGGTCTGACACAGACACCTCCATaGCGGCACGCTGGCTCACACTTGGCAATTCTGCAGAAGTCTCCC +
Preference number: 5 (lower is better)
Translates to: PFLQRHLFGLTQTPP*RHAGSHLAILQKSP
Trigger: GGGAGACTTCTGCAGAATTGCCAAGTGTGAGCCAGCGTGCCGTCATGGAGGTGTCTGTGTCAGACCGAACAAGTGCCTCTGTAAAAAGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 90 bp GGGAATGCGGGGAGCAGGGAGCACATTGGATCTCCTCCAGCAGCCTaGTGCATTCTGAGTTGTTGGTGGCAGAAAAGATCTTGTTCTCCA +
Preference number: 5 (lower is better)
Translates to: GNAGSREHIGSPPAA*CILSCWWQKRSCSP
Trigger: TGGAGAACAAGATCTTTTCTGCCACCAACAACTCAGAATGCAGCAGGCTGCTGGAGGAGATCCAATGTGCTCCCTGCTCCCCGCATTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 90 bp GAGCACATTGGATCTCCTCCAGCAGCCTGCTGCATTCTGAGTTGTTaGTGGCAGAAAAGATCTTGTTCTCCAGACGCCCCAATCCAGGGC +
Preference number: 5 (lower is better)
Translates to: EHIGSPPAACCILSC*WQKRSCSPDAPIQG
Trigger: GCCCTGGATTGGGGCGTCTGGAGAACAAGATCTTTTCTGCCACCAACAACTCAGAATGCAGCAGGCTGCTGGAGGAGATCCAATGTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 90 bp AAGCCATCAGGACCAAAGAGCAGCTGTCCCCCAAGATGCTTTCGGTaGAGCTCTGCGACTTCCAGAAACACCCTGGCTGTTCTCACATCA +
Preference number: 5 (lower is better)
Translates to: KPSGPKSSCPPRCFR*SSATSRNTLAVLTS
Trigger: TGATGTGAGAACAGCCAGGGTGTTTCTGGAAGTCGCAGAGCTCCACCGAAAGCATCTTGGGGGACAGCTGCTCTTTGGTCCTGATGGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS TCA 90 bp CATGGAGGCCGTGGGCAAATACTTCTGGGGGCTGGTTGGTGCTGTTaGAGTGAGGGTTACTCCGAGGTATGGAATAAGGCACATTGCACA +
Preference number: 5 (lower is better)
Translates to: HGGRGQILLGAGWCC*SEGYSEVWNKAHCT
Trigger: TGTGCAATGTGCCTTATTCCATACCTCGGAGTAACCCTCACTTCAACAGCACCAACCAGCCCCCAGAAGTATTTGCCCACGGCCTCCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 90 bp AATGCGGGGAGCAGGGAGCACATTGGATCTCCTCCAGCAGCCTGCTaGATTCTGAGTTGTTGGTGGCAGAAAAGATCTTGTTCTCCAGAC +
Preference number: 5 (lower is better)
Translates to: NAGSREHIGSPPAAC*ILSCWWQKRSCSPD
Trigger: GTCTGGAGAACAAGATCTTTTCTGCCACCAACAACTCAGAATGCAGCAGGCTGCTGGAGGAGATCCAATGTGCTCCCTGCTCCCCGCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 90 bp AGGACCAAAGAGCAGCTGTCCCCCAAGATGCTTTCGGTGGAGCTCTaGGACTTCCAGAAACACCCTGGCTGTTCTCACATCAACTTGATG +
Preference number: 5 (lower is better)
Translates to: RTKEQLSPKMLSVEL*DFQKHPGCSHINLM
Trigger: CATCAAGTTGATGTGAGAACAGCCAGGGTGTTTCTGGAAGTCGCAGAGCTCCACCGAAAGCATCTTGGGGGACAGCTGCTCTTTGGTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 90 bp CACATTGGATCTCCTCCAGCAGCCTGCTGCATTCTGAGTTGTTGGTaGCAGAAAAGATCTTGTTCTCCAGACGCCCCAATCCAGGGCTGT +
Preference number: 5 (lower is better)
Translates to: HIGSPPAACCILSCW*QKRSCSPDAPIQGC
Trigger: ACAGCCCTGGATTGGGGCGTCTGGAGAACAAGATCTTTTCTGCCACCAACAACTCAGAATGCAGCAGGCTGCTGGAGGAGATCCAATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS TCA 90 bp ATTGAGGACCAAGATAGCCCTTTTTACAGAGGCACTTGTTCGGTCTaGCACAGACACCTCCATGACGGCACGCTGGCTCACACTTGGCAA +
Preference number: 5 (lower is better)
Translates to: IEDQDSPFYRGTCSV*HRHLHDGTLAHTWQ
Trigger: TTGCCAAGTGTGAGCCAGCGTGCCGTCATGGAGGTGTCTGTGTCAGACCGAACAAGTGCCTCTGTAAAAAGGGCTATCTTGGTCCTCAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp CAGTGGAGTGTTGGTAAGACCAGAAGGGACCACCTCTTTTCTAGGGTAAGAGGGTGGACACAGAGGCAGTaGTGTTTGTGTTTTCTGCTG +
Preference number: 5 (lower is better)
Translates to: QWSVGKTRRDHLFSRVRGWTQRQ*CLCFLL
Trigger: CAGCAGAAAACACAAACACAACTGCCTCTGTGTCCA...CCCTCTTACCCTAGAAAAGAGGTGGTCCCTTCTGGTCTTACCAACACTCCACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 90 bp ATCCAGCAAGTAAGACGTCATGTCAATGATCTGATCAAGGATACCTaGCCTGGTCACTCTGCGGACGTTCCTGTCCACTTGTTCACATTG +
Preference number: 5 (lower is better)
Translates to: IQQVRRHVNDLIKDT*PGHSADVPVHLFTL
Trigger: CAATGTGAACAAGTGGACAGGAACGTCCGCAGAGTGACCAGGGCAGGTATCCTTGATCAGATCATTGACATGACGTCTTACTTGCTGGAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp AGATTACAATCTTACATCAAGCTGCTTGTTCAGAAATTCACCAAGGAGTTTGGAGGAGCAGGGAGCACATaGGATCTCCTCCAGCAGCCT +
Preference number: 5 (lower is better)
Translates to: RLQSYIKLLVQKFTKEFGGAGST*DLLQQP
Trigger: AGGCTGCTGGAGGAGATCCAATGTGCTCCCTGCTCC...TCCAAACTCCTTGGTGAATTTCTGAACAAGCAGCTTGATGTAAGATTGTAATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 90 bp GAATATGGCCTCGGCAAGTATAAAAGAATTCTTTGCAGTAGTCTTTaGAGAGGAGTGGAAGTGCTAGGTCCCCATCCAGGACATCTCTTT +
Preference number: 5 (lower is better)
Translates to: EYGLGKYKRILCSSL*RGVEVLGPHPGHLF
Trigger: AAAGAGATGTCCTGGATGGGGACCTAGCACTTCCACTCCTCTGCAAAGACTACTGCAAAGAATTCTTTTATACTTGCCGAGGCCATATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp AAGAGCACACACTGTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGGTGGCAGAAAAGATCTaGTTCTCCAGACGCCCCAAT +
Preference number: 5 (lower is better)
Translates to: KSTHCSLLIAQTLIFLLWVAEKI*FSRRPN
Trigger: ATTGGGGCGTCTGGAGAACAAGATCTTTTCTGCCAC...CCATAGCAAGAATATCAGAGTCTGTGCGATTAAAAGGCTACAGTGTGTGCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp AGATGCTCAGACAATAAGCTGATGTACCATTCACAAACCTTGCTGATATACTTCTGCTGGTCCTCTGACTaGCTTTCTCGGGAAGTCTGG +
Preference number: 5 (lower is better)
Translates to: RCSDNKLMYHSQTLLIYFCWSSD*LSREVW
Trigger: CCAGACTTCCCGAGAAAGCAAGTCAGAGGACCAGCA...GAAGTATATCAGCAAGGTTTGTGAATGGTACATCAGCTTATTGTCTGAGCATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp AAGAGCACACACTGTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGCAGAGGCAGTTGTGTTaGTGTTTTCTGCTGATCCCC +
Preference number: 5 (lower is better)
Translates to: KSTHCSLLIAQTLIFLLWQRQLC*CFLLIP
Trigger: GGGGATCAGCAGAAAACACAAACACAACTGCCTCTG...CCATAGCAAGAATATCAGAGTCTGTGCGATTAAAAGGCTACAGTGTGTGCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp TACATGTTGGCACAAGTACACATTGCTACATTAGATCCACAGCACATTGAAGGCTTTTCTTGCCATTGCTaGGTCACTGGGCTTTGCTGG +
Preference number: 5 (lower is better)
Translates to: YMLAQVHIATLDPQHIEGFSCHC*VTGLCW
Trigger: CCAGCAAAGCCCAGTGACCAAGCAATGGCAAGAAAA...GCCTTCAATGTGCTGTGGATCTAATGTAGCAATGTGTACTTGTGCCAACATGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp TCATTTTCTGGGCATAGAACTTTGGTTGTGTTCTCTGAAAGTACAGACCACATAGCAGAGCGGCTTTTCTaGCCATTGCTTGGTCACTGG +
Preference number: 5 (lower is better)
Translates to: SFSGHRTLVVFSESTDHIAERLF*PLLGHW
Trigger: CCAGTGACCAAGCAATGGCAAGAAAAGCCGCTCTGC...TATGTGGTCTGTACTTTCAGAGAACACAACCAAAGTTCTATGCCCAGAAAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp AAGAGCACACACTGTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGGACGTTCCTGTCCACTaGTTCACATTGAGGACCAAG +
Preference number: 5 (lower is better)
Translates to: KSTHCSLLIAQTLIFLLWDVPVH*FTLRTK
Trigger: CTTGGTCCTCAATGTGAACAAGTGGACAGGAACGTC...CCATAGCAAGAATATCAGAGTCTGTGCGATTAAAAGGCTACAGTGTGTGCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp AGATGCTCAGACAATAAGCTGATGTACCATTCACAAACCTTGCTGATATACTTCCACGCTGGCTCACACTaGGCAATTCTGCAGAAGTCT +
Preference number: 5 (lower is better)
Translates to: RCSDNKLMYHSQTLLIYFHAGSH*AILQKS
Trigger: AGACTTCTGCAGAATTGCCAAGTGTGAGCCAGCGTG...GAAGTATATCAGCAAGGTTTGTGAATGGTACATCAGCTTATTGTCTGAGCATCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 90 bp ACAGCCTCTGTAAACAAATCCACCAACCAAAGGGCCGTTACTGAATaGCTTGAATTCAAGAAGAGATGGCTCACTTTCATAATCTCTTCC +
Preference number: 5 (lower is better)
Translates to: TASVNKSTNQRAVTE*LEFKKRWLTFIISS
Trigger: GGAAGAGATTATGAAAGTGAGCCATCTCTTCTTGAATTCAAGCCATTCAGTAACGGCCCTTTGGTTGGTGGATTTGTTTACAGAGGCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp AAGAGCACACACTGTAGCCTTTTAATCGCACAGACTCTGATATTCTTGCTATGGTTTTTACAGAGGCACTaGTTCGGTCTGACACAGACA +
Preference number: 5 (lower is better)
Translates to: KSTHCSLLIAQTLIFLLWFLQRH*FGLTQT
Trigger: TGTCTGTGTCAGACCGAACAAGTGCCTCTGTAAAAA...CCATAGCAAGAATATCAGAGTCTGTGCGATTAAAAGGCTACAGTGTGTGCTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS TCA 90 bp TTATTCCACTTTGAACAAGTTTGTGAATGTCCAAGTAAGGCTCCTTaGACAGTTCTCCTTCTGGGGTTAGAATCTTCACGTAGCCTTCCT +
Preference number: 5 (lower is better)
Translates to: LFHFEQVCECPSKAP*TVLLLGLESSRSLP
Trigger: AGGAAGGCTACGTGAAGATTCTAACCCCAGAAGGAGAACTGTTCAAGGAGCCTTACTTGGACATTCACAAACTTGTTCAAAGTGGAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp AGATGCTCAGACAATAAGCTGATGTACCATTCACAAACCTTGCTGATATACTTCCTGCTGCATTCTGAGTaGTTGGTGGCAGAAAAGATC +
Preference number: 5 (lower is better)
Translates to: RCSDNKLMYHSQTLLIYFLLHSE*LVAEKI
Trigger: GATCTTTTCTGCCACCAACAACTCAGAATGCAGCAG...GAAGTATATCAGCAAGGTTTGTGAATGGTACATCAGCTTATTGTCTGAGCATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp CACAAAATATACAATAGAAGCAGCACATTCATGAAGACTGCTCTTTCAAATAGGCGGCTTTTCTTGCCATaGCTTGGTCACTGGGCTTTG +
Preference number: 5 (lower is better)
Translates to: HKIYNRSSTFMKTALSNRRLFLP*LGHWAL
Trigger: CAAAGCCCAGTGACCAAGCAATGGCAAGAAAAGCCG...CCTATTTGAAAGAGCAGTCTTCATGAATGTGCTGCTTCTATTGTATATTTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp AGATGCTCAGACAATAAGCTGATGTACCATTCACAAACCTTGCTGATATACTTCGTCCACTTGTTCACATaGAGGACCAAGATAGCCCTT +
Preference number: 5 (lower is better)
Translates to: RCSDNKLMYHSQTLLIYFVHLFT*RTKIAL
Trigger: AAGGGCTATCTTGGTCCTCAATGTGAACAAGTGGAC...GAAGTATATCAGCAAGGTTTGTGAATGGTACATCAGCTTATTGTCTGAGCATCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp TCATTTTCTGGGCATAGAACTTTGGTTGTGTTCTCTGAAAGTACAGACCACATACCGTTACTGAATGGCTaGAATTCAAGAAGAGATGGC +
Preference number: 5 (lower is better)
Translates to: SFSGHRTLVVFSESTDHIPLLNG*NSRRDG
Trigger: GCCATCTCTTCTTGAATTCAAGCCATTCAGTAACGG...TATGTGGTCTGTACTTTCAGAGAACACAACCAAAGTTCTATGCCCAGAAAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp TCATCTGATGGGAGTGACTACATGTTGGCACAAGTACACATTGCTACATTAGATTTCATCAGCAGTTGTTaGAAGAAGACCTGGAATATG +
Preference number: 5 (lower is better)
Translates to: SSDGSDYMLAQVHIATLDFISSC*KKTWNM
Trigger: CATATTCCAGGTCTTCTTCAAACAACTGCTGATGAA...ATCTAATGTAGCAATGTGTACTTGTGCCAACATGTAGTCACTCCCATCAGATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 90 bp CGATCTTGTAGAGTTTTCCATTGTGAGTCTGGGTCATACTCTTACTaGTTGATAGAATGTAAACCTCTCCTAATTCATCTTCTCCAAATC +
Preference number: 5 (lower is better)
Translates to: RSCRVFHCESGSYSY*LIECKPLLIHLLQI
Trigger: GATTTGGAGAAGATGAATTAGGAGAGGTTTACATTCTATCAAGCAGTAAGAGTATGACCCAGACTCACAATGGAAAACTCTACAAGATCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp CACAAAATATACAATAGAAGCAGCACATTCATGAAGACTGCTCTTTCAAATAGGCTGCATTCTGAGTTGTaGGTGGCAGAAAAGATCTTG +
Preference number: 5 (lower is better)
Translates to: HKIYNRSSTFMKTALSNRLHSEL*VAEKIL
Trigger: CAAGATCTTTTCTGCCACCAACAACTCAGAATGCAG...CCTATTTGAAAGAGCAGTCTTCATGAATGTGCTGCTTCTATTGTATATTTTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp TCATTTTCTGGGCATAGAACTTTGGTTGTGTTCTCTGAAAGTACAGACCACATATCATACTCTTACTGCTaGATAGAATGTAAACCTCTC +
Preference number: 5 (lower is better)
Translates to: SFSGHRTLVVFSESTDHISYSYC*IECKPL
Trigger: GAGAGGTTTACATTCTATCAAGCAGTAAGAGTATGA...TATGTGGTCTGTACTTTCAGAGAACACAACCAAAGTTCTATGCCCAGAAAATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS-3UTR CAA 90 bp AGAAATGAAGATTACAATCTTACATCAAGCTGCTTGTTCAGAAATTCACCAAGGAAAATTCATCAGCAGTaGTTTGAAGAAGACCTGGAA +
Preference number: 5 (lower is better)
Translates to: RNEDYNLTSSCLFRNSPRKIHQQ*FEEDLE
Trigger: TTCCAGGTCTTCTTCAAACAACTGCTGATGAATTTT...CCTTGGTGAATTTCTGAACAAGCAGCTTGATGTAAGATTGTAATCTTCATTTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 72 bp TGGGAGCCATCCCCGCTGTGCACAGCGCTCACAGGCTaGCGCAGCCCACTCATGACCTCCTGGACACAGAGG +
Preference number: 6 (lower is better)
Translates to: WEPSPLCTALTG*RSPLMTSWTQR
Trigger: CCTCTGTGTCCAGGAGGTCATGAGTGGGCTGCGGCAGCCTGTGAGCGCTGTGCACAGCGGGGATGGCTCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS TCA 72 bp GTGGGTAGAAGCCACCACACAGGATCTCTCCTCCACTaGGCAGCTCCAGCTGGGACATCACCCGCCTGTCCC +
Preference number: 6 (lower is better)
Translates to: VGRSHHTGSLLH*AAPAGTSPACP
Trigger: GGGACAGGCGGGTGATGTCCCAGCTGGAGCTGCTCAGTGGAGGAGAGATCCTGTGTGGTGGCTTCTACCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 72 bp CGATCCACGGCACATCTGCCTGGATCATGGAGGCCGTaGGCAAATACTTCTGGGGGCTGGTTGGTGCTGTTG +
Preference number: 6 (lower is better)
Translates to: RSTAHLPGSWRP*ANTSGGWLVLL
Trigger: CAACAGCACCAACCAGCCCCCAGAAGTATTTGCCCACGGCCTCCATGATCCAGGCAGATGTGCCGTGGATCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 72 bp GCCGTTTCGACAGAGCCGGGAGCAATCGGAGGTCAGTaGCTGGGCAGGTTGAACTGTGACTCTGCATTCCTC +
Preference number: 6 (lower is better)
Translates to: AVSTEPGAIGGQ*LGRLNCDSAFL
Trigger: GAGGAATGCAGAGTCACAGTTCAACCTGCCCAGCCACTGACCTCCGATTGCTCCCGGCTCTGTCGAAACGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 72 bp GCGCTCACAGGCTGCCGCAGCCCACTCATGACCTCCTaGACACAGAGGCAGTTGTGTTTGTGTTTTCTGCTG +
Preference number: 6 (lower is better)
Translates to: ALTGCRSPLMTS*TQRQLCLCFLL
Trigger: CAGCAGAAAACACAAACACAACTGCCTCTGTGTCCAGGAGGTCATGAGTGGGCTGCGGCAGCCTGTGAGCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 72 bp GTAGGATGTCGATCCACGGCACATCTGCCTGGATCATaGAGGCCGTGGGCAAATACTTCTGGGGGCTGGTTG +
Preference number: 6 (lower is better)
Translates to: VGCRSTAHLPGS*RPWANTSGGWL
Trigger: CAACCAGCCCCCAGAAGTATTTGCCCACGGCCTCCATGATCCAGGCAGATGTGCCGTGGATCGACATCCTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 72 bp GAGCAGCTGTCCCCCAAGATGCTTTCGGTGGAGCTCTaGGACTTCCAGAAACACCCTGGCTGTTCTCACATC +
Preference number: 6 (lower is better)
Translates to: EQLSPKMLSVEL*DFQKHPGCSHI
Trigger: GATGTGAGAACAGCCAGGGTGTTTCTGGAAGTCGCAGAGCTCCACCGAAAGCATCTTGGGGGACAGCTGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 72 bp CCAAGATGTGACCCGAAAAGTAGCCTCGACAGGAGCTaGTGGCACCCAGGCAGAGCGGCTTTTCTTGCCATT +
Preference number: 6 (lower is better)
Translates to: PRCDPKSSLDRS*WHPGRAAFLAI
Trigger: AATGGCAAGAAAAGCCGCTCTGCCTGGGTGCCAGCAGCTCCTGTCGAGGCTACTTTTCGGGTCACATCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 72 bp TCCAGGGCTGTCACTCTGCAGGCAGCAAGATACTCGTaGGTAGAAGCCACCACACAGGATCTCTCCTCCACT +
Preference number: 6 (lower is better)
Translates to: SRAVTLQAARYS*VEATTQDLSST
Trigger: AGTGGAGGAGAGATCCTGTGTGGTGGCTTCTACCCACGAGTATCTTGCTGCCTGCAGAGTGACAGCCCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 72 bp GTTCGGTCTGACACAGACACCTCCATGACGGCACGCTaGCTCACACTTGGCAATTCTGCAGAAGTCTCCCTC +
Preference number: 6 (lower is better)
Translates to: VRSDTDTSMTAR*LTLGNSAEVSL
Trigger: GAGGGAGACTTCTGCAGAATTGCCAAGTGTGAGCCAGCGTGCCGTCATGGAGGTGTCTGTGTCAGACCGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CAA 90 bp TCCAGCAGCCTGCTGCATTCTGAGTTGTTGGTGGCAGAAAAGATCTaGTTCTCCAGACGCCCCAATCCAGGGCTGTCACTCTGCAGGCAG +
Preference number: 6 (lower is better)
Translates to: SSSLLHSELLVAEKI*FSRRPNPGLSLCRQ
Trigger: CTGCCTGCAGAGTGACAGCCCTGGATTGGGGCGTCTGGAGAACAAGATCTTTTCTGCCACCAACAACTCAGAATGCAGCAGGCTGCTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CAA 90 bp CAGGAGCTGCTGGCACCCAGGCAGAGCGGCTTTTCTTGCCATTGCTaGGTCACTGGGCTTTGCTGGAGGGTTAAGAAATTCCCATTGCGA +
Preference number: 6 (lower is better)
Translates to: QELLAPRQSGFSCHC*VTGLCWRVKKFPLR
Trigger: TCGCAATGGGAATTTCTTAACCCTCCAGCAAAGCCCAGTGACCAAGCAATGGCAAGAAAAGCCGCTCTGCCTGGGTGCCAGCAGCTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 72 bp AAGCCATCAGGACCAAAGAGCAGCTGTCCCCCAAGATaGTTTCGGTGGAGCTCTGCGACTTCCAGAAACACC +
Preference number: 6 (lower is better)
Translates to: KPSGPKSSCPPR*FRWSSATSRNT
Trigger: GGTGTTTCTGGAAGTCGCAGAGCTCCACCGAAAGCATCTTGGGGGACAGCTGCTCTTTGGTCCTGATGGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 72 bp TCTGCCTGGATCATGGAGGCCGTGGGCAAATACTTCTaGGGGCTGGTTGGTGCTGTTGAAGTGAGGGTTACT +
Preference number: 6 (lower is better)
Translates to: SAWIMEAVGKYF*GLVGAVEVRVT
Trigger: AGTAACCCTCACTTCAACAGCACCAACCAGCCCCCAGAAGTATTTGCCCACGGCCTCCATGATCCAGGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CAA 90 bp GGAGCACATTGGATCTCCTCCAGCAGCCTGCTGCATTCTGAGTTGTaGGTGGCAGAAAAGATCTTGTTCTCCAGACGCCCCAATCCAGGG +
Preference number: 6 (lower is better)
Translates to: GAHWISSSSLLHSEL*VAEKILFSRRPNPG
Trigger: CCCTGGATTGGGGCGTCTGGAGAACAAGATCTTTTCTGCCACCAACAACTCAGAATGCAGCAGGCTGCTGGAGGAGATCCAATGTGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS TCA 72 bp CAAGATAGCCCTTTTTACAGAGGCACTTGTTCGGTCTaGCACAGACACCTCCATGACGGCACGCTGGCTCAC +
Preference number: 6 (lower is better)
Translates to: QDSPFYRGTCSV*HRHLHDGTLAH
Trigger: GTGAGCCAGCGTGCCGTCATGGAGGTGTCTGTGTCAGACCGAACAAGTGCCTCTGTAAAAAGGGCTATCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 72 bp AGTGAGGGTTACTCCGAGGTATGGAATAAGGCACATTaGACATGTCGGTGTCCACGTCCAGCCTCAGCACAG +
Preference number: 6 (lower is better)
Translates to: SEGYSEVWNKAH*TCRCPRPASAQ
Trigger: CTGTGCTGAGGCTGGACGTGGACACCGACATGTGCAATGTGCCTTATTCCATACCTCGGAGTAACCCTCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CAA 90 bp CAGGGAGCACATTGGATCTCCTCCAGCAGCCTGCTGCATTCTGAGTaGTTGGTGGCAGAAAAGATCTTGTTCTCCAGACGCCCCAATCCA +
Preference number: 6 (lower is better)
Translates to: QGAHWISSSSLLHSE*LVAEKILFSRRPNP
Trigger: TGGATTGGGGCGTCTGGAGAACAAGATCTTTTCTGCCACCAACAACTCAGAATGCAGCAGGCTGCTGGAGGAGATCCAATGTGCTCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS TCA 72 bp GATACTGTGTATTCCACAACCCGAAGAATGTGGTCGTaGGGCCCAATAGCCCACCGTTCCTGGTTGGTGGTA +
Preference number: 6 (lower is better)
Translates to: DTVYSTTRRMWS*GPIAHRSWLVV
Trigger: TACCACCAACCAGGAACGGTGGGCTATTGGGCCTCACGACCACATTCTTCGGGTTGTGGAATACACAGTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 72 bp TCTCCTCCAGCAGCCTGCTGCATTCTGAGTTGTTGGTaGCAGAAAAGATCTTGTTCTCCAGACGCCCCAATC +
Preference number: 6 (lower is better)
Translates to: SPPAACCILSCW*QKRSCSPDAPI
Trigger: GATTGGGGCGTCTGGAGAACAAGATCTTTTCTGCCACCAACAACTCAGAATGCAGCAGGCTGCTGGAGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CAA 90 bp ACCTGCCCTGGTCACTCTGCGGACGTTCCTGTCCACTTGTTCACATaGAGGACCAAGATAGCCCTTTTTACAGAGGCACTTGTTCGGTCT +
Preference number: 6 (lower is better)
Translates to: TCPGHSADVPVHLFT*RTKIALFTEALVRS
Trigger: AGACCGAACAAGTGCCTCTGTAAAAAGGGCTATCTTGGTCCTCAATGTGAACAAGTGGACAGGAACGTCCGCAGAGTGACCAGGGCAGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 72 bp AGCAGGGAGCACATTGGATCTCCTCCAGCAGCCTGCTaGATTCTGAGTTGTTGGTGGCAGAAAAGATCTTGT +
Preference number: 6 (lower is better)
Translates to: SREHIGSPPAAC*ILSCWWQKRSC
Trigger: ACAAGATCTTTTCTGCCACCAACAACTCAGAATGCAGCAGGCTGCTGGAGGAGATCCAATGTGCTCCCTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 72 bp GTAAGACGTCATGTCAATGATCTGATCAAGGATACCTaGCCTGGTCACTCTGCGGACGTTCCTGTCCACTTG +
Preference number: 6 (lower is better)
Translates to: VRRHVNDLIKDT*PGHSADVPVHL
Trigger: CAAGTGGACAGGAACGTCCGCAGAGTGACCAGGGCAGGTATCCTTGATCAGATCATTGACATGACGTCTTAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 72 bp TTTCTCGTAGTCTTCCATCTGGCCCAAGTAGTTAGATaGTGGTCCTCTGACTTGCTTTCTCGGGAAGTCTGG +
Preference number: 6 (lower is better)
Translates to: FLVVFHLAQVVR*WSSDLLSREVW
Trigger: CCAGACTTCCCGAGAAAGCAAGTCAGAGGACCAGCATCTAACTACTTGGGCCAGATGGAAGACTACGAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 72 bp GGCTTTTCTTGCCATTGCTTGGTCACTGGGCTTTGCTaGAGGGTTAAGAAATTCCCATTGCGATCTCCGAAC +
Preference number: 6 (lower is better)
Translates to: GFSCHCLVTGLC*RVKKFPLRSPN
Trigger: GTTCGGAGATCGCAATGGGAATTTCTTAACCCTCCAGCAAAGCCCAGTGACCAAGCAATGGCAAGAAAAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CAA 72 bp GACTTCCAGAAACACCCTGGCTGTTCTCACATCAACTaGATGGGGGTTTTTCCTGGATACTGTGTATTCCAC +
Preference number: 6 (lower is better)
Translates to: DFQKHPGCSHIN*MGVFPGYCVFH
Trigger: GTGGAATACACAGTATCCAGGAAAAACCCCCATCAAGTTGATGTGAGAACAGCCAGGGTGTTTCTGGAAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS TCA 72 bp ACTTCCAGAAACACCCTGGCTGTTCTCACATCAACTTaGTGGGGGTTTTTCCTGGATACTGTGTATTCCACA +
Preference number: 6 (lower is better)
Translates to: TSRNTLAVLTST*WGFFLDTVYST
Trigger: TGTGGAATACACAGTATCCAGGAAAAACCCCCATCAAGTTGATGTGAGAACAGCCAGGGTGTTTCTGGAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS GCA 72 bp TCACTGGGCTTTGCTGGAGGGTTAAGAAATTCCCATTaGGATCTCCGAACACATAGCTTCCGTACAATCTTT +
Preference number: 6 (lower is better)
Translates to: SLGFAGGLRNSH*DLRTHSFRTIF
Trigger: AAAGATTGTACGGAAGCTATGTGTTCGGAGATCGCAATGGGAATTTCTTAACCCTCCAGCAAAGCCCAGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 72 bp TATAAGACACATACAGCTTTCCATTTTTCTTGTAATTaGGATGGAATGCCAGGCTTAGCAGGCCCCTTTCGT +
Preference number: 6 (lower is better)
Translates to: YKTHTAFHFSCN*DGMPGLAGPFR
Trigger: ACGAAAGGGGCCTGCTAAGCCTGGCATTCCATCCCAATTACAAGAAAAATGGAAAGCTGTATGTGTCTTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS TCA 72 bp TTTGAACAAGTTTGTGAATGTCCAAGTAAGGCTCCTTaGACAGTTCTCCTTCTGGGGTTAGAATCTTCACGT +
Preference number: 6 (lower is better)
Translates to: FEQVCECPSKAP*TVLLLGLESSR
Trigger: ACGTGAAGATTCTAACCCCAGAAGGAGAACTGTTCAAGGAGCCTTACTTGGACATTCACAAACTTGTTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 72 bp GTAAACAAATCCACCAACCAAAGGGCCGTTACTGAATaGCTTGAATTCAAGAAGAGATGGCTCACTTTCATA +
Preference number: 6 (lower is better)
Translates to: VNKSTNQRAVTE*LEFKKRWLTFI
Trigger: TATGAAAGTGAGCCATCTCTTCTTGAATTCAAGCCATTCAGTAACGGCCCTTTGGTTGGTGGATTTGTTTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CAA 90 bp GATGACCTGTTTTTCCCGTTGGAATCTGAGCAAAGTATTGTTAAATaGATGTTTATATCAGTAGGATGTCGATCCACGGCACATCTGCCT +
Preference number: 6 (lower is better)
Translates to: DDLFFPLESEQSIVK*MFISVGCRSTAHLP
Trigger: AGGCAGATGTGCCGTGGATCGACATCCTACTGATATAAACATCAATTTAACAATACTTTGCTCAGATTCCAACGGGAAAAACAGGTCATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CCA 72 bp AGGGCCGTTACTGAATGGCTTGAATTCAAGAAGAGATaGCTCACTTTCATAATCTCTTCCCTTTATTATCTG +
Preference number: 6 (lower is better)
Translates to: RAVTEWLEFKKR*LTFIISSLYYL
Trigger: CAGATAATAAAGGGAAGAGATTATGAAAGTGAGCCATCTCTTCTTGAATTCAAGCCATTCAGTAACGGCCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CAA 90 bp TCTTGTAGAGTTTTCCATTGTGAGTCTGGGTCATACTCTTACTGCTaGATAGAATGTAAACCTCTCCTAATTCATCTTCTCCAAATCCCA +
Preference number: 6 (lower is better)
Translates to: SCRVFHCESGSYSYC*IECKPLLIHLLQIP
Trigger: TGGGATTTGGAGAAGATGAATTAGGAGAGGTTTACATTCTATCAAGCAGTAAGAGTATGACCCAGACTCACAATGGAAAACTCTACAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CAA 72 bp ATCTGTAGGATTCTGGCTGATGACCTGTTTTTCCCGTaGGAATCTGAGCAAAGTATTGTTAAATTGATGTTT +
Preference number: 6 (lower is better)
Translates to: ICRILADDLFFP*ESEQSIVKLMF
Trigger: AAACATCAATTTAACAATACTTTGCTCAGATTCCAACGGGAAAAACAGGTCATCAGCCAGAATCCTACAGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4
CDS CAA 90 bp CCCTTTATTATCTGTAGGATTCTGGCTGATGACCTGTTTTTCCCGTaGGAATCTGAGCAAAGTATTGTTAAATTGATGTTTATATCAGTA +
Preference number: 6 (lower is better)
Translates to: PFIICRILADDLFFP*ESEQSIVKLMFISV
Trigger: TACTGATATAAACATCAATTTAACAATACTTTGCTCAGATTCCAACGGGAAAAACAGGTCATCAGCCAGAATCCTACAGATAATAAAGGG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079038.4