RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HGH1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022554

Ensembl transcript IDs: ENSMUST00000023213.8

Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGGGCACAGGATTGGGCAGCACCCTTGGGCTTCTCACCATTTACTaGGCATTGACCCTAGAACCCTGCGCCAACACTGGCAAAGGTGGG +
Preference number: 1 (lower is better)
Translates to: QGTGLGSTLGLLTIY*ALTLEPCANTGKGG
Trigger: CCCACCTTTGCCAGTGTTGGCGCAGGGTTCTAGGGTCAATGCCCAGTAAATGGTGAGAAGCCCAAGGGTGCTGCCCAATCCTGTGCCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR TCA 90 bp ATCTCTAAGCCTACCCACGTCCAGACCCCTCAGTGCCTTCAGGAATaGAAACCTAGTTGGCTTCCCAGGGCTTGCAGTATTTTCAGTCCA +
Preference number: 1 (lower is better)
Translates to: ISKPTHVQTPQCLQE*KPSWLPRACSIFSP
Trigger: TGGACTGAAAATACTGCAAGCCCTGGGAAGCCAACTAGGTTTTCATTCCTGAAGGCACTGAGGGGTCTGGACGTGGGTAGGCTTAGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR CAA 90 bp ACAGGATTGGGCAGCACCCTTGGGCTTCTCACCATTTACTGGGCATaGACCCTAGAACCCTGCGCCAACACTGGCAAAGGTGGGTCTGAA +
Preference number: 2 (lower is better)
Translates to: TGLGSTLGLLTIYWA*TLEPCANTGKGGSE
Trigger: TTCAGACCCACCTTTGCCAGTGTTGGCGCAGGGTTCTAGGGTCAATGCCCAGTAAATGGTGAGAAGCCCAAGGGTGCTGCCCAATCCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR-3UTR GCA 90 bp CCAGCTGGGAATAGGCTCTTCATAGCTCCAGTGACCACCGGCATCCTGCCTCATTTGACCCTAGAACCCTaGGCCAACACTGGCAAAGGT +
Preference number: 2 (lower is better)
Translates to: PAGNRLFIAPVTTGILPHLTLEP*ANTGKG
Trigger: ACCTTTGCCAGTGTTGGCGCAGGGTTCTAGGGTCAA...ATGAGGCAGGATGCCGGTGGTCACTGGAGCTATGAAGAGCCTATTCCCAGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR CAA 90 bp GCTCTGAACTATGTGCATTATTGCCGGTTGCAACAGGGCACAGGATaGGGCAGCACCCTTGGGCTTCTCACCATTTACTGGGCATTGACC +
Preference number: 2 (lower is better)
Translates to: ALNYVHYCRLQQGTG*GSTLGLLTIYWALT
Trigger: GGTCAATGCCCAGTAAATGGTGAGAAGCCCAAGGGTGCTGCCCAATCCTGTGCCCTGTTGCAACCGGCAATAATGCACATAGTTCAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR-3UTR TCA 90 bp TGGCTTCCCAGGGCTTGCAGTATTTTCAGTCCAGTCCTATCACCAGCTGGGAATTGGCAAAGGTGGGTCTaGAGCTGGCATTCAGGCCAA +
Preference number: 2 (lower is better)
Translates to: WLPRACSIFSPVLSPAGNWQRWV*SWHSGQ
Trigger: TTGGCCTGAATGCCAGCTTCAGACCCACCTTTGCCA...ATTCCCAGCTGGTGATAGGACTGGACTGAAAATACTGCAAGCCCTGGGAAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR CAA 90 bp TGTCTTTTAAGGTCTTGGGCAAGGAAAGCAAGAAGACTCCGAAGGTaGGGGCTCACGGCGCTGTTTACATCTCTAAGCCTACCCACGTCC +
Preference number: 2 (lower is better)
Translates to: CLLRSWARKARRLRR*GLTALFTSLSLPTS
Trigger: GGACGTGGGTAGGCTTAGAGATGTAAACAGCGCCGTGAGCCCCAACCTTCGGAGTCTTCTTGCTTTCCTTGCCCAAGACCTTAAAAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR-3UTR CCA 90 bp GAGAAACGGAGGCAGCAAATGGGAAACCCAGCAAGTCATCCAGAGACAGGCTCAATTGGGCAGCACCCTTaGGCTTCTCACCATTTACTG +
Preference number: 2 (lower is better)
Translates to: EKRRQQMGNPASHPETGSIGQHP*ASHHLL
Trigger: CAGTAAATGGTGAGAAGCCCAAGGGTGCTGCCCAAT...TGAGCCTGTCTCTGGATGACTTGCTGGGTTTCCCATTTGCTGCCTCCGTTTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR-3UTR GCA 90 bp CGAGGATCCAAGTGTAGTCTGTCTTTTAAGGTCTTGGGCAAGGAAAGCAAGAAGTGGCTTCCCAGGGCTTaGAGTATTTTCAGTCCAGTC +
Preference number: 2 (lower is better)
Translates to: RGSKCSLSFKVLGKESKKWLPRA*SIFSPV
Trigger: GACTGGACTGAAAATACTGCAAGCCCTGGGAAGCCA...CTTCTTGCTTTCCTTGCCCAAGACCTTAAAAGACAGACTACACTTGGATCCTCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR-3UTR TCA 90 bp CGAGGATCCAAGTGTAGTCTGTCTTTTAAGGTCTTGGGCAAGGAAAGCAAGAAGTCAGTAGTGCAGCTCTaGACTATGTGCATTATTGCC +
Preference number: 2 (lower is better)
Translates to: RGSKCSLSFKVLGKESKKSVVQL*TMCIIA
Trigger: GGCAATAATGCACATAGTTCAGAGCTGCACTACTGA...CTTCTTGCTTTCCTTGCCCAAGACCTTAAAAGACAGACTACACTTGGATCCTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR CCA 72 bp GGATTGGGCAGCACCCTTGGGCTTCTCACCATTTACTaGGCATTGACCCTAGAACCCTGCGCCAACACTGGC +
Preference number: 3 (lower is better)
Translates to: GLGSTLGLLTIY*ALTLEPCANTG
Trigger: GCCAGTGTTGGCGCAGGGTTCTAGGGTCAATGCCCAGTAAATGGTGAGAAGCCCAAGGGTGCTGCCCAATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR-3UTR CAA 90 bp GAGGCAGCAAATGGGAAACCCAGCAAGTCATCCAGAGACAGGCTCACAGGCTCGACCATTTACTGGGCATaGACCCTAGAACCCTGCGCC +
Preference number: 3 (lower is better)
Translates to: EAANGKPSKSSRDRLTGSTIYWA*TLEPCA
Trigger: GGCGCAGGGTTCTAGGGTCAATGCCCAGTAAATGGT...CGAGCCTGTGAGCCTGTCTCTGGATGACTTGCTGGGTTTCCCATTTGCTGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR CCA 72 bp CCGGTTGCAACAGGGCACAGGATTGGGCAGCACCCTTaGGCTTCTCACCATTTACTGGGCATTGACCCTAGA +
Preference number: 3 (lower is better)
Translates to: PVATGHRIGQHP*ASHHLLGIDPR
Trigger: TCTAGGGTCAATGCCCAGTAAATGGTGAGAAGCCCAAGGGTGCTGCCCAATCCTGTGCCCTGTTGCAACCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR-3UTR CAA 90 bp AGCAAATGGGAAACCCAGCAAGTCATCCAGAGACAGGCTCACAGGCTCGGATGGGATTGGGCAGCACCCTaGGGCTTCTCACCATTTACT +
Preference number: 3 (lower is better)
Translates to: SKWETQQVIQRQAHRLGWDWAAP*GFSPFT
Trigger: AGTAAATGGTGAGAAGCCCAAGGGTGCTGCCCAATC...CCATCCGAGCCTGTGAGCCTGTCTCTGGATGACTTGCTGGGTTTCCCATTTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR-3UTR CAA 90 bp CACGGCGCTGTTTACATCTCTAAGCCTACCCACGTCCAGACCCCTCAGTGCCTTTTGGCTTCCCAGGGCTaGCAGTATTTTCAGTCCAGT +
Preference number: 3 (lower is better)
Translates to: HGAVYISKPTHVQTPQCLLASQG*QYFQSS
Trigger: ACTGGACTGAAAATACTGCAAGCCCTGGGAAGCCAA...AAGGCACTGAGGGGTCTGGACGTGGGTAGGCTTAGAGATGTAAACAGCGCCGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR TCA 72 bp CAGAACCCAGCCAGCTCCAGCTCAGTAGTGCAGCTCTaGACTATGTGCATTATTGCCGGTTGCAACAGGGCA +
Preference number: 3 (lower is better)
Translates to: QNPASSSSVVQL*TMCIIAGCNRA
Trigger: TGCCCTGTTGCAACCGGCAATAATGCACATAGTTCAGAGCTGCACTACTGAGCTGGAGCTGGCTGGGTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR TCA 72 bp CCTACCCACGTCCAGACCCCTCAGTGCCTTCAGGAATaGAAACCTAGTTGGCTTCCCAGGGCTTGCAGTATT +
Preference number: 3 (lower is better)
Translates to: PTHVQTPQCLQE*KPSWLPRACSI
Trigger: AATACTGCAAGCCCTGGGAAGCCAACTAGGTTTTCATTCCTGAAGGCACTGAGGGGTCTGGACGTGGGTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR CCA 72 bp ATGTGCATTATTGCCGGTTGCAACAGGGCACAGGATTaGGCAGCACCCTTGGGCTTCTCACCATTTACTGGG +
Preference number: 3 (lower is better)
Translates to: MCIIAGCNRAQD*AAPLGFSPFTG
Trigger: CCCAGTAAATGGTGAGAAGCCCAAGGGTGCTGCCCAATCCTGTGCCCTGTTGCAACCGGCAATAATGCACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR-3UTR CAA 90 bp GACGAGGATCCAAGTGTAGTCTGTCTTTTAAGGTCTTGGGCAAGGAAAGCAAGAGTGCATTATTGCCGGTaGCAACAGGGCACAGGATTG +
Preference number: 3 (lower is better)
Translates to: DEDPSVVCLLRSWARKARVHYCR*QQGTGL
Trigger: CAATCCTGTGCCCTGTTGCAACCGGCAATAATGCAC...TCTTGCTTTCCTTGCCCAAGACCTTAAAAGACAGACTACACTTGGATCCTCGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR TCA 72 bp TTGAAAAAGCTAACCAAGGAGCAGGTTCTATCTAGCTaGATGGCTAAGTCCCAATTCAACCTGGGAATAAGG +
Preference number: 3 (lower is better)
Translates to: LKKLTKEQVLSS*MAKSQFNLGIR
Trigger: CCTTATTCCCAGGTTGAATTGGGACTTAGCCATTCAGCTAGATAGAACCTGCTCCTTGGTTAGCTTTTTCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR TCA 90 bp TGCAACAGGGCACAGGATTGGGCAGCACCCTTGGGCTTCTCACCATTTACTGGGTCAGCCCAGGGCCACTaGGGGTCCAACACGCAGCGC +
Preference number: 4 (lower is better)
Translates to: CNRAQDWAAPLGFSPFTGSAQGH*GSNTQR
Trigger: GCGCTGCGTGTTGGACCCTCAGTGGCCCTGGGCTGA...CCCAGTAAATGGTGAGAAGCCCAAGGGTGCTGCCCAATCCTGTGCCCTGTTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR GCA 90 bp CACGGCGCTGTTTACATCTCTAAGCCTACCCACGTCCAGACCCCTCAGTGCCTTCCCTGGTCCCGTACCTaGTTCCGACCAGGTGCCGTG +
Preference number: 4 (lower is better)
Translates to: HGAVYISKPTHVQTPQCLPWSRT*FRPGAV
Trigger: CACGGCACCTGGTCGGAAGCAGGTACGGGACCAGGG...AAGGCACTGAGGGGTCTGGACGTGGGTAGGCTTAGAGATGTAAACAGCGCCGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR CCA 90 bp AAGAAGACTCCGAAGGTTGGGGCTCACGGCGCTGTTTACATCTCTAAGCCTACCATCGCGGGAAGGAGCTaGGGCCGGGGCCACCGCAAG +
Preference number: 4 (lower is better)
Translates to: KKTPKVGAHGAVYISKPTIAGRS*GRGHRK
Trigger: CTTGCGGTGGCCCCGGCCCCAGCTCCTTCCCGCGAT...GGTAGGCTTAGAGATGTAAACAGCGCCGTGAGCCCCAACCTTCGGAGTCTTCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR CCA 90 bp CATCCTGCCTCATCTGTAGGCAGCTGTGACAGAACCCAGCCAGCTCCAGCTCAGAGAGGCAGCAGCCGTTaGACCACGCACCTGTCTGGG +
Preference number: 4 (lower is better)
Translates to: HPASSVGSCDRTQPAPAQRGSSR*TTHLSG
Trigger: CCCAGACAGGTGCGTGGTCCAACGGCTGCTGCCTCT...CTGAGCTGGAGCTGGCTGGGTTCTGTCACAGCTGCCTACAGATGAGGCAGGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR CCA 90 bp AAGAAGACTCCGAAGGTTGGGGCTCACGGCGCTGTTTACATCTCTAAGCCTACCCCGCACATCGGGCTCTaGCTCCCAGCTGTGCAGCTC +
Preference number: 4 (lower is better)
Translates to: KKTPKVGAHGAVYISKPTPHIGL*LPAVQL
Trigger: GAGCTGCACAGCTGGGAGCCAGAGCCCGATGTGCGG...GGTAGGCTTAGAGATGTAAACAGCGCCGTGAGCCCCAACCTTCGGAGTCTTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR GCA 90 bp GCTCTTCATAGCTCCAGTGACCACCGGCATCCTGCCTCATCTGTAGGCAGCTGTAGCTCCTGTTGCTCTTaGTGGTCGAGCTCCTGGAGC +
Preference number: 4 (lower is better)
Translates to: ALHSSSDHRHPASSVGSCSSCCS*WSSSWS
Trigger: GCTCCAGGAGCTCGACCAGCAAGAGCAACAGGAGCT...ACAGCTGCCTACAGATGAGGCAGGATGCCGGTGGTCACTGGAGCTATGAAGAGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR GCA 90 bp CACGGCGCTGTTTACATCTCTAAGCCTACCCACGTCCAGACCCCTCAGTGCCTTTCTGGCTCCCAGCTGTaGAGCTCTCGAAGGATCAAG +
Preference number: 4 (lower is better)
Translates to: HGAVYISKPTHVQTPQCLSGSQL*SSRRIK
Trigger: CTTGATCCTTCGAGAGCTGCACAGCTGGGAGCCAGA...AAGGCACTGAGGGGTCTGGACGTGGGTAGGCTTAGAGATGTAAACAGCGCCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR GCA 90 bp TGCAACAGGGCACAGGATTGGGCAGCACCCTTGGGCTTCTCACCATTTACTGGGCCAGCAGGTTTTCCATaGCAGCCTCTGGCTCATCAC +
Preference number: 4 (lower is better)
Translates to: CNRAQDWAAPLGFSPFTGPAGFP*QPLAHH
Trigger: GTGATGAGCCAGAGGCTGGCATGGAAAACCTGCTGG...CCCAGTAAATGGTGAGAAGCCCAAGGGTGCTGCCCAATCCTGTGCCCTGTTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR CCA 90 bp CAAATGGGAAACCCAGCAAGTCATCCAGAGACAGGCTCACAGGCTCGGATGGCAGACCACGCACCTGTCTaGGTCCAGGAGAAAAGCACG +
Preference number: 4 (lower is better)
Translates to: QMGNPASHPETGSQARMADHAPV*VQEKST
Trigger: CGTGCTTTTCTCCTGGACCCAGACAGGTGCGTGGTC...TGCCATCCGAGCCTGTGAGCCTGTCTCTGGATGACTTGCTGGGTTTCCCATTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR CAA 72 bp GGCAGCACCCTTGGGCTTCTCACCATTTACTGGGCATaGACCCTAGAACCCTGCGCCAACACTGGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: GSTLGLLTIYWA*TLEPCANTGKG
Trigger: ACCTTTGCCAGTGTTGGCGCAGGGTTCTAGGGTCAATGCCCAGTAAATGGTGAGAAGCCCAAGGGTGCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR TCA 90 bp GCTCTTCATAGCTCCAGTGACCACCGGCATCCTGCCTCATCTGTAGGCAGCTGTCCGTTGCTTGTCTGGTaGCAAGTACTGCAGGTCAAC +
Preference number: 4 (lower is better)
Translates to: ALHSSSDHRHPASSVGSCPLLVW*QVLQVN
Trigger: GTTGACCTGCAGTACTTGTCACCAGACAAGCAACGG...ACAGCTGCCTACAGATGAGGCAGGATGCCGGTGGTCACTGGAGCTATGAAGAGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR GCA 90 bp GGGCAGCACCCTTGGGCTTCTCACCATTTACTGGGCATTGACCCTAGAACCCTGTCTGGTGACAAGTACTaGAGGTCAACAGGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: GQHPWASHHLLGIDPRTLSGDKY*RSTGSW
Trigger: CCAGCTGCCTGTTGACCTGCAGTACTTGTCACCAGA...CAGGGTTCTAGGGTCAATGCCCAGTAAATGGTGAGAAGCCCAAGGGTGCTGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR GCA 90 bp TGGCTTCCCAGGGCTTGCAGTATTTTCAGTCCAGTCCTATCACCAGCTGGGAATCTGCTTCCGACCAGGTaGCGTGGCTGTCAGCAGCAT +
Preference number: 4 (lower is better)
Translates to: WLPRACSIFSPVLSPAGNLLPTR*RGCQQH
Trigger: ATGCTGCTGACAGCCACGGCACCTGGTCGGAAGCAG...ATTCCCAGCTGGTGATAGGACTGGACTGAAAATACTGCAAGCCCTGGGAAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR CAA 72 bp AGGTCTTGGGCAAGGAAAGCAAGAAGACTCCGAAGGTaGGGGCTCACGGCGCTGTTTACATCTCTAAGCCTA +
Preference number: 4 (lower is better)
Translates to: RSWARKARRLRR*GLTALFTSLSL
Trigger: TAGGCTTAGAGATGTAAACAGCGCCGTGAGCCCCAACCTTCGGAGTCTTCTTGCTTTCCTTGCCCAAGACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR CCA 90 bp GGGCAGCACCCTTGGGCTTCTCACCATTTACTGGGCATTGACCCTAGAACCCTGTCACCAATAAGCACCTaGATAAGTTTTTCGCAAGCC +
Preference number: 4 (lower is better)
Translates to: GQHPWASHHLLGIDPRTLSPIST*ISFSQA
Trigger: GGCTTGCGAAAAACTTATCCAGGTGCTTATTGGTGA...CAGGGTTCTAGGGTCAATGCCCAGTAAATGGTGAGAAGCCCAAGGGTGCTGCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR GCA 90 bp AGTGCCTTCAGGAATGAAAACCTAGTTGGCTTCCCAGGGCTTGCAGTATTTTCAACGTCTTCAGGTACCTaGACCTCCAGCAGGTTTTCC +
Preference number: 4 (lower is better)
Translates to: SAFRNENLVGFPGLAVFSTSSGT*TSSRFS
Trigger: GGAAAACCTGCTGGAGGTGCAGGTACCTGAAGACGT...TGAAAATACTGCAAGCCCTGGGAAGCCAACTAGGTTTTCATTCCTGAAGGCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
3UTR CAA 72 bp TGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTaGAAAGGCAACCGAGACTTGAAAAAGCTAACCAAG +
Preference number: 4 (lower is better)
Translates to: CRPGWPQTQKSA*KGNRDLKKLTK
Trigger: CTTGGTTAGCTTTTTCAAGTCTCGGTTGCCTTTCAAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR CCA 90 bp GACGAGGATCCAAGTGTAGTCTGTCTTTTAAGGTCTTGGGCAAGGAAAGCAAGATTCCATGCCAGCCTCTaGCTCATCACCAATAAGCAC +
Preference number: 4 (lower is better)
Translates to: DEDPSVVCLLRSWARKARFHASL*LITNKH
Trigger: GTGCTTATTGGTGATGAGCCAGAGGCTGGCATGGAA...TCTTGCTTTCCTTGCCCAAGACCTTAAAAGACAGACTACACTTGGATCCTCGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 90 bp GCCAACAGCGTGCGGCCCGAGCCCGCACCAGTCAGCGCCAGCACGTaGTGCGCCGCGGCCGCCTGCAGGTCGGCTCGCGCTCCGAGCACC +
Preference number: 5 (lower is better)
Translates to: ANSVRPEPAPVSAST*CAAAACRSARAPST
Trigger: GGTGCTCGGAGCGCGAGCCGACCTGCAGGCGGCCGCGGCGCAGCACGTGCTGGCGCTGACTGGTGCGGGCTCGGGCCGCACGCTGTTGGC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 90 bp AACAGCGTGCGGCCCGAGCCCGCACCAGTCAGCGCCAGCACGTGCTaGGCCGCGGCCGCCTGCAGGTCGGCTCGCGCTCCGAGCACCAGG +
Preference number: 5 (lower is better)
Translates to: NSVRPEPAPVSASTC*AAAACRSARAPSTR
Trigger: CCTGGTGCTCGGAGCGCGAGCCGACCTGCAGGCGGCCGCGGCGCAGCACGTGCTGGCGCTGACTGGTGCGGGCTCGGGCCGCACGCTGTT
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 90 bp GAGCCCGCACCAGTCAGCGCCAGCACGTGCTGCGCCGCGGCCGCCTaGAGGTCGGCTCGCGCTCCGAGCACCAGGAAGGGCAGCAGTTCC +
Preference number: 5 (lower is better)
Translates to: EPAPVSASTCCAAAA*RSARAPSTRKGSSS
Trigger: GGAACTGCTGCCCTTCCTGGTGCTCGGAGCGCGAGCCGACCTGCAGGCGGCCGCGGCGCAGCACGTGCTGGCGCTGACTGGTGCGGGCTC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS TCA 90 bp CTCAGGTTGGCCAGCACTGCAGCCGCCTCTTCAGCCCAGGGCCACTaGGGGTCCAACACGCAGCGCAGCAGGCGGGCGGGCAGCTCCGGG +
Preference number: 5 (lower is better)
Translates to: LRLASTAAASSAQGH*GSNTQRSRRAGSSG
Trigger: CCCGGAGCTGCCCGCCCGCCTGCTGCGCTGCGTGTTGGACCCTCAGTGGCCCTGGGCTGAAGAGGCGGCTGCAGTGCTGGCCAACCTGAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 90 bp GGTCGACCAAGGCCCGCAACAACTCTGGCTGTCCGGCCAACAGCGTaGGGCCCGAGCCCGCACCAGTCAGCGCCAGCACGTGCTGCGCCG +
Preference number: 5 (lower is better)
Translates to: GRPRPATTLAVRPTA*GPSPHQSAPARAAP
Trigger: CGGCGCAGCACGTGCTGGCGCTGACTGGTGCGGGCTCGGGCCGCACGCTGTTGGCCGGACAGCCAGAGTTGTTGCGGGCCTTGGTCGACC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 90 bp CAGCGCAGCAGGCGGGCGGGCAGCTCCGGGTCAGCCGCCAGCAGCTaGCAGTGCACATTGGGATCAGCAGCCAAGTTCACGAGCGCGCGG +
Preference number: 5 (lower is better)
Translates to: QRSRRAGSSGSAASS*QCTLGSAAKFTSAR
Trigger: CCGCGCGCTCGTGAACTTGGCTGCTGATCCCAATGTGCACTGGCAGCTGCTGGCGGCTGACCCGGAGCTGCCCGCCCGCCTGCTGCGCTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 90 bp AGCAGGCGGGCGGGCAGCTCCGGGTCAGCCGCCAGCAGCTGCCAGTaGACATTGGGATCAGCAGCCAAGTTCACGAGCGCGCGGGAGGCA +
Preference number: 5 (lower is better)
Translates to: SRRAGSSGSAASSCQ*TLGSAAKFTSAREA
Trigger: TGCCTCCCGCGCGCTCGTGAACTTGGCTGCTGATCCCAATGTGCACTGGCAGCTGCTGGCGGCTGACCCGGAGCTGCCCGCCCGCCTGCT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CCA 90 bp AGCAGCCAAGTTCACGAGCGCGCGGGAGGCATCGCGGGAAGGAGCTaGGGCCGGGGCCACCGCAAGGTCGACCAAGGCCCGCAACAACTC +
Preference number: 5 (lower is better)
Translates to: SSQVHERAGGIAGRS*GRGHRKVDQGPQQL
Trigger: GAGTTGTTGCGGGCCTTGGTCGACCTTGCGGTGGCCCCGGCCCCAGCTCCTTCCCGCGATGCCTCCCGCGCGCTCGTGAACTTGGCTGCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS TCA 90 bp AATGCAGGGGTGCGGCCGCGTTGTAGCTCGGCGTGCACAGCGCGTTaGCAAGTCGCTCCAGACCCAACCGCTCCGGCTCAGCGGCCATCA +
Preference number: 5 (lower is better)
Translates to: NAGVRPRCSSACTAR*QVAPDPTAPAQRPS
Trigger: TGATGGCCGCTGAGCCGGAGCGGTTGGGTCTGGAGCGACTTGTCAACGCGCTGTGCACGCCGAGCTACAACGCGGCCGCACCCCTGCATT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 90 bp CTGCTGGCTAAGGTTGGAGAGCAGCGGCCCCAGGTAATGCAGGGGTaGGGCCGCGTTGTAGCTCGGCGTGCACAGCGCGTTGACAAGTCG +
Preference number: 5 (lower is better)
Translates to: LLAKVGEQRPQVMQG*GRVVARRAQRVDKS
Trigger: CGACTTGTCAACGCGCTGTGCACGCCGAGCTACAACGCGGCCGCACCCCTGCATTACCTGGGGCCGCTGCTCTCCAACCTTAGCCAGCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CCA 90 bp GCTTCTCCATTAACGCAGCACACGGAGCCGGCTCGCGACTCAGGTTaGCCAGCACTGCAGCCGCCTCTTCAGCCCAGGGCCACTGAGGGT +
Preference number: 5 (lower is better)
Translates to: ASPLTQHTEPARDSG*PALQPPLQPRATEG
Trigger: ACCCTCAGTGGCCCTGGGCTGAAGAGGCGGCTGCAGTGCTGGCCAACCTGAGTCGCGAGCCGGCTCCGTGTGCTGCGTTAATGGAGAAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CCA 90 bp AGTGTTCCCACCACCCCGCCCCTGCGCACCGAAGAATCTGTGTACTaGGTAAGAGGCAGCAGCCGTTGGACCACGCACCTGTCTGGGTCC +
Preference number: 5 (lower is better)
Translates to: SVPTTPPLRTEESVY*VRGSSRWTTHLSGS
Trigger: GGACCCAGACAGGTGCGTGGTCCAACGGCTGCTGCCTCTTACCCAGTACACAGATTCTTCGGTGCGCAGGGGCGGGGTGGTGGGAACACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR CAA 90 bp GAGGCAGCAAATGGGAAACCCAGCAAGTCATCCAGAGACAGGCTCACAGGCTCGGGCGTGCACAGCGCGTaGACAAGTCGCTCCAGACCC +
Preference number: 5 (lower is better)
Translates to: EAANGKPSKSSRDRLTGSGVHSA*TSRSRP
Trigger: GGGTCTGGAGCGACTTGTCAACGCGCTGTGCACGCC...CGAGCCTGTGAGCCTGTCTCTGGATGACTTGCTGGGTTTCCCATTTGCTGCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 90 bp AAGGATCAAGTAGGCACCCTGGTCCCGTACCTGCTTCCGACCAGGTaGCGTGGCTGTCAGCAGCATGACGGCTTCGATGAGCATCTTCCG +
Preference number: 5 (lower is better)
Translates to: KDQVGTLVPYLLPTR*RGCQQHDGFDEHLP
Trigger: CGGAAGATGCTCATCGAAGCCGTCATGCTGCTGACAGCCACGGCACCTGGTCGGAAGCAGGTACGGGACCAGGGTGCCTACTTGATCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CCA 90 bp TGTGTACTGGGTAAGAGGCAGCAGCCGTTGGACCACGCACCTGTCTaGGTCCAGGAGAAAAGCACGCACCTCCGCCTGCTGGCTAAGGTT +
Preference number: 5 (lower is better)
Translates to: CVLGKRQQPLDHAPV*VQEKSTHLRLLAKV
Trigger: AACCTTAGCCAGCAGGCGGAGGTGCGTGCTTTTCTCCTGGACCCAGACAGGTGCGTGGTCCAACGGCTGCTGCCTCTTACCCAGTACACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CCA 90 bp CTGCGCACCGAAGAATCTGTGTACTGGGTAAGAGGCAGCAGCCGTTaGACCACGCACCTGTCTGGGTCCAGGAGAAAAGCACGCACCTCC +
Preference number: 5 (lower is better)
Translates to: LRTEESVYWVRGSSR*TTHLSGSRRKARTS
Trigger: GGAGGTGCGTGCTTTTCTCCTGGACCCAGACAGGTGCGTGGTCCAACGGCTGCTGCCTCTTACCCAGTACACAGATTCTTCGGTGCGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS-3UTR CAA 90 bp CAGAGAAACGGAGGCAGCAAATGGGAAACCCAGCAAGTCATCCAGAGACAGGCTAAGAGGCAGCAGCCGTaGGACCACGCACCTGTCTGG +
Preference number: 5 (lower is better)
Translates to: QRNGGSKWETQQVIQRQAKRQQP*DHAPVW
Trigger: CCAGACAGGTGCGTGGTCCAACGGCTGCTGCCTCTT...AGCCTGTCTCTGGATGACTTGCTGGGTTTCCCATTTGCTGCCTCCGTTTCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS TCA 90 bp GAGCATCTTCCGGATGTCAGCGTCCGGCTCCCGTTGCTTGTCTGGTaGCAAGTACTGCAGGTCAACAGGCAGCTGGTCCATTTCTTCCTC +
Preference number: 5 (lower is better)
Translates to: EHLPDVSVRLPLLVW*QVLQVNRQLVHFFL
Trigger: GAGGAAGAAATGGACCAGCTGCCTGTTGACCTGCAGTACTTGTCACCAGACAAGCAACGGGAGCCGGACGCTGACATCCGGAAGATGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CCA 90 bp AAGCACCTGGATAAGTTTTTCGCAAGCCATCCGCACATCGGGCTCTaGCTCCCAGCTGTGCAGCTCTCGAAGGATCAAGTAGGCACCCTG +
Preference number: 5 (lower is better)
Translates to: KHLDKFFASHPHIGL*LPAVQLSKDQVGTL
Trigger: CAGGGTGCCTACTTGATCCTTCGAGAGCTGCACAGCTGGGAGCCAGAGCCCGATGTGCGGATGGCTTGCGAAAAACTTATCCAGGTGCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 90 bp CGGATGTCAGCGTCCGGCTCCCGTTGCTTGTCTGGTGACAAGTACTaGAGGTCAACAGGCAGCTGGTCCATTTCTTCCTCGGAAAACTCT +
Preference number: 5 (lower is better)
Translates to: RMSASGSRCLSGDKY*RSTGSWSISSSENS
Trigger: AGAGTTTTCCGAGGAAGAAATGGACCAGCTGCCTGTTGACCTGCAGTACTTGTCACCAGACAAGCAACGGGAGCCGGACGCTGACATCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 72 bp GTGCGGCCCGAGCCCGCACCAGTCAGCGCCAGCACGTaGTGCGCCGCGGCCGCCTGCAGGTCGGCTCGCGCT +
Preference number: 6 (lower is better)
Translates to: VRPEPAPVSAST*CAAAACRSARA
Trigger: AGCGCGAGCCGACCTGCAGGCGGCCGCGGCGCAGCACGTGCTGGCGCTGACTGGTGCGGGCTCGGGCCGCAC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 72 bp CCAGTCAGCGCCAGCACGTGCTGCGCCGCGGCCGCCTaGAGGTCGGCTCGCGCTCCGAGCACCAGGAAGGGC +
Preference number: 6 (lower is better)
Translates to: PVSASTCCAAAA*RSARAPSTRKG
Trigger: GCCCTTCCTGGTGCTCGGAGCGCGAGCCGACCTGCAGGCGGCCGCGGCGCAGCACGTGCTGGCGCTGACTGG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CCA 72 bp GTTCACGAGCGCGCGGGAGGCATCGCGGGAAGGAGCTaGGGCCGGGGCCACCGCAAGGTCGACCAAGGCCCG +
Preference number: 6 (lower is better)
Translates to: VHERAGGIAGRS*GRGHRKVDQGP
Trigger: CGGGCCTTGGTCGACCTTGCGGTGGCCCCGGCCCCAGCTCCTTCCCGCGATGCCTCCCGCGCGCTCGTGAAC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CAA 90 bp CGGGCGGGCAGCTCCGGGTCAGCCGCCAGCAGCTGCCAGTGCACATaGGGATCAGCAGCCAAGTTCACGAGCGCGCGGGAGGCATCGCGG +
Preference number: 6 (lower is better)
Translates to: RAGSSGSAASSCQCT*GSAAKFTSAREASR
Trigger: CCGCGATGCCTCCCGCGCGCTCGTGAACTTGGCTGCTGATCCCAATGTGCACTGGCAGCTGCTGGCGGCTGACCCGGAGCTGCCCGCCCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 72 bp AGGCCCGCAACAACTCTGGCTGTCCGGCCAACAGCGTaGGGCCCGAGCCCGCACCAGTCAGCGCCAGCACGT +
Preference number: 6 (lower is better)
Translates to: RPATTLAVRPTA*GPSPHQSAPAR
Trigger: ACGTGCTGGCGCTGACTGGTGCGGGCTCGGGCCGCACGCTGTTGGCCGGACAGCCAGAGTTGTTGCGGGCCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 72 bp ACACGGAGCCGGCTCGCGACTCAGGTTGGCCAGCACTaGAGCCGCCTCTTCAGCCCAGGGCCACTGAGGGTC +
Preference number: 6 (lower is better)
Translates to: TRSRLATQVGQH*SRLFSPGPLRV
Trigger: GACCCTCAGTGGCCCTGGGCTGAAGAGGCGGCTGCAGTGCTGGCCAACCTGAGTCGCGAGCCGGCTCCGTGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS TCA 72 bp GTGCGGCCGCGTTGTAGCTCGGCGTGCACAGCGCGTTaGCAAGTCGCTCCAGACCCAACCGCTCCGGCTCAG +
Preference number: 6 (lower is better)
Translates to: VRPRCSSACTAR*QVAPDPTAPAQ
Trigger: CTGAGCCGGAGCGGTTGGGTCTGGAGCGACTTGTCAACGCGCTGTGCACGCCGAGCTACAACGCGGCCGCAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 72 bp GCGGGCAGCTCCGGGTCAGCCGCCAGCAGCTGCCAGTaGACATTGGGATCAGCAGCCAAGTTCACGAGCGCG +
Preference number: 6 (lower is better)
Translates to: AGSSGSAASSCQ*TLGSAAKFTSA
Trigger: CGCGCTCGTGAACTTGGCTGCTGATCCCAATGTGCACTGGCAGCTGCTGGCGGCTGACCCGGAGCTGCCCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 72 bp AGGCGGGCGGGCAGCTCCGGGTCAGCCGCCAGCAGCTaGCAGTGCACATTGGGATCAGCAGCCAAGTTCACG +
Preference number: 6 (lower is better)
Translates to: RRAGSSGSAASS*QCTLGSAAKFT
Trigger: CGTGAACTTGGCTGCTGATCCCAATGTGCACTGGCAGCTGCTGGCGGCTGACCCGGAGCTGCCCGCCCGCCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CCA 72 bp TTAACGCAGCACACGGAGCCGGCTCGCGACTCAGGTTaGCCAGCACTGCAGCCGCCTCTTCAGCCCAGGGCC +
Preference number: 6 (lower is better)
Translates to: LTQHTEPARDSG*PALQPPLQPRA
Trigger: GGCCCTGGGCTGAAGAGGCGGCTGCAGTGCTGGCCAACCTGAGTCGCGAGCCGGCTCCGTGTGCTGCGTTAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 72 bp AAGGTTGGAGAGCAGCGGCCCCAGGTAATGCAGGGGTaGGGCCGCGTTGTAGCTCGGCGTGCACAGCGCGTT +
Preference number: 6 (lower is better)
Translates to: KVGEQRPQVMQG*GRVVARRAQRV
Trigger: AACGCGCTGTGCACGCCGAGCTACAACGCGGCCGCACCCCTGCATTACCTGGGGCCGCTGCTCTCCAACCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CAA 72 bp ATTAACGCAGCACACGGAGCCGGCTCGCGACTCAGGTaGGCCAGCACTGCAGCCGCCTCTTCAGCCCAGGGC +
Preference number: 6 (lower is better)
Translates to: INAAHGAGSRLR*ASTAAASSAQG
Trigger: GCCCTGGGCTGAAGAGGCGGCTGCAGTGCTGGCCAACCTGAGTCGCGAGCCGGCTCCGTGTGCTGCGTTAAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 72 bp AGCAGTTCCACCGCCTCCGTGTCCGCGCCAGCCTCCTaGTCTAGCAACCCTCGCTCACCAGAGAACCCCGAA +
Preference number: 6 (lower is better)
Translates to: SSSTASVSAPAS*SSNPRSPENPE
Trigger: TTCGGGGTTCTCTGGTGAGCGAGGGTTGCTAGAGCAGGAGGCTGGCGCGGACACGGAGGCGGTGGAACTGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS GCA 72 bp GTAGGCACCCTGGTCCCGTACCTGCTTCCGACCAGGTaGCGTGGCTGTCAGCAGCATGACGGCTTCGATGAG +
Preference number: 6 (lower is better)
Translates to: VGTLVPYLLPTR*RGCQQHDGFDE
Trigger: CTCATCGAAGCCGTCATGCTGCTGACAGCCACGGCACCTGGTCGGAAGCAGGTACGGGACCAGGGTGCCTAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CCA 72 bp ACCACCCCGCCCCTGCGCACCGAAGAATCTGTGTACTaGGTAAGAGGCAGCAGCCGTTGGACCACGCACCTG +
Preference number: 6 (lower is better)
Translates to: TTPPLRTEESVY*VRGSSRWTTHL
Trigger: CAGGTGCGTGGTCCAACGGCTGCTGCCTCTTACCCAGTACACAGATTCTTCGGTGCGCAGGGGCGGGGTGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CAA 90 bp CCTGCGCACCGAAGAATCTGTGTACTGGGTAAGAGGCAGCAGCCGTaGGACCACGCACCTGTCTGGGTCCAGGAGAAAAGCACGCACCTC +
Preference number: 6 (lower is better)
Translates to: PAHRRICVLGKRQQP*DHAPVWVQEKSTHL
Trigger: GAGGTGCGTGCTTTTCTCCTGGACCCAGACAGGTGCGTGGTCCAACGGCTGCTGCCTCTTACCCAGTACACAGATTCTTCGGTGCGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS TCA 72 bp CCGGATGTCAGCGTCCGGCTCCCGTTGCTTGTCTGGTaGCAAGTACTGCAGGTCAACAGGCAGCTGGTCCAT +
Preference number: 6 (lower is better)
Translates to: PDVSVRLPLLVW*QVLQVNRQLVH
Trigger: ATGGACCAGCTGCCTGTTGACCTGCAGTACTTGTCACCAGACAAGCAACGGGAGCCGGACGCTGACATCCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CCA 72 bp GAAGAATCTGTGTACTGGGTAAGAGGCAGCAGCCGTTaGACCACGCACCTGTCTGGGTCCAGGAGAAAAGCA +
Preference number: 6 (lower is better)
Translates to: EESVYWVRGSSR*TTHLSGSRRKA
Trigger: TGCTTTTCTCCTGGACCCAGACAGGTGCGTGGTCCAACGGCTGCTGCCTCTTACCCAGTACACAGATTCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CCA 72 bp GATAAGTTTTTCGCAAGCCATCCGCACATCGGGCTCTaGCTCCCAGCTGTGCAGCTCTCGAAGGATCAAGTA +
Preference number: 6 (lower is better)
Translates to: DKFFASHPHIGL*LPAVQLSKDQV
Trigger: TACTTGATCCTTCGAGAGCTGCACAGCTGGGAGCCAGAGCCCGATGTGCGGATGGCTTGCGAAAAACTTATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8
CDS CCA 72 bp TTGTCTGGTGACAAGTACTGCAGGTCAACAGGCAGCTaGTCCATTTCTTCCTCGGAAAACTCTTCAGGCCCA +
Preference number: 6 (lower is better)
Translates to: LSGDKYCRSTGS*SISSSENSSGP
Trigger: TGGGCCTGAAGAGTTTTCCGAGGAAGAAATGGACCAGCTGCCTGTTGACCTGCAGTACTTGTCACCAGACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023213.8