RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HEXB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021665

Ensembl transcript IDs: ENSMUST00000022169.10

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CGCGGGAACATCTGCACCGAGCGCGGGAAGGGCCATAGCGCAGGTTaGAGTCGGGCCGGGGCCACTAGGGCCAGCGACACTAGCGACACC +
Preference number: 5 (lower is better)
Translates to: RGNICTERGKGHSAG*SRAGATRASDTSDT
Trigger: GGTGTCGCTAGTGTCGCTGGCCCTAGTGGCCCCGGCCCGACTGCAACCTGCGCTATGGCCCTTCCCGCGCTCGGTGCAGATGTTCCCGCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS TCA 90 bp GCGAGCAGGAAGGGCCCGCTGTGGAATTGGGACTGTGGTCGATGCTaGAGTCCTCCGCGGAGATGTACAACAGCCGCGGGAACATCTGCA +
Preference number: 5 (lower is better)
Translates to: ASRKGPLWNWDCGRC*SPPRRCTTAAGTSA
Trigger: TGCAGATGTTCCCGCGGCTGTTGTACATCTCCGCGGAGGACTTCAGCATCGACCACAGTCCCAATTCCACAGCGGGCCCTTCCTGCTCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS TCA 90 bp CTTTGCCCCAAGACTGTGTATGGCCAGGGGTATCAAATTCTGGTATaGCTCGAATCCCTCGGAGCCGGGCGTACTCCAGCACCATCCGGA +
Preference number: 5 (lower is better)
Translates to: LCPKTVYGQGYQILV*LESLGAGRTPAPSG
Trigger: TCCGGATGGTGCTGGAGTACGCCCGGCTCCGAGGGATTCGAGTCATACCAGAATTTGATACCCCTGGCCATACACAGTCTTGGGGCAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS TCA 90 bp AGTTACAGTATCCAGTATAGAGAGGTTGTGCAGCTATTCCACGGCTaGCCATTCTGCAGCGGTGCACGGCCAGTCGTTTGTAGGCATTTT +
Preference number: 5 (lower is better)
Translates to: SYSIQYREVVQLFHG*PFCSGARPVVCRHF
Trigger: AAAATGCCTACAAACGACTGGCCGTGCACCGCTGCAGAATGGTCAGCCGTGGAATAGCTGCACAACCTCTCTATACTGGATACTGTAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS GCA 90 bp CTATATTTTATTCTCATAGTTACAGTATCCAGTATAGAGAGGTTGTaGAGCTATTCCACGGCTGACCATTCTGCAGCGGTGCACGGCCAG +
Preference number: 5 (lower is better)
Translates to: LYFILIVTVSSIERL*SYSTADHSAAVHGQ
Trigger: CTGGCCGTGCACCGCTGCAGAATGGTCAGCCGTGGAATAGCTGCACAACCTCTCTATACTGGATACTGTAACTATGAGAATAAAATATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS TCA 90 bp GCTGCCAAAGCCCTTTCTCTTCATGAAACCTTGGATGTTTGGATTTaGTGCCCAACATTGAAATTCTACTTCATCTCCTCCCAAGTGGAT +
Preference number: 5 (lower is better)
Translates to: AAKALSLHETLDVWI*CPTLKFYFISSQVD
Trigger: ATCCACTTGGGAGGAGATGAAGTAGAATTTCAATGTTGGGCATCAAATCCAAACATCCAAGGTTTCATGAAGAGAAAGGGCTTTGGCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS GCA 90 bp TTAGCTCATATGAATAATGCTCACTCTTCCACACTTCGACTACTGTaGCCGGCTGAAGCTCCACCTTATCATCAAAAACTTCTTGCCAAA +
Preference number: 5 (lower is better)
Translates to: LAHMNNAHSSTLRLL*PAEAPPYHQKLLAK
Trigger: TTTGGCAAGAAGTTTTTGATGATAAGGTGGAGCTTCAGCCGGGCACAGTAGTCGAAGTGTGGAAGAGTGAGCATTATTCATATGAGCTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS GCA 72 bp GCCACTAGGGCCAGCGACACTAGCGACACCAGCGCCTaGAGCAGCAGCAGCCCGGGGGCGCTACGCGGGGAC +
Preference number: 6 (lower is better)
Translates to: ATRASDTSDTSA*SSSSPGALRGD
Trigger: GTCCCCGCGTAGCGCCCCCGGGCTGCTGCTGCTGCAGGCGCTGGTGTCGCTAGTGTCGCTGGCCCTAGTGGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS GCA 72 bp ATCTGCACCGAGCGCGGGAAGGGCCATAGCGCAGGTTaGAGTCGGGCCGGGGCCACTAGGGCCAGCGACACT +
Preference number: 6 (lower is better)
Translates to: ICTERGKGHSAG*SRAGATRASDT
Trigger: AGTGTCGCTGGCCCTAGTGGCCCCGGCCCGACTGCAACCTGCGCTATGGCCCTTCCCGCGCTCGGTGCAGAT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS TCA 72 bp AAGGGCCCGCTGTGGAATTGGGACTGTGGTCGATGCTaGAGTCCTCCGCGGAGATGTACAACAGCCGCGGGA +
Preference number: 6 (lower is better)
Translates to: KGPLWNWDCGRC*SPPRRCTTAAG
Trigger: TCCCGCGGCTGTTGTACATCTCCGCGGAGGACTTCAGCATCGACCACAGTCCCAATTCCACAGCGGGCCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS CCA 72 bp GCCCCAAGACTGTGTATGGCCAGGGGTATCAAATTCTaGTATGACTCGAATCCCTCGGAGCCGGGCGTACTC +
Preference number: 6 (lower is better)
Translates to: APRLCMARGIKF*YDSNPSEPGVL
Trigger: GAGTACGCCCGGCTCCGAGGGATTCGAGTCATACCAGAATTTGATACCCCTGGCCATACACAGTCTTGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS TCA 72 bp AAGACTGTGTATGGCCAGGGGTATCAAATTCTGGTATaGCTCGAATCCCTCGGAGCCGGGCGTACTCCAGCA +
Preference number: 6 (lower is better)
Translates to: KTVYGQGYQILV*LESLGAGRTPA
Trigger: TGCTGGAGTACGCCCGGCTCCGAGGGATTCGAGTCATACCAGAATTTGATACCCCTGGCCATACACAGTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS TCA 72 bp ATCCAGTATAGAGAGGTTGTGCAGCTATTCCACGGCTaGCCATTCTGCAGCGGTGCACGGCCAGTCGTTTGT +
Preference number: 6 (lower is better)
Translates to: IQYREVVQLFHG*PFCSGARPVVC
Trigger: ACAAACGACTGGCCGTGCACCGCTGCAGAATGGTCAGCCGTGGAATAGCTGCACAACCTCTCTATACTGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS CCA 72 bp GAGCCGGGCGTACTCCAGCACCATCCGGACATCGTTTaGTGTATAGACATGAGACAAAGAGTAGCTTCCCTT +
Preference number: 6 (lower is better)
Translates to: EPGVLQHHPDIV*CIDMRQRVASL
Trigger: AAGGGAAGCTACTCTTTGTCTCATGTCTATACACCAAACGATGTCCGGATGGTGCTGGAGTACGCCCGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS CAA 72 bp AACGTCTCTAAACCTCGTAACGCTCCCCAAACGCTGTaGGCCTTGAGGACGGCTACTGGTTCTTGTACAAGC +
Preference number: 6 (lower is better)
Translates to: NVSKPRNAPQTL*ALRTATGSCTS
Trigger: GCTTGTACAAGAACCAGTAGCCGTCCTCAAGGCCAACAGCGTTTGGGGAGCGTTACGAGGTTTAGAGACGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS CAA 90 bp GAATCCCTCGGAGCCGGGCGTACTCCAGCACCATCCGGACATCGTTaGGTGTATAGACATGAGACAAAGAGTAGCTTCCCTTATTGCTTA +
Preference number: 6 (lower is better)
Translates to: ESLGAGRTPAPSGHR*VYRHETKSSFPYCL
Trigger: TAAGCAATAAGGGAAGCTACTCTTTGTCTCATGTCTATACACCAAACGATGTCCGGATGGTGCTGGAGTACGCCCGGCTCCGAGGGATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS TCA 72 bp CTAAACCTCGTAACGCTCCCCAAACGCTGTTGGCCTTaGGGACGGCTACTGGTTCTTGTACAAGCAGAGAAT +
Preference number: 6 (lower is better)
Translates to: LNLVTLPKRCWP*GRLLVLVQAEN
Trigger: ATTCTCTGCTTGTACAAGAACCAGTAGCCGTCCTCAAGGCCAACAGCGTTTGGGGAGCGTTACGAGGTTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS CAA 72 bp TCTAAACCTCGTAACGCTCCCCAAACGCTGTTGGCCTaGAGGACGGCTACTGGTTCTTGTACAAGCAGAGAA +
Preference number: 6 (lower is better)
Translates to: SKPRNAPQTLLA*RTATGSCTSRE
Trigger: TTCTCTGCTTGTACAAGAACCAGTAGCCGTCCTCAAGGCCAACAGCGTTTGGGGAGCGTTACGAGGTTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS TCA 72 bp CAACTTTGTAGTAGTTTTTCCAGTCTTGCCCATAGCTaGTCAGGTCTAAGTACCAAGGAGCAGAAAGGATGG +
Preference number: 6 (lower is better)
Translates to: QLCSSFSSLAHS*SGLSTKEQKGW
Trigger: CCATCCTTTCTGCTCCTTGGTACTTAGACCTGATCAGCTATGGGCAAGACTGGAAAAACTACTACAAAGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS GCA 72 bp ATGAATAATGCTCACTCTTCCACACTTCGACTACTGTaGCCGGCTGAAGCTCCACCTTATCATCAAAAACTT +
Preference number: 6 (lower is better)
Translates to: MNNAHSSTLRLL*PAEAPPYHQKL
Trigger: AAGTTTTTGATGATAAGGTGGAGCTTCAGCCGGGCACAGTAGTCGAAGTGTGGAAGAGTGAGCATTATTCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10
CDS CAA 72 bp TTTATTCTCATAGTTACAGTATCCAGTATAGAGAGGTaGTGCAGCTATTCCACGGCTGACCATTCTGCAGCG +
Preference number: 6 (lower is better)
Translates to: FILIVTVSSIER*CSYSTADHSAA
Trigger: CGCTGCAGAATGGTCAGCCGTGGAATAGCTGCACAACCTCTCTATACTGGATACTGTAACTATGAGAATAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022169.10