Pregenerated sensors for HESX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040726

Ensembl transcript IDs: ENSMUST00000035433.10, ENSMUST00000224331.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GAAATGAAGTCTCACTGGGAAGATCTGGGGCATGTAGGGGTGGGTTaGCACCTTTCTCTGAGTCACCGCAGGTGTCTGTCCAGGGTCTGT	+
Preference number: 5 (lower is better) Translates to: EMKSHWEDLGHVGVG*HLSLSHRRCLSRVC Trigger: ACAGACCCTGGACAGACACCTGCGGTGACTCAGAGAAAGGTGGCAACCCACCCCTACATGCCCCAGATCTTCCCAGTGAGACTTCATTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035433.10 ENSMUST00000224331.2
CDS CCA 90 bp	GACATTTTCCAATACTTCGACCTGGTTCTGGGTGAAAGCGGTTCTTaGCCTTCGTCCTCGGTACCAACTCAATTCTCTTTTCAAAGAGCG	+
Preference number: 5 (lower is better) Translates to: DIFQYFDLVLGESGS*PSSSVPTQFSFQRA Trigger: CGCTCTTTGAAAAGAGAATTGAGTTGGTACCGAGGACGAAGGCCAAGAACCGCTTTCACCCAGAACCAGGTCGAAGTATTGGAAAATGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035433.10 ENSMUST00000224331.2
CDS GCA 72 bp	AAATGCTCTCAATTGAGAAGGAGCAGGGCGCGGGCTTaGTTTCCCGGAGCTGAGCACCTTCCCGAAGGCTGG	+
Preference number: 6 (lower is better) Translates to: KCSQLRRSRARA*FPGAEHLPEGW Trigger: CCAGCCTTCGGGAAGGTGCTCAGCTCCGGGAAAGCAAGCCCGCGCCCTGCTCCTTCTCAATTGAGAGCATTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035433.10 ENSMUST00000224331.2
CDS CAA 90 bp	GGAAATGAAGTCTCACTGGGAAGATCTGGGGCATGTAGGGGTGGGTaGCCACCTTTCTCTGAGTCACCGCAGGTGTCTGTCCAGGGTCTG	+
Preference number: 6 (lower is better) Translates to: GNEVSLGRSGACRGG*PPFSESPQVSVQGL Trigger: CAGACCCTGGACAGACACCTGCGGTGACTCAGAGAAAGGTGGCAACCCACCCCTACATGCCCCAGATCTTCCCAGTGAGACTTCATTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035433.10 ENSMUST00000224331.2
CDS CCA 72 bp	TTGGATGATCCACTGGACAAGGAAATGAAGTCTCACTaGGAAGATCTGGGGCATGTAGGGGTGGGTTGCCAC	+
Preference number: 6 (lower is better) Translates to: LDDPLDKEMKSH*EDLGHVGVGCH Trigger: GTGGCAACCCACCCCTACATGCCCCAGATCTTCCCAGTGAGACTTCATTTCCTTGTCCAGTGGATCATCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035433.10 ENSMUST00000224331.2
CDS CCA 72 bp	CAATACTTCGACCTGGTTCTGGGTGAAAGCGGTTCTTaGCCTTCGTCCTCGGTACCAACTCAATTCTCTTTT	+
Preference number: 6 (lower is better) Translates to: QYFDLVLGESGS*PSSSVPTQFSF Trigger: AAAAGAGAATTGAGTTGGTACCGAGGACGAAGGCCAAGAACCGCTTTCACCCAGAACCAGGTCGAAGTATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035433.10 ENSMUST00000224331.2
CDS CCA 72 bp	ACTCTAAAGACATTTTCCAATACTTCGACCTGGTTCTaGGTGAAAGCGGTTCTTGGCCTTCGTCCTCGGTAC	+
Preference number: 6 (lower is better) Translates to: TLKTFSNTSTWF*VKAVLGLRPRY Trigger: GTACCGAGGACGAAGGCCAAGAACCGCTTTCACCCAGAACCAGGTCGAAGTATTGGAAAATGTCTTTAGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035433.10 ENSMUST00000224331.2
CDS TCA 72 bp	TTTTCATATTTCGGAGCCCTTTCTTCTGGCCTTGGATaGTCCACTGGACAAGGAAATGAAGTCTCACTGGGA	+
Preference number: 6 (lower is better) Translates to: FSYFGALSSGLG*STGQGNEVSLG Trigger: TCCCAGTGAGACTTCATTTCCTTGTCCAGTGGATCATCCAAGGCCAGAAGAAAGGGCTCCGAAATATGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035433.10 ENSMUST00000224331.2
CDS CAA 90 bp	AGGCTGAAAAATAATTTTCATATTTCGGAGCCCTTTCTTCTGGCCTaGGATGATCCACTGGACAAGGAAATGAAGTCTCACTGGGAAGAT	+
Preference number: 6 (lower is better) Translates to: RLKNNFHISEPFLLA*DDPLDKEMKSHWED Trigger: ATCTTCCCAGTGAGACTTCATTTCCTTGTCCAGTGGATCATCCAAGGCCAGAAGAAAGGGCTCCGAAATATGAAAATTATTTTTCAGCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035433.10 ENSMUST00000224331.2