Pregenerated sensors for HES7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023781Ensembl transcript IDs: ENSMUST00000024543.3
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCAGTCTGTCGCTCCGCTCTTTACTTACCTGTCTCCCCCAGGGCTTaGGCCGTGGAGAGCAGGCCTAAAGGTGGGAGAAGGGTATGGGCA | + |
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Preference number: 1 (lower is better) Translates to: SVCRSALYLPVSPRA*AVESRPKGGRRVWA Trigger: TGCCCATACCCTTCTCCCACCTTTAGGCCTGCTCTCCACGGCCCAAGCCCTGGGGGAGACAGGTAAGTAAAGAGCGGAGCGACAGACTGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR GCA 90 bp | CCCTGGCTAGGGGACACACCGGGATTTAATAACGATTTTATTCCATaGACTAGGGACTCGGGAAGGGACTGGGACTGGACTAGGGTAGAG | + |
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Preference number: 1 (lower is better) Translates to: PWLGDTPGFNNDFIP*TRDSGRDWDWTRVE Trigger: CTCTACCCTAGTCCAGTCCCAGTCCCTTCCCGAGTCCCTAGTGCATGGAATAAAATCGTTATTAAATCCCGGTGTGTCCCCTAGCCAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR GCA 90 bp | GACTCGGGAAGGGACTGGGACTGGACTAGGGTAGAGAGAGTACAATaGTACACACAGGGAAGTGGGACAGGGAAAAGGGATGGGAAAATA | + |
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Preference number: 1 (lower is better) Translates to: DSGRDWDWTRVERVQ*YTQGSGTGKRDGKI Trigger: TATTTTCCCATCCCTTTTCCCTGTCCCACTTCCCTGTGTGTAGCATTGTACTCTCTCTACCCTAGTCCAGTCCCAGTCCCTTCCCGAGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR CCA 90 bp | ATAGCGCATTGGACTTCTAGTGACGAGAAAGCGATTCAAAGGTTGTaGGTTCGAATCCCACCAGAGTCGGTTTTATTACTCATTTTAATC | + |
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Preference number: 1 (lower is better) Translates to: IAHWTSSDEKAIQRL*VRIPPESVLLLILI Trigger: GATTAAAATGAGTAATAAAACCGACTCTGGTGGGATTCGAACCCACAACCTTTGAATCGCTTTCTCGTCACTAGAAGTCCAATGCGCTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR-3UTR CCA 90 bp | CCGCCCCATCTCCTTGCACACGGACACACACACACTCTCTCTCTCTCACACACAGGTGGGAGAAGGGTATaGGCAAGTAGGCGTGGCGCC | + |
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Preference number: 2 (lower is better) Translates to: PPHLLAHGHTHTLSLSHTGGRRV*ASRRGA Trigger: GGCGCCACGCCTACTTGCCCATACCCTTCTCCCACC...TGTGTGTGAGAGAGAGAGAGTGTGTGTGTGTCCGTGTGCAAGGAGATGGGGCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR-3UTR CCA 90 bp | TATGACGCTCCGCCCCATCTCCTTGCACACGGACACACACACACTCTCTCTCTCGGAAGGGACTGGGACTaGACTAGGGTAGAGAGAGTA | + |
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Preference number: 2 (lower is better) Translates to: YDAPPHLLAHGHTHTLSLGRDWD*TRVERV Trigger: TACTCTCTCTACCCTAGTCCAGTCCCAGTCCCTTCC...GAGAGAGAGAGTGTGTGTGTGTCCGTGTGCAAGGAGATGGGGCGGAGCGTCATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR-3UTR CCA 90 bp | AGACCCACAAATAAAGTTCAGCTCCAACCTCAGTCTGTCGCTCCGCTCTTTACTCCAGGGCTTGGGCCGTaGAGAGCAGGCCTAAAGGTG | + |
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Preference number: 2 (lower is better) Translates to: RPTNKVQLQPQSVAPLFTPGLGP*RAGLKV Trigger: CACCTTTAGGCCTGCTCTCCACGGCCCAAGCCCTGG...AGTAAAGAGCGGAGCGACAGACTGAGGTTGGAGCTGAACTTTATTTGTGGGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR-3UTR CCA 90 bp | TATGACGCTCCGCCCCATCTCCTTGCACACGGACACACACACACTCTCTCTCTCGCGATTCAAAGGTTGTaGGTTCGAATCCCACCAGAG | + |
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Preference number: 2 (lower is better) Translates to: YDAPPHLLAHGHTHTLSLAIQRL*VRIPPE Trigger: CTCTGGTGGGATTCGAACCCACAACCTTTGAATCGC...GAGAGAGAGAGTGTGTGTGTGTCCGTGTGCAAGGAGATGGGGCGGAGCGTCATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR-3UTR CCA 90 bp | CCCCATCTCCTTGCACACGGACACACACACACTCTCTCTCTCTCACACACACACGGCTCTGTGGCGCAATaGATAGCGCATTGGACTTCT | + |
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Preference number: 2 (lower is better) Translates to: PHLLAHGHTHTLSLSHTHGSVAQ*IAHWTS Trigger: AGAAGTCCAATGCGCTATCCATTGCGCCACAGAGCC...GTGTGTGTGTGAGAGAGAGAGAGTGTGTGTGTGTCCGTGTGCAAGGAGATGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR-3UTR CCA 90 bp | CATCCACCCTTCCTGTCACCTAGCTCATGCGCTTTCCATACACTACATTTCATTGACTCGGGAAGGGACTaGGACTGGACTAGGGTAGAG | + |
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Preference number: 2 (lower is better) Translates to: HPPFLSPSSCAFHTLHFIDSGRD*DWTRVE Trigger: CTCTACCCTAGTCCAGTCCCAGTCCCTTCCCGAGTC...AATGAAATGTAGTGTATGGAAAGCGCATGAGCTAGGTGACAGGAAGGGTGGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR-3UTR GCA 90 bp | CAAAGGTTGTGGGTTCGAATCCCACCAGAGTCGGTTTTATTACTCATTTTAATCCCCGGATCCCTCTCCTaGCCTCTGACTGGAGTCTCT | + |
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Preference number: 2 (lower is better) Translates to: QRLWVRIPPESVLLLILIPGSLS*PLTGVS Trigger: AGAGACTCCAGTCAGAGGGCAGGAGAGGGATCCGGG...GATTAAAATGAGTAATAAAACCGACTCTGGTGGGATTCGAACCCACAACCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR-3UTR GCA 90 bp | AAGCGATTCAAAGGTTGTGGGTTCGAATCCCACCAGAGTCGGTTTTATTACTCAGTAGAGAGAGTACAATaGTACACACAGGGAAGTGGG | + |
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Preference number: 2 (lower is better) Translates to: KRFKGCGFESHQSRFYYSVERVQ*YTQGSG Trigger: CCCACTTCCCTGTGTGTAGCATTGTACTCTCTCTAC...TGAGTAATAAAACCGACTCTGGTGGGATTCGAACCCACAACCTTTGAATCGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR-3UTR CCA 90 bp | CAAAGGTTGTGGGTTCGAATCCCACCAGAGTCGGTTTTATTACTCATTTTAATCCTACACACAGGGAAGTaGGACAGGGAAAAGGGATGG | + |
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Preference number: 2 (lower is better) Translates to: QRLWVRIPPESVLLLILILHTGK*DREKGW Trigger: CCATCCCTTTTCCCTGTCCCACTTCCCTGTGTGTAG...GATTAAAATGAGTAATAAAACCGACTCTGGTGGGATTCGAACCCACAACCTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR CCA 72 bp | GTGTCCGTAAGCCGGAAGGAGGCGCCGCCCGCCATGTaGCTCTGTGGCGCAATGGATAGCGCATTGGACTTC | + |
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Preference number: 3 (lower is better) Translates to: VSVSRKEAPPAM*LCGAMDSALDF Trigger: GAAGTCCAATGCGCTATCCATTGCGCCACAGAGCCACATGGCGGGCGGCGCCTCCTTCCGGCTTACGGACAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR CCA 72 bp | CGCTCCGCTCTTTACTTACCTGTCTCCCCCAGGGCTTaGGCCGTGGAGAGCAGGCCTAAAGGTGGGAGAAGG | + |
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Preference number: 3 (lower is better) Translates to: RSALYLPVSPRA*AVESRPKGGRR Trigger: CCTTCTCCCACCTTTAGGCCTGCTCTCCACGGCCCAAGCCCTGGGGGAGACAGGTAAGTAAAGAGCGGAGCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR CCA 72 bp | AGGAGGCGCCGCCCGCCATGTGGCTCTGTGGCGCAATaGATAGCGCATTGGACTTCTAGTGACGAGAAAGCG | + |
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Preference number: 3 (lower is better) Translates to: RRRRPPCGSVAQ*IAHWTSSDEKA Trigger: CGCTTTCTCGTCACTAGAAGTCCAATGCGCTATCCATTGCGCCACAGAGCCACATGGCGGGCGGCGCCTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR CCA 72 bp | CTCTTTACTTACCTGTCTCCCCCAGGGCTTGGGCCGTaGAGAGCAGGCCTAAAGGTGGGAGAAGGGTATGGG | + |
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Preference number: 3 (lower is better) Translates to: LFTYLSPPGLGP*RAGLKVGEGYG Trigger: CCCATACCCTTCTCCCACCTTTAGGCCTGCTCTCCACGGCCCAAGCCCTGGGGGAGACAGGTAAGTAAAGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR GCA 72 bp | TCGCACCTGCATCCACCCTTCCTGTCACCTAGCTCATaGGCTTTCCATACACTACATTTCATTCCGCTGACC | + |
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Preference number: 3 (lower is better) Translates to: SHLHPPFLSPSS*AFHTLHFIPLT Trigger: GGTCAGCGGAATGAAATGTAGTGTATGGAAAGCGCATGAGCTAGGTGACAGGAAGGGTGGATGCAGGTGCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR CCA 72 bp | ATTCCATGCACTAGGGACTCGGGAAGGGACTGGGACTaGACTAGGGTAGAGAGAGTACAATGCTACACACAG | + |
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Preference number: 3 (lower is better) Translates to: IPCTRDSGRDWD*TRVERVQCYTQ Trigger: CTGTGTGTAGCATTGTACTCTCTCTACCCTAGTCCAGTCCCAGTCCCTTCCCGAGTCCCTAGTGCATGGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR CCA 72 bp | CCGCCATGTGGCTCTGTGGCGCAATGGATAGCGCATTaGACTTCTAGTGACGAGAAAGCGATTCAAAGGTTG | + |
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Preference number: 3 (lower is better) Translates to: PPCGSVAQWIAH*TSSDEKAIQRL Trigger: CAACCTTTGAATCGCTTTCTCGTCACTAGAAGTCCAATGCGCTATCCATTGCGCCACAGAGCCACATGGCGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR GCA 72 bp | GGGGACACACCGGGATTTAATAACGATTTTATTCCATaGACTAGGGACTCGGGAAGGGACTGGGACTGGACT | + |
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Preference number: 3 (lower is better) Translates to: GDTPGFNNDFIP*TRDSGRDWDWT Trigger: AGTCCAGTCCCAGTCCCTTCCCGAGTCCCTAGTGCATGGAATAAAATCGTTATTAAATCCCGGTGTGTCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR GCA 72 bp | CAAATTTCGTTAGTCTCCCTCTCTGTTTCTCGCACCTaGATCCACCCTTCCTGTCACCTAGCTCATGCGCTT | + |
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Preference number: 3 (lower is better) Translates to: QISLVSLSVSRT*IHPSCHLAHAL Trigger: AAGCGCATGAGCTAGGTGACAGGAAGGGTGGATGCAGGTGCGAGAAACAGAGAGGGAGACTAACGAAATTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR CCA 72 bp | TGGACTTCTAGTGACGAGAAAGCGATTCAAAGGTTGTaGGTTCGAATCCCACCAGAGTCGGTTTTATTACTC | + |
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Preference number: 3 (lower is better) Translates to: WTSSDEKAIQRL*VRIPPESVLLL Trigger: GAGTAATAAAACCGACTCTGGTGGGATTCGAACCCACAACCTTTGAATCGCTTTCTCGTCACTAGAAGTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CCA 90 bp | TCTCGCACCTGCATCCACCCTTCCTGTCACCTAGCTCATGCGCTTTCCATACACAGCGTGCGGCCGGGCTaGCGTCGTGCGCAAAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: SRTCIHPSCHLAHALSIHSVRPG*RRAQRP Trigger: CGGCCTTTGCGCACGACGCCAGCCCGGCCGCACGCT...GTGTATGGAAAGCGCATGAGCTAGGTGACAGGAAGGGTGGATGCAGGTGCGAGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR TCA 90 bp | CCGCCCCATCTCCTTGCACACGGACACACACACACTCTCTCTCTCTCACACACACTTCTAGGCTGCGGTTaGTGCGGTCCCGGCGCCGCT | + |
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Preference number: 4 (lower is better) Translates to: PPHLLAHGHTHTLSLSHTLLGCG*CGPGAA Trigger: AGCGGCGCCGGGACCGCATCAACCGCAGCCTAGAAG...TGTGTGTGAGAGAGAGAGAGTGTGTGTGTGTCCGTGTGCAAGGAGATGGGGCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CCA 90 bp | GATTTTATTCCATGCACTAGGGACTCGGGAAGGGACTGGGACTGGACTAGGGTACGGTGGGCGCGGCGCTaGGAGCCCTGGATCTACGGC | + |
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Preference number: 4 (lower is better) Translates to: DFIPCTRDSGRDWDWTRVRWARR*EPWIYG Trigger: GCCGTAGATCCAGGGCTCCCAGCGCCGCGCCCACCG...TACCCTAGTCCAGTCCCAGTCCCTTCCCGAGTCCCTAGTGCATGGAATAAAATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CCA 90 bp | CCCCATCTCCTTGCACACGGACACACACACACTCTCTCTCTCTCACACACACACGTAAGGCGGTGGCGGTaGCGGCAGCAGTCCGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: PHLLAHGHTHTLSLSHTHVRRWR*RQQSGE Trigger: CTCACCGGACTGCTGCCGCCACCGCCACCGCCTTAC...GTGTGTGTGTGAGAGAGAGAGAGTGTGTGTGTGTCCGTGTGCAAGGAGATGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR GCA 90 bp | GGCTCTGTGGCGCAATGGATAGCGCATTGGACTTCTAGTGACGAGAAAGCGATTGCCGGGCTGGCGTCGTaGGCAAAGGCCGCCAAGCGA | + |
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Preference number: 4 (lower is better) Translates to: GSVAQWIAHWTSSDEKAIAGLAS*AKAAKR Trigger: TCGCTTGGCGGCCTTTGCGCACGACGCCAGCCCGGC...AATCGCTTTCTCGTCACTAGAAGTCCAATGCGCTATCCATTGCGCCACAGAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CCA 90 bp | CCCCATCTCCTTGCACACGGACACACACACACTCTCTCTCTCTCACACACACACTTGTCTGTAAGGCGGTaGCGGTGGCGGCAGCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: PHLLAHGHTHTLSLSHTHLSVRR*RWRQQS Trigger: GGACTGCTGCCGCCACCGCCACCGCCTTACAGACAA...GTGTGTGTGTGAGAGAGAGAGAGTGTGTGTGTGTCCGTGTGCAAGGAGATGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CCA 90 bp | CATCCACCCTTCCTGTCACCTAGCTCATGCGCTTTCCATACACTACATTTCATTAGCGCCTCGGCGTCCTaGCCTGGGGACCGGGGAACC | + |
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Preference number: 4 (lower is better) Translates to: HPPFLSPSSCAFHTLHFISASAS*PGDRGT Trigger: GGTTCCCCGGTCCCCAGGCCAGGACGCCGAGGCGCT...AATGAAATGTAGTGTATGGAAAGCGCATGAGCTAGGTGACAGGAAGGGTGGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CCA 90 bp | GGCTCTGTGGCGCAATGGATAGCGCATTGGACTTCTAGTGACGAGAAAGCGATTCGGACAAGTAGCAGCTaGCGAGCGCCTCGGCGTCCT | + |
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Preference number: 4 (lower is better) Translates to: GSVAQWIAHWTSSDEKAIRTSSS*RAPRRP Trigger: AGGACGCCGAGGCGCTCGCCAGCTGCTACTTGTCCG...AATCGCTTTCTCGTCACTAGAAGTCCAATGCGCTATCCATTGCGCCACAGAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR GCA 90 bp | AATAAAGTTCAGCTCCAACCTCAGTCTGTCGCTCCGCTCTTTACTTACCTGTCTGAAAAGCTGGGAGCGTaGGGCCGGGCTGGCGTCGTG | + |
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Preference number: 4 (lower is better) Translates to: NKVQLQPQSVAPLFTYLSEKLGA*GRAGVV Trigger: CACGACGCCAGCCCGGCCGCACGCTCCCAGCTTTTC...AGACAGGTAAGTAAAGAGCGGAGCGACAGACTGAGGTTGGAGCTGAACTTTATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CCA 90 bp | AATAAAGTTCAGCTCCAACCTCAGTCTGTCGCTCCGCTCTTTACTTACCTGTCTAGCGCGGAGAAAAGCTaGGAGCGTGCGGCCGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: NKVQLQPQSVAPLFTYLSSAEKS*ERAAGL Trigger: CAGCCCGGCCGCACGCTCCCAGCTTTTCTCCGCGCT...AGACAGGTAAGTAAAGAGCGGAGCGACAGACTGAGGTTGGAGCTGAACTTTATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CCA 90 bp | CATCCACCCTTCCTGTCACCTAGCTCATGCGCTTTCCATACACTACATTTCATTGGAGTGACGGGGCCTTaGGCGCCCCGTCTTGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: HPPFLSPSSCAFHTLHFIGVTGP*APRLVC Trigger: ACAGACAAGACGGGGCGCCCAAGGCCCCGTCACTCC...AATGAAATGTAGTGTATGGAAAGCGCATGAGCTAGGTGACAGGAAGGGTGGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CCA 90 bp | GATTTTATTCCATGCACTAGGGACTCGGGAAGGGACTGGGACTGGACTAGGGTAACGGCTTCAGCATCTTaGGGCCGTCCCTATTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: DFIPCTRDSGRDWDWTRVTASAS*GRPYSQ Trigger: CTGAGAATAGGGACGGCCCCAAGATGCTGAAGCCGT...TACCCTAGTCCAGTCCCAGTCCCTTCCCGAGTCCCTAGTGCATGGAATAAAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CCA 90 bp | AGACCCACAAATAAAGTTCAGCTCCAACCTCAGTCTGTCGCTCCGCTCTTTACTGGAGGTTCTGGTCCCTaGTCCTCTCCAGGAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: RPTNKVQLQPQSVAPLFTGGSGP*SSPGAA Trigger: TGCTGCTCCTGGAGAGGACCAGGGACCAGAACCTCC...AGTAAAGAGCGGAGCGACAGACTGAGGTTGGAGCTGAACTTTATTTGTGGGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR CAA 72 bp | AGTGAGATCAAATCTGGGAACCGAGCAAGTCTGAGCTaGGTAGCTTACGCAAGAAGCAGCCCGAGCTTTGCA | + |
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Preference number: 4 (lower is better) Translates to: SEIKSGNRASLS*VAYARSSPSFA Trigger: TGCAAAGCTCGGGCTGCTTCTTGCGTAAGCTACCAAGCTCAGACTTGCTCGGTTCCCAGATTTGATCTCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| 3UTR CAA 72 bp | CATTGGACTTCTAGTGACGAGAAAGCGATTCAAAGGTaGTGGGTTCGAATCCCACCAGAGTCGGTTTTATTA | + |
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Preference number: 4 (lower is better) Translates to: HWTSSDEKAIQR*WVRIPPESVLL Trigger: TAATAAAACCGACTCTGGTGGGATTCGAACCCACAACCTTTGAATCGCTTTCTCGTCACTAGAAGTCCAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS CCA 90 bp | GGGCGCCGGCGCGCCCGAATCCCCGGCGCGAGAGGAGCAGTGGGATaGGGACCAAGCGAGGCGGGGACTAGGAGGGCCCTGGTGCACTGG | + |
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Preference number: 5 (lower is better) Translates to: GRRRARIPGARGAVG*GPSEAGTRRALVHW Trigger: CCAGTGCACCAGGGCCCTCCTAGTCCCCGCCTCGCTTGGTCCCCATCCCACTGCTCCTCTCGCGCCGGGGATTCGGGCGCGCCGGCGCCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS CCA 90 bp | GCGGCGCTGGGAGCCCTGGATCTACGGCCTCGGGCCGGGGCGGTTTaGGGCGCCGGTAGCCGTGCAGCGCGGAGAAAAGCTGGGAGCGTG | + |
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Preference number: 5 (lower is better) Translates to: AALGALDLRPRAGAV*GAGSRAARRKAGSV Trigger: CACGCTCCCAGCTTTTCTCCGCGCTGCACGGCTACCGGCGCCCCAAACCGCCCCGGCCCGAGGCCGTAGATCCAGGGCTCCCAGCGCCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS GCA 90 bp | TGCAGCGCGGAGAAAAGCTGGGAGCGTGCGGCCGGGCTGGCGTCGTaGGCAAAGGCCGCCAAGCGAAGCAGGCACTCGCGGAAGCCGGAC | + |
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Preference number: 5 (lower is better) Translates to: CSAEKSWERAAGLAS*AKAAKRSRHSRKPD Trigger: GTCCGGCTTCCGCGAGTGCCTGCTTCGCTTGGCGGCCTTTGCGCACGACGCCAGCCCGGCCGCACGCTCCCAGCTTTTCTCCGCGCTGCA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS GCA 90 bp | TTTGGGGCGCCGGTAGCCGTGCAGCGCGGAGAAAAGCTGGGAGCGTaGGGCCGGGCTGGCGTCGTGCGCAAAGGCCGCCAAGCGAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: FGAPVAVQRGEKLGA*GRAGVVRKGRQAKQ Trigger: CTGCTTCGCTTGGCGGCCTTTGCGCACGACGCCAGCCCGGCCGCACGCTCCCAGCTTTTCTCCGCGCTGCACGGCTACCGGCGCCCCAAA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS CCA 90 bp | GGTAGCCGTGCAGCGCGGAGAAAAGCTGGGAGCGTGCGGCCGGGCTaGCGTCGTGCGCAAAGGCCGCCAAGCGAAGCAGGCACTCGCGGA | + |
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Preference number: 5 (lower is better) Translates to: GSRAARRKAGSVRPG*RRAQRPPSEAGTRG Trigger: TCCGCGAGTGCCTGCTTCGCTTGGCGGCCTTTGCGCACGACGCCAGCCCGGCCGCACGCTCCCAGCTTTTCTCCGCGCTGCACGGCTACC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CAA 90 bp | TCTCGCACCTGCATCCACCCTTCCTGTCACCTAGCTCATGCGCTTTCCATACACGCGCGGGGCCAAGGATaGGTGAAGCGGGGTCCAGCG | + |
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Preference number: 5 (lower is better) Translates to: SRTCIHPSCHLAHALSIHARGQG*VKRGPA Trigger: CGCTGGACCCCGCTTCACCAATCCTTGGCCCCGCGC...GTGTATGGAAAGCGCATGAGCTAGGTGACAGGAAGGGTGGATGCAGGTGCGAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CAA 90 bp | AATAAAGTTCAGCTCCAACCTCAGTCTGTCGCTCCGCTCTTTACTTACCTGTCTGGGAGTGACGGGGCCTaGGGCGCCCCGTCTTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: NKVQLQPQSVAPLFTYLSGSDGA*GAPSCL Trigger: CAGACAAGACGGGGCGCCCAAGGCCCCGTCACTCCC...AGACAGGTAAGTAAAGAGCGGAGCGACAGACTGAGGTTGGAGCTGAACTTTATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CAA 90 bp | AAGCGATTCAAAGGTTGTGGGTTCGAATCCCACCAGAGTCGGTTTTATTACTCATCTTCTAGGCTGCGGTaGATGCGGTCCCGGCGCCGC | + |
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Preference number: 5 (lower is better) Translates to: KRFKGCGFESHQSRFYYSSSRLR*MRSRRR Trigger: GCGGCGCCGGGACCGCATCAACCGCAGCCTAGAAGA...TGAGTAATAAAACCGACTCTGGTGGGATTCGAACCCACAACCTTTGAATCGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CAA 90 bp | GATTTAATAACGATTTTATTCCATGCACTAGGGACTCGGGAAGGGACTGGGACTCTTGGGCGCCCCGTCTaGTCTGTAAGGCGGTGGCGG | + |
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Preference number: 5 (lower is better) Translates to: DLITILFHALGTREGTGTLGRPV*SVRRWR Trigger: CCGCCACCGCCTTACAGACAAGACGGGGCGCCCAAG...AGTCCCAGTCCCTTCCCGAGTCCCTAGTGCATGGAATAAAATCGTTATTAAATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS-3UTR CAA 90 bp | GATTTTATTCCATGCACTAGGGACTCGGGAAGGGACTGGGACTGGACTAGGGTAAACGGCTTCAGCATCTaGGGGCCGTCCCTATTCTCA | + |
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Preference number: 5 (lower is better) Translates to: DFIPCTRDSGRDWDWTRVNGFSI*GPSLFS Trigger: TGAGAATAGGGACGGCCCCAAGATGCTGAAGCCGTT...TACCCTAGTCCAGTCCCAGTCCCTTCCCGAGTCCCTAGTGCATGGAATAAAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS CCA 72 bp | CGCGCCCGAATCCCCGGCGCGAGAGGAGCAGTGGGATaGGGACCAAGCGAGGCGGGGACTAGGAGGGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: RARIPGARGAVG*GPSEAGTRRAL Trigger: CAGGGCCCTCCTAGTCCCCGCCTCGCTTGGTCCCCATCCCACTGCTCCTCTCGCGCCGGGGATTCGGGCGCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS GCA 72 bp | CCGGTAGCCGTGCAGCGCGGAGAAAAGCTGGGAGCGTaGGGCCGGGCTGGCGTCGTGCGCAAAGGCCGCCAA | + |
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Preference number: 6 (lower is better) Translates to: PVAVQRGEKLGA*GRAGVVRKGRQ Trigger: TTGGCGGCCTTTGCGCACGACGCCAGCCCGGCCGCACGCTCCCAGCTTTTCTCCGCGCTGCACGGCTACCGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS CCA 72 bp | GCAGCGCGGAGAAAAGCTGGGAGCGTGCGGCCGGGCTaGCGTCGTGCGCAAAGGCCGCCAAGCGAAGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: AARRKAGSVRPG*RRAQRPPSEAG Trigger: GCCTGCTTCGCTTGGCGGCCTTTGCGCACGACGCCAGCCCGGCCGCACGCTCCCAGCTTTTCTCCGCGCTGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS CCA 72 bp | GGAGCCCTGGATCTACGGCCTCGGGCCGGGGCGGTTTaGGGCGCCGGTAGCCGTGCAGCGCGGAGAAAAGCT | + |
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Preference number: 6 (lower is better) Translates to: GALDLRPRAGAV*GAGSRAARRKA Trigger: AGCTTTTCTCCGCGCTGCACGGCTACCGGCGCCCCAAACCGCCCCGGCCCGAGGCCGTAGATCCAGGGCTCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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| CDS GCA 72 bp | GAGAAAAGCTGGGAGCGTGCGGCCGGGCTGGCGTCGTaGGCAAAGGCCGCCAAGCGAAGCAGGCACTCGCGG | + |
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Preference number: 6 (lower is better) Translates to: EKSWERAAGLAS*AKAAKRSRHSR Trigger: CCGCGAGTGCCTGCTTCGCTTGGCGGCCTTTGCGCACGACGCCAGCCCGGCCGCACGCTCCCAGCTTTTCTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024543.3 |
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