Pregenerated sensors for HES6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067071Ensembl transcript IDs: ENSMUST00000086851.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACTTCTGCCCTAGATCCTCAGAATGCCCAAAAGGCAGGGAGAGGTaGACACGAGGGAGCCCTGGCAGCTCTCCAAAAGTCTCCTGTCTT | + |
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Preference number: 1 (lower is better) Translates to: HFCPRSSECPKGRER*TRGSPGSSPKVSCL Trigger: AAGACAGGAGACTTTTGGAGAGCTGCCAGGGCTCCCTCGTGTTCACCTCTCCCTGCCTTTTGGGCATTCTGAGGATCTAGGGCAGAAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| 3UTR CCA 90 bp | GCAACTAACTCCAAAGTTCTTTATTTAATTCGGTTGGAGCATCGATaGGATGGCAACCAAACTCACACGCGCGCAACTGTGTTACAAACG | + |
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Preference number: 1 (lower is better) Translates to: ATNSKVLYLIRLEHR*DGNQTHTRATVLQT Trigger: CGTTTGTAACACAGTTGCGCGCGTGTGAGTTTGGTTGCCATCCCATCGATGCTCCAACCGAATTAAATAAAGAACTTTGGAGTTAGTTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| 3UTR-3UTR GCA 90 bp | TCAGGTCAGGATTGCTGTGGCCTGTGTGTCCCTGCCCAGGACCCTAATGCTCAGAAGATTGGCCACTTCTaGCCTAGATCCTCAGAATGC | + |
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Preference number: 2 (lower is better) Translates to: SGQDCCGLCVPAQDPNAQKIGHF*PRSSEC Trigger: GCATTCTGAGGATCTAGGGCAGAAGTGGCCAATCTT...CTGAGCATTAGGGTCCTGGGCAGGGACACACAGGCCACAGCAATCCTGACCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| 3UTR-3UTR CCA 90 bp | TCAGGTCAGGATTGCTGTGGCCTGTGTGTCCCTGCCCAGGACCCTAATGCTCAGATTCAAGTCATCTGTTaGAGAGTGGGGAGGGCATAC | + |
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Preference number: 2 (lower is better) Translates to: SGQDCCGLCVPAQDPNAQIQVIC*RVGRAY Trigger: GTATGCCCTCCCCACTCTCCAACAGATGACTTGAAT...CTGAGCATTAGGGTCCTGGGCAGGGACACACAGGCCACAGCAATCCTGACCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| 3UTR-3UTR TCA 90 bp | GATTGCTGTGGCCTGTGTGTCCCTGCCCAGGACCCTAATGCTCAGTCTCAAGATTGTCTCCACCTTATCTaGTACCCAGGGAGGAAGCAA | + |
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Preference number: 2 (lower is better) Translates to: DCCGLCVPAQDPNAQSQDCLHLI*YPGRKQ Trigger: TTGCTTCCTCCCTGGGTATCAGATAAGGTGGAGACA...ATCTTGAGACTGAGCATTAGGGTCCTGGGCAGGGACACACAGGCCACAGCAATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| 3UTR-3UTR GCA 90 bp | CGCCTCCCCTGGTCTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCAGGTCAATAGTGCTAGGGACCTaGAGGGCCTGGCCATTAGGG | + |
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Preference number: 2 (lower is better) Translates to: RLPWSHSQSSKSELPFRSIVLGT*RAWPLG Trigger: CCCTAATGGCCAGGCCCTGCAGGTCCCTAGCACTAT...TGACCTGAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAGACCAGGGGAGGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| 3UTR-3UTR CCA 90 bp | GCCAAAGTAGCAAATCTGAACTTCCTTTCAGGTCAGGATTGCTGTGGCCTGTGTTCATCTGTTGGAGAGTaGGGAGGGCATACCTGGGGG | + |
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Preference number: 2 (lower is better) Translates to: AKVANLNFLSGQDCCGLCSSVGE*GGHTWG Trigger: CCCCCAGGTATGCCCTCCCCACTCTCCAACAGATGA...ACACAGGCCACAGCAATCCTGACCTGAAAGGAAGTTCAGATTTGCTACTTTGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTGGTCTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCAGGTCAGGATTGAACACGAGGGAGCCCTaGCAGCTCTCCAAAAGTCTC | + |
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Preference number: 2 (lower is better) Translates to: PWSHSQSSKSELPFRSGLNTREP*QLSKSL Trigger: GAGACTTTTGGAGAGCTGCCAGGGCTCCCTCGTGTT...CAATCCTGACCTGAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAGACCAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| 3UTR-3UTR GCA 90 bp | CTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCAGGTCAGGATTGCTGTGGCCCTAGATCCTCAGAATaGCCAAAAGGCAGGGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: LIAKVANLNFLSGQDCCGPRSSE*PKGRER Trigger: CCTCTCCCTGCCTTTTGGGCATTCTGAGGATCTAGG...GCCACAGCAATCCTGACCTGAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| 3UTR CAA 90 bp | AGTACACCAGGAGCAACTAACTCCAAAGTTCTTTATTTAATTCGGTaGGAGCATCGATGGGATGGCAACCAAACTCACACGCGCGCAACT | + |
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Preference number: 2 (lower is better) Translates to: STPGATNSKVLYLIR*EHRWDGNQTHTRAT Trigger: AGTTGCGCGCGTGTGAGTTTGGTTGCCATCCCATCGATGCTCCAACCGAATTAAATAAAGAACTTTGGAGTTAGTTGCTCCTGGTGTACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| 3UTR-3UTR CAA 90 bp | TTCCTTTCAGGTCAGGATTGCTGTGGCCTGTGTGTCCCTGCCCAGGACCCTAATCATTCAAGTCATCTGTaGGAGAGTGGGGAGGGCATA | + |
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Preference number: 3 (lower is better) Translates to: FLSGQDCCGLCVPAQDPNHSSHL*ESGEGI Trigger: TATGCCCTCCCCACTCTCCAACAGATGACTTGAATG...ATTAGGGTCCTGGGCAGGGACACACAGGCCACAGCAATCCTGACCTGAAAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| 3UTR GCA 72 bp | AGGACCCTAATGCTCAGTCTCAAGATTGGCCACTTCTaGCCTAGATCCTCAGAATGCCCAAAAGGCAGGGAG | + |
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Preference number: 3 (lower is better) Translates to: RTLMLSLKIGHF*PRSSECPKGRE Trigger: CTCCCTGCCTTTTGGGCATTCTGAGGATCTAGGGCAGAAGTGGCCAATCTTGAGACTGAGCATTAGGGTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR TCA 90 bp | TCAGGTCAGGATTGCTGTGGCCTGTGTGTCCCTGCCCAGGACCCTAATGCTCAGTCCCCCAGCAGATCCTaGAAGCTGCTACCCTCACGC | + |
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Preference number: 4 (lower is better) Translates to: SGQDCCGLCVPAQDPNAQSPSRS*KLLPSR Trigger: GCGTGAGGGTAGCAGCTTTCAGGATCTGCTGGGGGA...CTGAGCATTAGGGTCCTGGGCAGGGACACACAGGCCACAGCAATCCTGACCTGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR GCA 90 bp | TATGCCCGCCTCCCCTGGTCTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCGCTTCAGCCTGCAGCTaGTCCCGCTCGCGCGCCCGG | + |
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Preference number: 4 (lower is better) Translates to: YARLPWSHSQSSKSELPFASACS*SRSRAR Trigger: CCGGGCGCGCGAGCGGGAGCAGCTGCAGGCTGAAGC...GAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAGACCAGGGGAGGCGGGCATA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR CCA 90 bp | GATTGCTGTGGCCTGTGTGTCCCTGCCCAGGACCCTAATGCTCAGTCTCAAGATTTCTGGGGACCCTCCTaGAGGCCAGCTGCTCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: DCCGLCVPAQDPNAQSQDFWGPS*RPAAPP Trigger: GGGAGGAGCAGCTGGCCTCCAGGAGGGTCCCCAGAA...ATCTTGAGACTGAGCATTAGGGTCCTGGGCAGGGACACACAGGCCACAGCAATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR CCA 90 bp | GTCTCCACCTTATCTGATACCCAGGGAGGAAGCAAACTTAAGGATGGCAGCCACCGGTCCTCATCCTCCTaGCCTGCACGGTCCCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: VSTLSDTQGGSKLKDGSHRSSSS*PARSRL Trigger: CAGCCGGGACCGTGCAGGCCAGGAGGATGAGGACCG...GTGGCTGCCATCCTTAAGTTTGCTTCCTCCCTGGGTATCAGATAAGGTGGAGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR GCA 90 bp | CGCCTCCCCTGGTCTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCAGGTCATCGCTTGCTTCAGCCTaGAGCTGCTCCCGCTCGCGC | + |
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Preference number: 4 (lower is better) Translates to: RLPWSHSQSSKSELPFRSSLASA*SCSRSR Trigger: GCGCGAGCGGGAGCAGCTGCAGGCTGAAGCAAGCGA...TGACCTGAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAGACCAGGGGAGGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR GCA 90 bp | TCAGGTCAGGATTGCTGTGGCCTGTGTGTCCCTGCCCAGGACCCTAATGCTCAGTGTGCACCTCATGCATaGACTGGATGTAGCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: SGQDCCGLCVPAQDPNAQCAPHA*TGCSQQ Trigger: CTGCTGGCTACATCCAGTGCATGCATGAGGTGCACA...CTGAGCATTAGGGTCCTGGGCAGGGACACACAGGCCACAGCAATCCTGACCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR GCA 90 bp | GATTGCTGTGGCCTGTGTGTCCCTGCCCAGGACCCTAATGCTCAGTCTCAAGATGCAGATCCTGAAAGCTaGTACCCTCACGCAGCGGCA | + |
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Preference number: 4 (lower is better) Translates to: DCCGLCVPAQDPNAQSQDADPES*YPHAAA Trigger: TGCCGCTGCGTGAGGGTAGCAGCTTTCAGGATCTGC...ATCTTGAGACTGAGCATTAGGGTCCTGGGCAGGGACACACAGGCCACAGCAATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR TCA 90 bp | TTCCTTTCAGGTCAGGATTGCTGTGGCCTGTGTGTCCCTGCCCAGGACCCTAATGTTCAGGAGTTCAGCTaGGACAGTGGCATCGATGGC | + |
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Preference number: 4 (lower is better) Translates to: FLSGQDCCGLCVPAQDPNVQEFS*DSGIDG Trigger: GCCATCGATGCCACTGTCTCAGCTGAACTCCTGAAC...ATTAGGGTCCTGGGCAGGGACACACAGGCCACAGCAATCCTGACCTGAAAGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR CCA 90 bp | TATGCCCGCCTCCCCTGGTCTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCCGGGACCTGGGGGACTaGACAATGGGGATTCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: YARLPWSHSQSSKSELPFRDLGD*TMGILG Trigger: CCCCAGAATCCCCATTGTCCAGTCCCCCAGGTCCCG...GAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAGACCAGGGGAGGCGGGCATA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| 3UTR CAA 72 bp | ATAGTGCTAGGGACCTGCAGGGCCTGGCCATTAGGGTaGTCATTCAAGTCATCTGTTGGAGAGTGGGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: IVLGTCRAWPLG*SFKSSVGEWGG Trigger: CCCTCCCCACTCTCCAACAGATGACTTGAATGACAACCCTAATGGCCAGGCCCTGCAGGTCCCTAGCACTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR GCA 90 bp | CGCCTCCCCTGGTCTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCAGGTCAAGCGAAGCGCTCGCTTaGTTCAGCCTGCAGCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: RLPWSHSQSSKSELPFRSSEALA*FSLQLL Trigger: GAGCAGCTGCAGGCTGAAGCAAGCGAGCGCTTCGCT...TGACCTGAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAGACCAGGGGAGGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR GCA 90 bp | CCTGGTCTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCAGGTCAGGATTGCCTCCTGGAGGCCAGCTaGTCCTCCCAGAGCCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: PGLIAKVANLNFLSGQDCLLEAS*SSQSLQ Trigger: CTGGAGGCTCTGGGAGGAGCAGCTGGCCTCCAGGAG...GCAATCCTGACCTGAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAGACCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR CCA 90 bp | CCCGCCTCCCCTGGTCTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCAGGTGTGGCATCGATGGCTTaGCACGTGGACACGAACGTG | + |
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Preference number: 4 (lower is better) Translates to: PASPGLIAKVANLNFLSGVASMA*HVDTNV Trigger: CACGTTCGTGTCCACGTGCCAAGCCATCGATGCCAC...ACCTGAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAGACCAGGGGAGGCGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR CCA 90 bp | TATGCCCGCCTCCCCTGGTCTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCGGACAATGGGGATTCTaGGGACCCTCCTGGAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: YARLPWSHSQSSKSELPFGQWGF*GPSWRP Trigger: TGGCCTCCAGGAGGGTCCCCAGAATCCCCATTGTCC...GAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAGACCAGGGGAGGCGGGCATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR GCA 90 bp | GTCTCCACCTTATCTGATACCCAGGGAGGAAGCAAACTTAAGGATGGCAGCCACACTCTCGTTGATCCGTaGGCGTCGCTTCTTCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: VSTLSDTQGGSKLKDGSHTLVDP*ASLLLH Trigger: GTGGAGAAGAAGCGACGCGCACGGATCAACGAGAGT...GTGGCTGCCATCCTTAAGTTTGCTTCCTCCCTGGGTATCAGATAAGGTGGAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR CCA 90 bp | CCCGCCTCCCCTGGTCTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCAGGTAGACAGTGGCATCGATaGCTTGGCACGTGGACACGA | + |
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Preference number: 4 (lower is better) Translates to: PASPGLIAKVANLNFLSGRQWHR*LGTWTR Trigger: TCGTGTCCACGTGCCAAGCCATCGATGCCACTGTCT...ACCTGAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAGACCAGGGGAGGCGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR CCA 90 bp | TATGCCCGCCTCCCCTGGTCTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCCCTCACGCAGCGGCATaGATTCTAGCAGGTGGTTCA | + |
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Preference number: 4 (lower is better) Translates to: YARLPWSHSQSSKSELPFPHAAA*ILAGGS Trigger: TGAACCACCTGCTAGAATCCATGCCGCTGCGTGAGG...GAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAGACCAGGGGAGGCGGGCATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR TCA 90 bp | CTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCAGGTCAGGATTGCTGTGGCAGCAGCCGCAGCTCCTaGAGACTCTCGTTGATCCGT | + |
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Preference number: 4 (lower is better) Translates to: LIAKVANLNFLSGQDCCGSSRSS*RLSLIR Trigger: ACGGATCAACGAGAGTCTTCAGGAGCTGCGGCTGCT...GCCACAGCAATCCTGACCTGAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR CCA 90 bp | CTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCAGGTCAGGATTGCTGTGGCCGATGGCTTGGCACGTaGACACGAACGTGTGCACCT | + |
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Preference number: 4 (lower is better) Translates to: LIAKVANLNFLSGQDCCGRWLGT*TRTCAP Trigger: AGGTGCACACGTTCGTGTCCACGTGCCAAGCCATCG...GCCACAGCAATCCTGACCTGAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| 3UTR CAA 72 bp | GGAGCAACTAACTCCAAAGTTCTTTATTTAATTCGGTaGGAGCATCGATGGGATGGCAACCAAACTCACACG | + |
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Preference number: 4 (lower is better) Translates to: GATNSKVLYLIR*EHRWDGNQTHT Trigger: CGTGTGAGTTTGGTTGCCATCCCATCGATGCTCCAACCGAATTAAATAAAGAACTTTGGAGTTAGTTGCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS TCA 90 bp | CCAGAGCCTCCAGGCAGCCCAGCTAGGGAGTCCCCCAGCAGATCCTaGAAGCTGCTACCCTCACGCAGCGGCATGGATTCTAGCAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: PEPPGSPARESPSRS*KLLPSRSGMDSSRW Trigger: CCACCTGCTAGAATCCATGCCGCTGCGTGAGGGTAGCAGCTTTCAGGATCTGCTGGGGGACTCCCTAGCTGGGCTGCCTGGAGGCTCTGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS GCA 90 bp | CTCCAGGCAGCCCAGCTAGGGAGTCCCCCAGCAGATCCTGAAAGCTaGTACCCTCACGCAGCGGCATGGATTCTAGCAGGTGGTTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: LQAAQLGSPPADPES*YPHAAAWILAGGSG Trigger: TCCTGAACCACCTGCTAGAATCCATGCCGCTGCGTGAGGGTAGCAGCTTTCAGGATCTGCTGGGGGACTCCCTAGCTGGGCTGCCTGGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR CAA 90 bp | TGTGTCCCTGCCCAGGACCCTAATGCTCAGTCTCAAGATTGGCCACTTCTGCCCTCGGCGTTCTCTAGCTaGGCCTGCACCTCGGTACCG | + |
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Preference number: 5 (lower is better) Translates to: CVPAQDPNAQSQDWPLLPSAFSS*ACTSVP Trigger: CGGTACCGAGGTGCAGGCCAAGCTAGAGAACGCCGA...GGGCAGAAGTGGCCAATCTTGAGACTGAGCATTAGGGTCCTGGGCAGGGACACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS GCA 90 bp | CATCGATGGCTTGGCACGTGGACACGAACGTGTGCACCTCATGCATaGACTGGATGTAGCCAGCAGCGAAGCGCTCGCTTGCTTCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: HRWLGTWTRTCAPHA*TGCSQQRSARLLQP Trigger: AGGCTGAAGCAAGCGAGCGCTTCGCTGCTGGCTACATCCAGTGCATGCATGAGGTGCACACGTTCGTGTCCACGTGCCAAGCCATCGATG 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS CCA 90 bp | GGTTCAGGAGTTCAGCTGAGACAGTGGCATCGATGGCTTGGCACGTaGACACGAACGTGTGCACCTCATGCATGCACTGGATGTAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: GSGVQLRQWHRWLGT*TRTCAPHACTGCSQ Trigger: CTGGCTACATCCAGTGCATGCATGAGGTGCACACGTTCGTGTCCACGTGCCAAGCCATCGATGCCACTGTCTCAGCTGAACTCCTGAACC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS CCA 90 bp | AGCAGGTGGTTCAGGAGTTCAGCTGAGACAGTGGCATCGATGGCTTaGCACGTGGACACGAACGTGTGCACCTCATGCATGCACTGGATG | + |
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Preference number: 5 (lower is better) Translates to: SRWFRSSAETVASMA*HVDTNVCTSCMHWM Trigger: CATCCAGTGCATGCATGAGGTGCACACGTTCGTGTCCACGTGCCAAGCCATCGATGCCACTGTCTCAGCTGAACTCCTGAACCACCTGCT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS CCA 90 bp | GCGGCATGGATTCTAGCAGGTGGTTCAGGAGTTCAGCTGAGACAGTaGCATCGATGGCTTGGCACGTGGACACGAACGTGTGCACCTCAT | + |
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Preference number: 5 (lower is better) Translates to: AAWILAGGSGVQLRQ*HRWLGTWTRTCAPH Trigger: ATGAGGTGCACACGTTCGTGTCCACGTGCCAAGCCATCGATGCCACTGTCTCAGCTGAACTCCTGAACCACCTGCTAGAATCCATGCCGC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS CCA 90 bp | AGTCCCCCAGCAGATCCTGAAAGCTGCTACCCTCACGCAGCGGCATaGATTCTAGCAGGTGGTTCAGGAGTTCAGCTGAGACAGTGGCAT | + |
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Preference number: 5 (lower is better) Translates to: SPPADPESCYPHAAA*ILAGGSGVQLRQWH Trigger: ATGCCACTGTCTCAGCTGAACTCCTGAACCACCTGCTAGAATCCATGCCGCTGCGTGAGGGTAGCAGCTTTCAGGATCTGCTGGGGGACT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR CAA 90 bp | TATGCCCGCCTCCCCTGGTCTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCCAGCGAAGCGCTCGCTaGCTTCAGCCTGCAGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: YARLPWSHSQSSKSELPFQRSAR*LQPAAA Trigger: AGCAGCTGCAGGCTGAAGCAAGCGAGCGCTTCGCTG...GAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAGACCAGGGGAGGCGGGCATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS CCA 90 bp | ATTCTAGCAGGTGGTTCAGGAGTTCAGCTGAGACAGTGGCATCGATaGCTTGGCACGTGGACACGAACGTGTGCACCTCATGCATGCACT | + |
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Preference number: 5 (lower is better) Translates to: ILAGGSGVQLRQWHR*LGTWTRTCAPHACT Trigger: AGTGCATGCATGAGGTGCACACGTTCGTGTCCACGTGCCAAGCCATCGATGCCACTGTCTCAGCTGAACTCCTGAACCACCTGCTAGAAT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS-3UTR CAA 90 bp | CCCGCCTCCCCTGGTCTCATAGCCAAAGTAGCAAATCTGAACTTCCTTTCAGGTAGTGGCATCGATGGCTaGGCACGTGGACACGAACGT | + |
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Preference number: 5 (lower is better) Translates to: PASPGLIAKVANLNFLSGSGIDG*ARGHER Trigger: ACGTTCGTGTCCACGTGCCAAGCCATCGATGCCACT...ACCTGAAAGGAAGTTCAGATTTGCTACTTTGGCTATGAGACCAGGGGAGGCGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS GCA 72 bp | CCAGCAGCGAAGCGCTCGCTTGCTTCAGCCTGCAGCTaGTCCCGCTCGCGCGCCCGGCCTCGCAGCGCGCCC | + |
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Preference number: 6 (lower is better) Translates to: PAAKRSLASACS*SRSRARPRSAP Trigger: GGGCGCGCTGCGAGGCCGGGCGCGCGAGCGGGAGCAGCTGCAGGCTGAAGCAAGCGAGCGCTTCGCTGCTGG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS TCA 72 bp | TGCACCTCGGTACCGGCCAGCAGCAGCCGCAGCTCCTaGAGACTCTCGTTGATCCGTGCGCGTCGCTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: CTSVPASSSRSS*RLSLIRARRFF Trigger: GAAGAAGCGACGCGCACGGATCAACGAGAGTCTTCAGGAGCTGCGGCTGCTGCTGGCCGGTACCGAGGTGCA 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS TCA 72 bp | CCAGGCAGCCCAGCTAGGGAGTCCCCCAGCAGATCCTaGAAGCTGCTACCCTCACGCAGCGGCATGGATTCT | + |
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Preference number: 6 (lower is better) Translates to: PGSPARESPSRS*KLLPSRSGMDS Trigger: AGAATCCATGCCGCTGCGTGAGGGTAGCAGCTTTCAGGATCTGCTGGGGGACTCCCTAGCTGGGCTGCCTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS GCA 72 bp | GCCCAGCTAGGGAGTCCCCCAGCAGATCCTGAAAGCTaGTACCCTCACGCAGCGGCATGGATTCTAGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: AQLGSPPADPES*YPHAAAWILAG Trigger: ACCTGCTAGAATCCATGCCGCTGCGTGAGGGTAGCAGCTTTCAGGATCTGCTGGGGGACTCCCTAGCTGGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS GCA 72 bp | CTTGGCACGTGGACACGAACGTGTGCACCTCATGCATaGACTGGATGTAGCCAGCAGCGAAGCGCTCGCTTG | + |
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Preference number: 6 (lower is better) Translates to: LGTWTRTCAPHA*TGCSQQRSARL Trigger: CAAGCGAGCGCTTCGCTGCTGGCTACATCCAGTGCATGCATGAGGTGCACACGTTCGTGTCCACGTGCCAAG 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS CCA 72 bp | GTTCAGCTGAGACAGTGGCATCGATGGCTTGGCACGTaGACACGAACGTGTGCACCTCATGCATGCACTGGA | + |
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Preference number: 6 (lower is better) Translates to: VQLRQWHRWLGT*TRTCAPHACTG Trigger: TCCAGTGCATGCATGAGGTGCACACGTTCGTGTCCACGTGCCAAGCCATCGATGCCACTGTCTCAGCTGAAC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS CCA 72 bp | GGTGGTTCAGGAGTTCAGCTGAGACAGTGGCATCGATaGCTTGGCACGTGGACACGAACGTGTGCACCTCAT | + |
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Preference number: 6 (lower is better) Translates to: GGSGVQLRQWHR*LGTWTRTCAPH Trigger: ATGAGGTGCACACGTTCGTGTCCACGTGCCAAGCCATCGATGCCACTGTCTCAGCTGAACTCCTGAACCACC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS CCA 72 bp | TTCAGGAGTTCAGCTGAGACAGTGGCATCGATGGCTTaGCACGTGGACACGAACGTGTGCACCTCATGCATG | + |
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Preference number: 6 (lower is better) Translates to: FRSSAETVASMA*HVDTNVCTSCM Trigger: CATGCATGAGGTGCACACGTTCGTGTCCACGTGCCAAGCCATCGATGCCACTGTCTCAGCTGAACTCCTGAA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS CCA 72 bp | GCAGATCCTGAAAGCTGCTACCCTCACGCAGCGGCATaGATTCTAGCAGGTGGTTCAGGAGTTCAGCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: ADPESCYPHAAA*ILAGGSGVQLR Trigger: TCTCAGCTGAACTCCTGAACCACCTGCTAGAATCCATGCCGCTGCGTGAGGGTAGCAGCTTTCAGGATCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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| CDS CCA 72 bp | ATTCTAGCAGGTGGTTCAGGAGTTCAGCTGAGACAGTaGCATCGATGGCTTGGCACGTGGACACGAACGTGT | + |
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Preference number: 6 (lower is better) Translates to: ILAGGSGVQLRQ*HRWLGTWTRTC Trigger: ACACGTTCGTGTCCACGTGCCAAGCCATCGATGCCACTGTCTCAGCTGAACTCCTGAACCACCTGCTAGAAT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086851.2 |
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