Pregenerated sensors for HES3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028946Ensembl transcript IDs: ENSMUST00000094438.2, ENSMUST00000218045.2
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCGGCCCGCTTTGTGCCGGTGGGAACGGAGCGCGCGAGGCCGGTTaGATGGGCCAGGGCGGGGCAGCGATTCTCCTCGCTGCGAGGGGT | + |
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Preference number: 1 (lower is better) Translates to: PGPLCAGGNGAREAG*MGQGGAAILLAARG Trigger: ACCCCTCGCAGCGAGGAGAATCGCTGCCCCGCCCTGGCCCATTCAACCGGCCTCGCGCGCTCCGTTCCCACCGGCACAAAGCGGGCCGGG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR CCA 90 bp | GCCCGCTTTGTGCCGGTGGGAACGGAGCGCGCGAGGCCGGTTGAATaGGCCAGGGCGGGGCAGCGATTCTCCTCGCTGCGAGGGGTCCGC | + |
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Preference number: 1 (lower is better) Translates to: ARFVPVGTERARPVE*ARAGQRFSSLRGVR Trigger: GCGGACCCCTCGCAGCGAGGAGAATCGCTGCCCCGCCCTGGCCCATTCAACCGGCCTCGCGCGCTCCGTTCCCACCGGCACAAAGCGGGC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR GCA 90 bp | GGGCGGGGCAGCGATTCTCCTCGCTGCGAGGGGTCCGCTCTGTGCTaGAAGCAACCGCGACCTTCTCACCGTGACGCAGCCGTGGAGAGG | + |
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Preference number: 1 (lower is better) Translates to: GRGSDSPRCEGSALC*KQPRPSHRDAAVER Trigger: CCTCTCCACGGCTGCGTCACGGTGAGAAGGTCGCGGTTGCTTGCAGCACAGAGCGGACCCCTCGCAGCGAGGAGAATCGCTGCCCCGCCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR GCA 90 bp | CCAGGGCGGGGCAGCGATTCTCCTCGCTGCGAGGGGTCCGCTCTGTaGTGCAAGCAACCGCGACCTTCTCACCGTGACGCAGCCGTGGAG | + |
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Preference number: 1 (lower is better) Translates to: PGRGSDSPRCEGSAL*CKQPRPSHRDAAVE Trigger: CTCCACGGCTGCGTCACGGTGAGAAGGTCGCGGTTGCTTGCAGCACAGAGCGGACCCCTCGCAGCGAGGAGAATCGCTGCCCCGCCCTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR GCA 90 bp | CGAGGCCGGTTGAATGGGCCAGGGCGGGGCAGCGATTCTCCTCGCTaGGAGGGGTCCGCTCTGTGCTGCAAGCAACCGCGACCTTCTCAC | + |
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Preference number: 1 (lower is better) Translates to: RGRLNGPGRGSDSPR*EGSALCCKQPRPSH Trigger: GTGAGAAGGTCGCGGTTGCTTGCAGCACAGAGCGGACCCCTCGCAGCGAGGAGAATCGCTGCCCCGCCCTGGCCCATTCAACCGGCCTCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR CCA 90 bp | CGTCCCCTCCCATCTTCTCTAGAAGCGGGAGGTAGAGAGCTGGTCTaGATGGAGTGGGTGGGGCTGGAGTGGATGAGTTCACCTAGCAGT | + |
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Preference number: 1 (lower is better) Translates to: RPLPSSLEAGGRELV*MEWVGLEWMSSPSS Trigger: ACTGCTAGGTGAACTCATCCACTCCAGCCCCACCCACTCCATCCAGACCAGCTCTCTACCTCCCGCTTCTAGAGAAGATGGGAGGGGACG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR CAA 90 bp | GCCCGGCCCGCTTTGTGCCGGTGGGAACGGAGCGCGCGAGGCCGGTaGAATGGGCCAGGGCGGGGCAGCGATTCTCCTCGCTGCGAGGGG | + |
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Preference number: 2 (lower is better) Translates to: ARPALCRWERSARGR*NGPGRGSDSPRCEG Trigger: CCCCTCGCAGCGAGGAGAATCGCTGCCCCGCCCTGGCCCATTCAACCGGCCTCGCGCGCTCCGTTCCCACCGGCACAAAGCGGGCCGGGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR-3UTR CCA 90 bp | GAACGGAGCGCGCGAGGCCGGTTGAATGGGCCAGGGCGGGGCAGCGATTCTCCTACCGTGACGCAGCCGTaGAGAGGGGGCAGGGGCGGG | + |
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Preference number: 2 (lower is better) Translates to: ERSARGRLNGPGRGSDSPTVTQP*RGGRGG Trigger: CCCGCCCCTGCCCCCTCTCCACGGCTGCGTCACGGT...AGGAGAATCGCTGCCCCGCCCTGGCCCATTCAACCGGCCTCGCGCGCTCCGTTC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR-3UTR TCA 90 bp | GAACGGAGCGCGCGAGGCCGGTTGAATGGGCCAGGGCGGGGCAGCGATTCTCCTTGGGGCTGGAGTGGATaGGTTCACCTAGCAGTGCAG | + |
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Preference number: 2 (lower is better) Translates to: ERSARGRLNGPGRGSDSPWGWSG*VHLAVQ Trigger: CTGCACTGCTAGGTGAACTCATCCACTCCAGCCCCA...AGGAGAATCGCTGCCCCGCCCTGGCCCATTCAACCGGCCTCGCGCGCTCCGTTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR-3UTR CCA 90 bp | GAACGGAGCGCGCGAGGCCGGTTGAATGGGCCAGGGCGGGGCAGCGATTCTCCTGGGGTGATGGGGACGTaGGGAGAGAGCTTGAGTCTA | + |
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Preference number: 2 (lower is better) Translates to: ERSARGRLNGPGRGSDSPGVMGT*GESLSL Trigger: TAGACTCAAGCTCTCTCCCCACGTCCCCATCACCCC...AGGAGAATCGCTGCCCCGCCCTGGCCCATTCAACCGGCCTCGCGCGCTCCGTTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR-3UTR GCA 90 bp | AGAAGGTCTTGGGTGGTGATAGGATGGGAGCCCCTTGCTGAAGGGGCGGAGCCCAGCGATTCTCCTCGCTaGGAGGGGTCCGCTCTGTGC | + |
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Preference number: 2 (lower is better) Translates to: RRSWVVIGWEPLAEGAEPSDSPR*EGSALC Trigger: GCACAGAGCGGACCCCTCGCAGCGAGGAGAATCGCT...GGGCTCCGCCCCTTCAGCAAGGGGCTCCCATCCTATCACCACCCAAGACCTTCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR-3UTR CCA 90 bp | ATTCTCCTCGCTGCGAGGGGTCCGCTCTGTGCTGCAAGCAACCGCGACCTTCTCGAGAGCTGGTCTGGATaGAGTGGGTGGGGCTGGAGT | + |
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Preference number: 2 (lower is better) Translates to: ILLAARGPLCAASNRDLLESWSG*SGWGWS Trigger: ACTCCAGCCCCACCCACTCCATCCAGACCAGCTCTC...GAGAAGGTCGCGGTTGCTTGCAGCACAGAGCGGACCCCTCGCAGCGAGGAGAAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR-3UTR CCA 90 bp | AGCGATTCTCCTCGCTGCGAGGGGTCCGCTCTGTGCTGCAAGCAACCGCGACCTTGGGTGGGGCTGGAGTaGATGAGTTCACCTAGCAGT | + |
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Preference number: 2 (lower is better) Translates to: SDSPRCEGSALCCKQPRPWVGLE*MSSPSS Trigger: ACTGCTAGGTGAACTCATCCACTCCAGCCCCACCCA...AGGTCGCGGTTGCTTGCAGCACAGAGCGGACCCCTCGCAGCGAGGAGAATCGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR-3UTR GCA 90 bp | AGAAGGTCTTGGGTGGTGATAGGATGGGAGCCCCTTGCTGAAGGGGCGGAGCCCTGCAGTCACCATGGGTaGCCCAAAATAGTTTCCCCA | + |
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Preference number: 2 (lower is better) Translates to: RRSWVVIGWEPLAEGAEPCSHHG*PKIVSP Trigger: TGGGGAAACTATTTTGGGGCACCCATGGTGACTGCA...GGGCTCCGCCCCTTCAGCAAGGGGCTCCCATCCTATCACCACCCAAGACCTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR-3UTR CCA 90 bp | AGAAGGTCTTGGGTGGTGATAGGATGGGAGCCCCTTGCTGAAGGGGCGGAGCCCTTCCTGCAGTCACCATaGGTGCCCCAAAATAGTTTC | + |
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Preference number: 2 (lower is better) Translates to: RRSWVVIGWEPLAEGAEPFLQSP*VPQNSF Trigger: GAAACTATTTTGGGGCACCCATGGTGACTGCAGGAA...GGGCTCCGCCCCTTCAGCAAGGGGCTCCCATCCTATCACCACCCAAGACCTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR TCA 72 bp | CGCTCTGTGCTGCAAGCAACCGCGACCTTCTCACCGTaGCGCAGCCGTGGAGAGGGGGCAGGGGCGGGCTGC | + |
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Preference number: 3 (lower is better) Translates to: RSVLQATATFSP*RSRGEGAGAGC Trigger: GCAGCCCGCCCCTGCCCCCTCTCCACGGCTGCGTCACGGTGAGAAGGTCGCGGTTGCTTGCAGCACAGAGCG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR TCA 72 bp | CTTTGTGCCGGTGGGAACGGAGCGCGCGAGGCCGGTTaGATGGGCCAGGGCGGGGCAGCGATTCTCCTCGCT | + |
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Preference number: 3 (lower is better) Translates to: LCAGGNGAREAG*MGQGGAAILLA Trigger: AGCGAGGAGAATCGCTGCCCCGCCCTGGCCCATTCAACCGGCCTCGCGCGCTCCGTTCCCACCGGCACAAAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR GCA 72 bp | TTGAATGGGCCAGGGCGGGGCAGCGATTCTCCTCGCTaGGAGGGGTCCGCTCTGTGCTGCAAGCAACCGCGA | + |
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Preference number: 3 (lower is better) Translates to: LNGPGRGSDSPR*EGSALCCKQPR Trigger: TCGCGGTTGCTTGCAGCACAGAGCGGACCCCTCGCAGCGAGGAGAATCGCTGCCCCGCCCTGGCCCATTCAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR GCA 72 bp | AGCGATTCTCCTCGCTGCGAGGGGTCCGCTCTGTGCTaGAAGCAACCGCGACCTTCTCACCGTGACGCAGCC | + |
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Preference number: 3 (lower is better) Translates to: SDSPRCEGSALC*KQPRPSHRDAA Trigger: GGCTGCGTCACGGTGAGAAGGTCGCGGTTGCTTGCAGCACAGAGCGGACCCCTCGCAGCGAGGAGAATCGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR GCA 72 bp | GGCAGCGATTCTCCTCGCTGCGAGGGGTCCGCTCTGTaGTGCAAGCAACCGCGACCTTCTCACCGTGACGCA | + |
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Preference number: 3 (lower is better) Translates to: GSDSPRCEGSAL*CKQPRPSHRDA Trigger: TGCGTCACGGTGAGAAGGTCGCGGTTGCTTGCAGCACAGAGCGGACCCCTCGCAGCGAGGAGAATCGCTGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR CCA 72 bp | CCATCTTCTCTAGAAGCGGGAGGTAGAGAGCTGGTCTaGATGGAGTGGGTGGGGCTGGAGTGGATGAGTTCA | + |
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Preference number: 3 (lower is better) Translates to: PSSLEAGGRELV*MEWVGLEWMSS Trigger: TGAACTCATCCACTCCAGCCCCACCCACTCCATCCAGACCAGCTCTCTACCTCCCGCTTCTAGAGAAGATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR GCA 72 bp | CAGAAGGCACTAAAGTGGTCTTTGCAGAACACAAAATaGTCAGGTCTCAGCAGTGCTAAGCAGGGATGGGTG | + |
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Preference number: 3 (lower is better) Translates to: QKALKWSLQNTK*SGLSSAKQGWV Trigger: CACCCATCCCTGCTTAGCACTGCTGAGACCTGAGCATTTTGTGTTCTGCAAAGACCACTTTAGTGCCTTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR CCA 72 bp | TGTATATTGGTAATAAGAGATTCTGGGATTTTGCACTaGACCCCAGACTGGTCCACGACAGGAGCCCTCTCC | + |
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Preference number: 3 (lower is better) Translates to: CILVIRDSGILH*TPDWSTTGALS Trigger: GGAGAGGGCTCCTGTCGTGGACCAGTCTGGGGTCCAGTGCAAAATCCCAGAATCTCTTATTACCAATATACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS-3UTR CCA 90 bp | GTGGGAACGGAGCGCGCGAGGCCGGTTGAATGGGCCAGGGCGGGGCAGCGATTCGGTTGGCGCTGTCCGTaGTGCTGCCTTCCCTGCGCT | + |
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Preference number: 4 (lower is better) Translates to: VGTERARPVEWARAGQRFGWRCP*CCLPCA Trigger: AGCGCAGGGAAGGCAGCACCACGGACAGCGCCAACC...GAATCGCTGCCCCGCCCTGGCCCATTCAACCGGCCTCGCGCGCTCCGTTCCCAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS-3UTR TCA 90 bp | GTGGGAACGGAGCGCGCGAGGCCGGTTGAATGGGCCAGGGCGGGGCAGCGATTCGCTCCAGTGACACGTTaGTGCGTGCACGGCGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: VGTERARPVEWARAGQRFAPVTR*CVHGAS Trigger: AGAAGCGCCGTGCACGCATCAACGTGTCACTGGAGC...GAATCGCTGCCCCGCCCTGGCCCATTCAACCGGCCTCGCGCGCTCCGTTCCCAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS-3UTR CCA 90 bp | GAACGGAGCGCGCGAGGCCGGTTGAATGGGCCAGGGCGGGGCAGCGATTCTCCTGGTAGTCCACCCCACTaGGTACTGGCCAGAGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: ERSARGRLNGPGRGSDSPGSPPH*VLARVL Trigger: AAGGACTCTGGCCAGTACCCAGTGGGGTGGACTACC...AGGAGAATCGCTGCCCCGCCCTGGCCCATTCAACCGGCCTCGCGCGCTCCGTTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS-3UTR CCA 90 bp | TGCACTGGACCCCAGACTGGTCCACGACAGGAGCCCTCTCCCCAACACAGTCGAAGGTCGCCTGTGGGTTaGCGCTGTCCGTGGTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: CTGPQTGPRQEPSPQHSRRSPVG*RCPWCC Trigger: GCAGCACCACGGACAGCGCCAACCCACAGGCGACCT...TCGACTGTGTTGGGGAGAGGGCTCCTGTCGTGGACCAGTCTGGGGTCCAGTGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS-3UTR CCA 90 bp | AGCGATTCTCCTCGCTGCGAGGGGTCCGCTCTGTGCTGCAAGCAACCGCGACCTAACAGAGGTCGCCTGTaGGTTGGCGCTGTCCGTGGT | + |
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Preference number: 4 (lower is better) Translates to: SDSPRCEGSALCCKQPRPNRGRL*VGAVRG Trigger: ACCACGGACAGCGCCAACCCACAGGCGACCTCTGTT...AGGTCGCGGTTGCTTGCAGCACAGAGCGGACCCCTCGCAGCGAGGAGAATCGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS-3UTR TCA 90 bp | AGAAGGTCTTGGGTGGTGATAGGATGGGAGCCCCTTGCTGAAGGGGCGGAGCCCCTCGGCCTGGCAGTTTaGTGCAGGATGTGGTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: RRSWVVIGWEPLAEGAEPLGLAV*CRMWCH Trigger: GTGGCACCACATCCTGCATCAAACTGCCAGGCCGAG...GGGCTCCGCCCCTTCAGCAAGGGGCTCCCATCCTATCACCACCCAAGACCTTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS-3UTR TCA 90 bp | ATGGAGTGGGTGGGGCTGGAGTGGATGAGTTCACCTAGCAGTGCAGACCCGAATCCTCAGCTGCTCCAGTaGCACGTTGATGCGTGCACG | + |
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Preference number: 4 (lower is better) Translates to: MEWVGLEWMSSPSSADPNPQLLQ*HVDACT Trigger: CGTGCACGCATCAACGTGTCACTGGAGCAGCTGAGG...ATTCGGGTCTGCACTGCTAGGTGAACTCATCCACTCCAGCCCCACCCACTCCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS-3UTR CCA 90 bp | TGCACTGGACCCCAGACTGGTCCACGACAGGAGCCCTCTCCCCAACACAGTCGACTCGTACTCTCGGCCTaGCAGTTTGATGCAGGATGT | + |
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Preference number: 4 (lower is better) Translates to: CTGPQTGPRQEPSPQHSRLVLSA*QFDAGC Trigger: ACATCCTGCATCAAACTGCCAGGCCGAGAGTACGAG...TCGACTGTGTTGGGGAGAGGGCTCCTGTCGTGGACCAGTCTGGGGTCCAGTGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS-3UTR TCA 90 bp | ATGGAGTGGGTGGGGCTGGAGTGGATGAGTTCACCTAGCAGTGCAGACCCGAATCCAGAGTCCTTGCAGTaGGTTCTGGAGGCTTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: MEWVGLEWMSSPSSADPNPESLQ*VLEASH Trigger: ATGAGAAGCCTCCAGAACTCACTGCAAGGACTCTGG...ATTCGGGTCTGCACTGCTAGGTGAACTCATCCACTCCAGCCCCACCCACTCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS-3UTR GCA 90 bp | ATTGGTAATAAGAGATTCTGGGATTTTGCACTGGACCCCAGACTGGTCCACGACTGGTGCTGCCTTCCCTaGGCTGGAGCAGCAAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: IGNKRFWDFALDPRLVHDWCCLP*AGAARG Trigger: GCCCCTTGCTGCTCCAGCGCAGGGAAGGCAGCACCA...GTCGTGGACCAGTCTGGGGTCCAGTGCAAAATCCCAGAATCTCTTATTACCAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR CAA 72 bp | TTCGAGTCCAGGGCTCAGAAGGCACTAAAGTGGTCTTaGCAGAACACAAAATGCTCAGGTCTCAGCAGTGCT | + |
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Preference number: 4 (lower is better) Translates to: FESRAQKALKWS*QNTKCSGLSSA Trigger: AGCACTGCTGAGACCTGAGCATTTTGTGTTCTGCAAAGACCACTTTAGTGCCTTCTGAGCCCTGGACTCGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| 3UTR CAA 72 bp | CATAATTGTATATTGGTAATAAGAGATTCTGGGATTTaGCACTGGACCCCAGACTGGTCCACGACAGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: HNCILVIRDSGI*HWTPDWSTTGA Trigger: GGCTCCTGTCGTGGACCAGTCTGGGGTCCAGTGCAAAATCCCAGAATCTCTTATTACCAATATACAATTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS TCA 90 bp | CACCTGCAGCGCGACTGGGGGCCCAGATGGCCGGGAGGCAAGGGTTaGGAACAGAGGTCGCCTGTGGGTTGGCGCTGTCCGTGGTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: HLQRDWGPRWPGGKG*EQRSPVGWRCPWCC Trigger: GCAGCACCACGGACAGCGCCAACCCACAGGCGACCTCTGTTCTCAACCCTTGCCTCCCGGCCATCTGGGCCCCCAGTCGCGCTGCAGGTG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000094438.2 ENSMUST00000218045.2 |
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| CDS-3UTR CAA 90 bp | GTGGGAACGGAGCGCGCGAGGCCGGTTGAATGGGCCAGGGCGGGGCAGCGATTCGCCGGGAGGCAAGGGTaGAGAACAGAGGTCGCCTGT | + |
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Preference number: 5 (lower is better) Translates to: VGTERARPVEWARAGQRFAGRQG*RTEVAC Trigger: ACAGGCGACCTCTGTTCTCAACCCTTGCCTCCCGGC...GAATCGCTGCCCCGCCCTGGCCCATTCAACCGGCCTCGCGCGCTCCGTTCCCAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS CCA 90 bp | GGCCCAGATGGCCGGGAGGCAAGGGTTGAGAACAGAGGTCGCCTGTaGGTTGGCGCTGTCCGTGGTGCTGCCTTCCCTGCGCTGGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: GPDGREARVENRGRL*VGAVRGAAFPALEQ Trigger: CTGCTCCAGCGCAGGGAAGGCAGCACCACGGACAGCGCCAACCCACAGGCGACCTCTGTTCTCAACCCTTGCCTCCCGGCCATCTGGGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094438.2 ENSMUST00000218045.2 |
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| CDS-3UTR CAA 90 bp | AGAAGGTCTTGGGTGGTGATAGGATGGGAGCCCCTTGCTGAAGGGGCGGAGCCCGCCACGCAAGCCGCCTaGGAAGCCGGACGGGTAGTC | + |
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Preference number: 5 (lower is better) Translates to: RRSWVVIGWEPLAEGAEPATQAA*EAGRVV Trigger: GACTACCCGTCCGGCTTCCAAGGCGGCTTGCGTGGC...GGGCTCCGCCCCTTCAGCAAGGGGCTCCCATCCTATCACCACCCAAGACCTTCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS GCA 90 bp | CACGGCGCTTCTTCTCCATCAGAGGCTTGGAGATCTTTCGGAAGCTaGTGGCTGGGCCACCGAGGCTGTCCCTCGATGTGGGCTCGGTGC | + |
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Preference number: 5 (lower is better) Translates to: HGASSPSEAWRSFGS*WLGHRGCPSMWARC Trigger: GCACCGAGCCCACATCGAGGGACAGCCTCGGTGGCCCAGCCAGCAGCTTCCGAAAGATCTCCAAGCCTCTGATGGAGAAGAAGCGCCGTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218045.2 |
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| CDS CCA 90 bp | GGCGCTTCTTCTCCATCAGAGGCTTGGAGATCTTTCGGAAGCTGCTaGCTGGGCCACCGAGGCTGTCCCTCGATGTGGGCTCGGTGCCCA | + |
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Preference number: 5 (lower is better) Translates to: GASSPSEAWRSFGSC*LGHRGCPSMWARCP Trigger: TGGGCACCGAGCCCACATCGAGGGACAGCCTCGGTGGCCCAGCCAGCAGCTTCCGAAAGATCTCCAAGCCTCTGATGGAGAAGAAGCGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218045.2 |
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| CDS-3UTR CAA 90 bp | ACACAAAATGCTCAGGTCTCAGCAGTGCTAAGCAGGGATGGGTGGGACCCAGGAGAGGTCGCCTGTGGGTaGGCGCTGTCCGTGGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: TQNAQVSAVLSRDGWDPGEVACG*ALSVVL Trigger: CAGCACCACGGACAGCGCCAACCCACAGGCGACCTC...TCCTGGGTCCCACCCATCCCTGCTTAGCACTGCTGAGACCTGAGCATTTTGTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS-3UTR CAA 90 bp | ATTGGTAATAAGAGATTCTGGGATTTTGCACTGGACCCCAGACTGGTCCACGACTGCTCCAGTGACACGTaGATGCGTGCACGGCGCTTC | + |
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Preference number: 5 (lower is better) Translates to: IGNKRFWDFALDPRLVHDCSSDT*MRARRF Trigger: GAAGCGCCGTGCACGCATCAACGTGTCACTGGAGCA...GTCGTGGACCAGTCTGGGGTCCAGTGCAAAATCCCAGAATCTCTTATTACCAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094438.2 |
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| CDS CAA 90 bp | TCCCTCTCCGGGCCGAAGCCTCTGGCTCACGCCACGCAAGCCGCCTaGGAAGCCGGACGGGTAGTCCACCCCACTGGGTACTGGCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: SLSGPKPLAHATQAA*EAGRVVHPTGYWPE Trigger: CTCTGGCCAGTACCCAGTGGGGTGGACTACCCGTCCGGCTTCCAAGGCGGCTTGCGTGGCGTGAGCCAGAGGCTTCGGCCCGGAGAGGGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094438.2 ENSMUST00000218045.2 |
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| CDS CAA 90 bp | CCACCTGCAGCGCGACTGGGGGCCCAGATGGCCGGGAGGCAAGGGTaGAGAACAGAGGTCGCCTGTGGGTTGGCGCTGTCCGTGGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: PPAARLGAQMAGRQG*RTEVACGLALSVVL Trigger: CAGCACCACGGACAGCGCCAACCCACAGGCGACCTCTGTTCTCAACCCTTGCCTCCCGGCCATCTGGGCCCCCAGTCGCGCTGCAGGTGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000094438.2 ENSMUST00000218045.2 |
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| CDS TCA 72 bp | CGCGACTGGGGGCCCAGATGGCCGGGAGGCAAGGGTTaGGAACAGAGGTCGCCTGTGGGTTGGCGCTGTCCG | + |
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Preference number: 6 (lower is better) Translates to: RDWGPRWPGGKG*EQRSPVGWRCP Trigger: CGGACAGCGCCAACCCACAGGCGACCTCTGTTCTCAACCCTTGCCTCCCGGCCATCTGGGCCCCCAGTCGCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000094438.2 ENSMUST00000218045.2 |
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| CDS CAA 72 bp | GGGCCGAAGCCTCTGGCTCACGCCACGCAAGCCGCCTaGGAAGCCGGACGGGTAGTCCACCCCACTGGGTAC | + |
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Preference number: 6 (lower is better) Translates to: GPKPLAHATQAA*EAGRVVHPTGY Trigger: GTACCCAGTGGGGTGGACTACCCGTCCGGCTTCCAAGGCGGCTTGCGTGGCGTGAGCCAGAGGCTTCGGCCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094438.2 ENSMUST00000218045.2 |
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| CDS GCA 72 bp | GAACAGAGGTCGCCTGTGGGTTGGCGCTGTCCGTGGTaGTGCCTTCCCTGCGCTGGAGCAGCAAGGGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: EQRSPVGWRCPW*CLPCAGAARGS Trigger: GCTGCCCCTTGCTGCTCCAGCGCAGGGAAGGCAGCACCACGGACAGCGCCAACCCACAGGCGACCTCTGTTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094438.2 ENSMUST00000218045.2 |
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| CDS CCA 72 bp | GGCCGGGAGGCAAGGGTTGAGAACAGAGGTCGCCTGTaGGTTGGCGCTGTCCGTGGTGCTGCCTTCCCTGCG | + |
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Preference number: 6 (lower is better) Translates to: GREARVENRGRL*VGAVRGAAFPA Trigger: CGCAGGGAAGGCAGCACCACGGACAGCGCCAACCCACAGGCGACCTCTGTTCTCAACCCTTGCCTCCCGGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094438.2 ENSMUST00000218045.2 |
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| CDS CAA 72 bp | GGGAGGCAAGGGTTGAGAACAGAGGTCGCCTGTGGGTaGGCGCTGTCCGTGGTGCTGCCTTCCCTGCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: GRQGLRTEVACG*ALSVVLPSLRW Trigger: CCAGCGCAGGGAAGGCAGCACCACGGACAGCGCCAACCCACAGGCGACCTCTGTTCTCAACCCTTGCCTCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094438.2 ENSMUST00000218045.2 |
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| CDS CAA 90 bp | CAGATGGCCGGGAGGCAAGGGTTGAGAACAGAGGTCGCCTGTGGGTaGGCGCTGTCCGTGGTGCTGCCTTCCCTGCGCTGGAGCAGCAAG | + |
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Preference number: 6 (lower is better) Translates to: QMAGRQGLRTEVACG*ALSVVLPSLRWSSK Trigger: CTTGCTGCTCCAGCGCAGGGAAGGCAGCACCACGGACAGCGCCAACCCACAGGCGACCTCTGTTCTCAACCCTTGCCTCCCGGCCATCTG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094438.2 ENSMUST00000218045.2 |
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| CDS CCA 72 bp | AGCCGCCTTGGAAGCCGGACGGGTAGTCCACCCCACTaGGTACTGGCCAGAGTCCTTGCAGTGAGTTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: SRLGSRTGSPPH*VLARVLAVSSG Trigger: TCCAGAACTCACTGCAAGGACTCTGGCCAGTACCCAGTGGGGTGGACTACCCGTCCGGCTTCCAAGGCGGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094438.2 ENSMUST00000218045.2 |
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| CDS GCA 72 bp | TCTTCTCCATCAGAGGCTTGGAGATCTTTCGGAAGCTaGTGGCTGGGCCACCGAGGCTGTCCCTCGATGTGG | + |
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Preference number: 6 (lower is better) Translates to: SSPSEAWRSFGS*WLGHRGCPSMW Trigger: CCACATCGAGGGACAGCCTCGGTGGCCCAGCCAGCAGCTTCCGAAAGATCTCCAAGCCTCTGATGGAGAAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218045.2 |
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| CDS TCA 72 bp | GCGAAACCCGGGTCTCGTACTCTCGGCCTGGCAGTTTaGTGCAGGATGTGGTGCCACAACATCGGTGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: AKPGSRTLGLAV*CRMWCHNIGGR Trigger: TCTTCCACCGATGTTGTGGCACCACATCCTGCATCAAACTGCCAGGCCGAGAGTACGAGACCCGGGTTTCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094438.2 ENSMUST00000218045.2 |
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| CDS CCA 72 bp | GGCAGTTTGATGCAGGATGTGGTGCCACAACATCGGTaGAAGACTCAAGGAGACCTCCAGGGAGAGGGAGCG | + |
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Preference number: 6 (lower is better) Translates to: GSLMQDVVPQHR*KTQGDLQGEGA Trigger: CGCTCCCTCTCCCTGGAGGTCTCCTTGAGTCTTCCACCGATGTTGTGGCACCACATCCTGCATCAAACTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094438.2 ENSMUST00000218045.2 |
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| CDS TCA 72 bp | ATCGGCCTTCTCCAGCTTTCGTTTCCGTATCTGATGTaGGTAGTGTCTCTCCAGAAGAGACCTCAGCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: IGLLQLSFPYLM*VVSLQKRPQLL Trigger: GAGCAGCTGAGGTCTCTTCTGGAGAGACACTACTCACATCAGATACGGAAACGAAAGCTGGAGAAGGCCGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094438.2 ENSMUST00000218045.2 |
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