Pregenerated sensors for HES1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022528Ensembl transcript IDs: ENSMUST00000023171.8
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGGCCCAACTTGCAGGGTaGGCTGCCGGGAGGGGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTAQLAG*AAGRGR Trigger: GCGCCCCCTCCCGGCAGCGCACCCTGCAAGTTGGGC...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR TCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGATGACCGGGCCGCTGTaGGCGAAGGCCCCGTTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTMTGPL*AKAPLG Trigger: CCCCAACGGGGCCTTCGCTCACAGCGGCCCGGTCAT...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR GCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGAGCGCGGCGGTCATCTaGGCCCGCTGCAGGTTCCGG | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTSAAVI*ARCRFR Trigger: CCGGAACCTGCAGCGGGCGCAGATGACCGCCGCGCT...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR GCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGCCTGGCTGCCCAACTTaGAGGGTGCGCTGCCGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTPGCPT*RVRCRE Trigger: CTCCCGGCAGCGCACCCTGCAAGTTGGGCAGCCAGG...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR TCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGTGGTGTAGACCGGGATaGCCGGGCCGCTGTGAGCGA | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTWCRPG*PGRCER Trigger: TCGCTCACAGCGGCCCGGTCATCCCGGTCTACACCA...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR GCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGCCTCTCCAGCCTGGCTaGCCAACTTGCAGGGTGCGC | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTPLQPG*PTCRVR Trigger: GCGCACCCTGCAAGTTGGGCAGCCAGGCTGGAGAGG...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR CCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGATGCAGTTGGCCAGGTaGCCCAGCAGCCGAGTGCGC | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTMQLAR*PSSRVR Trigger: GCGCACTCGGCTGCTGGGCCACCTGGCCAACTGCAT...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR GCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGGTCATCTGCGCCCGCTaGAGGTTCCGGAGGTGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTVICAR*RFRRCF Trigger: GAAGCACCTCCGGAACCTGCAGCGGGCGCAGATGAC...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR CCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGCGTGTTGACACTGGCTaGGGTAGCAGCCACCGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTRVDTG*GSSHRG Trigger: TCCCCGGTGGCTGCTACCCCAGCCAGTGTCAACACG...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR CCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGTCTGGGTCATGCAGTTaGCCAGGTGGCCCAGCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTSGSCS*PGGPAA Trigger: GGCTGCTGGGCCACCTGGCCAACTGCATGACCCAGA...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR CCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGGCAGCCTCTCCAGCCTaGCTGCCCAACTTGCAGGGT | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTAASPA*LPNLQG Trigger: ACCCTGCAAGTTGGGCAGCCAGGCTGGAGAGGCTGC...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR TCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGCGTTCATGCACTCGCTaGAGCCGGCGCGGTATTTCC | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTRSCTR*SRRGIS Trigger: GGAAATACCGCGCCGGCTTCAGCGAGTGCATGAACG...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR CCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGAGCCGCCAAAAACCTTaGCAGCCTCTCCAGCCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTSRQKP*QPLQPG Trigger: GCCAGGCTGGAGAGGCTGCCAAGGTTTTTGGCGGCT...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR TCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGAGGCCCCGTTGGGGATaGGAAAGGCAAATTGGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTRPRWG*ERQIGR Trigger: ACGGCCAATTTGCCTTTCTCATCCCCAACGGGGCCT...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR TCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGACATGGAGTCCGAAGTaGGCGAGGAGCCACTGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTTWSPK*ARSHWK Trigger: CTTCCAGTGGCTCCTCGCTCACTTCGGACTCCATGT...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR TCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGGGTAGGTCATGGCGTTaGTCTGGGTCATGCAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTGRSWR*SGSCSW Trigger: CCAACTGCATGACCCAGATCAACGCCATGACCTACC...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR CCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGGTCATGGCGTTGATCTaGGTCATGCAGTTGGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTVMALI*VMQLAR Trigger: CCTGGCCAACTGCATGACCCAGATCAACGCCATGAC...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR CCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGCTCAGAGGCCGTCTTTaGTTTGTCCGGTGTCGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTLRGRL*FVRCRV Trigger: AACACGACACCGGACAAACCAAAGACGGCCTCTGAG...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR GCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGTGCAGGTTCCGGAGGTaGTTCACAGTCATTTCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTCRFRR*FTVISR Trigger: TCTGGAAATGACTGTGAAGCACCTCCGGAACCTGCA...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR GCA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGACTTTCATTTATTCTTaGCCTTCGCCTCTTCTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: PSSFLVSVRRERWARDFTTFIYS*PSPLLH Trigger: ATGGAGAAGAGGCGAAGGGCAAGAATAAATGAAAGT...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS GCA 90 bp | CCACTTGGAAGCCGCCAAAAACCTTGGCAGCCTCTCCAGCCTGGCTaGCCAACTTGCAGGGTGCGCTGCCGGGAGGGGGCGCCGCGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: PLGSRQKPWQPLQPG*PTCRVRCREGAPRP Trigger: GGGGCGCGGCGCCCCCTCCCGGCAGCGCACCCTGCAAGTTGGGCAGCCAGGCTGGAGAGGCTGCCAAGGTTTTTGGCGGCTTCCAAGTGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS GCA 90 bp | AACACGCTCGGGTCTGTGCTGAGCGCGGCGGTCATCTGCGCCCGCTaGAGGTTCCGGAGGTGCTTCACAGTCATTTCCAGAATGTCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: NTLGSVLSAAVICAR*RFRRCFTVISRMSA Trigger: GGCAGACATTCTGGAAATGACTGTGAAGCACCTCCGGAACCTGCAGCGGGCGCAGATGACCGCCGCGCTCAGCACAGACCCGAGCGTGTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS CCA 90 bp | TTGGGGATGAGAAAGGCAAATTGGCCGTCAGGAGCCGGCACCACTTaGAAGCCGCCAAAAACCTTGGCAGCCTCTCCAGCCTGGCTGCCC | + |
|
Preference number: 5 (lower is better) Translates to: LGMRKANWPSGAGTT*KPPKTLAASPAWLP Trigger: GGGCAGCCAGGCTGGAGAGGCTGCCAAGGTTTTTGGCGGCTTCCAAGTGGTGCCGGCTCCTGACGGCCAATTTGCCTTTCTCATCCCCAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS TCA 90 bp | CGGTCTCCACATGGAGTCCGAAGTGAGCGAGGAGCCACTGGAAGGTaGCACTGCGTTAGGACCCACCGAGGTCCCACTGTTGCTGGTGTA | + |
|
Preference number: 5 (lower is better) Translates to: RSPHGVRSERGATGR*HCVRTHRGPTVAGV Trigger: TACACCAGCAACAGTGGGACCTCGGTGGGTCCTAACGCAGTGTCACCTTCCAGTGGCTCCTCGCTCACTTCGGACTCCATGTGGAGACCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR CAA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGGCCTGGCTGCCCAACTaGCAGGGTGCGCTGCCGGGA | + |
|
Preference number: 5 (lower is better) Translates to: PSSFLVSVRRERWARDFTAWLPN*QGALPG Trigger: TCCCGGCAGCGCACCCTGCAAGTTGGGCAGCCAGGC...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS CCA 90 bp | CTCAGAGGCCGTCTTTGGTTTGTCCGGTGTCGTGTTGACACTGGCTaGGGTAGCAGCCACCGGGGAGGAGGAATTTTTCTCCATTATATC | + |
|
Preference number: 5 (lower is better) Translates to: LRGRLWFVRCRVDTG*GSSHRGGGIFLHYI Trigger: GATATAATGGAGAAAAATTCCTCCTCCCCGGTGGCTGCTACCCCAGCCAGTGTCAACACGACACCGGACAAACCAAAGACGGCCTCTGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR CAA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGAAGCCGCCAAAAACCTaGGCAGCCTCTCCAGCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: PSSFLVSVRRERWARDFTKPPKT*AASPAW Trigger: CCAGGCTGGAGAGGCTGCCAAGGTTTTTGGCGGCTT...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR CAA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGTTGTCCGGTGTCGTGTaGACACTGGCTGGGGTAGCA | + |
|
Preference number: 5 (lower is better) Translates to: PSSFLVSVRRERWARDFTLSGVV*TLAGVA Trigger: TGCTACCCCAGCCAGTGTCAACACGACACCGGACAA...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR CAA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGGCTCAGAGGCCGTCTTaGGTTTGTCCGGTGTCGTGT | + |
|
Preference number: 5 (lower is better) Translates to: PSSFLVSVRRERWARDFTAQRPS*VCPVSC Trigger: ACACGACACCGGACAAACCAAAGACGGCCTCTGAGC...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS-3UTR CAA 90 bp | CCAAGTTCGTTTTTAGTGTCCGTCAGAAGAGAGAGGTGGGCTAGGGACTTTACGGAGGCCGTCTTTGGTTaGTCCGGTGTCGTGTTGACA | + |
|
Preference number: 5 (lower is better) Translates to: PSSFLVSVRRERWARDFTEAVFG*SGVVLT Trigger: TGTCAACACGACACCGGACAAACCAAAGACGGCCTC...CGTAAAGTCCCTAGCCCACCTCTCTCTTCTGACGGACACTAAAAACGAACTTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS GCA 72 bp | AGCCGCCAAAAACCTTGGCAGCCTCTCCAGCCTGGCTaGCCAACTTGCAGGGTGCGCTGCCGGGAGGGGGCG | + |
|
Preference number: 6 (lower is better) Translates to: SRQKPWQPLQPG*PTCRVRCREGA Trigger: CGCCCCCTCCCGGCAGCGCACCCTGCAAGTTGGGCAGCCAGGCTGGAGAGGCTGCCAAGGTTTTTGGCGGCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS TCA 72 bp | CCACCGAGGTCCCACTGTTGCTGGTGTAGACCGGGATaGCCGGGCCGCTGTGAGCGAAGGCCCCGTTGGGGA | + |
|
Preference number: 6 (lower is better) Translates to: PPRSHCCWCRPG*PGRCERRPRWG Trigger: TCCCCAACGGGGCCTTCGCTCACAGCGGCCCGGTCATCCCGGTCTACACCAGCAACAGTGGGACCTCGGTGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS GCA 72 bp | AACACGCTCGGGTCTGTGCTGAGCGCGGCGGTCATCTaGGCCCGCTGCAGGTTCCGGAGGTGCTTCACAGTC | + |
|
Preference number: 6 (lower is better) Translates to: NTLGSVLSAAVI*ARCRFRRCFTV Trigger: GACTGTGAAGCACCTCCGGAACCTGCAGCGGGCGCAGATGACCGCCGCGCTCAGCACAGACCCGAGCGTGTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS GCA 72 bp | GGGTCTGTGCTGAGCGCGGCGGTCATCTGCGCCCGCTaGAGGTTCCGGAGGTGCTTCACAGTCATTTCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: GSVLSAAVICAR*RFRRCFTVISR Trigger: TCTGGAAATGACTGTGAAGCACCTCCGGAACCTGCAGCGGGCGCAGATGACCGCCGCGCTCAGCACAGACCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS CAA 72 bp | GTGAGCGAAGGCCCCGTTGGGGATGAGAAAGGCAAATaGGCCGTCAGGAGCCGGCACCACTTGGAAGCCGCC | + |
|
Preference number: 6 (lower is better) Translates to: VSEGPVGDEKGK*AVRSRHHLEAA Trigger: GGCGGCTTCCAAGTGGTGCCGGCTCCTGACGGCCAATTTGCCTTTCTCATCCCCAACGGGGCCTTCGCTCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS CAA 90 bp | AATTGGCCGTCAGGAGCCGGCACCACTTGGAAGCCGCCAAAAACCTaGGCAGCCTCTCCAGCCTGGCTGCCCAACTTGCAGGGTGCGCTG | + |
|
Preference number: 6 (lower is better) Translates to: NWPSGAGTTWKPPKT*AASPAWLPNLQGAL Trigger: CAGCGCACCCTGCAAGTTGGGCAGCCAGGCTGGAGAGGCTGCCAAGGTTTTTGGCGGCTTCCAAGTGGTGCCGGCTCCTGACGGCCAATT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS CCA 72 bp | GTCATGGCGTTGATCTGGGTCATGCAGTTGGCCAGGTaGCCCAGCAGCCGAGTGCGCACCTCGGTGTTAACG | + |
|
Preference number: 6 (lower is better) Translates to: VMALIWVMQLAR*PSSRVRTSVLT Trigger: CGTTAACACCGAGGTGCGCACTCGGCTGCTGGGCCACCTGGCCAACTGCATGACCCAGATCAACGCCATGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS CAA 72 bp | TGCTCAGAGGCCGTCTTTGGTTTGTCCGGTGTCGTGTaGACACTGGCTGGGGTAGCAGCCACCGGGGAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: CSEAVFGLSGVV*TLAGVAATGEE Trigger: CTCCTCCCCGGTGGCTGCTACCCCAGCCAGTGTCAACACGACACCGGACAAACCAAAGACGGCCTCTGAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS CAA 90 bp | GTTGGGGATGAGAAAGGCAAATTGGCCGTCAGGAGCCGGCACCACTaGGAAGCCGCCAAAAACCTTGGCAGCCTCTCCAGCCTGGCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: VGDEKGKLAVRSRHH*EAAKNLGSLSSLAA Trigger: GGCAGCCAGGCTGGAGAGGCTGCCAAGGTTTTTGGCGGCTTCCAAGTGGTGCCGGCTCCTGACGGCCAATTTGCCTTTCTCATCCCCAAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS CCA 72 bp | AGAAAGGCAAATTGGCCGTCAGGAGCCGGCACCACTTaGAAGCCGCCAAAAACCTTGGCAGCCTCTCCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: RKANWPSGAGTT*KPPKTLAASPA Trigger: GGCTGGAGAGGCTGCCAAGGTTTTTGGCGGCTTCCAAGTGGTGCCGGCTCCTGACGGCCAATTTGCCTTTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS CAA 72 bp | GAGAAAGGCAAATTGGCCGTCAGGAGCCGGCACCACTaGGAAGCCGCCAAAAACCTTGGCAGCCTCTCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: EKGKLAVRSRHH*EAAKNLGSLSS Trigger: GCTGGAGAGGCTGCCAAGGTTTTTGGCGGCTTCCAAGTGGTGCCGGCTCCTGACGGCCAATTTGCCTTTCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||
| CDS CCA 72 bp | CGTCTTTGGTTTGTCCGGTGTCGTGTTGACACTGGCTaGGGTAGCAGCCACCGGGGAGGAGGAATTTTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: RLWFVRCRVDTG*GSSHRGGGIFL Trigger: GAGAAAAATTCCTCCTCCCCGGTGGCTGCTACCCCAGCCAGTGTCAACACGACACCGGACAAACCAAAGACG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023171.8 |
||