RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HEPHL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031936

Ensembl transcript IDs: ENSMUST00000159985.2

Found 246 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCCGGAGGATTCAGGAGATCCCACTTCCATCAGTGCAGATGGACTTaGACCTCCCACAAACTCCTCGGGAGCTTGTCCACCTTGGAACAA +
Preference number: 1 (lower is better)
Translates to: SGGFRRSHFHQCRWT*TSHKLLGSLSTLEQ
Trigger: TTGTTCCAAGGTGGACAAGCTCCCGAGGAGTTTGTGGGAGGTCCAAGTCCATCTGCACTGATGGAAGTGGGATCTCCTGAATCCTCCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR GCA 90 bp CCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTaGTCTAACGTCATGTGTCTGGCAACAGCATCCCAGGGCAGCTTG +
Preference number: 1 (lower is better)
Translates to: PTCSPGHSSDPPQRQ*SNVMCLATASQGSL
Trigger: CAAGCTGCCCTGGGATGCTGTTGCCAGACACATGACGTTAGAGCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR TCA 90 bp ACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAATaGAAAGTGAGAGTCGAGATTCTGGCAGAGACAGGGAGCCTCTGG +
Preference number: 1 (lower is better)
Translates to: TFIEDADVEKCPLNE*KVRVEILAETGSLW
Trigger: CCAGAGGCTCCCTGTCTCTGCCAGAATCTCGACTCTCACTTTTCATTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR TCA 90 bp TCTAACGTCATGTGTCTGGCAACAGCATCCCAGGGCAGCTTGCCCTaGGCTAAGGTAGAATTCCCAGTCTATAATAAACAATGTTGCTTT +
Preference number: 1 (lower is better)
Translates to: SNVMCLATASQGSLP*AKVEFPVYNKQCCF
Trigger: AAAGCAACATTGTTTATTATAGACTGGGAATTCTACCTTAGCTCAGGGCAAGCTGCCCTGGGATGCTGTTGCCAGACACATGACGTTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR GCA 90 bp GTCCTTTCTCCTCCTTGTCAATCAGTTGCATTGATATATGCCTCCTaGTACCCCTCATATGATGAAATCATAACTTTCATAGAAGATGCA +
Preference number: 1 (lower is better)
Translates to: VLSPPCQSVALIYAS*YPSYDEIITFIEDA
Trigger: TGCATCTTCTATGAAAGTTATGATTTCATCATATGAGGGGTAGCAGGAGGCATATATCAATGCAACTGATTGACAAGGAGGAGAAAGGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR GCA 90 bp TGTTTGACGATGCGGTCAAGCAAACTACAAACAACTATTAGTGGTTaGATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCCCTCA +
Preference number: 1 (lower is better)
Translates to: CLTMRSSKLQTTISG*IILPKTMASINFPS
Trigger: TGAGGGGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTGTTTGTAGTTTGCTTGACCGCATCGTCAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR GCA 90 bp GTAATGGATGCTTGCCCTGCTTCTGTGCAATTGTGCAGCCTCCCACGTATGAACCAATGCGTGGCTCTCTaGGTTAGAGGGGGAAGGTCA +
Preference number: 2 (lower is better)
Translates to: VMDACPASVQLCSLPRMNQCVAL*VRGGRS
Trigger: TGACCTTCCCCCTCTAACGCAGAGAGCCACGCATTG...GTTCATACGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR CCA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCGAGACAGGGAGCCTCTaGCTTATGACGAAGAAGTCA +
Preference number: 2 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCETGSL*LMTKKS
Trigger: TGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTC...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR TCA 90 bp GAGGGTCAGCAGCTCTCAATCCAGTGCATTTTCCTTTGTCGTGTGTTTTATACCAGAGGCCCAGAAGCCTaGTCTAGGATACAGTGTCCA +
Preference number: 2 (lower is better)
Translates to: EGQQLSIQCIFLCRVFYTRGPEA*SRIQCP
Trigger: TGGACACTGTATCCTAGATCAGGCTTCTGGGCCTCT...GGTATAAAACACACGACAAAGGAAAATGCACTGGATTGAGAGCTGCTGACCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR TCA 90 bp GTAATGGATGCTTGCCCTGCTTCTGTGCAATTGTGCAGCCTCCCACGTATGAACCGTGTGTTTTATACCTaGGAATCATTCACAGCCAGT +
Preference number: 2 (lower is better)
Translates to: VMDACPASVQLCSLPRMNRVFYT*ESFTAS
Trigger: ACTGGCTGTGAATGATTCTCAGGTATAAAACACACG...GTTCATACGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR TCA 90 bp TCTAGGGAGCCTAAGGAGAGGGTGCATTGTGTTCTTACAGGTTTAGTTCTGTTGGGGCACAGTTTCATGTaGCAGTGTTTAGCACCAGTG +
Preference number: 2 (lower is better)
Translates to: SREPKERVHCVLTGLVLLGHSFM*QCLAPV
Trigger: CACTGGTGCTAAACACTGTCACATGAAACTGTGCCC...CAACAGAACTAAACCTGTAAGAACACAATGCACCCTCTCCTTAGGCTCCCTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR GCA 90 bp TCAATAAGCCACGCAATCACACTGTCAGTAGTTAGCAGGCTGGAATTCAGAGTCCGAAGAAGTCAAGCCTaGTTCTCCACTGATTTTAGC +
Preference number: 2 (lower is better)
Translates to: SISHAITLSVVSRLEFRVRRSQA*FSTDFS
Trigger: GCTAAAATCAGTGGAGAAGCAGGCTTGACTTCTTCG...GACTCTGAATTCCAGCCTGCTAACTACTGACAGTGTGATTGCGTGGCTTATTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR GCA 90 bp GTAATGGATGCTTGCCCTGCTTCTGTGCAATTGTGCAGCCTCCCACGTATGAACTTAACAAGCAGAGAATaGAGGATTTTAAAGGTCCTT +
Preference number: 2 (lower is better)
Translates to: VMDACPASVQLCSLPRMNLTSRE*RILKVL
Trigger: AAGGACCTTTAAAATCCTGCATTCTCTGCTTGTTAA...GTTCATACGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR CAA 90 bp TCAGTAGTTAGCAGGCTGGAATTCAGAGTCATTTGTGTCCACTGTTaGACGATGCGGTCAAGCAAACTACAAACAACTATTAGTGGTTGC +
Preference number: 2 (lower is better)
Translates to: SVVSRLEFRVICVHC*TMRSSKLQTTISGC
Trigger: GCAACCACTAATAGTTGTTTGTAGTTTGCTTGACCGCATCGTCAAACAGTGGACACAAATGACTCTGAATTCCAGCCTGCTAACTACTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR GCA 90 bp AGACAGACAGATGTCCACGGCACTCTAATGTTTTCTAGAAGCTACACATCTAGATTCCTTGGTGAACAATaGATCGGTCCCGTTTCTGTT +
Preference number: 2 (lower is better)
Translates to: RQTDVHGTLMFSRSYTSRFLGEQ*IGPVSV
Trigger: AACAGAAACGGGACCGATGCATTGTTCACCAAGGAA...TCTAGATGTGTAGCTTCTAGAAAACATTAGAGTGCCGTGGACATCTGTCTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR GCA 90 bp TCTAGGGAGCCTAAGGAGAGGGTGCATTGTGTTCTTACAGGTTTAGTTCTGTTGTCCTTGTCAATCAGTTaGATTGATATATGCCTCCTG +
Preference number: 2 (lower is better)
Translates to: SREPKERVHCVLTGLVLLSLSIS*IDICLL
Trigger: CAGGAGGCATATATCAATGCAACTGATTGACAAGGA...CAACAGAACTAAACCTGTAAGAACACAATGCACCCTCTCCTTAGGCTCCCTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR TCA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAAGCACATTGCTTTGGATaGCACATTCCAGAGGCCCAG +
Preference number: 2 (lower is better)
Translates to: EIITFIEDADVEKCPLNEAHCFG*HIPEAQ
Trigger: CTGGGCCTCTGGAATGTGTCATCCAAAGCAATGTGC...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR TCA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCACCTGGACATTCAAGTaGCCCACCACAAAGGCAGTG +
Preference number: 2 (lower is better)
Translates to: QLLVVASFYLRLWLLSISTWTFK*PTTKAV
Trigger: CACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGT...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR GCA 90 bp TCTAGGGAGCCTAAGGAGAGGGTGCATTGTGTTCTTACAGGTTTAGTTCTGTTGAACTTTCATAGAAGATaGAGATGTGGAAAAATGCCC +
Preference number: 2 (lower is better)
Translates to: SREPKERVHCVLTGLVLLNFHRR*RCGKMP
Trigger: GGGCATTTTTCCACATCTGCATCTTCTATGAAAGTT...CAACAGAACTAAACCTGTAAGAACACAATGCACCCTCTCCTTAGGCTCCCTAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR CAA 90 bp TTTAACAAGCAGAGAATGCAGGATTTTAAAGGTCCTTTCTCCTCCTaGTCAATCAGTTGCATTGATATATGCCTCCTGCTACCCCTCATA +
Preference number: 2 (lower is better)
Translates to: FNKQRMQDFKGPFSS*SISCIDICLLLPLI
Trigger: TATGAGGGGTAGCAGGAGGCATATATCAATGCAACTGATTGACAAGGAGGAGAAAGGACCTTTAAAATCCTGCATTCTCTGCTTGTTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR CAA 90 bp TGCAGGATTTTAAAGGTCCTTTCTCCTCCTTGTCAATCAGTTGCATaGATATATGCCTCCTGCTACCCCTCATATGATGAAATCATAACT +
Preference number: 2 (lower is better)
Translates to: CRILKVLSPPCQSVA*IYASCYPSYDEIIT
Trigger: AGTTATGATTTCATCATATGAGGGGTAGCAGGAGGCATATATCAATGCAACTGATTGACAAGGAGGAGAAAGGACCTTTAAAATCCTGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR TCA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCTGTTTAGCACCAGTGTaGCTCCAGACAGACAGATGT +
Preference number: 2 (lower is better)
Translates to: QLLVVASFYLRLWLLSISCLAPV*LQTDRC
Trigger: ACATCTGTCTGTCTGGAGTCACACTGGTGCTAAACA...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR CCA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCTTCCATCAGTGCAGATaGACTTGGACCTCCCACAAA +
Preference number: 2 (lower is better)
Translates to: QLLVVASFYLRLWLLSISFHQCR*TWTSHK
Trigger: TTTGTGGGAGGTCCAAGTCCATCTGCACTGATGGAA...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR GCA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCAGCCTAAGGAGAGGGTaGATTGTGTTCTTACAGGTT +
Preference number: 2 (lower is better)
Translates to: QLLVVASFYLRLWLLSISSLRRG*IVFLQV
Trigger: AACCTGTAAGAACACAATGCACCCTCTCCTTAGGCT...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR GCA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCAGTTGCATTGATATATaGCTCCTGCTACCCCTCATA +
Preference number: 2 (lower is better)
Translates to: QLLVVASFYLRLWLLSISSCIDI*LLLPLI
Trigger: TATGAGGGGTAGCAGGAGGCATATATCAATGCAACT...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR TCA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAATTTGACTTAAGTCAGTaGAAACATCTTCCAGAGGGT +
Preference number: 2 (lower is better)
Translates to: EIITFIEDADVEKCPLNEFDLSQ*KHLPEG
Trigger: ACCCTCTGGAAGATGTTTTCACTGACTTAAGTCAAA...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR GCA 72 bp GGCTCCGGAGGATTCAGGAGATCCCACTTCCATCAGTaGAGATGGACTTGGACCTCCCACAAACTCCTCGGG +
Preference number: 3 (lower is better)
Translates to: GSGGFRRSHFHQ*RWTWTSHKLLG
Trigger: CCCGAGGAGTTTGTGGGAGGTCCAAGTCCATCTGCACTGATGGAAGTGGGATCTCCTGAATCCTCCGGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR CCA 72 bp ACCCACCACAAAGGCAGTGCTCTAACGTCATGTGTCTaGCAACAGCATCCCAGGGCAGCTTGCCCTGAGCTA +
Preference number: 3 (lower is better)
Translates to: THHKGSALTSCV*QQHPRAACPEL
Trigger: TAGCTCAGGGCAAGCTGCCCTGGGATGCTGTTGCCAGACACATGACGTTAGAGCACTGCCTTTGTGGTGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR CCA 72 bp TTCAGGAGATCCCACTTCCATCAGTGCAGATGGACTTaGACCTCCCACAAACTCCTCGGGAGCTTGTCCACC +
Preference number: 3 (lower is better)
Translates to: FRRSHFHQCRWT*TSHKLLGSLST
Trigger: GGTGGACAAGCTCCCGAGGAGTTTGTGGGAGGTCCAAGTCCATCTGCACTGATGGAAGTGGGATCTCCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR CCA 72 bp GTGAGAGTCGAGATTCTGGCAGAGACAGGGAGCCTCTaGCTTATGACGAAGAAGTCAAGCCTGCTTCTCCAC +
Preference number: 3 (lower is better)
Translates to: VRVEILAETGSL*LMTKKSSLLLH
Trigger: GTGGAGAAGCAGGCTTGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTCTGCCAGAATCTCGACTCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR TCA 72 bp TCGAGATTCTGGCAGAGACAGGGAGCCTCTGGCTTATaGCGAAGAAGTCAAGCCTGCTTCTCCACTGATTTT +
Preference number: 3 (lower is better)
Translates to: SRFWQRQGASGL*RRSQACFSTDF
Trigger: AAAATCAGTGGAGAAGCAGGCTTGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTCTGCCAGAATCTCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR TCA 72 bp TTGCTTTGGATGACACATTCCAGAGGCCCAGAAGCCTaGTCTAGGATACAGTGTCCAAGTTCCTTGGTGAAC +
Preference number: 3 (lower is better)
Translates to: LLWMTHSRGPEA*SRIQCPSSLVN
Trigger: GTTCACCAAGGAACTTGGACACTGTATCCTAGATCAGGCTTCTGGGCCTCTGGAATGTGTCATCCAAAGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR TCA 72 bp GGGCTACCTGAGGCAGCATTGTTTGACTTAAGTCAGTaGAAACATCTTCCAGAGGGTAACCTCCCAGTTGTT +
Preference number: 3 (lower is better)
Translates to: GLPEAALFDLSQ*KHLPEGNLPVV
Trigger: AACAACTGGGAGGTTACCCTCTGGAAGATGTTTTCACTGACTTAAGTCAAACAATGCTGCCTCAGGTAGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR TCA 72 bp ATGTGTCTGGCAACAGCATCCCAGGGCAGCTTGCCCTaGGCTAAGGTAGAATTCCCAGTCTATAATAAACAA +
Preference number: 3 (lower is better)
Translates to: MCLATASQGSLP*AKVEFPVYNKQ
Trigger: TTGTTTATTATAGACTGGGAATTCTACCTTAGCTCAGGGCAAGCTGCCCTGGGATGCTGTTGCCAGACACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR TCA 72 bp GAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAATaGAAAGTGAGAGTCGAGATTCTGGCAGAGACAGGG +
Preference number: 3 (lower is better)
Translates to: EDADVEKCPLNE*KVRVEILAETG
Trigger: CCCTGTCTCTGCCAGAATCTCGACTCTCACTTTTCATTCATTTAGGGGGCATTTTTCCACATCTGCATCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR CAA 90 bp TCAATAAGCCACGCAATCACACTGTCAGTAGTTAGCAGGCTGGAATTCAGAGTCATAAAGCACATTGCTTaGGATGACACATTCCAGAGG +
Preference number: 3 (lower is better)
Translates to: SISHAITLSVVSRLEFRVIKHIA*DDTFQR
Trigger: CCTCTGGAATGTGTCATCCAAAGCAATGTGCTTTAT...GACTCTGAATTCCAGCCTGCTAACTACTGACAGTGTGATTGCGTGGCTTATTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR GCA 72 bp TTTGACATACTAAGGATAAGTAATGGATGCTTGCCCTaGTTCTGTGCAATTGTGCAGCCTCCCACGTATGAA +
Preference number: 3 (lower is better)
Translates to: FDILRISNGCLP*FCAIVQPPTYE
Trigger: TTCATACGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTACTTATCCTTAGTATGTCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR CAA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAAAAACTCCTCGGGAGCTaGTCCACCTTGGAACAACTG +
Preference number: 3 (lower is better)
Translates to: EIITFIEDADVEKCPLNEKLLGS*STLEQL
Trigger: CAGTTGTTCCAAGGTGGACAAGCTCCCGAGGAGTTT...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR CAA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCCAGTGTCCAAGTTCCTaGGTGAACAATGCATCGGTC +
Preference number: 3 (lower is better)
Translates to: QLLVVASFYLRLWLLSISQCPSS*VNNASV
Trigger: GACCGATGCATTGTTCACCAAGGAACTTGGACACTG...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR CAA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCGGTCCTTTCTCCTCCTaGTCAATCAGTTGCATTGAT +
Preference number: 3 (lower is better)
Translates to: QLLVVASFYLRLWLLSISGPFSS*SISCID
Trigger: ATCAATGCAACTGATTGACAAGGAGGAGAAAGGACC...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR GCA 72 bp CCTCCTTGTCAATCAGTTGCATTGATATATGCCTCCTaGTACCCCTCATATGATGAAATCATAACTTTCATA +
Preference number: 3 (lower is better)
Translates to: PPCQSVALIYAS*YPSYDEIITFI
Trigger: TATGAAAGTTATGATTTCATCATATGAGGGGTAGCAGGAGGCATATATCAATGCAACTGATTGACAAGGAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR-3UTR CAA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCCCAGTGCATTTTCCTTaGTCGTGTGTTTTATACCTG +
Preference number: 3 (lower is better)
Translates to: QLLVVASFYLRLWLLSISPVHFP*SCVLYL
Trigger: CAGGTATAAAACACACGACAAAGGAAAATGCACTGG...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR GCA 72 bp ATGCGGTCAAGCAAACTACAAACAACTATTAGTGGTTaGATCATTTTACCTAAGACTATGGCTTCTATCAAT +
Preference number: 3 (lower is better)
Translates to: MRSSKLQTTISG*IILPKTMASIN
Trigger: ATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTGTTTGTAGTTTGCTTGACCGCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp AGAGACAGGGAGCCTCTGGCTTATGACGAAGAAGTCAAGCCTGCTTCTCCACTGGCCAGGGAGTCACGATaGGTCCCTCGTAGGTGGATG +
Preference number: 4 (lower is better)
Translates to: RDREPLAYDEEVKPASPLARESR*VPRRWM
Trigger: CATCCACCTACGAGGGACTCATCGTGACTCCCTGGC...CAGTGGAGAAGCAGGCTTGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp AGAGACAGGGAGCCTCTGGCTTATGACGAAGAAGTCAAGCCTGCTTCTCCACTGAGGGGCATCAATGTGTaGGTGGTACACCCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: RDREPLAYDEEVKPASPLRGINV*VVHPGQ
Trigger: CTGACCTGGGTGTACCACTCACACATTGATGCCCCT...CAGTGGAGAAGCAGGCTTGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCCCCTGCACCTTTGGGTaGGGAGCATTACCCCTGCAG +
Preference number: 4 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCPCTFG*GALPLQ
Trigger: CTGCAGGGGTAATGCTCCTCACCCAAAGGTGCAGGG...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp AGAGACAGGGAGCCTCTGGCTTATGACGAAGAAGTCAAGCCTGCTTCTCCACTGCCCATCCCAAACAGGTaGCAGGACACAGATTCGCCA +
Preference number: 4 (lower is better)
Translates to: RDREPLAYDEEVKPASPLPIPNR*QDTDSP
Trigger: TGGCGAATCTGTGTCCTGGCACCTGTTTGGGATGGG...CAGTGGAGAAGCAGGCTTGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp AGAGACAGGGAGCCTCTGGCTTATGACGAAGAAGTCAAGCCTGCTTCTCCACTGACAACATCTGCCCGGTaGCCTCTGGTGATGAAGGTG +
Preference number: 4 (lower is better)
Translates to: RDREPLAYDEEVKPASPLTTSAR*PLVMKV
Trigger: CACCTTCATCACCAGAGGGCACCGGGCAGATGTTGT...CAGTGGAGAAGCAGGCTTGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCCTCCACACCTTGGGCTaGAATGGAGTAGGGCCGGCT +
Preference number: 4 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCLHTLG*NGVGPA
Trigger: AGCCGGCCCTACTCCATTGCAGCCCAAGGTGTGGAG...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR CAA 72 bp TGGACCTCCCACAAACTCCTCGGGAGCTTGTCCACCTaGGAACAACTGAGGGCACAGTTTCATGTGACAGTG +
Preference number: 4 (lower is better)
Translates to: WTSHKLLGSLST*EQLRAQFHVTV
Trigger: CACTGTCACATGAAACTGTGCCCTCAGTTGTTCCAAGGTGGACAAGCTCCCGAGGAGTTTGTGGGAGGTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCCCCCCTCTCGACATGTaGTCAGAGGCCCCATCAAAC +
Preference number: 4 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCPPLDM*SEAPSN
Trigger: GTTTGATGGGGCCTCTGATCACATGTCGAGAGGGGG...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCGCCGTTGTGGCCATATaGGGAAACAGAGCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCAVVAI*GNRARE
Trigger: CTCCCTGGCTCTGTTTCCCCATATGGCCACAACGGC...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp AGAGACAGGGAGCCTCTGGCTTATGACGAAGAAGTCAAGCCTGCTTCTCCACTGCCTCTTCAGCGGCGATaGAAAAGGTTCTTAGCATCC +
Preference number: 4 (lower is better)
Translates to: RDREPLAYDEEVKPASPLPLQRR*KRFLAS
Trigger: GGATGCTAAGAACCTTTTTCATCGCCGCTGAAGAGG...CAGTGGAGAAGCAGGCTTGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp TCAATAAGCCACGCAATCACACTGTCAGTAGTTAGCAGGCTGGAATTCAGAGTCCACGTCTCCCACTTCTaGCCTCAGGATGGGACCCAG +
Preference number: 4 (lower is better)
Translates to: SISHAITLSVVSRLEFRVHVSHF*PQDGTQ
Trigger: CTGGGTCCCATCCTGAGGGCAGAAGTGGGAGACGTG...GACTCTGAATTCCAGCCTGCTAACTACTGACAGTGTGATTGCGTGGCTTATTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp AGAGACAGGGAGCCTCTGGCTTATGACGAAGAAGTCAAGCCTGCTTCTCCACTGTGCCTTGGCTCCTCTTaGACGCAGATTCTTGCCAAA +
Preference number: 4 (lower is better)
Translates to: RDREPLAYDEEVKPASPLCLGSS*TQILAK
Trigger: TTTGGCAAGAATCTGCGTCCAAGAGGAGCCAAGGCA...CAGTGGAGAAGCAGGCTTGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp TCAATAAGCCACGCAATCACACTGTCAGTAGTTAGCAGGCTGGAATTCAGAGTCGACCCATGCCTCTCGTaGAGTGGGGTAAGGTGGAAC +
Preference number: 4 (lower is better)
Translates to: SISHAITLSVVSRLEFRVDPCLS*SGVRWN
Trigger: GTTCCACCTTACCCCACTTCACGAGAGGCATGGGTC...GACTCTGAATTCCAGCCTGCTAACTACTGACAGTGTGATTGCGTGGCTTATTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp GTAATGGATGCTTGCCCTGCTTCTGTGCAATTGTGCAGCCTCCCACGTATGAACGAGTTTTCCATTGTTTaGGTCCTCCACACCTTGGGC +
Preference number: 4 (lower is better)
Translates to: VMDACPASVQLCSLPRMNEFSIV*VLHTLG
Trigger: GCCCAAGGTGTGGAGGACTCAAACAATGGAAAACTC...GTTCATACGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp GAGGGTCAGCAGCTCTCAATCCAGTGCATTTTCCTTTGTCGTGTGTTTTATACCAGCATCCGTGGGGAGTaGACAGGACTGGACTTCCCT +
Preference number: 4 (lower is better)
Translates to: EGQQLSIQCIFLCRVFYTSIRGE*TGLDFP
Trigger: AGGGAAGTCCAGTCCTGTGCACTCCCCACGGATGCT...GGTATAAAACACACGACAAAGGAAAATGCACTGGATTGAGAGCTGCTGACCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp GAGGGTCAGCAGCTCTCAATCCAGTGCATTTTCCTTTGTCGTGTGTTTTATACCAGCAGACCCAGGAACTaGAGAAGGATGCAGCCACCC +
Preference number: 4 (lower is better)
Translates to: EGQQLSIQCIFLCRVFYTSRPRN*RRMQPP
Trigger: GGGTGGCTGCATCCTTCTCCAGTTCCTGGGTCTGCT...GGTATAAAACACACGACAAAGGAAAATGCACTGGATTGAGAGCTGCTGACCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCGCATCAATGTGTGAGTaGTACACCCAGGTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCASMCE*YTQVRQ
Trigger: CTGCCTGACCTGGGTGTACCACTCACACATTGATGC...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp TCTAGGGAGCCTAAGGAGAGGGTGCATTGTGTTCTTACAGGTTTAGTTCTGTTGTTGCCAGGTTGTTCCTaGGAGGGCACTGTGACTGCG +
Preference number: 4 (lower is better)
Translates to: SREPKERVHCVLTGLVLLLPGCS*EGTVTA
Trigger: CGCAGTCACAGTGCCCTCCCAGGAACAACCTGGCAA...CAACAGAACTAAACCTGTAAGAACACAATGCACCCTCTCCTTAGGCTCCCTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp GTAATGGATGCTTGCCCTGCTTCTGTGCAATTGTGCAGCCTCCCACGTATGAACTCCAAGATGGGCTTCTaGATCAGAGGGCATCTTTCT +
Preference number: 4 (lower is better)
Translates to: VMDACPASVQLCSLPRMNSKMGF*IRGHLS
Trigger: AGAAAGATGCCCTCTGATTCAGAAGCCCATCTTGGA...GTTCATACGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp GAGGGTCAGCAGCTCTCAATCCAGTGCATTTTCCTTTGTCGTGTGTTTTATACCTCCCCCACCTCAGCATaGATCATTGGTCCCAGGAGT +
Preference number: 4 (lower is better)
Translates to: EGQQLSIQCIFLCRVFYTSPTSA*IIGPRS
Trigger: ACTCCTGGGACCAATGATTCATGCTGAGGTGGGGGA...GGTATAAAACACACGACAAAGGAAAATGCACTGGATTGAGAGCTGCTGACCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp GAGGGTCAGCAGCTCTCAATCCAGTGCATTTTCCTTTGTCGTGTGTTTTATACCTCGGACACATGGCAGTaGAGAAGCCATGTTCCTGGG +
Preference number: 4 (lower is better)
Translates to: EGQQLSIQCIFLCRVFYTSDTWQ*RSHVPG
Trigger: CCCAGGAACATGGCTTCTTCACTGCCATGTGTCCGA...GGTATAAAACACACGACAAAGGAAAATGCACTGGATTGAGAGCTGCTGACCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp GTAATGGATGCTTGCCCTGCTTCTGTGCAATTGTGCAGCCTCCCACGTATGAACATCTGCTGGAGCAGGTaGATATTCTTCTCTCACTGG +
Preference number: 4 (lower is better)
Translates to: VMDACPASVQLCSLPRMNICWSR*IFFSHW
Trigger: CCAGTGAGAGAAGAATATGCACCTGCTCCAGCAGAT...GTTCATACGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp GTAATGGATGCTTGCCCTGCTTCTGTGCAATTGTGCAGCCTCCCACGTATGAACCCCATTCCAATCAAGTaGCAGGAAACTCTGTCCTTC +
Preference number: 4 (lower is better)
Translates to: VMDACPASVQLCSLPRMNPIPIK*QETLSF
Trigger: GAAGGACAGAGTTTCCTGGCACTTGATTGGAATGGG...GTTCATACGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp TCAATAAGCCACGCAATCACACTGTCAGTAGTTAGCAGGCTGGAATTCAGAGTCCCTCCTGCGTCCAAGTaGTGCTTTTCGAACTCCCAG +
Preference number: 4 (lower is better)
Translates to: SISHAITLSVVSRLEFRVPPASK*CFSNSQ
Trigger: CTGGGAGTTCGAAAAGCAGCACTTGGACGCAGGAGG...GACTCTGAATTCCAGCCTGCTAACTACTGACAGTGTGATTGCGTGGCTTATTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCAATAGAGCTCTTCCTTaGCAGGTTGTTCCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCNRALP*QVVPGR
Trigger: CCTCCCAGGAACAACCTGGCAAGGAAGAGCTCTATT...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCAGTAGCTCCCATCTGTaGAGTGTCTATAAACCGCCT +
Preference number: 4 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCSSSHL*SVYKPP
Trigger: AGGCGGTTTATAGACACTTCACAGATGGGAGCTACT...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp GTAATGGATGCTTGCCCTGCTTCTGTGCAATTGTGCAGCCTCCCACGTATGAACTCAAAGTCGTCTGTGTaGTTGAAATCCCGTGGATCT +
Preference number: 4 (lower is better)
Translates to: VMDACPASVQLCSLPRMNSKSSV*LKSRGS
Trigger: AGATCCACGGGATTTCAAGCACACAGACGACTTTGA...GTTCATACGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp AGAGACAGGGAGCCTCTGGCTTATGACGAAGAAGTCAAGCCTGCTTCTCCACTGTGGCATGCATTTTGTTaGTCTCTTCAAAGTCGTCTG +
Preference number: 4 (lower is better)
Translates to: RDREPLAYDEEVKPASPLWHAFC*SLQSRL
Trigger: CAGACGACTTTGAAGAGAGCAACAAAATGCATGCCA...CAGTGGAGAAGCAGGCTTGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp AGACAGACAGATGTCCACGGCACTCTAATGTTTTCTAGAAGCTACACATCTAGAAAGGATGACCAGGGCTaGCTTGGCTCCTCTTGGACG +
Preference number: 4 (lower is better)
Translates to: RQTDVHGTLMFSRSYTSRKDDQG*LGSSWT
Trigger: CGTCCAAGAGGAGCCAAGGCAGCCCTGGTCATCCTT...TCTAGATGTGTAGCTTCTAGAAAACATTAGAGTGCCGTGGACATCTGTCTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp TCTAGGGAGCCTAAGGAGAGGGTGCATTGTGTTCTTACAGGTTTAGTTCTGTTGCCCATGGAATACAATTaGGATCAGAGGGCCCAGGAC +
Preference number: 4 (lower is better)
Translates to: SREPKERVHCVLTGLVLLPMEYN*DQRAQD
Trigger: GTCCTGGGCCCTCTGATCCCAATTGTATTCCATGGG...CAACAGAACTAAACCTGTAAGAACACAATGCACCCTCTCCTTAGGCTCCCTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCCGCAAGTTTGTCTTCTaGGAAACTCTTCCCGGTAAT +
Preference number: 4 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCRKFVF*ETLPGN
Trigger: ATTACCGGGAAGAGTTTCTCAGAAGACAAACTTGCG...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp AGAGACAGGGAGCCTCTGGCTTATGACGAAGAAGTCAAGCCTGCTTCTCCACTGGCATCTTTCTTCTACTaGAAGTGGCATCAACATACT +
Preference number: 4 (lower is better)
Translates to: RDREPLAYDEEVKPASPLASFFY*KWHQHT
Trigger: AGTATGTTGATGCCACTTTCAGTAGAAGAAAGATGC...CAGTGGAGAAGCAGGCTTGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp GAGGGTCAGCAGCTCTCAATCCAGTGCATTTTCCTTTGTCGTGTGTTTTATACCTGTTGCCACAGCTGCTaGTCTCATAGATCTGACCCA +
Preference number: 4 (lower is better)
Translates to: EGQQLSIQCIFLCRVFYTCCHSC*SHRSDP
Trigger: TGGGTCAGATCTATGAGATCAGCAGCTGTGGCAACA...GGTATAAAACACACGACAAAGGAAAATGCACTGGATTGAGAGCTGCTGACCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp GTAATGGATGCTTGCCCTGCTTCTGTGCAATTGTGCAGCCTCCCACGTATGAACGTCATCCAGATACCATaGCTCATTCTCATTGAAGAC +
Preference number: 4 (lower is better)
Translates to: VMDACPASVQLCSLPRMNVIQIP*LILIED
Trigger: GTCTTCAATGAGAATGAGTCATGGTATCTGGATGAC...GTTCATACGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp GTAATGGATGCTTGCCCTGCTTCTGTGCAATTGTGCAGCCTCCCACGTATGAACAACAGCTCAATGGTTTaGAATGTCCCAGGAAAGAGA +
Preference number: 4 (lower is better)
Translates to: VMDACPASVQLCSLPRMNNSSMV*NVPGKR
Trigger: TCTCTTTCCTGGGACATTTCAAACCATTGAGCTGTT...GTTCATACGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp GAGGGTCAGCAGCTCTCAATCCAGTGCATTTTCCTTTGTCGTGTGTTTTATACCAGCCATGTTCCTGGGTaGTCAGCAAACAGCTCAATG +
Preference number: 4 (lower is better)
Translates to: EGQQLSIQCIFLCRVFYTSHVPG*SANSSM
Trigger: CATTGAGCTGTTTGCTGATCACCCAGGAACATGGCT...GGTATAAAACACACGACAAAGGAAAATGCACTGGATTGAGAGCTGCTGACCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp AGACAGACAGATGTCCACGGCACTCTAATGTTTTCTAGAAGCTACACATCTAGAGTCTGGCTGCATGTATaGCGTTGTGGCCATATGGGG +
Preference number: 4 (lower is better)
Translates to: RQTDVHGTLMFSRSYTSRVWLHV*RCGHMG
Trigger: CCCCATATGGCCACAACGGCATACATGCAGCCAGAC...TCTAGATGTGTAGCTTCTAGAAAACATTAGAGTGCCGTGGACATCTGTCTGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp TCAATAAGCCACGCAATCACACTGTCAGTAGTTAGCAGGCTGGAATTCAGAGTCATGCCTCTCGTGAAGTaGGGTAAGGTGGAACAGAAC +
Preference number: 4 (lower is better)
Translates to: SISHAITLSVVSRLEFRVMPLVK*GKVEQN
Trigger: GTTCTGTTCCACCTTACCCCACTTCACGAGAGGCAT...GACTCTGAATTCCAGCCTGCTAACTACTGACAGTGTGATTGCGTGGCTTATTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCTGGAACAGAACACCTTaGAAATACCTGAATGGTCTG +
Preference number: 4 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCWNRTP*KYLNGL
Trigger: CAGACCATTCAGGTATTTTCAAGGTGTTCTGTTCCA...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCATGACTCATTCTCATTaGAGACCAGGAACAACAGTG +
Preference number: 4 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCMTHSH*RPGTTV
Trigger: CACTGTTGTTCCTGGTCTTCAATGAGAATGAGTCAT...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCGACCAGGAACAACAGTaGAAACTCATAGTCAACATC +
Preference number: 4 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCDQEQQ*KLIVNI
Trigger: GATGTTGACTATGAGTTTGCACTGTTGTTCCTGGTC...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp TTGTCTTTAACAAGCAGAGAATGCAGGATTTTAAAGGTCCTTTCTCCTCCTTGTGGTGAAGGTTTCACCTaGCTTGACGTGAGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: LSLTSRECRILKVLSPPCGEGFT*LDVSPW
Trigger: CCAGGGGCTCACGTCAAGCCAGGTGAAACCTTCACC...ACAAGGAGGAGAAAGGACCTTTAAAATCCTGCATTCTCTGCTTGTTAAAGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR CAA 72 bp ACAGTCTTTGACATACTAAGGATAAGTAATGGATGCTaGCCCTGCTTCTGTGCAATTGTGCAGCCTCCCACG +
Preference number: 4 (lower is better)
Translates to: TVFDILRISNGC*PCFCAIVQPPT
Trigger: CGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTACTTATCCTTAGTATGTCAAAGACTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp TTGTCTTTAACAAGCAGAGAATGCAGGATTTTAAAGGTCCTTTCTCCTCCTTGTAGGTTTCACCTGGCTTaGCGTGAGCCCCTGGTTTCA +
Preference number: 4 (lower is better)
Translates to: LSLTSRECRILKVLSPPCRFHLA*REPLVS
Trigger: TGAAACCAGGGGCTCACGTCAAGCCAGGTGAAACCT...ACAAGGAGGAGAAAGGACCTTTAAAATCCTGCATTCTCTGCTTGTTAAAGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp AGACAGACAGATGTCCACGGCACTCTAATGTTTTCTAGAAGCTACACATCTAGAGCAGTTGGCATCTGCTaGAGCAGGTGCATATTCTTC +
Preference number: 4 (lower is better)
Translates to: RQTDVHGTLMFSRSYTSRAVGIC*SRCIFF
Trigger: GAAGAATATGCACCTGCTCCAGCAGATGCCAACTGC...TCTAGATGTGTAGCTTCTAGAAAACATTAGAGTGCCGTGGACATCTGTCTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp TCAATAAGCCACGCAATCACACTGTCAGTAGTTAGCAGGCTGGAATTCAGAGTCAGGTGGTCACTGACTTaGCAGGTTATCATCCATTTC +
Preference number: 4 (lower is better)
Translates to: SISHAITLSVVSRLEFRVRWSLT*QVIIHF
Trigger: GAAATGGATGATAACCTGCCAAGTCAGTGACCACCT...GACTCTGAATTCCAGCCTGCTAACTACTGACAGTGTGATTGCGTGGCTTATTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp GAGGGTCAGCAGCTCTCAATCCAGTGCATTTTCCTTTGTCGTGTGTTTTATACCTCCCTCGTAGGTGGATaGTGTTGCCTTGGAAATAAA +
Preference number: 4 (lower is better)
Translates to: EGQQLSIQCIFLCRVFYTSLVGG*CCLGNK
Trigger: TTTATTTCCAAGGCAACACCATCCACCTACGAGGGA...GGTATAAAACACACGACAAAGGAAAATGCACTGGATTGAGAGCTGCTGACCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp GTAATGGATGCTTGCCCTGCTTCTGTGCAATTGTGCAGCCTCCCACGTATGAACCGTCTTGGTAGAATATaGAATCCTGTTGTCTATGTT +
Preference number: 4 (lower is better)
Translates to: VMDACPASVQLCSLPRMNRLGRI*NPVVYV
Trigger: AACATAGACAACAGGATTCCATATTCTACCAAGACG...GTTCATACGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAAGGAACTGGAGAAGGATaGAGCCACCCGGCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: EIITFIEDADVEKCPLNEGTGEG*SHPAAS
Trigger: TGAAGCAGCCGGGTGGCTGCATCCTTCTCCAGTTCC...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCTGTCCTTCTTGCACATaGTCAGGCCTGGCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: QLLVVASFYLRLWLLSISCPSCT*SGLAGC
Trigger: GCAGCCAGCCAGGCCTGAGCATGTGCAAGAAGGACA...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp TTGTCTTTAACAAGCAGAGAATGCAGGATTTTAAAGGTCCTTTCTCCTCCTTGTTCCCACCTATCCTGTTaGGCCCTCGCTCCAGAAATA +
Preference number: 4 (lower is better)
Translates to: LSLTSRECRILKVLSPPCSHLSC*ALAPEI
Trigger: TATTTCTGGAGCGAGGGCCCAACAGGATAGGTGGGA...ACAAGGAGGAGAAAGGACCTTTAAAATCCTGCATTCTCTGCTTGTTAAAGACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCCGGGCTGACGCTTTCTaGCACTGTCCACCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: QLLVVASFYLRLWLLSISRADAF*HCPPVG
Trigger: ACCTACAGGTGGACAGTGCCAGAAAGCGTCAGCCCG...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp GAGGGTCAGCAGCTCTCAATCCAGTGCATTTTCCTTTGTCGTGTGTTTTATACCTTGAAAATACCTGAATaGTCTGGCTGCATGTATGCC +
Preference number: 4 (lower is better)
Translates to: EGQQLSIQCIFLCRVFYTLKIPE*SGCMYA
Trigger: GGCATACATGCAGCCAGACCATTCAGGTATTTTCAA...GGTATAAAACACACGACAAAGGAAAATGCACTGGATTGAGAGCTGCTGACCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp GAGGGTCAGCAGCTCTCAATCCAGTGCATTTTCCTTTGTCGTGTGTTTTATACCCAGCAAACAGCTCAATaGTTTGAAATGTCCCAGGAA +
Preference number: 4 (lower is better)
Translates to: EGQQLSIQCIFLCRVFYTQQTAQ*FEMSQE
Trigger: TTCCTGGGACATTTCAAACCATTGAGCTGTTTGCTG...GGTATAAAACACACGACAAAGGAAAATGCACTGGATTGAGAGCTGCTGACCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp AGACAGACAGATGTCCACGGCACTCTAATGTTTTCTAGAAGCTACACATCTAGAAGTCGTCTGTGTGCTTaGAATCCCGTGGATCTTTAT +
Preference number: 4 (lower is better)
Translates to: RQTDVHGTLMFSRSYTSRSRLCA*NPVDLY
Trigger: ATAAAGATCCACGGGATTTCAAGCACACAGACGACT...TCTAGATGTGTAGCTTCTAGAAAACATTAGAGTGCCGTGGACATCTGTCTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCCATTACCCCTGCAGTTaGCCACGCTGTACTGTCCCA +
Preference number: 4 (lower is better)
Translates to: QLLVVASFYLRLWLLSISHYPCS*PRCTVP
Trigger: TGGGACAGTACAGCGTGGGCAACTGCAGGGGTAATG...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAACCTGAATGGTCTGGCTaGATGTATGCCGTTGTGGCC +
Preference number: 4 (lower is better)
Translates to: EIITFIEDADVEKCPLNEPEWSG*MYAVVA
Trigger: GGCCACAACGGCATACATGCAGCCAGACCATTCAGG...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp GAGGGTCAGCAGCTCTCAATCCAGTGCATTTTCCTTTGTCGTGTGTTTTATACCATCTTGTTGCTCCTCTaGAAAACAGCATCACTTTTG +
Preference number: 4 (lower is better)
Translates to: EGQQLSIQCIFLCRVFYTILLLL*KTASLL
Trigger: CAAAAGTGATGCTGTTTTCCAGAGGAGCAACAAGAT...GGTATAAAACACACGACAAAGGAAAATGCACTGGATTGAGAGCTGCTGACCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp AGACAGACAGATGTCCACGGCACTCTAATGTTTTCTAGAAGCTACACATCTAGACTTTGTCAGCTTTGTTaGCAAAGGTCACTAGCAGGA +
Preference number: 4 (lower is better)
Translates to: RQTDVHGTLMFSRSYTSRLCQLC*QRSLAG
Trigger: TCCTGCTAGTGACCTTTGCCAACAAAGCTGACAAAG...TCTAGATGTGTAGCTTCTAGAAAACATTAGAGTGCCGTGGACATCTGTCTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp TTGTCTTTAACAAGCAGAGAATGCAGGATTTTAAAGGTCCTTTCTCCTCCTTGTGCATGTATGCCGTTGTaGCCATATGGGGAAACAGAG +
Preference number: 4 (lower is better)
Translates to: LSLTSRECRILKVLSPPCACMPL*PYGETE
Trigger: CTCTGTTTCCCCATATGGCCACAACGGCATACATGC...ACAAGGAGGAGAAAGGACCTTTAAAATCCTGCATTCTCTGCTTGTTAAAGACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR CAA 72 bp AGCAGGCTGGAATTCAGAGTCATTTGTGTCCACTGTTaGACGATGCGGTCAAGCAAACTACAAACAACTATT +
Preference number: 4 (lower is better)
Translates to: SRLEFRVICVHC*TMRSSKLQTTI
Trigger: AATAGTTGTTTGTAGTTTGCTTGACCGCATCGTCAAACAGTGGACACAAATGACTCTGAATTCCAGCCTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAACTTGCAGGTGGTCACTaGCTTGGCAGGTTATCATCC +
Preference number: 4 (lower is better)
Translates to: EIITFIEDADVEKCPLNELAGGH*LGRLSS
Trigger: GGATGATAACCTGCCAAGTCAGTGACCACCTGCAAG...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCTCACCTGGCTTGACGTaGGCCCCTGGTTTCAGAAAT +
Preference number: 4 (lower is better)
Translates to: QLLVVASFYLRLWLLSISSPGLT*APGFRN
Trigger: ATTTCTGAAACCAGGGGCTCACGTCAAGCCAGGTGA...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
3UTR CAA 72 bp TTAAAGGTCCTTTCTCCTCCTTGTCAATCAGTTGCATaGATATATGCCTCCTGCTACCCCTCATATGATGAA +
Preference number: 4 (lower is better)
Translates to: LKVLSPPCQSVA*IYASCYPSYDE
Trigger: TTCATCATATGAGGGGTAGCAGGAGGCATATATCAATGCAACTGATTGACAAGGAGGAGAAAGGACCTTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAAGATGTCACCCACCTCTaGTTTGATGACTGGACCAAG +
Preference number: 4 (lower is better)
Translates to: EIITFIEDADVEKCPLNEDVTHL*FDDWTK
Trigger: CTTGGTCCAGTCATCAAAGCAGAGGTGGGTGACATC...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp AGACAGACAGATGTCCACGGCACTCTAATGTTTTCTAGAAGCTACACATCTAGATTGGACGCAGATTCTTaGCAAAGAAATAGAGCTCTT +
Preference number: 4 (lower is better)
Translates to: RQTDVHGTLMFSRSYTSRLDADS*QRNRAL
Trigger: AAGAGCTCTATTTCTTTGGCAAGAATCTGCGTCCAA...TCTAGATGTGTAGCTTCTAGAAAACATTAGAGTGCCGTGGACATCTGTCTGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAAATACCAGCTTGCAGGTaGTCACTGACTTGGCAGGTT +
Preference number: 4 (lower is better)
Translates to: EIITFIEDADVEKCPLNEIPACR*SLTWQV
Trigger: AACCTGCCAAGTCAGTGACCACCTGCAAGCTGGTAT...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp AGACAGACAGATGTCCACGGCACTCTAATGTTTTCTAGAAGCTACACATCTAGAAGTTTTGATTTCTCCTaGCTTTGTGACAGGCACATT +
Preference number: 4 (lower is better)
Translates to: RQTDVHGTLMFSRSYTSRSFDFS*LCDRHI
Trigger: AATGTGCCTGTCACAAAGCCAGGAGAAATCAAAACT...TCTAGATGTGTAGCTTCTAGAAAACATTAGAGTGCCGTGGACATCTGTCTGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp TTGTCTTTAACAAGCAGAGAATGCAGGATTTTAAAGGTCCTTTCTCCTCCTTGTATTTGGAGCTGCATCTaGTGCTTTGTCATAGAACAC +
Preference number: 4 (lower is better)
Translates to: LSLTSRECRILKVLSPPCIWSCI*CFVIEH
Trigger: GTGTTCTATGACAAAGCATCAGATGCAGCTCCAAAT...ACAAGGAGGAGAAAGGACCTTTAAAATCCTGCATTCTCTGCTTGTTAAAGACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAACGCCATGGGGTAAGATaGTGTAGACTTTGTCAGCTT +
Preference number: 4 (lower is better)
Translates to: EIITFIEDADVEKCPLNERHGVR*CRLCQL
Trigger: AAGCTGACAAAGTCTACAGCATCTTACCCCATGGCG...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp TTGTCTTTAACAAGCAGAGAATGCAGGATTTTAAAGGTCCTTTCTCCTCCTTGTGTAGGTGGATGGTGTTaGCTTGGAAATAAACTCCAT +
Preference number: 4 (lower is better)
Translates to: LSLTSRECRILKVLSPPCVGGWC*LGNKLH
Trigger: ATGGAGTTTATTTCCAAGGCAACACCATCCACCTAC...ACAAGGAGGAGAAAGGACCTTTAAAATCCTGCATTCTCTGCTTGTTAAAGACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCCTTGACGTGAGCCCCTaGTTTCAGAAATCCATCTAC +
Preference number: 4 (lower is better)
Translates to: QLLVVASFYLRLWLLSISLDVSP*FQKSIY
Trigger: GTAGATGGATTTCTGAAACCAGGGGCTCACGTCAAG...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp TTGTCTTTAACAAGCAGAGAATGCAGGATTTTAAAGGTCCTTTCTCCTCCTTGTCAGCATGCATCCGATTaGATTTCACAAACTCCTTGT +
Preference number: 4 (lower is better)
Translates to: LSLTSRECRILKVLSPPCQHASD*ISQTPC
Trigger: ACAAGGAGTTTGTGAAATCCAATCGGATGCATGCTG...ACAAGGAGGAGAAAGGACCTTTAAAATCCTGCATTCTCTGCTTGTTAAAGACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAAAAGAAGCCATGTTCCTaGGTGATCAGCAAACAGCTC +
Preference number: 4 (lower is better)
Translates to: EIITFIEDADVEKCPLNEKKPCS*VISKQL
Trigger: GAGCTGTTTGCTGATCACCCAGGAACATGGCTTCTT...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCCACCTTGAAAATACCTaGATGGTCTGGCTGCATGTA +
Preference number: 4 (lower is better)
Translates to: QLLVVASFYLRLWLLSISHLENT*MVWLHV
Trigger: TACATGCAGCCAGACCATTCAGGTATTTTCAAGGTG...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR GCA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCGGATTAGTGCAGAATTaGTTGATGTTGTCATCCAGA +
Preference number: 4 (lower is better)
Translates to: QLLVVASFYLRLWLLSISGLVQN*LMLSSR
Trigger: TCTGGATGACAACATCAAGCAATTCTGCACTAATCC...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAAATATTCTTCTCTCACTaGCCAGACATAGGTGTAGTT +
Preference number: 4 (lower is better)
Translates to: EIITFIEDADVEKCPLNEIFFSH*PDIGVV
Trigger: AACTACACCTATGTCTGGCCAGTGAGAGAAGAATAT...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR TCA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAATCTCATCAAAGACTGTaGACAGTAGGTAAAATTCCT +
Preference number: 4 (lower is better)
Translates to: EIITFIEDADVEKCPLNESHQRL*TVGKIP
Trigger: AGGAATTTTACCTACTGTTCACAGTCTTTGATGAGA...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CCA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCGTGCTTGAAATCCCGTaGATCTTTATTGAGATACTT +
Preference number: 4 (lower is better)
Translates to: QLLVVASFYLRLWLLSISVLEIP*IFIEIL
Trigger: AAGTATCTCAATAAAGATCCACGGGATTTCAAGCAC...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 90 bp AGCGCCGCTGTTGACCCTGCACCTTTGGGTGAGGAGCATTACCCCTaGAGTTGCCCACGCTGTACTGTCCCAGCATACCAGCTTGCAGGT +
Preference number: 5 (lower is better)
Translates to: SAAVDPAPLGEEHYP*SCPRCTVPAYQLAG
Trigger: ACCTGCAAGCTGGTATGCTGGGACAGTACAGCGTGGGCAACTGCAGGGGTAATGCTCCTCACCCAAAGGTGCAGGGTCAACAGCGGCGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 90 bp ACTGGACTTCCCTGTAAGCCATCTGCCTCCTTGAAGATCGGAGTCTaGGGGCGAGAACCACGGTGGCCACTAGAAGGAGGAGTCCCAGGA +
Preference number: 5 (lower is better)
Translates to: TGLPCKPSASLKIGV*GREPRWPLEGGVPG
Trigger: TCCTGGGACTCCTCCTTCTAGTGGCCACCGTGGTTCTCGCCCTCAGACTCCGATCTTCAAGGAGGCAGATGGCTTACAGGGAAGTCCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 90 bp TTTTTCAGCCGCTATGAAGTAGCGCCGCTGTTGACCCTGCACCTTTaGGTGAGGAGCATTACCCCTGCAGTTGCCCACGCTGTACTGTCC +
Preference number: 5 (lower is better)
Translates to: FFSRYEVAPLLTLHL*VRSITPAVAHAVLS
Trigger: GGACAGTACAGCGTGGGCAACTGCAGGGGTAATGCTCCTCACCCAAAGGTGCAGGGTCAACAGCGGCGCTACTTCATAGCGGCTGAAAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp AGAGACAGGGAGCCTCTGGCTTATGACGAAGAAGTCAAGCCTGCTTCTCCACTGACCCAGGTCAGGCAGTaGGCATCTGCTGGAGCAGGT +
Preference number: 5 (lower is better)
Translates to: RDREPLAYDEEVKPASPLTQVRQ*ASAGAG
Trigger: ACCTGCTCCAGCAGATGCCAACTGCCTGACCTGGGT...CAGTGGAGAAGCAGGCTTGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp GTAATGGATGCTTGCCCTGCTTCTGTGCAATTGTGCAGCCTCCCACGTATGAACATGACCAGGGCTGCCTaGGCTCCTCTTGGACGCAGA +
Preference number: 5 (lower is better)
Translates to: VMDACPASVQLCSLPRMNMTRAA*APLGRR
Trigger: TCTGCGTCCAAGAGGAGCCAAGGCAGCCCTGGTCAT...GTTCATACGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 90 bp CATAGCCTTGGGGACCATAATCCCAGAGGACTTTTTCAGCCGCTATaGAGTAGCGCCGCTGTTGACCCTGCACCTTTGGGTGAGGAGCAT +
Preference number: 5 (lower is better)
Translates to: HSLGDHNPRGLFQPL*SSAAVDPAPLGEEH
Trigger: ATGCTCCTCACCCAAAGGTGCAGGGTCAACAGCGGCGCTACTTCATAGCGGCTGAAAAAGTCCTCTGGGATTATGGTCCCCAAGGCTATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 90 bp TTACCCCTGCAGTTGCCCACGCTGTACTGTCCCAGCATACCAGCTTaGAGGTGGTCACTGACTTGGCAGGTTATCATCCATTTCCCAGGA +
Preference number: 5 (lower is better)
Translates to: LPLQLPTLYCPSIPA*RWSLTWQVIIHFPG
Trigger: TCCTGGGAAATGGATGATAACCTGCCAAGTCAGTGACCACCTGCAAGCTGGTATGCTGGGACAGTACAGCGTGGGCAACTGCAGGGGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp AGAGACAGGGAGCCTCTGGCTTATGACGAAGAAGTCAAGCCTGCTTCTCCACTGGAAACTCTGTCCTTCTaGCACATGCTCAGGCCTGGC +
Preference number: 5 (lower is better)
Translates to: RDREPLAYDEEVKPASPLETLSF*HMLRPG
Trigger: GCCAGGCCTGAGCATGTGCAAGAAGGACAGAGTTTC...CAGTGGAGAAGCAGGCTTGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 90 bp TTCTCCTGGCTTTGTGACAGGCACATTAAGGAGTTTTCCATTGTTTaGGTCCTCCACACCTTGGGCTGCAATGGAGTAGGGCCGGCTGGC +
Preference number: 5 (lower is better)
Translates to: FSWLCDRHIKEFSIV*VLHTLGCNGVGPAG
Trigger: GCCAGCCGGCCCTACTCCATTGCAGCCCAAGGTGTGGAGGACTCAAACAATGGAAAACTCCTTAATGTGCCTGTCACAAAGCCAGGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 90 bp GAGTCCCAGGATGAAAAGGATGACCAGGGCTGCCTTGGCTCCTCTTaGACGCAGATTCTTGCCAAAGAAATAGAGCTCTTCCTTGCCAGG +
Preference number: 5 (lower is better)
Translates to: ESQDEKDDQGCLGSS*TQILAKEIELFLAR
Trigger: CCTGGCAAGGAAGAGCTCTATTTCTTTGGCAAGAATCTGCGTCCAAGAGGAGCCAAGGCAGCCCTGGTCATCCTTTTCATCCTGGGACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 90 bp TGCCCACGCTGTACTGTCCCAGCATACCAGCTTGCAGGTGGTCACTaGCTTGGCAGGTTATCATCCATTTCCCAGGATTCTCCACTATCA +
Preference number: 5 (lower is better)
Translates to: CPRCTVPAYQLAGGH*LGRLSSISQDSPLS
Trigger: TGATAGTGGAGAATCCTGGGAAATGGATGATAACCTGCCAAGTCAGTGACCACCTGCAAGCTGGTATGCTGGGACAGTACAGCGTGGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 90 bp ACAGAGCCAGGGAGTCACGATGAGTCCCTCGTAGGTGGATGGTGTTaGCTTGGAAATAAACTCCATGCATATCTGTGTCGGTGCCCATTC +
Preference number: 5 (lower is better)
Translates to: TEPGSHDESLVGGWC*LGNKLHAYLCRCPF
Trigger: GAATGGGCACCGACACAGATATGCATGGAGTTTATTTCCAAGGCAACACCATCCACCTACGAGGGACTCATCGTGACTCCCTGGCTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 90 bp CTTGCCAGGTTGTTCCTGGGAGGGCACTGTGACTGCGTGAGATCCTaGTCCAGAAGGCGTCTTGGTAGAATATGGAATCCTGTTGTCTAT +
Preference number: 5 (lower is better)
Translates to: LARLFLGGHCDCVRS*SRRRLGRIWNPVVY
Trigger: ATAGACAACAGGATTCCATATTCTACCAAGACGCCTTCTGGAGCAGGATCTCACGCAGTCACAGTGCCCTCCCAGGAACAACCTGGCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 90 bp ATAGAGCTCTTCCTTGCCAGGTTGTTCCTGGGAGGGCACTGTGACTaGGTGAGATCCTGCTCCAGAAGGCGTCTTGGTAGAATATGGAAT +
Preference number: 5 (lower is better)
Translates to: IELFLARLFLGGHCD*VRSCSRRRLGRIWN
Trigger: ATTCCATATTCTACCAAGACGCCTTCTGGAGCAGGATCTCACGCAGTCACAGTGCCCTCCCAGGAACAACCTGGCAAGGAAGAGCTCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 90 bp GCTGACGCTTTCTGGCACTGTCCACCTGTAGGTGAAGGTTTCACCTaGCTTGACGTGAGCCCCTGGTTTCAGAAATCCATCTACATTTGG +
Preference number: 5 (lower is better)
Translates to: ADAFWHCPPVGEGFT*LDVSPWFQKSIYIW
Trigger: CCAAATGTAGATGGATTTCTGAAACCAGGGGCTCACGTCAAGCCAGGTGAAACCTTCACCTACAGGTGGACAGTGCCAGAAAGCGTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 90 bp AATCAAGTGCCAGGAAACTCTGTCCTTCTTGCACATGCTCAGGCCTaGCTGGCTGCCGTACATGTAGCCGTTAACAGCATGCATCCGATT +
Preference number: 5 (lower is better)
Translates to: NQVPGNSVLLAHAQA*LAAVHVAVNSMHPI
Trigger: AATCGGATGCATGCTGTTAACGGCTACATGTACGGCAGCCAGCCAGGCCTGAGCATGTGCAAGAAGGACAGAGTTTCCTGGCACTTGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCGTAGCTGGAAACAGGTaGACAACATCTGCCCGGTGC +
Preference number: 5 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCVAGNR*TTSARC
Trigger: GCACCGGGCAGATGTTGTCAACCTGTTTCCAGCTAC...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 90 bp GGTAAGGTGGAACAGAACACCTTGAAAATACCTGAATGGTCTGGCTaGATGTATGCCGTTGTGGCCATATGGGGAAACAGAGCCAGGGAG +
Preference number: 5 (lower is better)
Translates to: GKVEQNTLKIPEWSG*MYAVVAIWGNRARE
Trigger: CTCCCTGGCTCTGTTTCCCCATATGGCCACAACGGCATACATGCAGCCAGACCATTCAGGTATTTTCAAGGTGTTCTGTTCCACCTTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp GTAATGGATGCTTGCCCTGCTTCTGTGCAATTGTGCAGCCTCCCACGTATGAACTCACCCACCTCTGCTTaGATGACTGGACCAAGGATT +
Preference number: 5 (lower is better)
Translates to: VMDACPASVQLCSLPRMNSPTSA*MTGPRI
Trigger: AATCCTTGGTCCAGTCATCAAAGCAGAGGTGGGTGA...GTTCATACGTGGGAGGCTGCACAATTGCACAGAAGCAGGGCAAGCATCCATTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 90 bp TGTGACTGCGTGAGATCCTGCTCCAGAAGGCGTCTTGGTAGAATATaGAATCCTGTTGTCTATGTTCCTGAGGACAGTGTAGGTGGTCTC +
Preference number: 5 (lower is better)
Translates to: CDCVRSCSRRRLGRI*NPVVYVPEDSVGGL
Trigger: GAGACCACCTACACTGTCCTCAGGAACATAGACAACAGGATTCCATATTCTACCAAGACGCCTTCTGGAGCAGGATCTCACGCAGTCACA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TCAATAAGCCACGCAATCACACTGTCAGTAGTTAGCAGGCTGGAATTCAGAGTCTCAGAAGGGTCCCTGTaGCCACAGCTGCTGATCTCA +
Preference number: 5 (lower is better)
Translates to: SISHAITLSVVSRLEFRVSEGSL*PQLLIS
Trigger: TGAGATCAGCAGCTGTGGCAACAGGGACCCTTCTGA...GACTCTGAATTCCAGCCTGCTAACTACTGACAGTGTGATTGCGTGGCTTATTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 90 bp AGTGAACATGATAACAAACTCTCGGTCCACATCAGTCCTCATCCCTaGGTATCTATTCAGTACACCTTCCTTACACACCAGCAGGGGGCC +
Preference number: 5 (lower is better)
Translates to: SEHDNKLSVHISPHP*VSIQYTFLTHQQGA
Trigger: GGCCCCCTGCTGGTGTGTAAGGAAGGTGTACTGAATAGATACTCAGGGATGAGGACTGATGTGGACCGAGAGTTTGTTATCATGTTCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 90 bp TTTCCCAGGATTCTCCACTATCATTTCTGTTGTGAGGAAGGTAGCTaGAAACAGGTTGACAACATCTGCCCGGTGCCCTCTGGTGATGAA +
Preference number: 5 (lower is better)
Translates to: FPRILHYHFCCEEGS*KQVDNICPVPSGDE
Trigger: TTCATCACCAGAGGGCACCGGGCAGATGTTGTCAACCTGTTTCCAGCTACCTTCCTCACAACAGAAATGATAGTGGAGAATCCTGGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 90 bp ACGCTGTACTGTCCCAGCATACCAGCTTGCAGGTGGTCACTGACTTaGCAGGTTATCATCCATTTCCCAGGATTCTCCACTATCATTTCT +
Preference number: 5 (lower is better)
Translates to: TLYCPSIPACRWSLT*QVIIHFPGFSTIIS
Trigger: AGAAATGATAGTGGAGAATCCTGGGAAATGGATGATAACCTGCCAAGTCAGTGACCACCTGCAAGCTGGTATGCTGGGACAGTACAGCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 90 bp CTTAAAGATAATGAGAATGGAGTCCCCCACCTCAGCATGAATCATTaGTCCCAGGAGTTGAAGGTGCTCTTCTTGAGGTGGCCGAGCTTT +
Preference number: 5 (lower is better)
Translates to: LKDNENGVPHLSMNH*SQELKVLFLRWPSF
Trigger: AAAGCTCGGCCACCTCAAGAAGAGCACCTTCAACTCCTGGGACCAATGATTCATGCTGAGGTGGGGGACTCCATTCTCATTATCTTTAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCACTTTGTCAGCTTTGTaGGCAAAGGTCACTAGCAGG +
Preference number: 5 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCTLSAL*AKVTSR
Trigger: CCTGCTAGTGACCTTTGCCAACAAAGCTGACAAAGT...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TCAATAAGCCACGCAATCACACTGTCAGTAGTTAGCAGGCTGGAATTCAGAGTCACCCATGGAATACAATaGGGATCAGAGGGCCCAGGA +
Preference number: 5 (lower is better)
Translates to: SISHAITLSVVSRLEFRVTHGIQ*GSEGPG
Trigger: TCCTGGGCCCTCTGATCCCAATTGTATTCCATGGGT...GACTCTGAATTCCAGCCTGCTAACTACTGACAGTGTGATTGCGTGGCTTATTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp AGAGACAGGGAGCCTCTGGCTTATGACGAAGAAGTCAAGCCTGCTTCTCCACTGCATGACTCATTCTCATaGAAGACCAGGAACAACAGT +
Preference number: 5 (lower is better)
Translates to: RDREPLAYDEEVKPASPLHDSFS*KTRNNS
Trigger: ACTGTTGTTCCTGGTCTTCAATGAGAATGAGTCATG...CAGTGGAGAAGCAGGCTTGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 90 bp CATAGTTCCAGTATTCCTCCACAATCCCAATGTAGTATGTTCTGGTaGCTGCACCAACTAGTCCAAGCAGACCCAGGAACTGGAGAAGGA +
Preference number: 5 (lower is better)
Translates to: HSSSIPPQSQCSMFW*LHQLVQADPGTGEG
Trigger: TCCTTCTCCAGTTCCTGGGTCTGCTTGGACTAGTTGGTGCAGTCACCAGAACATACTACATTGGGATTGTGGAGGAATACTGGAACTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 90 bp GAGCTGCATCTGATGCTTTGTCATAGAACACGCCATGGGGTAAGATaGTGTAGACTTTGTCAGCTTTGTTGGCAAAGGTCACTAGCAGGA +
Preference number: 5 (lower is better)
Translates to: ELHLMLCHRTRHGVR*CRLCQLCWQRSLAG
Trigger: TCCTGCTAGTGACCTTTGCCAACAAAGCTGACAAAGTCTACAGCATCTTACCCCATGGCGTGTTCTATGACAAAGCATCAGATGCAGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 90 bp ATGTCACCCACCTCTGCTTTGATGACTGGACCAAGGATTCCAAGATaGGCTTCTGAATCAGAGGGCATCTTTCTTCTACTGAAAGTGGCA +
Preference number: 5 (lower is better)
Translates to: MSPTSALMTGPRIPR*ASESEGIFLLLKVA
Trigger: TGCCACTTTCAGTAGAAGAAAGATGCCCTCTGATTCAGAAGCCCATCTTGGAATCCTTGGTCCAGTCATCAAAGCAGAGGTGGGTGACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TCTAGGGAGCCTAAGGAGAGGGTGCATTGTGTTCTTACAGGTTTAGTTCTGTTGGCTCCAGAAGGCGTCTaGGTAGAATATGGAATCCTG +
Preference number: 5 (lower is better)
Translates to: SREPKERVHCVLTGLVLLAPEGV*VEYGIL
Trigger: CAGGATTCCATATTCTACCAAGACGCCTTCTGGAGC...CAACAGAACTAAACCTGTAAGAACACAATGCACCCTCTCCTTAGGCTCCCTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 90 bp GGCAGTGAAGAAGCCATGTTCCTGGGTGATCAGCAAACAGCTCAATaGTTTGAAATGTCCCAGGAAAGAGATCATACACATCTTCTCGGT +
Preference number: 5 (lower is better)
Translates to: GSEEAMFLGDQQTAQ*FEMSQERDHTHLLG
Trigger: ACCGAGAAGATGTGTATGATCTCTTTCCTGGGACATTTCAAACCATTGAGCTGTTTGCTGATCACCCAGGAACATGGCTTCTTCACTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TCAATAAGCCACGCAATCACACTGTCAGTAGTTAGCAGGCTGGAATTCAGAGTCTTGAGGGCATGCATCTaGTTGCTCCTCTGGAAAACA +
Preference number: 5 (lower is better)
Translates to: SISHAITLSVVSRLEFRVLRACI*LLLWKT
Trigger: TGTTTTCCAGAGGAGCAACAAGATGCATGCCCTCAA...GACTCTGAATTCCAGCCTGCTAACTACTGACAGTGTGATTGCGTGGCTTATTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TTGTCTTTAACAAGCAGAGAATGCAGGATTTTAAAGGTCCTTTCTCCTCCTTGTGTTGACCCTGCACCTTaGGGTGAGGAGCATTACCCC +
Preference number: 5 (lower is better)
Translates to: LSLTSRECRILKVLSPPCVDPAP*GEEHYP
Trigger: GGGGTAATGCTCCTCACCCAAAGGTGCAGGGTCAAC...ACAAGGAGGAGAAAGGACCTTTAAAATCCTGCATTCTCTGCTTGTTAAAGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp AGAGACAGGGAGCCTCTGGCTTATGACGAAGAAGTCAAGCCTGCTTCTCCACTGTCCCGTGGATCTTTATaGAGATACTTCTTGATATTG +
Preference number: 5 (lower is better)
Translates to: RDREPLAYDEEVKPASPLSRGSL*RYFLIL
Trigger: CAATATCAAGAAGTATCTCAATAAAGATCCACGGGA...CAGTGGAGAAGCAGGCTTGACTTCTTCGTCATAAGCCAGAGGCTCCCTGTCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCAAACAGCTCAATGGTTaGAAATGTCCCAGGAAAGAG +
Preference number: 5 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCKQLNG*KCPRKE
Trigger: CTCTTTCCTGGGACATTTCAAACCATTGAGCTGTTT...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TTGTCTTTAACAAGCAGAGAATGCAGGATTTTAAAGGTCCTTTCTCCTCCTTGTCTCTTCCTTGCCAGGTaGTTCCTGGGAGGGCACTGT +
Preference number: 5 (lower is better)
Translates to: LSLTSRECRILKVLSPPCLFLAR*FLGGHC
Trigger: ACAGTGCCCTCCCAGGAACAACCTGGCAAGGAAGAG...ACAAGGAGGAGAAAGGACCTTTAAAATCCTGCATTCTCTGCTTGTTAAAGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 90 bp ACCGAGCCTTCCAATATTTTCCTCCTATTCTGTTGTCAGCTTGTGTaGAGTACACTGCAGAGTCACTGCCAGATGTATTCAGGGGAAATC +
Preference number: 5 (lower is better)
Translates to: TEPSNIFLLFCCQLV*STLQSHCQMYSGEI
Trigger: GATTTCCCCTGAATACATCTGGCAGTGACTCTGCAGTGTACTTCACACAAGCTGACAACAGAATAGGAGGAAAATATTGGAAGGCTCGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 90 bp GGATTCCAAGATGGGCTTCTGAATCAGAGGGCATCTTTCTTCTACTaGAAGTGGCATCAACATACTCCGTGTACCGAGCCTTCCAATATT +
Preference number: 5 (lower is better)
Translates to: GFQDGLLNQRASFFY*KWHQHTPCTEPSNI
Trigger: AATATTGGAAGGCTCGGTACACGGAGTATGTTGATGCCACTTTCAGTAGAAGAAAGATGCCCTCTGATTCAGAAGCCCATCTTGGAATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 90 bp CACCTCTGCTTTGATGACTGGACCAAGGATTCCAAGATGGGCTTCTaGATCAGAGGGCATCTTTCTTCTACTGAAAGTGGCATCAACATA +
Preference number: 5 (lower is better)
Translates to: HLCFDDWTKDSKMGF*IRGHLSSTESGINI
Trigger: TATGTTGATGCCACTTTCAGTAGAAGAAAGATGCCCTCTGATTCAGAAGCCCATCTTGGAATCCTTGGTCCAGTCATCAAAGCAGAGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 90 bp CATTTCTGTTGTGAGGAAGGTAGCTGGAAACAGGTTGACAACATCTaGCCGGTGCCCTCTGGTGATGAAGGTGTTACCATAAAAATAGAT +
Preference number: 5 (lower is better)
Translates to: HFCCEEGSWKQVDNI*PVPSGDEGVTIKID
Trigger: ATCTATTTTTATGGTAACACCTTCATCACCAGAGGGCACCGGGCAGATGTTGTCAACCTGTTTCCAGCTACCTTCCTCACAACAGAAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp GAGGGTCAGCAGCTCTCAATCCAGTGCATTTTCCTTTGTCGTGTGTTTTATACCCCAAAAAGGAATCCATaGAGGGCATGCATCTTGTTG +
Preference number: 5 (lower is better)
Translates to: EGQQLSIQCIFLCRVFYTPKRNP*RACILL
Trigger: CAACAAGATGCATGCCCTCAATGGATTCCTTTTTGG...GGTATAAAACACACGACAAAGGAAAATGCACTGGATTGAGAGCTGCTGACCCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TTAGGTCCTACTTGTTCACCTGGACATTCAAGTGACCCACCACAAAGGCAGTGCGATTTCACAAACTCCTaGTCTTCTTTGTCAACACTG +
Preference number: 5 (lower is better)
Translates to: LGPTCSPGHSSDPPQRQCDFTNS*SSLSTL
Trigger: CAGTGTTGACAAAGAAGACAAGGAGTTTGTGAAATC...GCACTGCCTTTGTGGTGGGTCACTTGAATGTCCAGGTGAACAAGTAGGACCTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TCTAGGGAGCCTAAGGAGAGGGTGCATTGTGTTCTTACAGGTTTAGTTCTGTTGGTGGATGGTGTTGCCTaGGAAATAAACTCCATGCAT +
Preference number: 5 (lower is better)
Translates to: SREPKERVHCVLTGLVLLVDGVA*EINSMH
Trigger: ATGCATGGAGTTTATTTCCAAGGCAACACCATCCAC...CAACAGAACTAAACCTGTAAGAACACAATGCACCCTCTCCTTAGGCTCCCTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TCAATAAGCCACGCAATCACACTGTCAGTAGTTAGCAGGCTGGAATTCAGAGTCAAGTCGTCTGTGTGCTaGAAATCCCGTGGATCTTTA +
Preference number: 5 (lower is better)
Translates to: SISHAITLSVVSRLEFRVKSSVC*KSRGSL
Trigger: TAAAGATCCACGGGATTTCAAGCACACAGACGACTT...GACTCTGAATTCCAGCCTGCTAACTACTGACAGTGTGATTGCGTGGCTTATTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TCTAGGGAGCCTAAGGAGAGGGTGCATTGTGTTCTTACAGGTTTAGTTCTGTTGGTGGAACAGAACACCTaGAAAATACCTGAATGGTCT +
Preference number: 5 (lower is better)
Translates to: SREPKERVHCVLTGLVLLVEQNT*KIPEWS
Trigger: AGACCATTCAGGTATTTTCAAGGTGTTCTGTTCCAC...CAACAGAACTAAACCTGTAAGAACACAATGCACCCTCTCCTTAGGCTCCCTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TTGTCTTTAACAAGCAGAGAATGCAGGATTTTAAAGGTCCTTTCTCCTCCTTGTCATTGGTCCCAGGAGTaGAAGGTGCTCTTCTTGAGG +
Preference number: 5 (lower is better)
Translates to: LSLTSRECRILKVLSPPCHWSQE*KVLFLR
Trigger: CCTCAAGAAGAGCACCTTCAACTCCTGGGACCAATG...ACAAGGAGGAGAAAGGACCTTTAAAATCCTGCATTCTCTGCTTGTTAAAGACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TCAATAAGCCACGCAATCACACTGTCAGTAGTTAGCAGGCTGGAATTCAGAGTCTTAGTGCAGAATTGCTaGATGTTGTCATCCAGATAC +
Preference number: 5 (lower is better)
Translates to: SISHAITLSVVSRLEFRVLVQNC*MLSSRY
Trigger: GTATCTGGATGACAACATCAAGCAATTCTGCACTAA...GACTCTGAATTCCAGCCTGCTAACTACTGACAGTGTGATTGCGTGGCTTATTGA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAATGTGTCCCATCGGCATaGAGCGTGCCCTTTTTGCAG +
Preference number: 5 (lower is better)
Translates to: EIITFIEDADVEKCPLNECVPSA*SVPFLQ
Trigger: CTGCAAAAAGGGCACGCTCAATGCCGATGGGACACA...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 90 bp CCAATATTTTCCTCCTATTCTGTTGTCAGCTTGTGTGAAGTACACTaGAGAGTCACTGCCAGATGTATTCAGGGGAAATCCAGTGAATTT +
Preference number: 5 (lower is better)
Translates to: PIFSSYSVVSLCEVH*RVTARCIQGKSSEF
Trigger: AAATTCACTGGATTTCCCCTGAATACATCTGGCAGTGACTCTGCAGTGTACTTCACACAAGCTGACAACAGAATAGGAGGAAAATATTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 90 bp CTTGTTGCTCCTCTGGAAAACAGCATCACTTTTGTCAACGGAATTTaGATTAGTGCAGAATTGCTTGATGTTGTCATCCAGATACCAGCT +
Preference number: 5 (lower is better)
Translates to: LVAPLENSITFVNGI*ISAELLDVVIQIPA
Trigger: AGCTGGTATCTGGATGACAACATCAAGCAATTCTGCACTAATCCAAATTCCGTTGACAAAAGTGATGCTGTTTTCCAGAGGAGCAACAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TCAATAAGCCACGCAATCACACTGTCAGTAGTTAGCAGGCTGGAATTCAGAGTCAGATACTTCTTGATATaGTCATCCAGATACCATGAC +
Preference number: 5 (lower is better)
Translates to: SISHAITLSVVSRLEFRVRYFLI*SSRYHD
Trigger: GTCATGGTATCTGGATGACAATATCAAGAAGTATCT...GACTCTGAATTCCAGCCTGCTAACTACTGACAGTGTGATTGCGTGGCTTATTGA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp AGACAGACAGATGTCCACGGCACTCTAATGTTTTCTAGAAGCTACACATCTAGAAATAAGGTCGCAAGTTaGTCTTCTGAGAAACTCTTC +
Preference number: 5 (lower is better)
Translates to: RQTDVHGTLMFSRSYTSRNKVAS*SSEKLF
Trigger: GAAGAGTTTCTCAGAAGACAAACTTGCGACCTTATT...TCTAGATGTGTAGCTTCTAGAAAACATTAGAGTGCCGTGGACATCTGTCTGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAAAGGGCATGCATCTTGTaGCTCCTCTGGAAAACAGCA +
Preference number: 5 (lower is better)
Translates to: EIITFIEDADVEKCPLNERACIL*LLWKTA
Trigger: TGCTGTTTTCCAGAGGAGCAACAAGATGCATGCCCT...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAAGGAGTTTTCCATTGTTaGAGTCCTCCACACCTTGGG +
Preference number: 5 (lower is better)
Translates to: EIITFIEDADVEKCPLNEGVFHC*SPPHLG
Trigger: CCCAAGGTGTGGAGGACTCAAACAATGGAAAACTCC...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCCAGGTGGTCACTGACTaGGCAGGTTATCATCCATTT +
Preference number: 5 (lower is better)
Translates to: QLLVVASFYLRLWLLSISQVVTD*AGYHPF
Trigger: AAATGGATGATAACCTGCCAAGTCAGTGACCACCTG...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TTGTCTTTAACAAGCAGAGAATGCAGGATTTTAAAGGTCCTTTCTCCTCCTTGTTATTCTGTTGTCAGCTaGTGTGAAGTACACTGCAGA +
Preference number: 5 (lower is better)
Translates to: LSLTSRECRILKVLSPPCYSVVS*CEVHCR
Trigger: TCTGCAGTGTACTTCACACAAGCTGACAACAGAATA...ACAAGGAGGAGAAAGGACCTTTAAAATCCTGCATTCTCTGCTTGTTAAAGACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp TTGTCTTTAACAAGCAGAGAATGCAGGATTTTAAAGGTCCTTTCTCCTCCTTGTTTAAGGAGTTTTCCATaGTTTGAGTCCTCCACACCT +
Preference number: 5 (lower is better)
Translates to: LSLTSRECRILKVLSPPCLRSFP*FESSTP
Trigger: AGGTGTGGAGGACTCAAACAATGGAAAACTCCTTAA...ACAAGGAGGAGAAAGGACCTTTAAAATCCTGCATTCTCTGCTTGTTAAAGACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 90 bp CATTTTGTTGCTCTCTTCAAAGTCGTCTGTGTGCTTGAAATCCCGTaGATCTTTATTGAGATACTTCTTGATATTGTCATCCAGATACCA +
Preference number: 5 (lower is better)
Translates to: HFVALFKVVCVLEIP*IFIEILLDIVIQIP
Trigger: TGGTATCTGGATGACAATATCAAGAAGTATCTCAATAAAGATCCACGGGATTTCAAGCACACAGACGACTTTGAAGAGAGCAACAAAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp GAAATCATAACTTTCATAGAAGATGCAGATGTGGAAAAATGCCCCCTAAATGAAACAGCATGCATCCGATaGGATTTCACAAACTCCTTG +
Preference number: 5 (lower is better)
Translates to: EIITFIEDADVEKCPLNETACIR*DFTNSL
Trigger: CAAGGAGTTTGTGAAATCCAATCGGATGCATGCTGT...TTCATTTAGGGGGCATTTTTCCACATCTGCATCTTCTATGAAAGTTATGATTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCCTGCATGGTAATGGATaGTGTGTATGTCCACTTCAC +
Preference number: 5 (lower is better)
Translates to: QLLVVASFYLRLWLLSISLHGNG*CVCPLH
Trigger: GTGAAGTGGACATACACACAATCCATTACCATGCAG...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS-3UTR CAA 90 bp CAACTATTAGTGGTTGCATCATTTTACCTAAGACTATGGCTTCTATCAATTTCCATGGCATGCATTTTGTaGCTCTCTTCAAAGTCGTCT +
Preference number: 5 (lower is better)
Translates to: QLLVVASFYLRLWLLSISMACIL*LSSKSS
Trigger: AGACGACTTTGAAGAGAGCAACAAAATGCATGCCAT...GGAAATTGATAGAAGCCATAGTCTTAGGTAAAATGATGCAACCACTAATAGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 90 bp TGGATCTTTATTGAGATACTTCTTGATATTGTCATCCAGATACCATaGCTCATTCTCATTGAAGACCAGGAACAACAGTGCAAACTCATA +
Preference number: 5 (lower is better)
Translates to: WIFIEILLDIVIQIP*LILIEDQEQQCKLI
Trigger: TATGAGTTTGCACTGTTGTTCCTGGTCTTCAATGAGAATGAGTCATGGTATCTGGATGACAATATCAAGAAGTATCTCAATAAAGATCCA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 72 bp GCTCTTCCTTGCCAGGTTGTTCCTGGGAGGGCACTGTaGCTGCGTGAGATCCTGCTCCAGAAGGCGTCTTGG +
Preference number: 6 (lower is better)
Translates to: ALPCQVVPGRAL*LREILLQKASW
Trigger: CCAAGACGCCTTCTGGAGCAGGATCTCACGCAGTCACAGTGCCCTCCCAGGAACAACCTGGCAAGGAAGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 72 bp CGCTATGAAGTAGCGCCGCTGTTGACCCTGCACCTTTaGGTGAGGAGCATTACCCCTGCAGTTGCCCACGCT +
Preference number: 6 (lower is better)
Translates to: RYEVAPLLTLHL*VRSITPAVAHA
Trigger: AGCGTGGGCAACTGCAGGGGTAATGCTCCTCACCCAAAGGTGCAGGGTCAACAGCGGCGCTACTTCATAGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 72 bp CCCTGTAAGCCATCTGCCTCCTTGAAGATCGGAGTCTaGGGGCGAGAACCACGGTGGCCACTAGAAGGAGGA +
Preference number: 6 (lower is better)
Translates to: PCKPSASLKIGV*GREPRWPLEGG
Trigger: TCCTCCTTCTAGTGGCCACCGTGGTTCTCGCCCTCAGACTCCGATCTTCAAGGAGGCAGATGGCTTACAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 72 bp ACAGGACTGGACTTCCCTGTAAGCCATCTGCCTCCTTaGAGATCGGAGTCTGAGGGCGAGAACCACGGTGGC +
Preference number: 6 (lower is better)
Translates to: TGLDFPVSHLPP*RSESEGENHGG
Trigger: GCCACCGTGGTTCTCGCCCTCAGACTCCGATCTTCAAGGAGGCAGATGGCTTACAGGGAAGTCCAGTCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 72 bp GTTCATCAGGTGGATAACGATCACGTCTCCCACTTCTaGCCTCAGGATGGGACCCAGAAACCCCAGCCAGGG +
Preference number: 6 (lower is better)
Translates to: VHQVDNDHVSHF*PQDGTQKPQPG
Trigger: CCCTGGCTGGGGTTTCTGGGTCCCATCCTGAGGGCAGAAGTGGGAGACGTGATCGTTATCCACCTGATGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 72 bp GTTGACCCTGCACCTTTGGGTGAGGAGCATTACCCCTaGAGTTGCCCACGCTGTACTGTCCCAGCATACCAG +
Preference number: 6 (lower is better)
Translates to: VDPAPLGEEHYP*SCPRCTVPAYQ
Trigger: CTGGTATGCTGGGACAGTACAGCGTGGGCAACTGCAGGGGTAATGCTCCTCACCCAAAGGTGCAGGGTCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 72 bp TTCCTTGCCAGGTTGTTCCTGGGAGGGCACTGTGACTaGGTGAGATCCTGCTCCAGAAGGCGTCTTGGTAGA +
Preference number: 6 (lower is better)
Translates to: FLARLFLGGHCD*VRSCSRRRLGR
Trigger: TCTACCAAGACGCCTTCTGGAGCAGGATCTCACGCAGTCACAGTGCCCTCCCAGGAACAACCTGGCAAGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 72 bp GTGACTGCACCAACTAGTCCAAGCAGACCCAGGAACTaGAGAAGGATGCAGCCACCCGGCTGCTTCAGAAAC +
Preference number: 6 (lower is better)
Translates to: VTAPTSPSRPRN*RRMQPPGCFRN
Trigger: GTTTCTGAAGCAGCCGGGTGGCTGCATCCTTCTCCAGTTCCTGGGTCTGCTTGGACTAGTTGGTGCAGTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 72 bp GGGGACCATAATCCCAGAGGACTTTTTCAGCCGCTATaGAGTAGCGCCGCTGTTGACCCTGCACCTTTGGGT +
Preference number: 6 (lower is better)
Translates to: GDHNPRGLFQPL*SSAAVDPAPLG
Trigger: ACCCAAAGGTGCAGGGTCAACAGCGGCGCTACTTCATAGCGGCTGAAAAAGTCCTCTGGGATTATGGTCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 72 bp CAATCAAGTGCCAGGAAACTCTGTCCTTCTTGCACATaGTCAGGCCTGGCTGGCTGCCGTACATGTAGCCGT +
Preference number: 6 (lower is better)
Translates to: QSSARKLCPSCT*SGLAGCRTCSR
Trigger: ACGGCTACATGTACGGCAGCCAGCCAGGCCTGAGCATGTGCAAGAAGGACAGAGTTTCCTGGCACTTGATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 72 bp CCTTTCTGTGTCCCATCGGCATTGAGCGTGCCCTTTTaGCAGACCAACAAAGGCCCCACAAGCCCAGCACTA +
Preference number: 6 (lower is better)
Translates to: PFCVPSALSVPF*QTNKGPTSPAL
Trigger: TAGTGCTGGGCTTGTGGGGCCTTTGTTGGTCTGCAAAAAGGGCACGCTCAATGCCGATGGGACACAGAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 90 bp TCCTTAGGGGCATCAATGTGTGAGTGGTACACCCAGGTCAGGCAGTaGGCATCTGCTGGAGCAGGTGCATATTCTTCTCTCACTGGCCAG +
Preference number: 6 (lower is better)
Translates to: SLGASMCEWYTQVRQ*ASAGAGAYSSLTGQ
Trigger: CTGGCCAGTGAGAGAAGAATATGCACCTGCTCCAGCAGATGCCAACTGCCTGACCTGGGTGTACCACTCACACATTGATGCCCCTAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 72 bp CAGTTGCCCACGCTGTACTGTCCCAGCATACCAGCTTaGAGGTGGTCACTGACTTGGCAGGTTATCATCCAT +
Preference number: 6 (lower is better)
Translates to: QLPTLYCPSIPA*RWSLTWQVIIH
Trigger: ATGGATGATAACCTGCCAAGTCAGTGACCACCTGCAAGCTGGTATGCTGGGACAGTACAGCGTGGGCAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 72 bp AAGGAGGAGTCCCAGGATGAAAAGGATGACCAGGGCTaGCTTGGCTCCTCTTGGACGCAGATTCTTGCCAAA +
Preference number: 6 (lower is better)
Translates to: KEESQDEKDDQG*LGSSWTQILAK
Trigger: TTTGGCAAGAATCTGCGTCCAAGAGGAGCCAAGGCAGCCCTGGTCATCCTTTTCATCCTGGGACTCCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 90 bp TGGACGCAGATTCTTGCCAAAGAAATAGAGCTCTTCCTTGCCAGGTaGTTCCTGGGAGGGCACTGTGACTGCGTGAGATCCTGCTCCAGA +
Preference number: 6 (lower is better)
Translates to: WTQILAKEIELFLAR*FLGGHCDCVRSCSR
Trigger: TCTGGAGCAGGATCTCACGCAGTCACAGTGCCCTCCCAGGAACAACCTGGCAAGGAAGAGCTCTATTTCTTTGGCAAGAATCTGCGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 72 bp TTCTGGCACTGTCCACCTGTAGGTGAAGGTTTCACCTaGCTTGACGTGAGCCCCTGGTTTCAGAAATCCATC +
Preference number: 6 (lower is better)
Translates to: FWHCPPVGEGFT*LDVSPWFQKSI
Trigger: GATGGATTTCTGAAACCAGGGGCTCACGTCAAGCCAGGTGAAACCTTCACCTACAGGTGGACAGTGCCAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 72 bp GCATCAATGTGTGAGTGGTACACCCAGGTCAGGCAGTaGGCATCTGCTGGAGCAGGTGCATATTCTTCTCTC +
Preference number: 6 (lower is better)
Translates to: ASMCEWYTQVRQ*ASAGAGAYSSL
Trigger: GAGAGAAGAATATGCACCTGCTCCAGCAGATGCCAACTGCCTGACCTGGGTGTACCACTCACACATTGATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 72 bp CTGTCCCAGCATACCAGCTTGCAGGTGGTCACTGACTaGGCAGGTTATCATCCATTTCCCAGGATTCTCCAC +
Preference number: 6 (lower is better)
Translates to: LSQHTSLQVVTD*AGYHPFPRILH
Trigger: GTGGAGAATCCTGGGAAATGGATGATAACCTGCCAAGTCAGTGACCACCTGCAAGCTGGTATGCTGGGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 90 bp TTGTCTATTCCTTTCTGTGTCCCATCGGCATTGAGCGTGCCCTTTTaGCAGACCAACAAAGGCCCCACAAGCCCAGCACTAGTGTCCTTG +
Preference number: 6 (lower is better)
Translates to: LSIPFCVPSALSVPF*QTNKGPTSPALVSL
Trigger: CAAGGACACTAGTGCTGGGCTTGTGGGGCCTTTGTTGGTCTGCAAAAAGGGCACGCTCAATGCCGATGGGACACAGAAAGGAATAGACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 72 bp GGGGTTTGGGAATCTCCGTGGAGTAGCTCCCATCTGTaGAGTGTCTATAAACCGCCTTCTTGTAGATCCCAC +
Preference number: 6 (lower is better)
Translates to: GVWESPWSSSHL*SVYKPPSCRSH
Trigger: GTGGGATCTACAAGAAGGCGGTTTATAGACACTTCACAGATGGGAGCTACTCCACGGAGATTCCCAAACCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 72 bp TGTCCCAGCATACCAGCTTGCAGGTGGTCACTGACTTaGCAGGTTATCATCCATTTCCCAGGATTCTCCACT +
Preference number: 6 (lower is better)
Translates to: CPSIPACRWSLT*QVIIHFPGFST
Trigger: AGTGGAGAATCCTGGGAAATGGATGATAACCTGCCAAGTCAGTGACCACCTGCAAGCTGGTATGCTGGGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 72 bp AAATACCTGAATGGTCTGGCTGCATGTATGCCGTTGTaGCCATATGGGGAAACAGAGCCAGGGAGTCACGAT +
Preference number: 6 (lower is better)
Translates to: KYLNGLAACMPL*PYGETEPGSHD
Trigger: ATCGTGACTCCCTGGCTCTGTTTCCCCATATGGCCACAACGGCATACATGCAGCCAGACCATTCAGGTATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 72 bp AATGAGAATGGAGTCCCCCACCTCAGCATGAATCATTaGTCCCAGGAGTTGAAGGTGCTCTTCTTGAGGTGG +
Preference number: 6 (lower is better)
Translates to: NENGVPHLSMNH*SQELKVLFLRW
Trigger: CCACCTCAAGAAGAGCACCTTCAACTCCTGGGACCAATGATTCATGCTGAGGTGGGGGACTCCATTCTCATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 72 bp ATTCTTGCCAAAGAAATAGAGCTCTTCCTTGCCAGGTaGTTCCTGGGAGGGCACTGTGACTGCGTGAGATCC +
Preference number: 6 (lower is better)
Translates to: ILAKEIELFLAR*FLGGHCDCVRS
Trigger: GGATCTCACGCAGTCACAGTGCCCTCCCAGGAACAACCTGGCAAGGAAGAGCTCTATTTCTTTGGCAAGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 90 bp CACGCTGTACTGTCCCAGCATACCAGCTTGCAGGTGGTCACTGACTaGGCAGGTTATCATCCATTTCCCAGGATTCTCCACTATCATTTC +
Preference number: 6 (lower is better)
Translates to: HAVLSQHTSLQVVTD*AGYHPFPRILHYHF
Trigger: GAAATGATAGTGGAGAATCCTGGGAAATGGATGATAACCTGCCAAGTCAGTGACCACCTGCAAGCTGGTATGCTGGGACAGTACAGCGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 72 bp TGTACTGTCCCAGCATACCAGCTTGCAGGTGGTCACTaGCTTGGCAGGTTATCATCCATTTCCCAGGATTCT +
Preference number: 6 (lower is better)
Translates to: CTVPAYQLAGGH*LGRLSSISQDS
Trigger: AGAATCCTGGGAAATGGATGATAACCTGCCAAGTCAGTGACCACCTGCAAGCTGGTATGCTGGGACAGTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 72 bp ATTCCTTGTCTATTCCTTTCTGTGTCCCATCGGCATTaGGCGTGCCCTTTTTGCAGACCAACAAAGGCCCCA +
Preference number: 6 (lower is better)
Translates to: IPCLFLSVSHRH*ACPFCRPTKAP
Trigger: TGGGGCCTTTGTTGGTCTGCAAAAAGGGCACGCTCAATGCCGATGGGACACAGAAAGGAATAGACAAGGAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 72 bp TGCAAAGAGAAAGGTCTGGAAGCAAAGTTCATCAGGTaGATAACGATCACGTCTCCCACTTCTGCCCTCAGG +
Preference number: 6 (lower is better)
Translates to: CKEKGLEAKFIR*ITITSPTSALR
Trigger: CCTGAGGGCAGAAGTGGGAGACGTGATCGTTATCCACCTGATGAACTTTGCTTCCAGACCTTTCTCTTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 72 bp GATGAAAAGGATGACCAGGGCTGCCTTGGCTCCTCTTaGACGCAGATTCTTGCCAAAGAAATAGAGCTCTTC +
Preference number: 6 (lower is better)
Translates to: DEKDDQGCLGSS*TQILAKEIELF
Trigger: GAAGAGCTCTATTTCTTTGGCAAGAATCTGCGTCCAAGAGGAGCCAAGGCAGCCCTGGTCATCCTTTTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 72 bp AATTCCTTGTCTATTCCTTTCTGTGTCCCATCGGCATaGAGCGTGCCCTTTTTGCAGACCAACAAAGGCCCC +
Preference number: 6 (lower is better)
Translates to: NSLSIPFCVPSA*SVPFLQTNKGP
Trigger: GGGGCCTTTGTTGGTCTGCAAAAAGGGCACGCTCAATGCCGATGGGACACAGAAAGGAATAGACAAGGAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 72 bp CCTCTCGTGAAGTGGGGTAAGGTGGAACAGAACACCTaGAAAATACCTGAATGGTCTGGCTGCATGTATGCC +
Preference number: 6 (lower is better)
Translates to: PLVKWGKVEQNT*KIPEWSGCMYA
Trigger: GGCATACATGCAGCCAGACCATTCAGGTATTTTCAAGGTGTTCTGTTCCACCTTACCCCACTTCACGAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 72 bp CCTGGCTTTGTGACAGGCACATTAAGGAGTTTTCCATaGTTTGAGTCCTCCACACCTTGGGCTGCAATGGAG +
Preference number: 6 (lower is better)
Translates to: PGFVTGTLRSFP*FESSTPWAAME
Trigger: CTCCATTGCAGCCCAAGGTGTGGAGGACTCAAACAATGGAAAACTCCTTAATGTGCCTGTCACAAAGCCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 90 bp TTCTCCACTATCATTTCTGTTGTGAGGAAGGTAGCTGGAAACAGGTaGACAACATCTGCCCGGTGCCCTCTGGTGATGAAGGTGTTACCA +
Preference number: 6 (lower is better)
Translates to: FSTIISVVRKVAGNR*TTSARCPLVMKVLP
Trigger: TGGTAACACCTTCATCACCAGAGGGCACCGGGCAGATGTTGTCAACCTGTTTCCAGCTACCTTCCTCACAACAGAAATGATAGTGGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 72 bp CTTTGTGACAGGCACATTAAGGAGTTTTCCATTGTTTaGGTCCTCCACACCTTGGGCTGCAATGGAGTAGGG +
Preference number: 6 (lower is better)
Translates to: LCDRHIKEFSIV*VLHTLGCNGVG
Trigger: CCCTACTCCATTGCAGCCCAAGGTGTGGAGGACTCAAACAATGGAAAACTCCTTAATGTGCCTGTCACAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 72 bp TATAAACCGCCTTCTTGTAGATCCCACCTATCCTGTTaGGCCCTCGCTCCAGAAATAAGGTCGCAAGTTTGT +
Preference number: 6 (lower is better)
Translates to: YKPPSCRSHLSC*ALAPEIRSQVC
Trigger: ACAAACTTGCGACCTTATTTCTGGAGCGAGGGCCCAACAGGATAGGTGGGATCTACAAGAAGGCGGTTTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 72 bp CTGTTGGGCCCTCGCTCCAGAAATAAGGTCGCAAGTTaGTCTTCTGAGAAACTCTTCCCGGTAATAACATCC +
Preference number: 6 (lower is better)
Translates to: LLGPRSRNKVAS*SSEKLFPVITS
Trigger: GGATGTTATTACCGGGAAGAGTTTCTCAGAAGACAAACTTGCGACCTTATTTCTGGAGCGAGGGCCCAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 90 bp CGTGTACCGAGCCTTCCAATATTTTCCTCCTATTCTGTTGTCAGCTaGTGTGAAGTACACTGCAGAGTCACTGCCAGATGTATTCAGGGG +
Preference number: 6 (lower is better)
Translates to: RVPSLPIFSSYSVVS*CEVHCRVTARCIQG
Trigger: CCCCTGAATACATCTGGCAGTGACTCTGCAGTGTACTTCACACAAGCTGACAACAGAATAGGAGGAAAATATTGGAAGGCTCGGTACACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 72 bp AGTATTCCTCCACAATCCCAATGTAGTATGTTCTGGTaGCTGCACCAACTAGTCCAAGCAGACCCAGGAACT +
Preference number: 6 (lower is better)
Translates to: SIPPQSQCSMFW*LHQLVQADPGT
Trigger: AGTTCCTGGGTCTGCTTGGACTAGTTGGTGCAGTCACCAGAACATACTACATTGGGATTGTGGAGGAATACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 72 bp TCCTCCTATTCTGTTGTCAGCTTGTGTGAAGTACACTaGAGAGTCACTGCCAGATGTATTCAGGGGAAATCC +
Preference number: 6 (lower is better)
Translates to: SSYSVVSLCEVH*RVTARCIQGKS
Trigger: GGATTTCCCCTGAATACATCTGGCAGTGACTCTGCAGTGTACTTCACACAAGCTGACAACAGAATAGGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 72 bp GAACAGAACACCTTGAAAATACCTGAATGGTCTGGCTaGATGTATGCCGTTGTGGCCATATGGGGAAACAGA +
Preference number: 6 (lower is better)
Translates to: EQNTLKIPEWSG*MYAVVAIWGNR
Trigger: TCTGTTTCCCCATATGGCCACAACGGCATACATGCAGCCAGACCATTCAGGTATTTTCAAGGTGTTCTGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 72 bp ACCTCTGCTTTGATGACTGGACCAAGGATTCCAAGATaGGCTTCTGAATCAGAGGGCATCTTTCTTCTACTG +
Preference number: 6 (lower is better)
Translates to: TSALMTGPRIPR*ASESEGIFLLL
Trigger: CAGTAGAAGAAAGATGCCCTCTGATTCAGAAGCCCATCTTGGAATCCTTGGTCCAGTCATCAAAGCAGAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 72 bp GTGAGATCCTGCTCCAGAAGGCGTCTTGGTAGAATATaGAATCCTGTTGTCTATGTTCCTGAGGACAGTGTA +
Preference number: 6 (lower is better)
Translates to: VRSCSRRRLGRI*NPVVYVPEDSV
Trigger: TACACTGTCCTCAGGAACATAGACAACAGGATTCCATATTCTACCAAGACGCCTTCTGGAGCAGGATCTCAC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 72 bp ATGAATCATTGGTCCCAGGAGTTGAAGGTGCTCTTCTaGAGGTGGCCGAGCTTTAATCTCCACAAATTCTCC +
Preference number: 6 (lower is better)
Translates to: MNHWSQELKVLF*RWPSFNLHKFS
Trigger: GGAGAATTTGTGGAGATTAAAGCTCGGCCACCTCAAGAAGAGCACCTTCAACTCCTGGGACCAATGATTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 90 bp ACATACTCCGTGTACCGAGCCTTCCAATATTTTCCTCCTATTCTGTaGTCAGCTTGTGTGAAGTACACTGCAGAGTCACTGCCAGATGTA +
Preference number: 6 (lower is better)
Translates to: TYSVYRAFQYFPPIL*SACVKYTAESLPDV
Trigger: TACATCTGGCAGTGACTCTGCAGTGTACTTCACACAAGCTGACAACAGAATAGGAGGAAAATATTGGAAGGCTCGGTACACGGAGTATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 90 bp CACCTCAGCATGAATCATTGGTCCCAGGAGTTGAAGGTGCTCTTCTaGAGGTGGCCGAGCTTTAATCTCCACAAATTCTCCATTTGTATA +
Preference number: 6 (lower is better)
Translates to: HLSMNHWSQELKVLF*RWPSFNLHKFSICI
Trigger: TATACAAATGGAGAATTTGTGGAGATTAAAGCTCGGCCACCTCAAGAAGAGCACCTTCAACTCCTGGGACCAATGATTCATGCTGAGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 90 bp GTGAAGAAGCCATGTTCCTGGGTGATCAGCAAACAGCTCAATGGTTaGAAATGTCCCAGGAAAGAGATCATACACATCTTCTCGGTAGGA +
Preference number: 6 (lower is better)
Translates to: VKKPCSWVISKQLNG*KCPRKEIIHIFSVG
Trigger: TCCTACCGAGAAGATGTGTATGATCTCTTTCCTGGGACATTTCAAACCATTGAGCTGTTTGCTGATCACCCAGGAACATGGCTTCTTCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS TCA 72 bp GATAACAAACTCTCGGTCCACATCAGTCCTCATCCCTaGGTATCTATTCAGTACACCTTCCTTACACACCAG +
Preference number: 6 (lower is better)
Translates to: DNKLSVHISPHP*VSIQYTFLTHQ
Trigger: CTGGTGTGTAAGGAAGGTGTACTGAATAGATACTCAGGGATGAGGACTGATGTGGACCGAGAGTTTGTTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 72 bp CTGATGCTTTGTCATAGAACACGCCATGGGGTAAGATaGTGTAGACTTTGTCAGCTTTGTTGGCAAAGGTCA +
Preference number: 6 (lower is better)
Translates to: LMLCHRTRHGVR*CRLCQLCWQRS
Trigger: TGACCTTTGCCAACAAAGCTGACAAAGTCTACAGCATCTTACCCCATGGCGTGTTCTATGACAAAGCATCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CCA 72 bp AGGAATCCATTGAGGGCATGCATCTTGTTGCTCCTCTaGAAAACAGCATCACTTTTGTCAACGGAATTTGGA +
Preference number: 6 (lower is better)
Translates to: RNPLRACILLLL*KTASLLSTEFG
Trigger: TCCAAATTCCGTTGACAAAAGTGATGCTGTTTTCCAGAGGAGCAACAAGATGCATGCCCTCAATGGATTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 72 bp CCATGTTCCTGGGTGATCAGCAAACAGCTCAATGGTTaGAAATGTCCCAGGAAAGAGATCATACACATCTTC +
Preference number: 6 (lower is better)
Translates to: PCSWVISKQLNG*KCPRKEIIHIF
Trigger: GAAGATGTGTATGATCTCTTTCCTGGGACATTTCAAACCATTGAGCTGTTTGCTGATCACCCAGGAACATGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 90 bp AGACCAGGGAGGTTTCCAAAAATCTTTCCATTAATGGCATGCATTTaGTTGCTCTCTTCAAAGTCGTCTGTGTGCTTGAAATCCCGTGGA +
Preference number: 6 (lower is better)
Translates to: RPGRFPKIFPLMACI*LLSSKSSVCLKSRG
Trigger: TCCACGGGATTTCAAGCACACAGACGACTTTGAAGAGAGCAACAAAATGCATGCCATTAATGGAAAGATTTTTGGAAACCTCCCTGGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 72 bp TCAACGGAATTTGGATTAGTGCAGAATTGCTTGATGTaGTCATCCAGATACCAGCTCTGGTTCTCATCCACA +
Preference number: 6 (lower is better)
Translates to: STEFGLVQNCLM*SSRYQLWFSST
Trigger: TGTGGATGAGAACCAGAGCTGGTATCTGGATGACAACATCAAGCAATTCTGCACTAATCCAAATTCCGTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 90 bp ACAGCATCACTTTTGTCAACGGAATTTGGATTAGTGCAGAATTGCTaGATGTTGTCATCCAGATACCAGCTCTGGTTCTCATCCACAAGA +
Preference number: 6 (lower is better)
Translates to: TASLLSTEFGLVQNC*MLSSRYQLWFSSTR
Trigger: TCTTGTGGATGAGAACCAGAGCTGGTATCTGGATGACAACATCAAGCAATTCTGCACTAATCCAAATTCCGTTGACAAAAGTGATGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 90 bp TTGAGGGCATGCATCTTGTTGCTCCTCTGGAAAACAGCATCACTTTaGTCAACGGAATTTGGATTAGTGCAGAATTGCTTGATGTTGTCA +
Preference number: 6 (lower is better)
Translates to: LRACILLLLWKTASL*STEFGLVQNCLMLS
Trigger: TGACAACATCAAGCAATTCTGCACTAATCCAAATTCCGTTGACAAAAGTGATGCTGTTTTCCAGAGGAGCAACAAGATGCATGCCCTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 72 bp TCACTTTTGTCAACGGAATTTGGATTAGTGCAGAATTaGTTGATGTTGTCATCCAGATACCAGCTCTGGTTC +
Preference number: 6 (lower is better)
Translates to: SLLSTEFGLVQN*LMLSSRYQLWF
Trigger: GAACCAGAGCTGGTATCTGGATGACAACATCAAGCAATTCTGCACTAATCCAAATTCCGTTGACAAAAGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 72 bp GCATGCATTTTGTTGCTCTCTTCAAAGTCGTCTGTGTaGTTGAAATCCCGTGGATCTTTATTGAGATACTTC +
Preference number: 6 (lower is better)
Translates to: ACILLLSSKSSV*LKSRGSLLRYF
Trigger: GAAGTATCTCAATAAAGATCCACGGGATTTCAAGCACACAGACGACTTTGAAGAGAGCAACAAAATGCATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 72 bp TGCATCTTGTTGCTCCTCTGGAAAACAGCATCACTTTaGTCAACGGAATTTGGATTAGTGCAGAATTGCTTG +
Preference number: 6 (lower is better)
Translates to: CILLLLWKTASL*STEFGLVQNCL
Trigger: CAAGCAATTCTGCACTAATCCAAATTCCGTTGACAAAAGTGATGCTGTTTTCCAGAGGAGCAACAAGATGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 90 bp CTCTCTTCAAAGTCGTCTGTGTGCTTGAAATCCCGTGGATCTTTATaGAGATACTTCTTGATATTGTCATCCAGATACCATGACTCATTC +
Preference number: 6 (lower is better)
Translates to: LSSKSSVCLKSRGSL*RYFLILSSRYHDSF
Trigger: GAATGAGTCATGGTATCTGGATGACAATATCAAGAAGTATCTCAATAAAGATCCACGGGATTTCAAGCACACAGACGACTTTGAAGAGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS GCA 72 bp TCGGTAGGACTTATCTATTTTGAACAGAAAGCTCTCTaGATGGTAATGGATTGTGTGTATGTCCACTTCACT +
Preference number: 6 (lower is better)
Translates to: SVGLIYFEQKAL*MVMDCVYVHFT
Trigger: AGTGAAGTGGACATACACACAATCCATTACCATGCAGAGAGCTTTCTGTTCAAAATAGATAAGTCCTACCGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2
CDS CAA 72 bp ATCACTTTTGTCAACGGAATTTGGATTAGTGCAGAATaGCTTGATGTTGTCATCCAGATACCAGCTCTGGTT +
Preference number: 6 (lower is better)
Translates to: ITFVNGIWISAE*LDVVIQIPALV
Trigger: AACCAGAGCTGGTATCTGGATGACAACATCAAGCAATTCTGCACTAATCCAAATTCCGTTGACAAAAGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159985.2