Pregenerated sensors for HEMK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032579Ensembl transcript IDs: ENSMUST00000035196.14, ENSMUST00000118051.2
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCCTGCTACACAGAGGGGGCAGGGCCAGGCTGGAAACCCAGCTCTTaGGTCTCTGTTCTTTGCTGCCCCAGGAAGAACACTCCATCCTTC | + |
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Preference number: 1 (lower is better) Translates to: ACYTEGAGPGWKPSS*VSVLCCPRKNTPSF Trigger: GAAGGATGGAGTGTTCTTCCTGGGGCAGCAAAGAACAGAGACCCAAGAGCTGGGTTTCCAGCCTGGCCCTGCCCCCTCTGTGTAGCAGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR TCA 90 bp | GAGTGGGCTATTCTGTGCAGGCCCTACAGTGTCCAAGGCCAGGACTaGGCCTCCCCATCCCCTGTCCCTATCACCTGGTATCCTTACACC | + |
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Preference number: 1 (lower is better) Translates to: EWAILCRPYSVQGQD*ASPSPVPITWYPYT Trigger: GGTGTAAGGATACCAGGTGATAGGGACAGGGGATGGGGAGGCTCAGTCCTGGCCTTGGACACTGTAGGGCCTGCACAGAATAGCCCACTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR TCA 90 bp | CGTGACTGCTGGCCACAAATCTATGGAGGGCTGTGGCCTCCTGTCTaGAGCCTAGAGTCTGAGAACCAGGCAAAATGCCTGCCGTTCCTC | + |
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Preference number: 1 (lower is better) Translates to: RDCWPQIYGGLWPPV*SLESENQAKCLPFL Trigger: GAGGAACGGCAGGCATTTTGCCTGGTTCTCAGACTCTAGGCTTCAGACAGGAGGCCACAGCCCTCCATAGATTTGTGGCCAGCAGTCACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR GCA 90 bp | GGGGCAGGGCCAGGCTGGAAACCCAGCTCTTGGGTCTCTGTTCTTTaGTGCCCCAGGAAGAACACTCCATCCTTCTTTCCAAGTCTCCTA | + |
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Preference number: 1 (lower is better) Translates to: GAGPGWKPSSWVSVL*CPRKNTPSFFPSLL Trigger: TAGGAGACTTGGAAAGAAGGATGGAGTGTTCTTCCTGGGGCAGCAAAGAACAGAGACCCAAGAGCTGGGTTTCCAGCCTGGCCCTGCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR GCA 90 bp | GCAGGGCCAGGCTGGAAACCCAGCTCTTGGGTCTCTGTTCTTTGCTaGCCCAGGAAGAACACTCCATCCTTCTTTCCAAGTCTCCTAGAA | + |
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Preference number: 1 (lower is better) Translates to: AGPGWKPSSWVSVLC*PRKNTPSFFPSLLE Trigger: TTCTAGGAGACTTGGAAAGAAGGATGGAGTGTTCTTCCTGGGGCAGCAAAGAACAGAGACCCAAGAGCTGGGTTTCCAGCCTGGCCCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR-3UTR CCA 90 bp | GCCAGGACTGAGCCTCCCCATCCCCTGTCCCTATCACCTGGTATCCTTACACCACTGTTCACCTTCCCCTaGGCGGCATTCCACACAGGG | + |
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Preference number: 2 (lower is better) Translates to: ARTEPPHPLSLSPGILTPLFTFP*AAFHTG Trigger: CCCTGTGTGGAATGCCGCCCAGGGGAAGGTGAACAG...TGGTGTAAGGATACCAGGTGATAGGGACAGGGGATGGGGAGGCTCAGTCCTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR-3UTR TCA 90 bp | ACCAGGCTGCCTTTCACAGTCCTACACAGGCCCAGTCAAGGTAGAGAATGTAGGGTCCAAGGCCAGGACTaGGCCTCCCCATCCCCTGTC | + |
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Preference number: 2 (lower is better) Translates to: TRLPFTVLHRPSQGRECRVQGQD*ASPSPV Trigger: GACAGGGGATGGGGAGGCTCAGTCCTGGCCTTGGAC...CCTACATTCTCTACCTTGACTGGGCCTGTGTAGGACTGTGAAAGGCAGCCTGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR-3UTR GCA 90 bp | GAACCAGGCTGCCTTTCACAGTCCTACACAGGCCCAGTCAAGGTAGAGAATGTAACAGGACCATGGCCGTaGCAGGGGCCCAGGACAGCG | + |
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Preference number: 2 (lower is better) Translates to: EPGCLSQSYTGPVKVENVTGPWP*QGPRTA Trigger: CGCTGTCCTGGGCCCCTGGCACGGCCATGGTCCTGT...TACATTCTCTACCTTGACTGGGCCTGTGTAGGACTGTGAAAGGCAGCCTGGTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR CAA 90 bp | GGGGGCAGGGCCAGGCTGGAAACCCAGCTCTTGGGTCTCTGTTCTTaGCTGCCCCAGGAAGAACACTCCATCCTTCTTTCCAAGTCTCCT | + |
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Preference number: 2 (lower is better) Translates to: GGRARLETQLLGLCS*LPQEEHSILLSKSP Trigger: AGGAGACTTGGAAAGAAGGATGGAGTGTTCTTCCTGGGGCAGCAAAGAACAGAGACCCAAGAGCTGGGTTTCCAGCCTGGCCCTGCCCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR-3UTR TCA 90 bp | ACCAGAGTGGGCTATTCTGTGCAGGCCCTACAGTGTCCAAGGCCAGGACTGAGCACCACACAGTCGGCTTaGCTTGCTGCAGAAGGGAGA | + |
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Preference number: 2 (lower is better) Translates to: TRVGYSVQALQCPRPGLSTTQSA*LAAEGR Trigger: TCTCCCTTCTGCAGCAAGTCAAGCCGACTGTGTGGT...GCTCAGTCCTGGCCTTGGACACTGTAGGGCCTGCACAGAATAGCCCACTCTGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR CAA 90 bp | ATCCCCTGTCCCTATCACCTGGTATCCTTACACCACACAGTCGGCTaGACTTGCTGCAGAAGGGAGAGGCTCTCAGGCCTAGTCCTGCAT | + |
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Preference number: 2 (lower is better) Translates to: IPCPYHLVSLHHTVG*TCCRRERLSGLVLH Trigger: ATGCAGGACTAGGCCTGAGAGCCTCTCCCTTCTGCAGCAAGTCAAGCCGACTGTGTGGTGTAAGGATACCAGGTGATAGGGACAGGGGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR-3UTR GCA 90 bp | ACCAGAGTGGGCTATTCTGTGCAGGCCCTACAGTGTCCAAGGCCAGGACTGAGCGTCTCTGTTCTTTGCTaGCCCAGGAAGAACACTCCA | + |
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Preference number: 2 (lower is better) Translates to: TRVGYSVQALQCPRPGLSVSVLC*PRKNTP Trigger: TGGAGTGTTCTTCCTGGGGCAGCAAAGAACAGAGAC...GCTCAGTCCTGGCCTTGGACACTGTAGGGCCTGCACAGAATAGCCCACTCTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR-3UTR GCA 90 bp | TTGCTGCAGAAGGGAGAGGCTCTCAGGCCTAGTCCTGCATGGGGAACGAGGGCCTGGCTCACCATTTATTaGTCTCTCAACACTTTACTA | + |
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Preference number: 2 (lower is better) Translates to: LLQKGEALRPSPAWGTRAWLTIY*SLNTLL Trigger: TAGTAAAGTGTTGAGAGAGCAATAAATGGTGAGCCA...GGCCCTCGTTCCCCATGCAGGACTAGGCCTGAGAGCCTCTCCCTTCTGCAGCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR-3UTR CCA 90 bp | GGAACCAGGCTGCCTTTCACAGTCCTACACAGGCCCAGTCAAGGTAGAGAATGTTGGAAACCCAGCTCTTaGGTCTCTGTTCTTTGCTGC | + |
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Preference number: 2 (lower is better) Translates to: GTRLPFTVLHRPSQGRECWKPSS*VSVLCC Trigger: GCAGCAAAGAACAGAGACCCAAGAGCTGGGTTTCCA...ACATTCTCTACCTTGACTGGGCCTGTGTAGGACTGTGAAAGGCAGCCTGGTTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR-3UTR TCA 90 bp | ACACCACACAGTCGGCTTGACTTGCTGCAGAAGGGAGAGGCTCTCAGGCCTAGTGGGAACGAGGGCCCATaGATGTTAATAACAAAATAC | + |
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Preference number: 2 (lower is better) Translates to: TPHSRLDLLQKGEALRPSGNEGP*MLITKY Trigger: GTATTTTGTTATTAACATTCATGGGCCCTCGTTCCC...ACTAGGCCTGAGAGCCTCTCCCTTCTGCAGCAAGTCAAGCCGACTGTGTGGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR-3UTR GCA 90 bp | TGCCTTTCACAGTCCTACACAGGCCCAGTCAAGGTAGAGAATGTAGGCATTCCCTGGGTCTCTGTTCTTTaGTGCCCCAGGAAGAACACT | + |
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Preference number: 2 (lower is better) Translates to: CLSQSYTGPVKVENVGIPWVSVL*CPRKNT Trigger: AGTGTTCTTCCTGGGGCAGCAAAGAACAGAGACCCA...GGGAATGCCTACATTCTCTACCTTGACTGGGCCTGTGTAGGACTGTGAAAGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR CAA 90 bp | CGAGGGCCCATGAATGTTAATAACAAAATACTGGCTCACCATTTATaGCTCTCTCAACACTTTACTAGCCATCCTTCCCAACATCTTTAT | + |
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Preference number: 2 (lower is better) Translates to: RGPMNVNNKILAHHL*LSQHFTSHPSQHLY Trigger: ATAAAGATGTTGGGAAGGATGGCTAGTAAAGTGTTGAGAGAGCAATAAATGGTGAGCCAGTATTTTGTTATTAACATTCATGGGCCCTCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR GCA 72 bp | AAACATCCATCATGGGGAATCACAGGACCATGGCCGTaGCAGGGGCCCAGGACAGCGCTGTTCACCTTCCCC | + |
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Preference number: 3 (lower is better) Translates to: KHPSWGITGPWP*QGPRTALFTFP Trigger: GGGGAAGGTGAACAGCGCTGTCCTGGGCCCCTGGCACGGCCATGGTCCTGTGATTCCCCATGATGGATGTTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR TCA 72 bp | ATTCTGTGCAGGCCCTACAGTGTCCAAGGCCAGGACTaGGCCTCCCCATCCCCTGTCCCTATCACCTGGTAT | + |
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Preference number: 3 (lower is better) Translates to: ILCRPYSVQGQD*ASPSPVPITWY Trigger: ATACCAGGTGATAGGGACAGGGGATGGGGAGGCTCAGTCCTGGCCTTGGACACTGTAGGGCCTGCACAGAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR TCA 72 bp | TGGAGGGCTGTGGCCTCCTGTCTGAAGCCTAGAGTCTaGGAACCAGGCAAAATGCCTGCCGTTCCTCAGGAT | + |
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Preference number: 3 (lower is better) Translates to: WRAVASCLKPRV*EPGKMPAVPQD Trigger: ATCCTGAGGAACGGCAGGCATTTTGCCTGGTTCTCAGACTCTAGGCTTCAGACAGGAGGCCACAGCCCTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR GCA 72 bp | CACCTGGTATCCTTACACCACACAGTCGGCTTGACTTaGTGCAGAAGGGAGAGGCTCTCAGGCCTAGTCCTG | + |
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Preference number: 3 (lower is better) Translates to: HLVSLHHTVGLT*CRRERLSGLVL Trigger: CAGGACTAGGCCTGAGAGCCTCTCCCTTCTGCAGCAAGTCAAGCCGACTGTGTGGTGTAAGGATACCAGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR-3UTR CAA 90 bp | GGAACCAGGCTGCCTTTCACAGTCCTACACAGGCCCAGTCAAGGTAGAGAATGTCACCACACAGTCGGCTaGACTTGCTGCAGAAGGGAG | + |
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Preference number: 3 (lower is better) Translates to: GTRLPFTVLHRPSQGRECHHTVG*TCCRRE Trigger: CTCCCTTCTGCAGCAAGTCAAGCCGACTGTGTGGTG...ACATTCTCTACCTTGACTGGGCCTGTGTAGGACTGTGAAAGGCAGCCTGGTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR TCA 72 bp | TGGCCACAAATCTATGGAGGGCTGTGGCCTCCTGTCTaGAGCCTAGAGTCTGAGAACCAGGCAAAATGCCTG | + |
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Preference number: 3 (lower is better) Translates to: WPQIYGGLWPPV*SLESENQAKCL Trigger: CAGGCATTTTGCCTGGTTCTCAGACTCTAGGCTTCAGACAGGAGGCCACAGCCCTCCATAGATTTGTGGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR GCA 72 bp | CCAGGCTGGAAACCCAGCTCTTGGGTCTCTGTTCTTTaGTGCCCCAGGAAGAACACTCCATCCTTCTTTCCA | + |
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Preference number: 3 (lower is better) Translates to: PGWKPSSWVSVL*CPRKNTPSFFP Trigger: TGGAAAGAAGGATGGAGTGTTCTTCCTGGGGCAGCAAAGAACAGAGACCCAAGAGCTGGGTTTCCAGCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR GCA 72 bp | GGCTGGAAACCCAGCTCTTGGGTCTCTGTTCTTTGCTaGCCCAGGAAGAACACTCCATCCTTCTTTCCAAGT | + |
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Preference number: 3 (lower is better) Translates to: GWKPSSWVSVLC*PRKNTPSFFPS Trigger: ACTTGGAAAGAAGGATGGAGTGTTCTTCCTGGGGCAGCAAAGAACAGAGACCCAAGAGCTGGGTTTCCAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR CCA 72 bp | TTTTGTAGGGAGGAGTGTCTGGGAAGGGGAGTTTATTaGCTAAGCCCTCAGGCCTTTAAGTATCTTATTAAA | + |
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Preference number: 3 (lower is better) Translates to: FCREECLGRGVY*LSPQAFKYLIK Trigger: TTTAATAAGATACTTAAAGGCCTGAGGGCTTAGCCAATAAACTCCCCTTCCCAGACACTCCTCCCTACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR TCA 90 bp | GGCGGCATTCCACACAGGGTAAGCCAGCCACCCAGCAGGCTAGAATCCTGGCCGTGTAGGGAGGGTTGCTaGCCACCAAGTCCAAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: GGIPHRVSQPPSRLESWPCREGC*PPSPRG Trigger: GCCCCTTGGACTTGGTGGTCAGCAACCCTCCCTACA...CGGCCAGGATTCTAGCCTGCTGGGTGGCTGGCTTACCCTGTGTGGAATGCCGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR TCA 90 bp | TCACCTTCCCCTGGGCGGCATTCCACACAGGGTAAGCCAGCCACCCAGCAGGCTTTCAGACTGAGCCCCTaGAAGTCCCACTCCCCAAGG | + |
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Preference number: 4 (lower is better) Translates to: SPSPGRHSTQGKPATQQAFRLSP*KSHSPR Trigger: CCTTGGGGAGTGGGACTTTCAGGGGCTCAGTCTGAA...AGCCTGCTGGGTGGCTGGCTTACCCTGTGTGGAATGCCGCCCAGGGGAAGGTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CCA 90 bp | TCACCTTCCCCTGGGCGGCATTCCACACAGGGTAAGCCAGCCACCCAGCAGGCTCAACAACTCGACTCTTaGGGAGCTGGCTCAGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: SPSPGRHSTQGKPATQQAQQLDS*GAGSAG Trigger: GCCTGCTGAGCCAGCTCCCCAAGAGTCGAGTTGTTG...AGCCTGCTGGGTGGCTGGCTTACCCTGTGTGGAATGCCGCCCAGGGGAAGGTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CCA 90 bp | GCCAGGACTGAGCCTCCCCATCCCCTGTCCCTATCACCTGGTATCCTTACACCATGGGCTCTCACTGCATaGGGCCTCTGGGCCACTTCC | + |
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Preference number: 4 (lower is better) Translates to: ARTEPPHPLSLSPGILTPWALTA*GLWATS Trigger: GGAAGTGGCCCAGAGGCCCCATGCAGTGAGAGCCCA...TGGTGTAAGGATACCAGGTGATAGGGACAGGGGATGGGGAGGCTCAGTCCTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CCA 90 bp | TGTGCAGGCCCTACAGTGTCCAAGGCCAGGACTGAGCCTCCCCATCCCCTGTCCTATGGTGCAGACTTCTaGACATGCAGGAACCGGGGC | + |
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Preference number: 4 (lower is better) Translates to: CAGPTVSKARTEPPHPLSYGADF*TCRNRG Trigger: GCCCCGGTTCCTGCATGTCCAGAAGTCTGCACCATA...GGACAGGGGATGGGGAGGCTCAGTCCTGGCCTTGGACACTGTAGGGCCTGCACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR TCA 90 bp | CTTGACTTGCTGCAGAAGGGAGAGGCTCTCAGGCCTAGTCCTGCATGGGGAACGGAGAGTAATGGCTCCTaGTCCACAGCCCACCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: LDLLQKGEALRPSPAWGTESNGS*STAHLQ Trigger: CTGGAGGTGGGCTGTGGATCAGGAGCCATTACTCTC...CGTTCCCCATGCAGGACTAGGCCTGAGAGCCTCTCCCTTCTGCAGCAAGTCAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR GCA 90 bp | TTGCTGCAGAAGGGAGAGGCTCTCAGGCCTAGTCCTGCATGGGGAACGAGGGCCGCTGTTCCATGTCCTTaGGGAAGATGTAGGGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: LLQKGEALRPSPAWGTRAAVPCP*GRCREG Trigger: ACCCTCCCTACATCTTCCGCAAGGACATGGAACAGC...GGCCCTCGTTCCCCATGCAGGACTAGGCCTGAGAGCCTCTCCCTTCTGCAGCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR GCA 90 bp | TCACCTTCCCCTGGGCGGCATTCCACACAGGGTAAGCCAGCCACCCAGCAGGCTATTCAAGAGCTGGGGTaGCAAGGTCAAGATGTGGGT | + |
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Preference number: 4 (lower is better) Translates to: SPSPGRHSTQGKPATQQAIQELG*QGQDVG Trigger: ACCCACATCTTGACCTTGGCACCCCAGCTCTTGAAT...AGCCTGCTGGGTGGCTGGCTTACCCTGTGTGGAATGCCGCCCAGGGGAAGGTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CCA 90 bp | ACCAGAGTGGGCTATTCTGTGCAGGCCCTACAGTGTCCAAGGCCAGGACTGAGCCCACGATGTACTCACTaGATTCCCGGGCCTCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: TRVGYSVQALQCPRPGLSPRCTH*IPGPLG Trigger: TCCCAGAGGCCCGGGAATCCAGTGAGTACATCGTGG...GCTCAGTCCTGGCCTTGGACACTGTAGGGCCTGCACAGAATAGCCCACTCTGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR TCA 90 bp | CTTGACTTGCTGCAGAAGGGAGAGGCTCTCAGGCCTAGTCCTGCATGGGGAACGTTGGCTCCGAGGACATaGGCCACGATGTACTCACTG | + |
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Preference number: 4 (lower is better) Translates to: LDLLQKGEALRPSPAWGTLAPRT*ATMYSL Trigger: CAGTGAGTACATCGTGGCTCATGTCCTCGGAGCCAA...CGTTCCCCATGCAGGACTAGGCCTGAGAGCCTCTCCCTTCTGCAGCAAGTCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR TCA 90 bp | TCACCTTCCCCTGGGCGGCATTCCACACAGGGTAAGCCAGCCACCCAGCAGGCTTTATATCAAGGTGGATaGTCCGGATCCTGTCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: SPSPGRHSTQGKPATQQALYQGG*SGSCPA Trigger: TGCAGGACAGGATCCGGATCATCCACCTTGATATAA...AGCCTGCTGGGTGGCTGGCTTACCCTGTGTGGAATGCCGCCCAGGGGAAGGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CCA 90 bp | TTACACCACACAGTCGGCTTGACTTGCTGCAGAAGGGAGAGGCTCTCAGGCCTAATGAGGGGACCATCCTaGGCTCTCACTGCATGGGGC | + |
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Preference number: 4 (lower is better) Translates to: LHHTVGLTCCRRERLSGLMRGPS*ALTAWG Trigger: GCCCCATGCAGTGAGAGCCCAGGATGGTCCCCTCAT...TAGGCCTGAGAGCCTCTCCCTTCTGCAGCAAGTCAAGCCGACTGTGTGGTGTAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR GCA 90 bp | GCTCTTGGGTCTCTGTTCTTTGCTGCCCCAGGAAGAACACTCCATCCTTCTTTCATCCTGGGCTCTCACTaGATGGGGCCTCTGGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: ALGSLFFAAPGRTLHPSFILGSH*MGPLGH Trigger: GTGGCCCAGAGGCCCCATGCAGTGAGAGCCCAGGAT...GAAAGAAGGATGGAGTGTTCTTCCTGGGGCAGCAAAGAACAGAGACCCAAGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR TCA 90 bp | GGAACCAGGCTGCCTTTCACAGTCCTACACAGGCCCAGTCAAGGTAGAGAATGTTCTCTGGCCGAGGGATaGACACTGGGGGTACCATCT | + |
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Preference number: 4 (lower is better) Translates to: GTRLPFTVLHRPSQGRECSLAEG*TLGVPS Trigger: AGATGGTACCCCCAGTGTTCATCCCTCGGCCAGAGA...ACATTCTCTACCTTGACTGGGCCTGTGTAGGACTGTGAAAGGCAGCCTGGTTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CCA 90 bp | TTGCTGCAGAAGGGAGAGGCTCTCAGGCCTAGTCCTGCATGGGGAACGAGGGCCCTTGGTCCAAAGTGCTaGTTTCAGGCTCTGAAATGT | + |
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Preference number: 4 (lower is better) Translates to: LLQKGEALRPSPAWGTRALGPKC*FQALKC Trigger: ACATTTCAGAGCCTGAAACCAGCACTTTGGACCAAG...GGCCCTCGTTCCCCATGCAGGACTAGGCCTGAGAGCCTCTCCCTTCTGCAGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| 3UTR CAA 72 bp | TCACCTGGTATCCTTACACCACACAGTCGGCTTGACTaGCTGCAGAAGGGAGAGGCTCTCAGGCCTAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: SPGILTPHSRLD*LQKGEALRPSP Trigger: AGGACTAGGCCTGAGAGCCTCTCCCTTCTGCAGCAAGTCAAGCCGACTGTGTGGTGTAAGGATACCAGGTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR GCA 90 bp | CAGAGTGGGCTATTCTGTGCAGGCCCTACAGTGTCCAAGGCCAGGACTGAGCCTTCCCCAAGGATATACTaGACCGGCATCCTCTGTAAT | + |
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Preference number: 4 (lower is better) Translates to: QSGLFCAGPTVSKARTEPSPRIY*TGILCN Trigger: ATTACAGAGGATGCCGGTGCAGTATATCCTTGGGGA...AGGCTCAGTCCTGGCCTTGGACACTGTAGGGCCTGCACAGAATAGCCCACTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CCA 90 bp | CCAGGCTGCCTTTCACAGTCCTACACAGGCCCAGTCAAGGTAGAGAATGTAGGCTTGTTGAGGGGTCAGTaGCTTGGTCCAAAGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: PGCLSQSYTGPVKVENVGLLRGQ*LGPKCW Trigger: CCAGCACTTTGGACCAAGCCACTGACCCCTCAACAA...GCCTACATTCTCTACCTTGACTGGGCCTGTGTAGGACTGTGAAAGGCAGCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CCA 90 bp | ACACCACACAGTCGGCTTGACTTGCTGCAGAAGGGAGAGGCTCTCAGGCCTAGTGTAACTGCAGATCTCTaGAGCCAGCTGTTCCATGTC | + |
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Preference number: 4 (lower is better) Translates to: TPHSRLDLLQKGEALRPSVTADL*SQLFHV Trigger: GACATGGAACAGCTGGCTCCAGAGATCTGCAGTTAC...ACTAGGCCTGAGAGCCTCTCCCTTCTGCAGCAAGTCAAGCCGACTGTGTGGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CCA 90 bp | TTACACCACACAGTCGGCTTGACTTGCTGCAGAAGGGAGAGGCTCTCAGGCCTAGGCTCTGAAATGTTTTaGCTCCGAGGACATGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: LHHTVGLTCCRRERLSGLGSEMF*LRGHEP Trigger: TGGCTCATGTCCTCGGAGCCAAAACATTTCAGAGCC...TAGGCCTGAGAGCCTCTCCCTTCTGCAGCAAGTCAAGCCGACTGTGTGGTGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CCA 90 bp | TGCCTTTCACAGTCCTACACAGGCCCAGTCAAGGTAGAGAATGTAGGCATTCCCACTGCATGGGGCCTCTaGGCCACTTCCTCTAAAACC | + |
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Preference number: 4 (lower is better) Translates to: CLSQSYTGPVKVENVGIPTAWGL*ATSSKT Trigger: GGTTTTAGAGGAAGTGGCCCAGAGGCCCCATGCAGT...GGGAATGCCTACATTCTCTACCTTGACTGGGCCTGTGTAGGACTGTGAAAGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CCA 90 bp | CCAGGCTGCCTTTCACAGTCCTACACAGGCCCAGTCAAGGTAGAGAATGTAGGCACTGCTGACAAGCTCTaGGTGTCTTGGGTCTACTTC | + |
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Preference number: 4 (lower is better) Translates to: PGCLSQSYTGPVKVENVGTADKL*VSWVYF Trigger: GAAGTAGACCCAAGACACCCAGAGCTTGTCAGCAGT...GCCTACATTCTCTACCTTGACTGGGCCTGTGTAGGACTGTGAAAGGCAGCCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR TCA 90 bp | TGCCTTTCACAGTCCTACACAGGCCCAGTCAAGGTAGAGAATGTAGGCATTCCCGTACCATCTTCAGACTaGGCCCCTGAAAGTCCCACT | + |
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Preference number: 4 (lower is better) Translates to: CLSQSYTGPVKVENVGIPVPSSD*APESPT Trigger: AGTGGGACTTTCAGGGGCTCAGTCTGAAGATGGTAC...GGGAATGCCTACATTCTCTACCTTGACTGGGCCTGTGTAGGACTGTGAAAGGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR GCA 90 bp | TTACACCACACAGTCGGCTTGACTTGCTGCAGAAGGGAGAGGCTCTCAGGCCTATGGCTTGGTCCAAAGTaGTGGTTTCAGGCTCTGAAA | + |
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Preference number: 4 (lower is better) Translates to: LHHTVGLTCCRRERLSGLWLGPK*WFQALK Trigger: TTTCAGAGCCTGAAACCAGCACTTTGGACCAAGCCA...TAGGCCTGAGAGCCTCTCCCTTCTGCAGCAAGTCAAGCCGACTGTGTGGTGTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR GCA 90 bp | TCCACACAGGGTAAGCCAGCCACCCAGCAGGCTAGAATCCTGGCCGGGTGTTCACTACTTCTAAGAAGATaGTTCCAGAGGCATTCAAGA | + |
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Preference number: 4 (lower is better) Translates to: STQGKPATQQARILAGCSLLLRR*FQRHSR Trigger: TCTTGAATGCCTCTGGAAGCATCTTCTTAGAAGTAG...TGAACACCCGGCCAGGATTCTAGCCTGCTGGGTGGCTGGCTTACCCTGTGTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CCA 90 bp | TGCCTTTCACAGTCCTACACAGGCCCAGTCAAGGTAGAGAATGTAGGCATTCCCGGATTCCCGGGCCTCTaGGATACCTCTTTCCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: CLSQSYTGPVKVENVGIPGFPGL*DTSFLK Trigger: TTTGAGGAAAGAGGTATCCCAGAGGCCCGGGAATCC...GGGAATGCCTACATTCTCTACCTTGACTGGGCCTGTGTAGGACTGTGAAAGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CCA 90 bp | CTCTTGGGTCTCTGTTCTTTGCTGCCCCAGGAAGAACACTCCATCCTTCTTTCCGAGGGGTCAGTGGCTTaGTCCAAAGTGCTGGTTTCA | + |
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Preference number: 4 (lower is better) Translates to: LLGLCSLLPQEEHSILLSEGSVA*SKVLVS Trigger: TGAAACCAGCACTTTGGACCAAGCCACTGACCCCTC...GGAAAGAAGGATGGAGTGTTCTTCCTGGGGCAGCAAAGAACAGAGACCCAAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR GCA 90 bp | GAACCAGGCTGCCTTTCACAGTCCTACACAGGCCCAGTCAAGGTAGAGAATGTAAGGGCAAAAGGTGTGTaGAGCACCCCTCTGAAGTTA | + |
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Preference number: 4 (lower is better) Translates to: EPGCLSQSYTGPVKVENVRAKGV*STPLKL Trigger: TAACTTCAGAGGGGTGCTGCACACACCTTTTGCCCT...TACATTCTCTACCTTGACTGGGCCTGTGTAGGACTGTGAAAGGCAGCCTGGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CCA 90 bp | GCTCTTGGGTCTCTGTTCTTTGCTGCCCCAGGAAGAACACTCCATCCTTCTTTCGCCAAGGTCAAGATGTaGGTGATGATGTCCATGCCT | + |
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Preference number: 4 (lower is better) Translates to: ALGSLFFAAPGRTLHPSFAKVKM*VMMSMP Trigger: AGGCATGGACATCATCACCCACATCTTGACCTTGGC...GAAAGAAGGATGGAGTGTTCTTCCTGGGGCAGCAAAGAACAGAGACCCAAGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS TCA 90 bp | TCGACTCTTGGGGAGCTGGCTCAGCAGGCTGAGAGTAATGGCTCCTaGTCCACAGCCCACCTCCAGAATGAGGGGACCATCCTGGGCTCT | + |
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Preference number: 5 (lower is better) Translates to: STLGELAQQAESNGS*STAHLQNEGTILGS Trigger: AGAGCCCAGGATGGTCCCCTCATTCTGGAGGTGGGCTGTGGATCAGGAGCCATTACTCTCAGCCTGCTGAGCCAGCTCCCCAAGAGTCGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CAA 90 bp | CAGAGTGGGCTATTCTGTGCAGGCCCTACAGTGTCCAAGGCCAGGACTGAGCCTGCAACAACTCGACTCTaGGGGAGCTGGCTCAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: QSGLFCAGPTVSKARTEPATTRL*GSWLSR Trigger: CCTGCTGAGCCAGCTCCCCAAGAGTCGAGTTGTTGC...AGGCTCAGTCCTGGCCTTGGACACTGTAGGGCCTGCACAGAATAGCCCACTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS TCA 90 bp | TGGCACTCAACGGCCCAGTCAGGGATGAATAAGTCTTCCATGAGTTaGAGGCCCAGCCCTGGAGGACTCCCCTCCTTCCTCGGGGAACAG | + |
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Preference number: 5 (lower is better) Translates to: WHSTAQSGMNKSSMS*RPSPGGLPSFLGEQ Trigger: CTGTTCCCCGAGGAAGGAGGGGAGTCCTCCAGGGCTGGGCCTTCAACTCATGGAAGACTTATTCATCCCTGACTGGGCCGTTGAGTGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS TCA 90 bp | GAGCCAGCTGTTCCATGTCCTTGCGGAAGATGTAGGGAGGGTTGCTaGCCACCAAGTCCAAGGGGCTCCAGGGCAAAAGGTGTGTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: EPAVPCPCGRCREGC*PPSPRGSRAKGVCS Trigger: GCTGCACACACCTTTTGCCCTGGAGCCCCTTGGACTTGGTGGTCAGCAACCCTCCCTACATCTTCCGCAAGGACATGGAACAGCTGGCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035196.14 ENSMUST00000118051.2 |
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| CDS CCA 90 bp | CAGCCCACCTCCAGAATGAGGGGACCATCCTGGGCTCTCACTGCATaGGGCCTCTGGGCCACTTCCTCTAAAACCCATTCAACCAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: QPTSRMRGPSWALTA*GLWATSSKTHSTSS Trigger: AGAACTGGTTGAATGGGTTTTAGAGGAAGTGGCCCAGAGGCCCCATGCAGTGAGAGCCCAGGATGGTCCCCTCATTCTGGAGGTGGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS-3UTR CAA 90 bp | GGCGGCATTCCACACAGGGTAAGCCAGCCACCCAGCAGGCTAGAATCCTGGCCGCAAGCTCTGGGTGTCTaGGGTCTACTTCTAAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: GGIPHRVSQPPSRLESWPQALGV*GLLLRR Trigger: TCTTCTTAGAAGTAGACCCAAGACACCCAGAGCTTG...CGGCCAGGATTCTAGCCTGCTGGGTGGCTGGCTTACCCTGTGTGGAATGCCGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS TCA 90 bp | TCCCGGGCCTCTGGGATACCTCTTTCCTCAAAGACCCGTGTCCAGTaGTTAACCATCCCTGTGGCACTCAACGGCCCAGTCAGGGATGAA | + |
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Preference number: 5 (lower is better) Translates to: SRASGIPLSSKTRVQ*LTIPVALNGPVRDE Trigger: TTCATCCCTGACTGGGCCGTTGAGTGCCACAGGGATGGTTAATCACTGGACACGGGTCTTTGAGGAAAGAGGTATCCCAGAGGCCCGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS CCA 90 bp | ATGCTTCCAGAGGCATTCAAGAGCTGGGGTGCCAAGGTCAAGATGTaGGTGATGATGTCCATGCCTTCGTCACCACCATCCAGGGCCACC | + |
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Preference number: 5 (lower is better) Translates to: MLPEAFKSWGAKVKM*VMMSMPSSPPSRAT Trigger: GGTGGCCCTGGATGGTGGTGACGAAGGCATGGACATCATCACCCACATCTTGACCTTGGCACCCCAGCTCTTGAATGCCTCTGGAAGCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035196.14 ENSMUST00000118051.2 |
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| CDS GCA 90 bp | CCATGCCTTCGTCACCACCATCCAGGGCCACCAGATCTTCGTAACTaGAGATCTCTGGAGCCAGCTGTTCCATGTCCTTGCGGAAGATGT | + |
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Preference number: 5 (lower is better) Translates to: PCLRHHHPGPPDLRN*RSLEPAVPCPCGRC Trigger: ACATCTTCCGCAAGGACATGGAACAGCTGGCTCCAGAGATCTGCAGTTACGAAGATCTGGTGGCCCTGGATGGTGGTGACGAAGGCATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035196.14 ENSMUST00000118051.2 |
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| CDS CCA 90 bp | GTCACCACCATCCAGGGCCACCAGATCTTCGTAACTGCAGATCTCTaGAGCCAGCTGTTCCATGTCCTTGCGGAAGATGTAGGGAGGGTT | + |
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Preference number: 5 (lower is better) Translates to: VTTIQGHQIFVTADL*SQLFHVLAEDVGRV Trigger: AACCCTCCCTACATCTTCCGCAAGGACATGGAACAGCTGGCTCCAGAGATCTGCAGTTACGAAGATCTGGTGGCCCTGGATGGTGGTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035196.14 ENSMUST00000118051.2 |
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| CDS CCA 90 bp | TCCGAGGACATGAGCCACGATGTACTCACTGGATTCCCGGGCCTCTaGGATACCTCTTTCCTCAAAGACCCGTGTCCAGTGATTAACCAT | + |
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Preference number: 5 (lower is better) Translates to: SEDMSHDVLTGFPGL*DTSFLKDPCPVINH Trigger: ATGGTTAATCACTGGACACGGGTCTTTGAGGAAAGAGGTATCCCAGAGGCCCGGGAATCCAGTGAGTACATCGTGGCTCATGTCCTCGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS CCA 90 bp | TCTGAAATGTTTTGGCTCCGAGGACATGAGCCACGATGTACTCACTaGATTCCCGGGCCTCTGGGATACCTCTTTCCTCAAAGACCCGTG | + |
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Preference number: 5 (lower is better) Translates to: SEMFWLRGHEPRCTH*IPGPLGYLFPQRPV Trigger: CACGGGTCTTTGAGGAAAGAGGTATCCCAGAGGCCCGGGAATCCAGTGAGTACATCGTGGCTCATGTCCTCGGAGCCAAAACATTTCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS TCA 90 bp | GCAAAAGGTGTGTGCAGCACCCCTCTGAAGTTATATCAAGGTGGATaGTCCGGATCCTGTCCTGCAGCTGAAGCCTCTGAGCATTCTCAT | + |
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Preference number: 5 (lower is better) Translates to: AKGVCSTPLKLYQGG*SGSCPAAEASEHSH Trigger: ATGAGAATGCTCAGAGGCTTCAGCTGCAGGACAGGATCCGGATCATCCACCTTGATATAACTTCAGAGGGGTGCTGCACACACCTTTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS CCA 90 bp | CTTGGGTCTACTTCTAAGAAGATGCTTCCAGAGGCATTCAAGAGCTaGGGTGCCAAGGTCAAGATGTGGGTGATGATGTCCATGCCTTCG | + |
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Preference number: 5 (lower is better) Translates to: LGSTSKKMLPEAFKS*GAKVKMWVMMSMPS Trigger: CGAAGGCATGGACATCATCACCCACATCTTGACCTTGGCACCCCAGCTCTTGAATGCCTCTGGAAGCATCTTCTTAGAAGTAGACCCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035196.14 ENSMUST00000118051.2 |
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| CDS-3UTR CAA 90 bp | TGCCTTTCACAGTCCTACACAGGCCCAGTCAAGGTAGAGAATGTAGGCATTCCCCTGGATGCATTCCAATaGTTGAGGGGTCAGTGGCTT | + |
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Preference number: 5 (lower is better) Translates to: CLSQSYTGPVKVENVGIPLDAFQ*LRGQWL Trigger: AAGCCACTGACCCCTCAACAATTGGAATGCATCCAG...GGGAATGCCTACATTCTCTACCTTGACTGGGCCTGTGTAGGACTGTGAAAGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS CCA 90 bp | CACATAGCTCCTGGATGCATTCCAATTGTTGAGGGGTCAGTGGCTTaGTCCAAAGTGCTGGTTTCAGGCTCTGAAATGTTTTGGCTCCGA | + |
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Preference number: 5 (lower is better) Translates to: HIAPGCIPIVEGSVA*SKVLVSGSEMFWLR Trigger: TCGGAGCCAAAACATTTCAGAGCCTGAAACCAGCACTTTGGACCAAGCCACTGACCCCTCAACAATTGGAATGCATCCAGGAGCTATGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS TCA 72 bp | GGGGAGCTGGCTCAGCAGGCTGAGAGTAATGGCTCCTaGTCCACAGCCCACCTCCAGAATGAGGGGACCATC | + |
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Preference number: 6 (lower is better) Translates to: GELAQQAESNGS*STAHLQNEGTI Trigger: GATGGTCCCCTCATTCTGGAGGTGGGCTGTGGATCAGGAGCCATTACTCTCAGCCTGCTGAGCCAGCTCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS CCA 72 bp | TCCAGAATGAGGGGACCATCCTGGGCTCTCACTGCATaGGGCCTCTGGGCCACTTCCTCTAAAACCCATTCA | + |
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Preference number: 6 (lower is better) Translates to: SRMRGPSWALTA*GLWATSSKTHS Trigger: TGAATGGGTTTTAGAGGAAGTGGCCCAGAGGCCCCATGCAGTGAGAGCCCAGGATGGTCCCCTCATTCTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS CCA 72 bp | ATGAGCCACGATGTACTCACTGGATTCCCGGGCCTCTaGGATACCTCTTTCCTCAAAGACCCGTGTCCAGTG | + |
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Preference number: 6 (lower is better) Translates to: MSHDVLTGFPGL*DTSFLKDPCPV Trigger: CACTGGACACGGGTCTTTGAGGAAAGAGGTATCCCAGAGGCCCGGGAATCCAGTGAGTACATCGTGGCTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS TCA 72 bp | TCTGGGATACCTCTTTCCTCAAAGACCCGTGTCCAGTaGTTAACCATCCCTGTGGCACTCAACGGCCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: SGIPLSSKTRVQ*LTIPVALNGPV Trigger: GACTGGGCCGTTGAGTGCCACAGGGATGGTTAATCACTGGACACGGGTCTTTGAGGAAAGAGGTATCCCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS TCA 72 bp | GTGTGCAGCACCCCTCTGAAGTTATATCAAGGTGGATaGTCCGGATCCTGTCCTGCAGCTGAAGCCTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: VCSTPLKLYQGG*SGSCPAAEASE Trigger: CTCAGAGGCTTCAGCTGCAGGACAGGATCCGGATCATCCACCTTGATATAACTTCAGAGGGGTGCTGCACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS CCA 72 bp | TTTTGGCTCCGAGGACATGAGCCACGATGTACTCACTaGATTCCCGGGCCTCTGGGATACCTCTTTCCTCAA | + |
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Preference number: 6 (lower is better) Translates to: FWLRGHEPRCTH*IPGPLGYLFPQ Trigger: TTGAGGAAAGAGGTATCCCAGAGGCCCGGGAATCCAGTGAGTACATCGTGGCTCATGTCCTCGGAGCCAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS CCA 72 bp | AACCAGTTCTTCTGTCTCTGGCCGAGGGATGAACACTaGGGGTACCATCTTCAGACTGAGCCCCTGAAAGTC | + |
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Preference number: 6 (lower is better) Translates to: NQFFCLWPRDEH*GYHLQTEPLKV Trigger: GACTTTCAGGGGCTCAGTCTGAAGATGGTACCCCCAGTGTTCATCCCTCGGCCAGAGACAGAAGAACTGGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS TCA 72 bp | CTACGGCCACATAGCTCCTGGATGCATTCCAATTGTTaGGGGGTCAGTGGCTTGGTCCAAAGTGCTGGTTTC | + |
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Preference number: 6 (lower is better) Translates to: LRPHSSWMHSNC*GVSGLVQSAGF Trigger: GAAACCAGCACTTTGGACCAAGCCACTGACCCCTCAACAATTGGAATGCATCCAGGAGCTATGTGGCCGTAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS GCA 72 bp | GCATCCTCTGTAATCTACGGCCACATAGCTCCTGGATaGATTCCAATTGTTGAGGGGTCAGTGGCTTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: ASSVIYGHIAPG*IPIVEGSVAWS Trigger: GGACCAAGCCACTGACCCCTCAACAATTGGAATGCATCCAGGAGCTATGTGGCCGTAGATTACAGAGGATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS CCA 72 bp | ATCCAGGGCCACCAGATCTTCGTAACTGCAGATCTCTaGAGCCAGCTGTTCCATGTCCTTGCGGAAGATGTA | + |
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Preference number: 6 (lower is better) Translates to: IQGHQIFVTADL*SQLFHVLAEDV Trigger: TACATCTTCCGCAAGGACATGGAACAGCTGGCTCCAGAGATCTGCAGTTACGAAGATCTGGTGGCCCTGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035196.14 ENSMUST00000118051.2 |
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| CDS CCA 72 bp | CAATTGTTGAGGGGTCAGTGGCTTGGTCCAAAGTGCTaGTTTCAGGCTCTGAAATGTTTTGGCTCCGAGGAC | + |
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Preference number: 6 (lower is better) Translates to: QLLRGQWLGPKC*FQALKCFGSED Trigger: GTCCTCGGAGCCAAAACATTTCAGAGCCTGAAACCAGCACTTTGGACCAAGCCACTGACCCCTCAACAATTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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| CDS GCA 72 bp | TTCCAATTGTTGAGGGGTCAGTGGCTTGGTCCAAAGTaGTGGTTTCAGGCTCTGAAATGTTTTGGCTCCGAG | + |
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Preference number: 6 (lower is better) Translates to: FQLLRGQWLGPK*WFQALKCFGSE Trigger: CTCGGAGCCAAAACATTTCAGAGCCTGAAACCAGCACTTTGGACCAAGCCACTGACCCCTCAACAATTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035196.14 |
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