RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HEG1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075254

Ensembl transcript IDs: ENSMUST00000126532.2, ENSMUST00000128105.2, ENSMUST00000152782.8, ENSMUST00000232568.2

Found 521 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCCGTCTTTCCCTTCCACTGTGGCCACGCCCCTCAAGCGTGGCTCTaGGGAGTCCCAGGAGCAGCTAGTGCATGGTGCTCCCTTTTGGGG +
Preference number: 1 (lower is better)
Translates to: SVFPFHCGHAPQAWL*GVPGAASAWCSLLG
Trigger: CCCCAAAAGGGAGCACCATGCACTAGCTGCTCCTGGGACTCCGCAGAGCCACGCTTGAGGGGCGTGGCCACAGTGGAAGGGAAAGACGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 90 bp GCCCACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTaGAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACGCCCCT +
Preference number: 1 (lower is better)
Translates to: AHDHVHSNNSAERVA*SSASVFPFHCGHAP
Trigger: AGGGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 90 bp AGCTGGGAGTCTGCCCCCTTCACAGGTGTTCACCACCTGGGAGTTTaGCCCCTACACAGGTGTTCACCAGCTGTGCTGCCAGCTGAAGAC +
Preference number: 1 (lower is better)
Translates to: SWESAPFTGVHHLGV*PLHRCSPAVLPAED
Trigger: GTCTTCAGCTGGCAGCACAGCTGGTGAACACCTGTGTAGGGGGCAAACTCCCAGGTGGTGAACACCTGTGAAGGGGGCAGACTCCCAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 90 bp CTTGAGGCTCCTGGCCCTGTACTCTTGACTCACCAGCTGGGAGTCTaGCCCCTTCACAGGTGTTCACCACCTGGGAGTTTGCCCCCTACA +
Preference number: 1 (lower is better)
Translates to: LEAPGPVLLTHQLGV*PLHRCSPPGSLPPT
Trigger: TGTAGGGGGCAAACTCCCAGGTGGTGAACACCTGTGAAGGGGGCAGACTCCCAGCTGGTGAGTCAAGAGTACAGGGCCAGGAGCCTCAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR TCA 90 bp GAGTACTTCATTCTGTGGGGCTTGAGGCTCCTGGCCCTGTACTCTTaGCTCACCAGCTGGGAGTCTGCCCCCTTCACAGGTGTTCACCAC +
Preference number: 1 (lower is better)
Translates to: EYFILWGLRLLALYS*LTSWESAPFTGVHH
Trigger: GTGGTGAACACCTGTGAAGGGGGCAGACTCCCAGCTGGTGAGTCAAGAGTACAGGGCCAGGAGCCTCAAGCCCCACAGAATGAAGTACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CCA 90 bp TACTGGCCCACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTaGCCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACG +
Preference number: 1 (lower is better)
Translates to: YWPTTMFTVTTVLNE*PAVPPPSFPSTVAT
Trigger: CGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTGGGCCAGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 90 bp AGCAAAGACTCTGCGTGTCCAGGCATGGGCTCAGCCTGTCTGTTCTaGTCATGGGTTGCTGGTGTCCTCTTGGGGCTCCTTCTGGATGTA +
Preference number: 1 (lower is better)
Translates to: SKDSACPGMGSACLF*SWVAGVLLGLLLDV
Trigger: TACATCCAGAAGGAGCCCCAAGAGGACACCAGCAACCCATGAGCAGAACAGACAGGCTGAGCCCATGCCTGGACACGCAGAGTCTTTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR GCA 90 bp TTCACCACCTGGGAGTTTGCCCCCTACACAGGTGTTCACCAGCTGTaGTGCCAGCTGAAGACATTAGAAGTGTCTGGGAACAGCCACCAC +
Preference number: 1 (lower is better)
Translates to: FTTWEFAPYTGVHQL*CQLKTLEVSGNSHH
Trigger: GTGGTGGCTGTTCCCAGACACTTCTAATGTCTTCAGCTGGCAGCACAGCTGGTGAACACCTGTGTAGGGGGCAAACTCCCAGGTGGTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 90 bp CTGCCTCAACCTTCTGAGGGCTGGGGTTCTAAGAGTGTACCACTCTaGCCTGCTTATGTGGTTCCGAGGCTAAACCCCAGGGCGTTATAC +
Preference number: 1 (lower is better)
Translates to: LPQPSEGWGSKSVPL*PAYVVPRLNPRALY
Trigger: GTATAACGCCCTGGGGTTTAGCCTCGGAACCACATAAGCAGGGCAGAGTGGTACACTCTTAGAACCCCAGCCCTCAGAAGGTTGAGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR TCA 90 bp AGGGCGGCACTTGTCTGGTATGCGCAAGGCCCTGGGGTCCACTCCTaGCTCTACCCTCCCATAGAAGCAGAAGAAGAAAAAGAGCTTTCA +
Preference number: 1 (lower is better)
Translates to: RAALVWYAQGPGVHS*LYPPIEAEEEKELS
Trigger: TGAAAGCTCTTTTTCTTCTTCTGCTTCTATGGGAGGGTAGAGTCAGGAGTGGACCCCAGGGCCTTGCGCATACCAGACAAGTGCCGCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR GCA 90 bp GCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACACACCTGCAACTaGCTCTCCTTTTTCAACTACACCCTGCAGACTCTGGCTCCACAT +
Preference number: 1 (lower is better)
Translates to: AFPLEVRHQLRHTCN*LSFFNYTLQTLAPH
Trigger: ATGTGGAGCCAGAGTCTGCAGGGTGTAGTTGAAAAAGGAGAGGCAGTTGCAGGTGTGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CCA 90 bp GAGTCTGAGAATAAGGCAGGCAGCCCTCACAGGGTTGCCTCAGCCTaGCTGTTCATGTCAAAAACCCACCTAGACCACCCCCTTTCACTT +
Preference number: 1 (lower is better)
Translates to: ESENKAGSPHRVASA*LFMSKTHLDHPLSL
Trigger: AAGTGAAAGGGGGTGGTCTAGGTGGGTTTTTGACATGAACAGCCAGGCTGAGGCAACCCTGTGAGGGCTGCCTGCCTTATTCTCAGACTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR TCA 90 bp TGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTaGGGCTCCTGGCCCTGTACTCTTGACTCACCAGCTGGGAGTCTG +
Preference number: 1 (lower is better)
Translates to: CWNSSQEQSTSFCGA*GSWPCTLDSPAGSL
Trigger: CAGACTCCCAGCTGGTGAGTCAAGAGTACAGGGCCAGGAGCCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 90 bp TGCACTGGAGTTCGGGGAATGTATCAGTTTACTCGTTCATTCCTCTaGCCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGT +
Preference number: 1 (lower is better)
Translates to: CTGVRGMYQFTRSFL*PIVGPTAGCFPSGG
Trigger: ACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAGGAATGAACGAGTAAACTGATACATTCCCCGAACTCCAGTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CCA 90 bp TTCGGGGAATGTATCAGTTTACTCGTTCATTCCTCTGCCCAATTGTaGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAG +
Preference number: 1 (lower is better)
Translates to: FGECISLLVHSSAQL*GLQLAAFPLEVRHQ
Trigger: CTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAGGAATGAACGAGTAAACTGATACATTCCCCGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR TCA 90 bp TGGAAGGCATCCCGTTCTACGTTCTACGTGTTGTGTCAGGCATTCTaGGACTCGGTACTGGCCCACGACCATGTTCACAGTAACAACAGT +
Preference number: 1 (lower is better)
Translates to: WKASRSTFYVLCQAF*DSVLAHDHVHSNNS
Trigger: ACTGTTGTTACTGTGAACATGGTCGTGGGCCAGTACCGAGTCTCAGAATGCCTGACACAACACGTAGAACGTAGAACGGGATGCCTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 90 bp AGGCAGTTTGCCACAGAAACTACATTCCCATGCTTCTCCTCTGAGTaGTCAGCACTGGCTAACCCACATGCTGTAAGGCCAGATACCTAC +
Preference number: 1 (lower is better)
Translates to: RQFATETTFPCFSSE*SALANPHAVRPDTY
Trigger: GTAGGTATCTGGCCTTACAGCATGTGGGTTAGCCAGTGCTGAGCACTCAGAGGAGAAGCATGGGAATGTAGTTTCTGTGGCAAACTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR CCA 90 bp GTTCTACGTTCTACGTGTTGTGTCAGGCATTCTGAGACTCGGTACTaGCCCACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGG +
Preference number: 1 (lower is better)
Translates to: VLRSTCCVRHSETRY*PTTMFTVTTVLNEW
Trigger: CCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTGGGCCAGTACCGAGTCTCAGAATGCCTGACACAACACGTAGAACGTAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CCA 90 bp GTAAGGCCAGATACCTACCTTACATGCATAGAGCCAGGCCCATGGTaGGAACACATGATGCTATTTCTCCTCCTAAGAAATAGGCCCCAG +
Preference number: 1 (lower is better)
Translates to: VRPDTYLTCIEPGPW*EHMMLFLLLRNRPQ
Trigger: CTGGGGCCTATTTCTTAGGAGGAGAAATAGCATCATGTGTTCCCACCATGGGCCTGGCTCTATGCATGTAAGGTAGGTATCTGGCCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR CCA 90 bp AACCCTGTTCCTGATGCCCCCAGGATAAACAAGTTCTACCTGGCCTaGATCTTCTCCATTTCATTATCTCCTAGGCAGTGTGGCTTTTCC +
Preference number: 1 (lower is better)
Translates to: NPVPDAPRINKFYLA*IFSISLSPRQCGFS
Trigger: GGAAAAGCCACACTGCCTAGGAGATAATGAAATGGAGAAGATCCAGGCCAGGTAGAACTTGTTTATCCTGGGGGCATCAGGAACAGGGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR GCA 90 bp TTATACATGCTAAGCAGGCAGTTTGCCACAGAAACTACATTCCCATaGTTCTCCTCTGAGTGCTCAGCACTGGCTAACCCACATGCTGTA +
Preference number: 1 (lower is better)
Translates to: LYMLSRQFATETTFP*FSSECSALANPHAV
Trigger: TACAGCATGTGGGTTAGCCAGTGCTGAGCACTCAGAGGAGAAGCATGGGAATGTAGTTTCTGTGGCAAACTGCCTGCTTAGCATGTATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR CCA 90 bp TTAAAGGGAAACTGGGTCCTGGAAATGAAGCCTAGTGGTCAGTTATaGAAGGCATCCCGTTCTACGTTCTACGTGTTGTGTCAGGCATTC +
Preference number: 1 (lower is better)
Translates to: LKGNWVLEMKPSGQL*KASRSTFYVLCQAF
Trigger: GAATGCCTGACACAACACGTAGAACGTAGAACGGGATGCCTTCCATAACTGACCACTAGGCTTCATTTCCAGGACCCAGTTTCCCTTTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR TCA 90 bp CCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTaGCACTTTTATGCACACAAATTATCCATTCTGAGCACTTCTGTC +
Preference number: 1 (lower is better)
Translates to: PFCLLPLSWEPNSGL*HFYAHKLSILSTSV
Trigger: GACAGAAGTGCTCAGAATGGATAATTTGTGTGCATAAAAGTGTCACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR TCA 90 bp CATTTCCGTAACCAAACATGCTGGAACAAGACTAGAACCTTGAACTaGTACTGTCAAGAAGATATGAGAGGGCTGGGGGTGTGCAGATCC +
Preference number: 1 (lower is better)
Translates to: HFRNQTCWNKTRTLN*YCQEDMRGLGVCRS
Trigger: GGATCTGCACACCCCCAGCCCTCTCATATCTTCTTGACAGTATCAGTTCAAGGTTCTAGTCTTGTTCCAGCATGTTTGGTTACGGAAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR GCA 90 bp CCTCTACGACACAGTGTGGAAGTGTCCCAGCCCAATCTATTAAAGTaGAAATTAAAGGGAAACTGGGTCCTGGAAATGAAGCCTAGTGGT +
Preference number: 1 (lower is better)
Translates to: PLRHSVEVSQPNLLK*KLKGNWVLEMKPSG
Trigger: ACCACTAGGCTTCATTTCCAGGACCCAGTTTCCCTTTAATTTGCACTTTAATAGATTGGGCTGGGACACTTCCACACTGTGTCGTAGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 90 bp ACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTGACACTTTTATaGACACAAATTATCCATTCTGAGCACTTCTGTCTAGCAAAGACT +
Preference number: 1 (lower is better)
Translates to: TSLVMGAQFRTVTLL*TQIIHSEHFCLAKT
Trigger: AGTCTTTGCTAGACAGAAGTGCTCAGAATGGATAATTTGTGTGCATAAAAGTGTCACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR TCA 90 bp CCTGTTGAGGAACACACATTCCTCAACAATTCAGAACAAGGATATTaGGCCCATCATTTAAAATTATATAGCAGAATCTACCAGGCAGCC +
Preference number: 1 (lower is better)
Translates to: PVEEHTFLNNSEQGY*AHHLKLYSRIYQAA
Trigger: GGCTGCCTGGTAGATTCTGCTATATAATTTTAAATGATGGGCTCAATATCCTTGTTCTGAATTGTTGAGGAATGTGTGTTCCTCAACAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR TCA 90 bp ACATGCATCAATGGCTGGGTGAGAGTAAATAAGTTCTCTCCTCAGTaGATAAGTAGTTTTAAGTGGTTAAAAGTTTCTGTTGAGTTGGTG +
Preference number: 1 (lower is better)
Translates to: TCINGWVRVNKFSPQ*ISSFKWLKVSVELV
Trigger: CACCAACTCAACAGAAACTTTTAACCACTTAAAACTACTTATTCACTGAGGAGAGAACTTATTTACTCTCACCCAGCCATTGATGCATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR TCA 90 bp ATAAATTTAGAAATATGGGTAAAGCCCCTAGTTTTGAGTGTGTTATaGAACACTAAGCCAAGAGCAACTTGGCTGTACAGCTTTACTGCT +
Preference number: 1 (lower is better)
Translates to: INLEIWVKPLVLSVL*NTKPRATWLYSFTA
Trigger: AGCAGTAAAGCTGTACAGCCAAGTTGCTCTTGGCTTAGTGTTTCATAACACACTCAAAACTAGGGGCTTTACCCATATTTCTAAATTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR GCA 90 bp AGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTTTaGCCCGATTCATACTTGCTTGGGAAAGTAAAACTAATACATTGT +
Preference number: 1 (lower is better)
Translates to: RDTWMLLKKFKGMLF*PDSYLLGKVKLIHC
Trigger: ACAATGTATTAGTTTTACTTTCCCAAGCAAGTATGAATCGGGGCAAAACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp ACCCCAAGTAGGAGAGCACCCACACCCCCTTCATCCCAATGGTGGGCAGAGGCCCCTCAAGCGTGGCTCTaGGGAGTCCCAGGAGCAGCT +
Preference number: 2 (lower is better)
Translates to: TPSRRAPTPPSSQWWAEAPQAWL*GVPGAA
Trigger: AGCTGCTCCTGGGACTCCGCAGAGCCACGCTTGAGG...GGCCTCTGCCCACCATTGGGATGAAGGGGGTGTGGGTGCTCTCCTACTTGGGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp GTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACACTTTCCCTTCCACTGTaGCCACGCCCCTCAAGCGTG +
Preference number: 2 (lower is better)
Translates to: VGPTAGCFPSGGETPAQTLSLPL*PRPSSV
Trigger: CACGCTTGAGGGGCGTGGCCACAGTGGAAGGGAAAG...TGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp CCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTAGATGTCCGGGGAAGTaGCTCAGAGAAACGGGGGCC +
Preference number: 2 (lower is better)
Translates to: PIVGPTAGCFPSGGETPARCPGK*LRETGA
Trigger: GGCCCCCGTTTCTCTGAGCCACTTCCCCGGACATCT...AGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp GCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACACACCTGCAACTGCCTCAGATGTCCGGGGAAGTaGCTCAGAGAAACGGGGGCC +
Preference number: 2 (lower is better)
Translates to: AAFPLEVRHQLRHTCNCLRCPGK*LRETGA
Trigger: GGCCCCCGTTTCTCTGAGCCACTTCCCCGGACATCT...GAGGCAGTTGCAGGTGTGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR TCA 90 bp GTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACATTGTGTCAGGCATTCTaGGACTCGGTACTGGCCCAC +
Preference number: 2 (lower is better)
Translates to: VGPTAGCFPSGGETPAQTLCQAF*DSVLAH
Trigger: GTGGGCCAGTACCGAGTCTCAGAATGCCTGACACAA...TGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR TCA 90 bp CTCTGCCCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACATTGTGTCAGGCATTCTaGGACTCGGTACTGGCCCAC +
Preference number: 2 (lower is better)
Translates to: LCPIVGPTAGCFPSGGETLCQAF*DSVLAH
Trigger: GTGGGCCAGTACCGAGTCTCAGAATGCCTGACACAA...TGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp CAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTAGCTGGCCTACAGTGCTGAACGAGTaGCCTGCAGTTCCGCCTCCG +
Preference number: 2 (lower is better)
Translates to: QNTERPSPKASPQTLSWPTVLNE*PAVPPP
Trigger: CGGAGGCGGAACTGCAGGCCACTCGTTCAGCACTGT...AGGCCAGCTAAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp CAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTAGCTGGCCTTGTGGGGCCTACAGCTaGCTGCTTTCCCTCTGGAGG +
Preference number: 2 (lower is better)
Translates to: QNTERPSPKASPQTLSWPCGAYS*LLSLWR
Trigger: CCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACA...AGGCCAGCTAAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp TGCGTGTCCAGGCATGGGCTCAGCCTGTCTGTTCTGCTCATGGGTTGCTGGTGTCAGGTGTTCACCACCTaGGAGTTTGCCCCCTACACA +
Preference number: 2 (lower is better)
Translates to: CVSRHGLSLSVLLMGCWCQVFTT*EFAPYT
Trigger: TGTGTAGGGGGCAAACTCCCAGGTGGTGAACACCTG...ACACCAGCAACCCATGAGCAGAACAGACAGGCTGAGCCCATGCCTGGACACGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR CAA 90 bp ATGGGCTCAGCCTGTCTGTTCTGCTCATGGGTTGCTGGTGTCCTCTaGGGGCTCCTTCTGGATGTAACCCCAAGTAGGAGAGCACCCACA +
Preference number: 2 (lower is better)
Translates to: MGSACLFCSWVAGVL*GLLLDVTPSRRAPT
Trigger: TGTGGGTGCTCTCCTACTTGGGGTTACATCCAGAAGGAGCCCCAAGAGGACACCAGCAACCCATGAGCAGAACAGACAGGCTGAGCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp CAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTAGCTGGCCTGGAGCAGCTAGTGCATaGTGCTCCCTTTTGGGGGTG +
Preference number: 2 (lower is better)
Translates to: QNTERPSPKASPQTLSWPGAASA*CSLLGV
Trigger: CACCCCCAAAAGGGAGCACCATGCACTAGCTGCTCC...AGGCCAGCTAAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp ACCCCAAGTAGGAGAGCACCCACACCCCCTTCATCCCAATGGTGGGCAGAGGCCCATGCAATTCCCCCATaGGTCAAAAACACCTCACCA +
Preference number: 2 (lower is better)
Translates to: TPSRRAPTPPSSQWWAEAHAIPP*VKNTSP
Trigger: TGGTGAGGTGTTTTTGACCCATGGGGGAATTGCATG...GGCCTCTGCCCACCATTGGGATGAAGGGGGTGTGGGTGCTCTCCTACTTGGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp ACCCCAAGTAGGAGAGCACCCACACCCCCTTCATCCCAATGGTGGGCAGAGGCCTTTTCAACTACACCCTaGAGACTCTGGCTCCACATT +
Preference number: 2 (lower is better)
Translates to: TPSRRAPTPPSSQWWAEAFSTTP*RLWLHI
Trigger: AATGTGGAGCCAGAGTCTGCAGGGTGTAGTTGAAAA...GGCCTCTGCCCACCATTGGGATGAAGGGGGTGTGGGTGCTCTCCTACTTGGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp AGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTGGGTGGGGGGGCCTACAGCTGGCTaGTTTCCCTCTGGAGGTGAG +
Preference number: 2 (lower is better)
Translates to: SCPISRNICCGVPIIWVGGPTAG*FPSGGE
Trigger: CTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCC...CCCCACCCAGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCT
56% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp TGCGTGTCCAGGCATGGGCTCAGCCTGTCTGTTCTGCTCATGGGTTGCTGGTGTACACAGTCCTCCCACTaGCCAGGATCTCACAATACA +
Preference number: 2 (lower is better)
Translates to: CVSRHGLSLSVLLMGCWCTQSSH*PGSHNT
Trigger: TGTATTGTGAGATCCTGGGCAGTGGGAGGACTGTGT...ACACCAGCAACCCATGAGCAGAACAGACAGGCTGAGCCCATGCCTGGACACGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp TGGAGTCCCCATCATCTGGGTGGGGATAATGCTTTGACCTCTTCACCTCATCCACTTTCCCTTCCACTGTaGCCACGCCCCTCAAGCGTG +
Preference number: 2 (lower is better)
Translates to: WSPHHLGGDNALTSSPHPLSLPL*PRPSSV
Trigger: CACGCTTGAGGGGCGTGGCCACAGTGGAAGGGAAAG...TGGATGAGGTGAAGAGGTCAAAGCATTATCCCCACCCAGATGATGGGGACTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTACAGTGCTGAACGAGTaGCCTGCAGTTCCGCCTCCG +
Preference number: 2 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCTVLNE*PAVPPP
Trigger: CGGAGGCGGAACTGCAGGCCACTCGTTCAGCACTGT...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp TACAATAAGCAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTCCTCAAGCGTGGCTCTaGGGAGTCCCAGGAGCAGCT +
Preference number: 2 (lower is better)
Translates to: YNKQNTERPSPKASPQTLPQAWL*GVPGAA
Trigger: AGCTGCTCCTGGGACTCCGCAGAGCCACGCTTGAGG...AAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTGCTTATTGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp GTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACATTTTCAACTACACCCTaGAGACTCTGGCTCCACATT +
Preference number: 2 (lower is better)
Translates to: VGPTAGCFPSGGETPAQTFSTTP*RLWLHI
Trigger: AATGTGGAGCCAGAGTCTGCAGGGTGTAGTTGAAAA...TGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp CTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTAAGATGTCCGGGGAAGTaGCTCAGAGAAACGGGGGCC +
Preference number: 2 (lower is better)
Translates to: LPPSSPTSALEFGECISLRCPGK*LRETGA
Trigger: GGCCCCCGTTTCTCTGAGCCACTTCCCCGGACATCT...TAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp TGCGTGTCCAGGCATGGGCTCAGCCTGTCTGTTCTGCTCATGGGTTGCTGGTGTCCCATGGCTTCTAGATaGCGATGCTTTGCAACTTTG +
Preference number: 2 (lower is better)
Translates to: CVSRHGLSLSVLLMGCWCPMASR*RCFATL
Trigger: CAAAGTTGCAAAGCATCGCCATCTAGAAGCCATGGG...ACACCAGCAACCCATGAGCAGAACAGACAGGCTGAGCCCATGCCTGGACACGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp AGGCTGGAACTAGGAAGACCCTCCTTTTTAACCCTGTTCCTGATGCCCCCAGGACAGGTGTTCACCACCTaGGAGTTTGCCCCCTACACA +
Preference number: 2 (lower is better)
Translates to: RLELGRPSFLTLFLMPPGQVFTT*EFAPYT
Trigger: TGTGTAGGGGGCAAACTCCCAGGTGGTGAACACCTG...TCCTGGGGGCATCAGGAACAGGGTTAAAAAGGAGGGTCTTCCTAGTTCCAGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR CAA 90 bp GAGTTCGGGGAATGTATCAGTTTACTCGTTCATTCCTCTGCCCAATaGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACAC +
Preference number: 2 (lower is better)
Translates to: EFGECISLLVHSSAQ*WGLQLAAFPLEVRH
Trigger: GTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAGGAATGAACGAGTAAACTGATACATTCCCCGAACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp CAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTAGCTGGCCTCAGCTCAGACACACCTaGAACTGCCTCTCCTTTTTC +
Preference number: 2 (lower is better)
Translates to: QNTERPSPKASPQTLSWPQLRHT*NCLSFF
Trigger: GAAAAAGGAGAGGCAGTTGCAGGTGTGTCTGAGCTG...AGGCCAGCTAAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp AGGCTGGAACTAGGAAGACCCTCCTTTTTAACCCTGTTCCTGATGCCCCCAGGATCAGCCTGTCTGTTCTaGTCATGGGTTGCTGGTGTC +
Preference number: 2 (lower is better)
Translates to: RLELGRPSFLTLFLMPPGSACLF*SWVAGV
Trigger: GACACCAGCAACCCATGAGCAGAACAGACAGGCTGA...TCCTGGGGGCATCAGGAACAGGGTTAAAAAGGAGGGTCTTCCTAGTTCCAGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp TACAATAAGCAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTTGTGGGGCCTACAGCTaGCTGCTTTCCCTCTGGAGG +
Preference number: 2 (lower is better)
Translates to: YNKQNTERPSPKASPQTLCGAYS*LLSLWR
Trigger: CCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACA...AAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTGCTTATTGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp GGCAGTTTGCCACAGAAACTACATTCCCATGCTTCTCCTCTGAGTGCTCAGCACCCTTCATCCCAATGGTaGGCAGAGGCCTTTCTACCG +
Preference number: 2 (lower is better)
Translates to: GSLPQKLHSHASPLSAQHPSSQW*AEAFLP
Trigger: CGGTAGAAAGGCCTCTGCCCACCATTGGGATGAAGG...GTGCTGAGCACTCAGAGGAGAAGCATGGGAATGTAGTTTCTGTGGCAAACTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp ACCCCAAGTAGGAGAGCACCCACACCCCCTTCATCCCAATGGTGGGCAGAGGCCAAAGGAATGTTGTTTTaGCCCGATTCATACTTGCTT +
Preference number: 2 (lower is better)
Translates to: TPSRRAPTPPSSQWWAEAKGMLF*PDSYLL
Trigger: AAGCAAGTATGAATCGGGGCAAAACAACATTCCTTT...GGCCTCTGCCCACCATTGGGATGAAGGGGGTGTGGGTGCTCTCCTACTTGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp TACAATAAGCAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTGGAGCAGCTAGTGCATaGTGCTCCCTTTTGGGGGTG +
Preference number: 2 (lower is better)
Translates to: YNKQNTERPSPKASPQTLGAASA*CSLLGV
Trigger: CACCCCCAAAAGGGAGCACCATGCACTAGCTGCTCC...AAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTGCTTATTGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp GTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACAAAATTAAAGGGAAACTaGGTCCTGGAAATGAAGCCT +
Preference number: 2 (lower is better)
Translates to: VGPTAGCFPSGGETPAQTKLKGN*VLEMKP
Trigger: AGGCTTCATTTCCAGGACCCAGTTTCCCTTTAATTT...TGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp TGCGTGTCCAGGCATGGGCTCAGCCTGTCTGTTCTGCTCATGGGTTGCTGGTGTTCTCATTTATGGCATTaGCTTGGAAATGAGCACGGA +
Preference number: 2 (lower is better)
Translates to: CVSRHGLSLSVLLMGCWCSHLWH*LGNEHG
Trigger: TCCGTGCTCATTTCCAAGCCAATGCCATAAATGAGA...ACACCAGCAACCCATGAGCAGAACAGACAGGCTGAGCCCATGCCTGGACACGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp GCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACACACCTGCAACTGCCTCTCTCATTTATGGCATTaGCTTGGAAATGAGCACGGA +
Preference number: 2 (lower is better)
Translates to: AAFPLEVRHQLRHTCNCLSHLWH*LGNEHG
Trigger: TCCGTGCTCATTTCCAAGCCAATGCCATAAATGAGA...GAGGCAGTTGCAGGTGTGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp ACCACACTGGCTCTTCCCATAGCAATGAGGCCTGGAACAAGCAGGAATACTGCCCCTCAGACCCTTAGCTaGCCTTTAGTTCTCCAAAGC +
Preference number: 2 (lower is better)
Translates to: TTLALPIAMRPGTSRNTAPQTLS*PLVLQS
Trigger: GCTTTGGAGAACTAAAGGCCAGCTAAGGGTCTGAGG...GGCAGTATTCCTGCTTGTTCCAGGCCTCATTGCTATGGGAAGAGCCAGTGTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp CCCCTTTCACTTCTGAGGGCCCAAGCCACGTACCAATATGCCTCTTGCCAACCACACAAACAAGACCCATaGCTTCTAGATGGCGATGCT +
Preference number: 2 (lower is better)
Translates to: PLSLLRAQATYQYASCQPHKQDP*LLDGDA
Trigger: AGCATCGCCATCTAGAAGCCATGGGTCTTGTTTGTG...TGGTTGGCAAGAGGCATATTGGTACGTGGCTTGGGCCCTCAGAAGTGAAAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp AGGCTGGAACTAGGAAGACCCTCCTTTTTAACCCTGTTCCTGATGCCCCCAGGAGAATGCACCCTTGTTTaGGGGCTCTCCTGGTGTTTT +
Preference number: 2 (lower is better)
Translates to: RLELGRPSFLTLFLMPPGECTLV*GLSWCF
Trigger: AAAACACCAGGAGAGCCCCCAAACAAGGGTGCATTC...TCCTGGGGGCATCAGGAACAGGGTTAAAAAGGAGGGTCTTCCTAGTTCCAGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp CCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCTTTGTGTTGAGCCTTaGAAATGTCAAGGTCTCATT +
Preference number: 2 (lower is better)
Translates to: PIVGPTAGCFPSGGETPALCVEP*KCQGLI
Trigger: AATGAGACCTTGACATTTGCAAGGCTCAACACAAAG...AGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp CCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTAAATTAAAGGGAAACTaGGTCCTGGAAATGAAGCCT +
Preference number: 2 (lower is better)
Translates to: PIVGPTAGCFPSGGETPAKLKGN*VLEMKP
Trigger: AGGCTTCATTTCCAGGACCCAGTTTCCCTTTAATTT...AGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp TATGAAACACTAAGCCAAGAGCAACTTGGCTGTACAGCTTTACTGCTTTGGGCATGTGGGGCCTACAGCTaGCTGCTTTCCCTCTGGAGG +
Preference number: 2 (lower is better)
Translates to: YETLSQEQLGCTALLLWACGAYS*LLSLWR
Trigger: CCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACA...TGCCCAAAGCAGTAAAGCTGTACAGCCAAGTTGCTCTTGGCTTAGTGTTTCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp ACCACACTGGCTCTTCCCATAGCAATGAGGCCTGGAACAAGCAGGAATACTGCCTGGTGGGCAACATTATaGTTTGGAAGATTGGCAGGC +
Preference number: 2 (lower is better)
Translates to: TTLALPIAMRPGTSRNTAWWATL*FGRLAG
Trigger: GCCTGCCAATCTTCCAAACCATAATGTTGCCCACCA...GGCAGTATTCCTGCTTGTTCCAGGCCTCATTGCTATGGGAAGAGCCAGTGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp AGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTGGGTGGGGGCACAAGAACACACATaGATCAATGGCTGGGTGAGA +
Preference number: 2 (lower is better)
Translates to: SCPISRNICCGVPIIWVGAQEHT*INGWVR
Trigger: TCTCACCCAGCCATTGATGCATGTGTGTTCTTGTGC...CCCCACCCAGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTCATGCAATTCCCCCATaGGTCAAAAACACCTCACCA +
Preference number: 2 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCHAIPP*VKNTSP
Trigger: TGGTGAGGTGTTTTTGACCCATGGGGGAATTGCATG...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp AGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTGGGTGGGGCATGCAATTCCCCCATaGGTCAAAAACACCTCACCA +
Preference number: 2 (lower is better)
Translates to: SCPISRNICCGVPIIWVGHAIPP*VKNTSP
Trigger: TGGTGAGGTGTTTTTGACCCATGGGGGAATTGCATG...CCCCACCCAGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp CATCCCCGTTTACCTGTAACACCAGCAACACACATGCATCACAGCAACTCATGGCCTCAGACCCTTAGCTaGCCTTTAGTTCTCCAAAGC +
Preference number: 2 (lower is better)
Translates to: HPRLPVTPATHMHHSNSWPQTLS*PLVLQS
Trigger: GCTTTGGAGAACTAAAGGCCAGCTAAGGGTCTGAGG...CCATGAGTTGCTGTGATGCATGTGTGTTGCTGGTGTTACAGGTAAACGGGGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTCACAAACAAGACCCATaGCTTCTAGATGGCGATGCT +
Preference number: 2 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCHKQDP*LLDGDA
Trigger: AGCATCGCCATCTAGAAGCCATGGGTCTTGTTTGTG...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp GCATGCATCCTTGCCGGTGGCTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTCCCAATCTATTAAAGTaGAAATTAAAGGGAAACTGG +
Preference number: 2 (lower is better)
Translates to: ACILAGGFLLAPQLLHWSPNLLK*KLKGNW
Trigger: CCAGTTTCCCTTTAATTTGCACTTTAATAGATTGGG...ACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAGCCACCGGCAAGGATGCATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp GAAGTGTCTGGGAACAGCCACCACACTGGCTCTTCCCATAGCAATGAGGCCTGGAAAGGAATGTTGTTTTaGCCCGATTCATACTTGCTT +
Preference number: 2 (lower is better)
Translates to: EVSGNSHHTGSSHSNEAWKGMLF*PDSYLL
Trigger: AAGCAAGTATGAATCGGGGCAAAACAACATTCCTTT...CCAGGCCTCATTGCTATGGGAAGAGCCAGTGTGGTGGCTGTTCCCAGACACTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGGGTGTTCACCAGCTGTaGTGCCAGCTGAAGACATTA +
Preference number: 2 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRGVHQL*CQLKTL
Trigger: TAATGTCTTCAGCTGGCAGCACAGCTGGTGAACACC...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR TCA 90 bp TCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTGACACTTTTTGGGCCAAACTTGTaGGTCAACAAGCAATTTTGG +
Preference number: 2 (lower is better)
Translates to: SLLPTSLVMGAQFRTVTLFGPNL*VNKQFW
Trigger: CCAAAATTGCTTGTTGACTCACAAGTTTGGCCCAAA...AAGTGTCACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp ACCACACTGGCTCTTCCCATAGCAATGAGGCCTGGAACAAGCAGGAATACTGCCCTTTGTGTTGAGCCTTaGAAATGTCAAGGTCTCATT +
Preference number: 2 (lower is better)
Translates to: TTLALPIAMRPGTSRNTALCVEP*KCQGLI
Trigger: AATGAGACCTTGACATTTGCAAGGCTCAACACAAAG...GGCAGTATTCCTGCTTGTTCCAGGCCTCATTGCTATGGGAAGAGCCAGTGTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp CAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTAGCTGGCCTAAAGGAATGTTGTTTTaGCCCGATTCATACTTGCTT +
Preference number: 2 (lower is better)
Translates to: QNTERPSPKASPQTLSWPKGMLF*PDSYLL
Trigger: AAGCAAGTATGAATCGGGGCAAAACAACATTCCTTT...AGGCCAGCTAAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp AGGACTGTGACACTTTTATGCACACAAATTATCCATTCTGAGCACTTCTGTCTAGGGCCTACAGCTGGCTaGTTTCCCTCTGGAGGTGAG +
Preference number: 2 (lower is better)
Translates to: RTVTLLCTQIIHSEHFCLGPTAG*FPSGGE
Trigger: CTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCC...TAGACAGAAGTGCTCAGAATGGATAATTTGTGTGCATAAAAGTGTCACAGTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGTGGTGGGCAACATTATaGTTTGGAAGATTGGCAGGC +
Preference number: 2 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRWWATL*FGRLAG
Trigger: GCCTGCCAATCTTCCAAACCATAATGTTGCCCACCA...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp CAAAGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATACCTCAAGCGTGGCTCTaGGGAGTCCCAGGAGCAGCT +
Preference number: 2 (lower is better)
Translates to: QRNTYRTISNSCPISRNIPQAWL*GVPGAA
Trigger: AGCTGCTCCTGGGACTCCGCAGAGCCACGCTTGAGG...TATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp AACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAAATCCCTTTCCCTTCCACTGTaGCCACGCCCCTCAAGCGTG +
Preference number: 2 (lower is better)
Translates to: NQEQQNPLCTMNVTWLKSLSLPL*PRPSSV
Trigger: CACGCTTGAGGGGCGTGGCCACAGTGGAAGGGAAAG...GGATTTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGGGCAACATTATGGTTTaGAAGATTGGCAGGCATGCA +
Preference number: 2 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRGNIMV*KIGRHA
Trigger: TGCATGCCTGCCAATCTTCCAAACCATAATGTTGCC...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp TTTCTAACAGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTACACAGTCCTCCCACTaGCCAGGATCTCACAATACA +
Preference number: 2 (lower is better)
Translates to: FLTAVPFPEIYAVESPSSTQSSH*PGSHNT
Trigger: TGTATTGTGAGATCCTGGGCAGTGGGAGGACTGTGT...AGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCTGTTAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp TATGAAACACTAAGCCAAGAGCAACTTGGCTGTACAGCTTTACTGCTTTGGGCAAGCCACGTACCAATATaGCTCTTGCCAACCACAAAC +
Preference number: 2 (lower is better)
Translates to: YETLSQEQLGCTALLLWASHVPI*LLPTTN
Trigger: GTTTGTGGTTGGCAAGAGGCATATTGGTACGTGGCT...TGCCCAAAGCAGTAAAGCTGTACAGCCAAGTTGCTCTTGGCTTAGTGTTTCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTACATTAAGGGACACCTaGATGCTTCTAAAGAAATTC +
Preference number: 2 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCTLRDT*MLLKKF
Trigger: GAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGT...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTGTCAACAAGCAATTTTaGAACTCACAGGACACTTTT +
Preference number: 2 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCVNKQF*NSQDTF
Trigger: AAAAGTGTCCTGTGAGTTCCAAAATTGCTTGTTGAC...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTCCCAATCTATTAAAGTaGAAATTAAAGGGAAACTGG +
Preference number: 2 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCPNLLK*KLKGNW
Trigger: CCAGTTTCCCTTTAATTTGCACTTTAATAGATTGGG...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp ATTTGGGCCAAACTTGTGAGTCAACAAGCAATTTTGGAACTCACAGGACACTTTCAGCTCAGACACACCTaGAACTGCCTCTCCTTTTTC +
Preference number: 2 (lower is better)
Translates to: IWAKLVSQQAILELTGHFQLRHT*NCLSFF
Trigger: GAAAAAGGAGAGGCAGTTGCAGGTGTGTCTGAGCTG...AAAGTGTCCTGTGAGTTCCAAAATTGCTTGTTGACTCACAAGTTTGGCCCAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CAA 90 bp TCACTCCGTTCTATTTGGGCCAAACTTGTGAGTCAACAAGCAATTTaGGAACTCACAGGACACTTTTCTGGATGTTGGAATTCTTCCCAG +
Preference number: 2 (lower is better)
Translates to: SLRSIWAKLVSQQAI*ELTGHFSGCWNSSQ
Trigger: CTGGGAAGAATTCCAACATCCAGAAAAGTGTCCTGTGAGTTCCAAAATTGCTTGTTGACTCACAAGTTTGGCCCAAATAGAACGGAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp TCCTCCCACTGCCCAGGATCTCACAATACAATAAGCAAAACACAGAACGTCCTTCTTTGTGTTGAGCCTTaGAAATGTCAAGGTCTCATT +
Preference number: 2 (lower is better)
Translates to: SSHCPGSHNTISKTQNVLLCVEP*KCQGLI
Trigger: AATGAGACCTTGACATTTGCAAGGCTCAACACAAAG...AAGGACGTTCTGTGTTTTGCTTATTGTATTGTGAGATCCTGGGCAGTGGGAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp GGGTCTCACACAGTCAACCTGGGTGTCAGCATTAAAGGTATACAGAACAAGATCATTTCCAGAAATATATaGTGTGGAGTCCCCATCATC +
Preference number: 2 (lower is better)
Translates to: GSHTVNLGVSIKGIQNKIISRNI*CGVPII
Trigger: GATGATGGGGACTCCACAGCATATATTTCTGGAAAT...GATCTTGTTCTGTATACCTTTAATGCTGACACCCAGGTTGACTGTGTGAGACCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR-3UTR TCA 90 bp AGGACTGTGACACTTTTATGCACACAAATTATCCATTCTGAGCACTTCTGTCTAGTGGGGATAATGCTTTaGCCTCTTCACCTCATCCAA +
Preference number: 2 (lower is better)
Translates to: RTVTLLCTQIIHSEHFCLVGIML*PLHLIQ
Trigger: TTGGATGAGGTGAAGAGGTCAAAGCATTATCCCCAC...TAGACAGAAGTGCTCAGAATGGATAATTTGTGTGCATAAAAGTGTCACAGTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp CATCAACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAACAGCTCAGACACACCTaGAACTGCCTCTCCTTTTTC +
Preference number: 2 (lower is better)
Translates to: HQPRATESSLYYECNMVKQLRHT*NCLSFF
Trigger: GAAAAAGGAGAGGCAGTTGCAGGTGTGTCTGAGCTG...TTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTTGATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR GCA 90 bp AGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATATGCACACAGTCCTCCCACTaGCCAGGATCTCACAATACA +
Preference number: 2 (lower is better)
Translates to: RNTYRTISNSCPISRNICTQSSH*PGSHNT
Trigger: TGTATTGTGAGATCCTGGGCAGTGGGAGGACTGTGT...GCATATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp ATTTGGGCCAAACTTGTGAGTCAACAAGCAATTTTGGAACTCACAGGACACTTTGGCAACATTATGGTTTaGAAGATTGGCAGGCATGCA +
Preference number: 2 (lower is better)
Translates to: IWAKLVSQQAILELTGHFGNIMV*KIGRHA
Trigger: TGCATGCCTGCCAATCTTCCAAACCATAATGTTGCC...AAAGTGTCCTGTGAGTTCCAAAATTGCTTGTTGACTCACAAGTTTGGCCCAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR TCA 90 bp AGGACTGTGACACTTTTATGCACACAAATTATCCATTCTGAGCACTTCTGTCTATTTGGGCCAAACTTGTaGGTCAACAAGCAATTTTGG +
Preference number: 2 (lower is better)
Translates to: RTVTLLCTQIIHSEHFCLFGPNL*VNKQFW
Trigger: CCAAAATTGCTTGTTGACTCACAAGTTTGGCCCAAA...TAGACAGAAGTGCTCAGAATGGATAATTTGTGTGCATAAAAGTGTCACAGTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp AACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAAATCCGGCAACATTATGGTTTaGAAGATTGGCAGGCATGCA +
Preference number: 2 (lower is better)
Translates to: NQEQQNPLCTMNVTWLKSGNIMV*KIGRHA
Trigger: TGCATGCCTGCCAATCTTCCAAACCATAATGTTGCC...GGATTTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CAA 90 bp AAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTTaGCCCCGATTCATACTTGCTTGGGAAAGTAAAACTAATACATTG +
Preference number: 2 (lower is better)
Translates to: KGHLDASKEIQRNVV*PRFILAWESKTNTL
Trigger: CAATGTATTAGTTTTACTTTCCCAAGCAAGTATGAATCGGGGCAAAACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CCA 90 bp AACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAAATCCAAATTAAAGGGAAACTaGGTCCTGGAAATGAAGCCT +
Preference number: 2 (lower is better)
Translates to: NQEQQNPLCTMNVTWLKSKLKGN*VLEMKP
Trigger: AGGCTTCATTTCCAGGACCCAGTTTCCCTTTAATTT...GGATTTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CAA 90 bp GACATAAAGGGGTGTGACCTTGTGGAGACACCAAAGTACAATGAATaGATTGACATTCAATACTTTAATGTTCCTATTATCTTAACCTGT +
Preference number: 2 (lower is better)
Translates to: DIKGCDLVETPKYNE*IDIQYFNVPIILTC
Trigger: ACAGGTTAAGATAATAGGAACATTAAAGTATTGAATGTCAATCAATTCATTGTACTTTGGTGTCTCCACAAGGTCACACCCCTTTATGTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR CCA 72 bp GGCCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTaGCCACGCCCCTCAAGCGTGGCTCTGCGGAGTCCC +
Preference number: 3 (lower is better)
Translates to: GLQFRLRLSLPL*PRPSSVALRSP
Trigger: GGGACTCCGCAGAGCCACGCTTGAGGGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 72 bp CCCTTCCACTGTGGCCACGCCCCTCAAGCGTGGCTCTaGGGAGTCCCAGGAGCAGCTAGTGCATGGTGCTCC +
Preference number: 3 (lower is better)
Translates to: PFHCGHAPQAWL*GVPGAASAWCS
Trigger: GGAGCACCATGCACTAGCTGCTCCTGGGACTCCGCAGAGCCACGCTTGAGGGGCGTGGCCACAGTGGAAGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 72 bp GGGTGTGCAGATCCACAGGGCGGCACTTGTCTGGTATaGGCAAGGCCCTGGGGTCCACTCCTGACTCTACCC +
Preference number: 3 (lower is better)
Translates to: GCADPQGGTCLV*ARPWGPLLTLP
Trigger: GGGTAGAGTCAGGAGTGGACCCCAGGGCCTTGCGCATACCAGACAAGTGCCGCCCTGTGGATCTGCACACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR CCA 72 bp GTCTTTCCCTTCCACTGTGGCCACGCCCCTCAAGCGTaGCTCTGCGGAGTCCCAGGAGCAGCTAGTGCATGG +
Preference number: 3 (lower is better)
Translates to: VFPFHCGHAPQA*LCGVPGAASAW
Trigger: CCATGCACTAGCTGCTCCTGGGACTCCGCAGAGCCACGCTTGAGGGGCGTGGCCACAGTGGAAGGGAAAGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CCA 72 bp CCACAGGGCGGCACTTGTCTGGTATGCGCAAGGCCCTaGGGTCCACTCCTGACTCTACCCTCCCATAGAAGC +
Preference number: 3 (lower is better)
Translates to: PQGGTCLVCARP*GPLLTLPSHRS
Trigger: GCTTCTATGGGAGGGTAGAGTCAGGAGTGGACCCCAGGGCCTTGCGCATACCAGACAAGTGCCGCCCTGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR CCA 72 bp GCTGGGAGTCTGCCCCCTTCACAGGTGTTCACCACCTaGGAGTTTGCCCCCTACACAGGTGTTCACCAGCTG +
Preference number: 3 (lower is better)
Translates to: AGSLPPSQVFTT*EFAPYTGVHQL
Trigger: CAGCTGGTGAACACCTGTGTAGGGGGCAAACTCCCAGGTGGTGAACACCTGTGAAGGGGGCAGACTCCCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR TCA 72 bp ATTCTGTGGGGCTTGAGGCTCCTGGCCCTGTACTCTTaGCTCACCAGCTGGGAGTCTGCCCCCTTCACAGGT +
Preference number: 3 (lower is better)
Translates to: ILWGLRLLALYS*LTSWESAPFTG
Trigger: ACCTGTGAAGGGGGCAGACTCCCAGCTGGTGAGTCAAGAGTACAGGGCCAGGAGCCTCAAGCCCCACAGAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR TCA 72 bp TGGCTTAAGGAGGCACCCAAAGGCCACACACCGGGGTaGTGCTACCGTGCCCACTCTGGAACTTCACACCTG +
Preference number: 3 (lower is better)
Translates to: WLKEAPKGHTPG*CYRAHSGTSHL
Trigger: CAGGTGTGAAGTTCCAGAGTGGGCACGGTAGCATCACCCCGGTGTGTGGCCTTTGGGTGCCTCCTTAAGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR GCA 72 bp TCTGCCCCCTTCACAGGTGTTCACCACCTGGGAGTTTaGCCCCTACACAGGTGTTCACCAGCTGTGCTGCCA +
Preference number: 3 (lower is better)
Translates to: SAPFTGVHHLGV*PLHRCSPAVLP
Trigger: TGGCAGCACAGCTGGTGAACACCTGTGTAGGGGGCAAACTCCCAGGTGGTGAACACCTGTGAAGGGGGCAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 72 bp TCTGCGTGTCCAGGCATGGGCTCAGCCTGTCTGTTCTaGTCATGGGTTGCTGGTGTCCTCTTGGGGCTCCTT +
Preference number: 3 (lower is better)
Translates to: SACPGMGSACLF*SWVAGVLLGLL
Trigger: AAGGAGCCCCAAGAGGACACCAGCAACCCATGAGCAGAACAGACAGGCTGAGCCCATGCCTGGACACGCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR CCA 72 bp CCAAGTAGGAGAGCACCCACACCCCCTTCATCCCAATaGTGGGCAGAGGCCTTTCTACCGAAAGCTTCTCCC +
Preference number: 3 (lower is better)
Translates to: PSRRAPTPPSSQ*WAEAFLPKASP
Trigger: GGGAGAAGCTTTCGGTAGAAAGGCCTCTGCCCACCATTGGGATGAAGGGGGTGTGGGTGCTCTCCTACTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR CCA 72 bp TGTCCAGGCATGGGCTCAGCCTGTCTGTTCTGCTCATaGGTTGCTGGTGTCCTCTTGGGGCTCCTTCTGGAT +
Preference number: 3 (lower is better)
Translates to: CPGMGSACLFCS*VAGVLLGLLLD
Trigger: ATCCAGAAGGAGCCCCAAGAGGACACCAGCAACCCATGAGCAGAACAGACAGGCTGAGCCCATGCCTGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR GCA 72 bp AGGCATGGGCTCAGCCTGTCTGTTCTGCTCATGGGTTaGTGGTGTCCTCTTGGGGCTCCTTCTGGATGTAAC +
Preference number: 3 (lower is better)
Translates to: RHGLSLSVLLMG*WCPLGAPSGCN
Trigger: GTTACATCCAGAAGGAGCCCCAAGAGGACACCAGCAACCCATGAGCAGAACAGACAGGCTGAGCCCATGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR GCA 72 bp CCTTCTGAGGGCTGGGGTTCTAAGAGTGTACCACTCTaGCCTGCTTATGTGGTTCCGAGGCTAAACCCCAGG +
Preference number: 3 (lower is better)
Translates to: PSEGWGSKSVPL*PAYVVPRLNPR
Trigger: CCTGGGGTTTAGCCTCGGAACCACATAAGCAGGGCAGAGTGGTACACTCTTAGAACCCCAGCCCTCAGAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR CCA 72 bp TGGTTTGGAAGATTGGCAGGCATGCATCCTTGCCGGTaGCTTCCTCCTAGCTCCCCAACTTCTGCACTGGAG +
Preference number: 3 (lower is better)
Translates to: WFGRLAGMHPCR*LPPSSPTSALE
Trigger: CTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAGCCACCGGCAAGGATGCATGCCTGCCAATCTTCCAAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CCA 72 bp AATAAGGCAGGCAGCCCTCACAGGGTTGCCTCAGCCTaGCTGTTCATGTCAAAAACCCACCTAGACCACCCC +
Preference number: 3 (lower is better)
Translates to: NKAGSPHRVASA*LFMSKTHLDHP
Trigger: GGGGTGGTCTAGGTGGGTTTTTGACATGAACAGCCAGGCTGAGGCAACCCTGTGAGGGCTGCCTGCCTTATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR GCA 72 bp CATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTaGAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGC +
Preference number: 3 (lower is better)
Translates to: HVHSNNSAERVA*SSASVFPFHCG
Trigger: GCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CCA 72 bp GGAACAAGCAGGAATACTGCCAGAAGGGCTAGAACCTaGCTACCTCGAAAGGGATCTGGGCTCAGGCAAGCA +
Preference number: 3 (lower is better)
Translates to: GTSRNTARRART*LPRKGSGLRQA
Trigger: TGCTTGCCTGAGCCCAGATCCCTTTCGAGGTAGCCAGGTTCTAGCCCTTCTGGCAGTATTCCTGCTTGTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CCA 72 bp CACTTCTGTCTAGCAAAGACTCTGCGTGTCCAGGCATaGGCTCAGCCTGTCTGTTCTGCTCATGGGTTGCTG +
Preference number: 3 (lower is better)
Translates to: HFCLAKTLRVQA*AQPVCSAHGLL
Trigger: CAGCAACCCATGAGCAGAACAGACAGGCTGAGCCCATGCCTGGACACGCAGAGTCTTTGCTAGACAGAAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR CAA 90 bp AGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTGGGTGGGGCATTCCTCTGCCCAATaGTGGGGCCTACAGCTGGCT +
Preference number: 3 (lower is better)
Translates to: SCPISRNICCGVPIIWVGHSSAQ*WGLQLA
Trigger: AGCCAGCTGTAGGCCCCACAATTGGGCAGAGGAATG...CCCCACCCAGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR TCA 72 bp TCTGGGCTCAGGCAAGCAGAGCACAGGGGCTCACAATaGCACAAGGAACCATTGGTTCCACACAGAGACACA +
Preference number: 3 (lower is better)
Translates to: SGLRQAEHRGSQ*HKEPLVPHRDT
Trigger: TGTGTCTCTGTGTGGAACCAATGGTTCCTTGTGTCATTGTGAGCCCCTGTGCTCTGCTTGCCTGAGCCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR TCA 72 bp TCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTaGGGCTCCTGGCCCTGTACTCTTGACTCACCAGCT +
Preference number: 3 (lower is better)
Translates to: SSQEQSTSFCGA*GSWPCTLDSPA
Trigger: AGCTGGTGAGTCAAGAGTACAGGGCCAGGAGCCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 72 bp TTCCCTCTGGAGGTGAGACACCAGCTCAGACACACCTaGAACTGCCTCTCCTTTTTCAACTACACCCTGCAG +
Preference number: 3 (lower is better)
Translates to: FPLEVRHQLRHT*NCLSFFNYTLQ
Trigger: CTGCAGGGTGTAGTTGAAAAAGGAGAGGCAGTTGCAGGTGTGTCTGAGCTGGTGTCTCACCTCCAGAGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 72 bp GAGTTTGCCCCCTACACAGGTGTTCACCAGCTGTGCTaGCAGCTGAAGACATTAGAAGTGTCTGGGAACAGC +
Preference number: 3 (lower is better)
Translates to: EFAPYTGVHQLC*QLKTLEVSGNS
Trigger: GCTGTTCCCAGACACTTCTAATGTCTTCAGCTGGCAGCACAGCTGGTGAACACCTGTGTAGGGGGCAAACTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 72 bp TGGGAGTTTGCCCCCTACACAGGTGTTCACCAGCTGTaGTGCCAGCTGAAGACATTAGAAGTGTCTGGGAAC +
Preference number: 3 (lower is better)
Translates to: WEFAPYTGVHQL*CQLKTLEVSGN
Trigger: GTTCCCAGACACTTCTAATGTCTTCAGCTGGCAGCACAGCTGGTGAACACCTGTGTAGGGGGCAAACTCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CCA 72 bp ACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTaGCCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACT +
Preference number: 3 (lower is better)
Translates to: TTMFTVTTVLNE*PAVPPPSFPST
Trigger: AGTGGAAGGGAAAGACGGAGGCGGAACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CCA 72 bp GAACTCCTGATCCTCCTGCCTCAACCTTCTGAGGGCTaGGGTTCTAAGAGTGTACCACTCTGCCCTGCTTAT +
Preference number: 3 (lower is better)
Translates to: ELLILLPQPSEG*GSKSVPLCPAY
Trigger: ATAAGCAGGGCAGAGTGGTACACTCTTAGAACCCCAGCCCTCAGAAGGTTGAGGCAGGAGGATCAGGAGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR-3UTR CAA 90 bp CTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTACATTCCTCTGCCCAATaGTGGGGCCTACAGCTGGCT +
Preference number: 3 (lower is better)
Translates to: LPPSSPTSALEFGECISLHSSAQ*WGLQLA
Trigger: AGCCAGCTGTAGGCCCCACAATTGGGCAGAGGAATG...TAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR TCA 72 bp CCCATGGGTCAAAAACACCTCACCACATGTAGGTCCTaGCTGATACTGCCCTGCTGGGACACATTAAGGGAC +
Preference number: 3 (lower is better)
Translates to: PMGQKHLTTCRS*LILPCWDTLRD
Trigger: GTCCCTTAATGTGTCCCAGCAGGGCAGTATCAGTCAGGACCTACATGTGGTGAGGTGTTTTTGACCCATGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR TCA 72 bp TCCAAAGCTGACTCGGGTCACAGCGGAGTCTTGAGGTaGCACTGCACAAGAACACACATGCATCAATGGCTG +
Preference number: 3 (lower is better)
Translates to: SKADSGHSGVLR*HCTRTHMHQWL
Trigger: CAGCCATTGATGCATGTGTGTTCTTGTGCAGTGTCACCTCAAGACTCCGCTGTGACCCGAGTCAGCTTTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR TCA 72 bp CTTGTCTGGTATGCGCAAGGCCCTGGGGTCCACTCCTaGCTCTACCCTCCCATAGAAGCAGAAGAAGAAAAA +
Preference number: 3 (lower is better)
Translates to: LVWYAQGPGVHS*LYPPIEAEEEK
Trigger: TTTTTCTTCTTCTGCTTCTATGGGAGGGTAGAGTCAGGAGTGGACCCCAGGGCCTTGCGCATACCAGACAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR GCA 72 bp GCCACAGAAACTACATTCCCATGCTTCTCCTCTGAGTaGTCAGCACTGGCTAACCCACATGCTGTAAGGCCA +
Preference number: 3 (lower is better)
Translates to: ATETTFPCFSSE*SALANPHAVRP
Trigger: TGGCCTTACAGCATGTGGGTTAGCCAGTGCTGAGCACTCAGAGGAGAAGCATGGGAATGTAGTTTCTGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR GCA 72 bp CCTTTCACTTCTGAGGGCCCAAGCCACGTACCAATATaGCTCTTGCCAACCACAAACCTGCCAGTATTTCCC +
Preference number: 3 (lower is better)
Translates to: PFTSEGPSHVPI*LLPTTNLPVFP
Trigger: GGGAAATACTGGCAGGTTTGTGGTTGGCAAGAGGCATATTGGTACGTGGCTTGGGCCCTCAGAAGTGAAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR CCA 72 bp TGTATCAGTTTACTCGTTCATTCCTCTGCCCAATTGTaGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTG +
Preference number: 3 (lower is better)
Translates to: CISLLVHSSAQL*GLQLAAFPLEV
Trigger: CACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAGGAATGAACGAGTAAACTGATACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CCA 72 bp GCCGGTGGCTTCCTCCTAGCTCCCCAACTTCTGCACTaGAGTTCGGGGAATGTATCAGTTTACTCGTTCATT +
Preference number: 3 (lower is better)
Translates to: AGGFLLAPQLLH*SSGNVSVYSFI
Trigger: AATGAACGAGTAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAGCCACCGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR TCA 72 bp TGTGGAGTCCCCATCATCTGGGTGGGGATAATGCTTTaGCCTCTTCACCTCATCCAAACCCAGGACATCTCA +
Preference number: 3 (lower is better)
Translates to: CGVPIIWVGIML*PLHLIQTQDIS
Trigger: TGAGATGTCCTGGGTTTGGATGAGGTGAAGAGGTCAAAGCATTATCCCCACCCAGATGATGGGGACTCCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 72 bp TTCCACCGGGGACCAAACACCACACAGTCCTCCCACTaGCCAGGATCTCACAATACAATAAGCAAAACACAG +
Preference number: 3 (lower is better)
Translates to: FHRGPNTTQSSH*PGSHNTISKTQ
Trigger: CTGTGTTTTGCTTATTGTATTGTGAGATCCTGGGCAGTGGGAGGACTGTGTGGTGTTTGGTCCCCGGTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 72 bp CTAAGCAGGCAGTTTGCCACAGAAACTACATTCCCATaGTTCTCCTCTGAGTGCTCAGCACTGGCTAACCCA +
Preference number: 3 (lower is better)
Translates to: LSRQFATETTFP*FSSECSALANP
Trigger: TGGGTTAGCCAGTGCTGAGCACTCAGAGGAGAAGCATGGGAATGTAGTTTCTGTGGCAAACTGCCTGCTTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR CCA 72 bp TCTACGTGTTGTGTCAGGCATTCTGAGACTCGGTACTaGCCCACGACCATGTTCACAGTAACAACAGTGCTG +
Preference number: 3 (lower is better)
Translates to: STCCVRHSETRY*PTTMFTVTTVL
Trigger: CAGCACTGTTGTTACTGTGAACATGGTCGTGGGCCAGTACCGAGTCTCAGAATGCCTGACACAACACGTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CCA 72 bp CAGAGCACAGGGGCTCACAATGACACAAGGAACCATTaGTTCCACACAGAGACACAAACAAGACCCATGGCT +
Preference number: 3 (lower is better)
Translates to: QSTGAHNDTRNH*FHTETQTRPMA
Trigger: AGCCATGGGTCTTGTTTGTGTCTCTGTGTGGAACCAATGGTTCCTTGTGTCATTGTGAGCCCCTGTGCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CAA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTTTATGGTTTGGAAGATaGGCAGGCATGCATCCTTGC +
Preference number: 3 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCLWFGR*AGMHPC
Trigger: GCAAGGATGCATGCCTGCCAATCTTCCAAACCATAA...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR-3UTR CAA 90 bp AGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTGGGTGGGGTTATGGTTTGGAAGATaGGCAGGCATGCATCCTTGC +
Preference number: 3 (lower is better)
Translates to: SCPISRNICCGVPIIWVGLWFGR*AGMHPC
Trigger: GCAAGGATGCATGCCTGCCAATCTTCCAAACCATAA...CCCCACCCAGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR TCA 72 bp AGTTCTCCAAAGCTGACTCGGGTCACAGCGGAGTCTTaGGGTGACACTGCACAAGAACACACATGCATCAAT +
Preference number: 3 (lower is better)
Translates to: SSPKLTRVTAES*GDTAQEHTCIN
Trigger: ATTGATGCATGTGTGTTCTTGTGCAGTGTCACCTCAAGACTCCGCTGTGACCCGAGTCAGCTTTGGAGAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CAA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGGGTGGGGATAATGCTTaGACCTCTTCACCTCATCCA +
Preference number: 3 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRGGDNA*TSSPHP
Trigger: TGGATGAGGTGAAGAGGTCAAAGCATTATCCCCACC...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 72 bp TTTCATTATCTCCTAGGCAGTGTGGCTTTTCCCTTCTaGCTACTTCCCTTGTCATGGGAGCCCAATTCAGGA +
Preference number: 3 (lower is better)
Translates to: FHYLLGSVAFPF*LLPLSWEPNSG
Trigger: TCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCACACTGCCTAGGAGATAATGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR CCA 72 bp AACTGGGTCCTGGAAATGAAGCCTAGTGGTCAGTTATaGAAGGCATCCCGTTCTACGTTCTACGTGTTGTGT +
Preference number: 3 (lower is better)
Translates to: NWVLEMKPSGQL*KASRSTFYVLC
Trigger: ACACAACACGTAGAACGTAGAACGGGATGCCTTCCATAACTGACCACTAGGCTTCATTTCCAGGACCCAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CAA 90 bp CTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTATGCCCCGATTCATACTaGCTTGGGAAAGTAAAACTA +
Preference number: 3 (lower is better)
Translates to: LPPSSPTSALEFGECISLCPDSY*LGKVKL
Trigger: TAGTTTTACTTTCCCAAGCAAGTATGAATCGGGGCA...TAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 72 bp CAGTCTTTGACCTCAAATACCACCAGGCAGCTTGACTaGTCTAACCGTACAGTAGTTCTGGTTCAACATGAC +
Preference number: 3 (lower is better)
Translates to: QSLTSNTTRQLD*SNRTVVLVQHD
Trigger: GTCATGTTGAACCAGAACTACTGTACGGTTAGAGCAGTCAAGCTGCCTGGTGGTATTTGAGGTCAAAGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR-3UTR CAA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGCAAAGGAATGTTGTTTaGCCCCGATTCATACTTGCT +
Preference number: 3 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRQRNVV*PRFILA
Trigger: AGCAAGTATGAATCGGGGCAAAACAACATTCCTTTG...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CAA 90 bp TACAATAAGCAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTCAAAGGAATGTTGTTTaGCCCCGATTCATACTTGCT +
Preference number: 3 (lower is better)
Translates to: YNKQNTERPSPKASPQTLQRNVV*PRFILA
Trigger: AGCAAGTATGAATCGGGGCAAAACAACATTCCTTTG...AAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTGCTTATTGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CAA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTAAATTCAAAGGAATGTaGTTTTGCCCCGATTCATAC +
Preference number: 3 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCKFKGM*FCPDSY
Trigger: GTATGAATCGGGGCAAAACAACATTCCTTTGAATTT...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR TCA 72 bp AACCAAACATGCTGGAACAAGACTAGAACCTTGAACTaGTACTGTCAAGAAGATATGAGAGGGCTGGGGGTG +
Preference number: 3 (lower is better)
Translates to: NQTCWNKTRTLN*YCQEDMRGLGV
Trigger: CACCCCCAGCCCTCTCATATCTTCTTGACAGTATCAGTTCAAGGTTCTAGTCTTGTTCCAGCATGTTTGGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR GCA 72 bp ACCATTTCTAACAGCTGTCCCATTTCCAGAAATATATaGTGTGGAGTCCCCATCATCTGGGTGGGGATAATG +
Preference number: 3 (lower is better)
Translates to: TISNSCPISRNI*CGVPIIWVGIM
Trigger: CATTATCCCCACCCAGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCTGTTAGAAATGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CCA 72 bp CACACAGAGACACAAACAAGACCCATGGCTTCTAGATaGCGATGCTTTGCAACTTTGTTAGCATCAACCAAG +
Preference number: 3 (lower is better)
Translates to: HTETQTRPMASR*RCFATLLASTK
Trigger: CTTGGTTGATGCTAACAAAGTTGCAAAGCATCGCCATCTAGAAGCCATGGGTCTTGTTTGTGTCTCTGTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CCA 72 bp GATACCTACCTTACATGCATAGAGCCAGGCCCATGGTaGGAACACATGATGCTATTTCTCCTCCTAAGAAAT +
Preference number: 3 (lower is better)
Translates to: DTYLTCIEPGPW*EHMMLFLLLRN
Trigger: ATTTCTTAGGAGGAGAAATAGCATCATGTGTTCCCACCATGGGCCTGGCTCTATGCATGTAAGGTAGGTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR-3UTR CAA 90 bp TCCTCCCACTGCCCAGGATCTCACAATACAATAAGCAAAACACAGAACGTCCTTTGCCCCGATTCATACTaGCTTGGGAAAGTAAAACTA +
Preference number: 3 (lower is better)
Translates to: SSHCPGSHNTISKTQNVLCPDSY*LGKVKL
Trigger: TAGTTTTACTTTCCCAAGCAAGTATGAATCGGGGCA...AAGGACGTTCTGTGTTTTGCTTATTGTATTGTGAGATCCTGGGCAGTGGGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 72 bp CACAGTGTGGAAGTGTCCCAGCCCAATCTATTAAAGTaGAAATTAAAGGGAAACTGGGTCCTGGAAATGAAG +
Preference number: 3 (lower is better)
Translates to: HSVEVSQPNLLK*KLKGNWVLEMK
Trigger: CTTCATTTCCAGGACCCAGTTTCCCTTTAATTTGCACTTTAATAGATTGGGCTGGGACACTTCCACACTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CAA 90 bp ATTTGGGCCAAACTTGTGAGTCAACAAGCAATTTTGGAACTCACAGGACACTTTTTATGGTTTGGAAGATaGGCAGGCATGCATCCTTGC +
Preference number: 3 (lower is better)
Translates to: IWAKLVSQQAILELTGHFLWFGR*AGMHPC
Trigger: GCAAGGATGCATGCCTGCCAATCTTCCAAACCATAA...AAAGTGTCCTGTGAGTTCCAAAATTGCTTGTTGACTCACAAGTTTGGCCCAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR GCA 72 bp GTCATGGGAGCCCAATTCAGGACTGTGACACTTTTATaGACACAAATTATCCATTCTGAGCACTTCTGTCTA +
Preference number: 3 (lower is better)
Translates to: VMGAQFRTVTLL*TQIIHSEHFCL
Trigger: TAGACAGAAGTGCTCAGAATGGATAATTTGTGTGCATAAAAGTGTCACAGTCCTGAATTGGGCTCCCATGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR CCA 72 bp CTGATACTGCCCTGCTGGGACACATTAAGGGACACCTaGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTT +
Preference number: 3 (lower is better)
Translates to: LILPCWDTLRDT*MLLKKFKGMLF
Trigger: AAACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTCCCAGCAGGGCAGTATCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR-3UTR CAA 90 bp AGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATATGCGGTGGGGATAATGCTTaGACCTCTTCACCTCATCCA +
Preference number: 3 (lower is better)
Translates to: RNTYRTISNSCPISRNICGGDNA*TSSPHP
Trigger: TGGATGAGGTGAAGAGGTCAAAGCATTATCCCCACC...GCATATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR TCA 72 bp GAAAACTTTCACTCCGTTCTATTTGGGCCAAACTTGTaGGTCAACAAGCAATTTTGGAACTCACAGGACACT +
Preference number: 3 (lower is better)
Translates to: ENFHSVLFGPNL*VNKQFWNSQDT
Trigger: AGTGTCCTGTGAGTTCCAAAATTGCTTGTTGACTCACAAGTTTGGCCCAAATAGAACGGAGTGAAAGTTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR CCA 72 bp AATAACATTCTCATGATGGGTCTCACACAGTCAACCTaGGTGTCAGCATTAAAGGTATACAGAACAAGATCC +
Preference number: 3 (lower is better)
Translates to: NNILMMGLTQST*VSALKVYRTRS
Trigger: GGATCTTGTTCTGTATACCTTTAATGCTGACACCCAGGTTGACTGTGTGAGACCCATCATGAGAATGTTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
3UTR CAA 72 bp AGAGGGCTGGGGGTGTGCAGATCCACAGGGCGGCACTaGTCTGGTATGCGCAAGGCCCTGGGGTCCACTCCT +
Preference number: 4 (lower is better)
Translates to: RGLGVCRSTGRH*SGMRKALGSTP
Trigger: AGGAGTGGACCCCAGGGCCTTGCGCATACCAGACAAGTGCCGCCCTGTGGATCTGCACACCCCCAGCCCTCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp ACCCCAAGTAGGAGAGCACCCACACCCCCTTCATCCCAATGGTGGGCAGAGGCCGGTTCCAGAGCAGGGTaGGAGGCTTGGCGGGACACC +
Preference number: 4 (lower is better)
Translates to: TPSRRAPTPPSSQWWAEAGSRAG*EAWRDT
Trigger: GGTGTCCCGCCAAGCCTCCCACCCTGCTCTGGAACC...GGCCTCTGCCCACCATTGGGATGAAGGGGGTGTGGGTGCTCTCCTACTTGGGGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp GCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACACACCTGCAACTGCCTCGTGCCACGCCCAGGATaGGCAAGAGGCCACCTCCTG +
Preference number: 4 (lower is better)
Translates to: AAFPLEVRHQLRHTCNCLVPRPG*ARGHLL
Trigger: CAGGAGGTGGCCTCTTGCTCATCCTGGGCGTGGCAC...GAGGCAGTTGCAGGTGTGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp CCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTGTGCCACGCCCAGGATaGGCAAGAGGCCACCTCCTG +
Preference number: 4 (lower is better)
Translates to: PIVGPTAGCFPSGGETPAVPRPG*ARGHLL
Trigger: CAGGAGGTGGCCTCTTGCTCATCCTGGGCGTGGCAC...AGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp ACCCCAAGTAGGAGAGCACCCACACCCCCTTCATCCCAATGGTGGGCAGAGGCCCCTCTGCCCAGCGTCTaGGCCATGTTCTCGAGTGTA +
Preference number: 4 (lower is better)
Translates to: TPSRRAPTPPSSQWWAEAPLPSV*AMFSSV
Trigger: TACACTCGAGAACATGGCTCAGACGCTGGGCAGAGG...GGCCTCTGCCCACCATTGGGATGAAGGGGGTGTGGGTGCTCTCCTACTTGGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp ACCCCAAGTAGGAGAGCACCCACACCCCCTTCATCCCAATGGTGGGCAGAGGCCGGCTCCCTTGGCCTGTaGGGGACTAGGGTAGAAGAT +
Preference number: 4 (lower is better)
Translates to: TPSRRAPTPPSSQWWAEAGSLGL*GTRVED
Trigger: ATCTTCTACCCTAGTCCCTCACAGGCCAAGGGAGCC...GGCCTCTGCCCACCATTGGGATGAAGGGGGTGTGGGTGCTCTCCTACTTGGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp AACGAGTGGCCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACGCCCTCACGGTACAGCTGTTaGCTGGGGTTAGAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: NEWPAVPPPSFPSTVATPSRYSC*LGLEVA
Trigger: TGCCACCTCTAACCCCAGTCAACAGCTGTACCGTGA...GGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGGCCACTCGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp AGTGCTCTGAGCCAGATGTCCGGGGAAGTGGCTCAGAGAAACGGGGGCCTCCCTCCAGCCACTTGCGTGTaGACAGTCCCTTCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: SALSQMSGEVAQRNGGLPPATCV*TVPSSG
Trigger: CCCAGAAGAAGGGACTGTGCACACGCAAGTGGCTGG...AGGGAGGCCCCCGTTTCTCTGAGCCACTTCCCCGGACATCTGGCTCAGAGCACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp ACCCCAAGTAGGAGAGCACCCACACCCCCTTCATCCCAATGGTGGGCAGAGGCCGGTCTGTGTGGTCACTaGAAGTCCTCTGCCCAGCGT +
Preference number: 4 (lower is better)
Translates to: TPSRRAPTPPSSQWWAEAGLCGH*KSSAQR
Trigger: ACGCTGGGCAGAGGACTTCCAGTGACCACACAGACC...GGCCTCTGCCCACCATTGGGATGAAGGGGGTGTGGGTGCTCTCCTACTTGGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CTCTGCCCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACATGTGGCTGGAAGGGCTaGCCCCGTGGAGAACCCTGT +
Preference number: 4 (lower is better)
Translates to: LCPIVGPTAGCFPSGGETCGWKG*PRGEPC
Trigger: ACAGGGTTCTCCACGGGGCCAGCCCTTCCAGCCACA...TGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CTACGTGGGAGTCTGAGAATAAGGCAGGCAGCCCTCACAGGGTTGCCTCAGCCTACTGGTGCTTGTGGCTaGAAGGGCTGGCCCCGTGGA +
Preference number: 4 (lower is better)
Translates to: LRGSLRIRQAALTGLPQPTGACG*KGWPRG
Trigger: TCCACGGGGCCAGCCCTTCCAGCCACAAGCACCAGT...AGGCTGAGGCAACCCTGTGAGGGCTGCCTGCCTTATTCTCAGACTCCCACGTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp GCATGCATCCTTGCCGGTGGCTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTAGACGATGGGTGGTCTaGGGGAGGAGGGTGACTCTG +
Preference number: 4 (lower is better)
Translates to: ACILAGGFLLAPQLLHWSRRWVV*GRRVTL
Trigger: CAGAGTCACCCTCCTCCCTCAGACCACCCATCGTCT...ACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAGCCACCGGCAAGGATGCATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp CTCTGCCCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACTGTTGTGCAGCGTGTaGGGACTGAGTCAAGCCCCC +
Preference number: 4 (lower is better)
Translates to: LCPIVGPTAGCFPSGGETLLCSV*GLSQAP
Trigger: GGGGGCTTGACTCAGTCCTCACACGCTGCACAACAG...TGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR TCA 90 bp AGTGCTCTGAGCCAGATGTCCGGGGAAGTGGCTCAGAGAAACGGGGGCCTCCCTTCACGGTACAGCTGTTaGCTGGGGTTAGAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: SALSQMSGEVAQRNGGLPSRYSC*LGLEVA
Trigger: TGCCACCTCTAACCCCAGTCAACAGCTGTACCGTGA...AGGGAGGCCCCCGTTTCTCTGAGCCACTTCCCCGGACATCTGGCTCAGAGCACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp CCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAAGAGGCCACCTCCTaGGGCTGCGATCACCACAGT +
Preference number: 4 (lower is better)
Translates to: PIVGPTAGCFPSGGETPAQEATS*GCDHHS
Trigger: ACTGTGGTGATCGCAGCCGCAGGAGGTGGCCTCTTG...AGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp CTCTGCCCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACAAGAGGCCACCTCCTaGGGCTGCGATCACCACAGT +
Preference number: 4 (lower is better)
Translates to: LCPIVGPTAGCFPSGGETQEATS*GCDHHS
Trigger: ACTGTGGTGATCGCAGCCGCAGGAGGTGGCCTCTTG...TGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp GCATGCATCCTTGCCGGTGGCTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTTCTCGGCCCCACTCTTaGGAGCGAGGATTCTTGGGG +
Preference number: 4 (lower is better)
Translates to: ACILAGGFLLAPQLLHWSSRPHS*ERGFLG
Trigger: CCCCAAGAATCCTCGCTCGCAAGAGTGGGGCCGAGA...ACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAGCCACCGGCAAGGATGCATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp GCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACACACCTGCAACTGCCTCGCTCCGGGTGGACATTaGAGACGTGTGAGGTGTGCG +
Preference number: 4 (lower is better)
Translates to: AAFPLEVRHQLRHTCNCLAPGGH*RRVRCA
Trigger: CGCACACCTCACACGTCTGCAATGTCCACCCGGAGC...GAGGCAGTTGCAGGTGTGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp AGTGCTCTGAGCCAGATGTCCGGGGAAGTGGCTCAGAGAAACGGGGGCCTCCCTGAACCGGTGACTCTGTaGAAGACTGAGCAGGCTCGT +
Preference number: 4 (lower is better)
Translates to: SALSQMSGEVAQRNGGLPEPVTL*KTEQAR
Trigger: ACGAGCCTGCTCAGTCTTCCACAGAGTCACCGGTTC...AGGGAGGCCCCCGTTTCTCTGAGCCACTTCCCCGGACATCTGGCTCAGAGCACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp AACGAGTGGCCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACGCCCTGCTCTTTGTCTGGGTaGCTGATGGGTTTTGGAGAG +
Preference number: 4 (lower is better)
Translates to: NEWPAVPPPSFPSTVATPCSLSG*LMGFGE
Trigger: CTCTCCAAAACCCATCAGTCACCCAGACAAAGAGCA...GGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGGCCACTCGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR TCA 90 bp GCATGCATCCTTGCCGGTGGCTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTCCTCTGCCCAGCGTCTaGGCCATGTTCTCGAGTGTA +
Preference number: 4 (lower is better)
Translates to: ACILAGGFLLAPQLLHWSPLPSV*AMFSSV
Trigger: TACACTCGAGAACATGGCTCAGACGCTGGGCAGAGG...ACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAGCCACCGGCAAGGATGCATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp ACCCCAAGTAGGAGAGCACCCACACCCCCTTCATCCCAATGGTGGGCAGAGGCCCTGGGCATCTGCAGGTaGACGATCCCTGAGTATTGT +
Preference number: 4 (lower is better)
Translates to: TPSRRAPTPPSSQWWAEALGICR*TIPEYC
Trigger: ACAATACTCAGGGATCGTTCACCTGCAGATGCCCAG...GGCCTCTGCCCACCATTGGGATGAAGGGGGTGTGGGTGCTCTCCTACTTGGGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp AACGAGTGGCCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACGCCCACAGGTAACAATGAGTaGCACGCCCAGGATGAGCAA +
Preference number: 4 (lower is better)
Translates to: NEWPAVPPPSFPSTVATPTGNNE*HAQDEQ
Trigger: TTGCTCATCCTGGGCGTGGCACTCATTGTTACCTGT...GGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGGCCACTCGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CTCTGCCCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACAGGTCTGTGTGGTCACTaGAAGTCCTCTGCCCAGCGT +
Preference number: 4 (lower is better)
Translates to: LCPIVGPTAGCFPSGGETGLCGH*KSSAQR
Trigger: ACGCTGGGCAGAGGACTTCCAGTGACCACACAGACC...TGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACGCCCCTCAAGCGTGGGTTTCTCTTGTTGTaGGGTACTCTGGTTCTTGGG +
Preference number: 4 (lower is better)
Translates to: PAVPPPSFPSTVATPLKRGFLLL*GTLVLG
Trigger: CCCAAGAACCAGAGTACCCCACAACAAGAGAAACCC...ACGCTTGAGGGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp AACGAGTGGCCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACGCCCTCTCGTGCATTTCAATaGCTTCTCGGCCCCACTCTT +
Preference number: 4 (lower is better)
Translates to: NEWPAVPPPSFPSTVATPSRAFQ*LLGPTL
Trigger: AAGAGTGGGGCCGAGAAGCCATTGAAATGCACGAGA...GGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGGCCACTCGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TGGAGTCCCCATCATCTGGGTGGGGATAATGCTTTGACCTCTTCACCTCATCCAGTGCCACGCCCAGGATaGGCAAGAGGCCACCTCCTG +
Preference number: 4 (lower is better)
Translates to: WSPHHLGGDNALTSSPHPVPRPG*ARGHLL
Trigger: CAGGAGGTGGCCTCTTGCTCATCCTGGGCGTGGCAC...TGGATGAGGTGAAGAGGTCAAAGCATTATCCCCACCCAGATGATGGGGACTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp CACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTGCAGTTCCGCCGACATTGCAGACGTGTaGGGTGTGCGAGCCCCCGAA +
Preference number: 4 (lower is better)
Translates to: HDHVHSNNSAERVACSSADIADV*GVRAPE
Trigger: TTCGGGGGCTCGCACACCTCACACGTCTGCAATGTC...GGCGGAACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp GTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACATTTGTGACCTGGAACTaGTGGGTGACTCAGGAAGGC +
Preference number: 4 (lower is better)
Translates to: VGPTAGCFPSGGETPAQTFVTWN*WVTQEG
Trigger: GCCTTCCTGAGTCACCCAGCAGTTCCAGGTCACAAA...TGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp GCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACACACCTGCAACTGCCTCGGAAGTAGCCAGACTTaGACTGACAGAGCGCGACAC +
Preference number: 4 (lower is better)
Translates to: AAFPLEVRHQLRHTCNCLGSSQT*TDRARH
Trigger: GTGTCGCGCTCTGTCAGTGCAAGTCTGGCTACTTCC...GAGGCAGTTGCAGGTGTGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp CACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTGCAGTTCCGCCTCTCGGCCCCACTCTTaGGAGCGAGGATTCTTGGGG +
Preference number: 4 (lower is better)
Translates to: HDHVHSNNSAERVACSSASRPHS*ERGFLG
Trigger: CCCCAAGAATCCTCGCTCGCAAGAGTGGGGCCGAGA...GGCGGAACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CTACGTGGGAGTCTGAGAATAAGGCAGGCAGCCCTCACAGGGTTGCCTCAGCCTGAGTCGTCTGGGGCATaGCAGATGTCAAAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: LRGSLRIRQAALTGLPQPESSGA*QMSKLE
Trigger: CTCCAGCTTTGACATCTGCCATGCCCCAGACGACTC...AGGCTGAGGCAACCCTGTGAGGGCTGCCTGCCTTATTCTCAGACTCCCACGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTAGCTGGCCTCACGGCCCAGCTCTGTaGTCCTTTCTCCTGCTGACG +
Preference number: 4 (lower is better)
Translates to: QNTERPSPKASPQTLSWPHGPAL*SFLLLT
Trigger: CGTCAGCAGGAGAAAGGACCACAGAGCTGGGCCGTG...AGGCCAGCTAAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp GCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACACACCTGCAACTGCCTCCAGTCCAGTGTAGGCTaGGTACAGTCCGTTGCGTTC +
Preference number: 4 (lower is better)
Translates to: AAFPLEVRHQLRHTCNCLQSSVG*VQSVAF
Trigger: GAACGCAACGGACTGTACCCAGCCTACACTGGACTG...GAGGCAGTTGCAGGTGTGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp CCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACGCCCCTCAAGCGTCACAACTACAGCACCTaGAGTCAAAGCTTCTACATG +
Preference number: 4 (lower is better)
Translates to: PAVPPPSFPSTVATPLKRHNYST*SQSFYM
Trigger: CATGTAGAAGCTTTGACTTCAGGTGCTGTAGTTGTG...ACGCTTGAGGGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp GCATGCATCCTTGCCGGTGGCTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTTTTGTGACCTGGAACTaGTGGGTGACTCAGGAAGGC +
Preference number: 4 (lower is better)
Translates to: ACILAGGFLLAPQLLHWSFVTWN*WVTQEG
Trigger: GCCTTCCTGAGTCACCCAGCAGTTCCAGGTCACAAA...ACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAGCCACCGGCAAGGATGCATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp TGGCCCACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTGCAGTTCAAGAGGCCACCTCCTaGGGCTGCGATCACCACAGT +
Preference number: 4 (lower is better)
Translates to: WPTTMFTVTTVLNEWPAVQEATS*GCDHHS
Trigger: ACTGTGGTGATCGCAGCCGCAGGAGGTGGCCTCTTG...AACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTGGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp GTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACAGTGCTTCCGTTCTCGTaGATTTCAATGGCTTCTCGG +
Preference number: 4 (lower is better)
Translates to: VGPTAGCFPSGGETPAQTVLPFS*ISMASR
Trigger: CCGAGAAGCCATTGAAATGCACGAGAACGGAAGCAC...TGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CTCTGCCCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACATGTAGGTTGGCAGGTTaGACGTATGCAGAACCGGTG +
Preference number: 4 (lower is better)
Translates to: LCPIVGPTAGCFPSGGETCRLAG*TYAEPV
Trigger: CACCGGTTCTGCATACGTCCAACCTGCCAACCTACA...TGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CTCTGCCCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACAACAGAGTACTGGGACTaGTCACAGGAGAGTGAGTCG +
Preference number: 4 (lower is better)
Translates to: LCPIVGPTAGCFPSGGETTEYWD*SQESES
Trigger: CGACTCACTCTCCTGTGACCAGTCCCAGTACTCTGT...TGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TGCGTGTCCAGGCATGGGCTCAGCCTGTCTGTTCTGCTCATGGGTTGCTGGTGTGTTTTCTGGGCCTTCTaGGGAACTGTGGCTCATTCT +
Preference number: 4 (lower is better)
Translates to: CVSRHGLSLSVLLMGCWCVFWAF*GTVAHS
Trigger: AGAATGAGCCACAGTTCCTCAGAAGGCCCAGAAAAC...ACACCAGCAACCCATGAGCAGAACAGACAGGCTGAGCCCATGCCTGGACACGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR TCA 90 bp GGCAGTTTGCCACAGAAACTACATTCCCATGCTTCTCCTCTGAGTGCTCAGCACAGACGATGGGTGGTCTaGGGGAGGAGGGTGACTCTG +
Preference number: 4 (lower is better)
Translates to: GSLPQKLHSHASPLSAQHRRWVV*GRRVTL
Trigger: CAGAGTCACCCTCCTCCCTCAGACCACCCATCGTCT...GTGCTGAGCACTCAGAGGAGAAGCATGGGAATGTAGTTTCTGTGGCAAACTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTCTGGTCACAGGAGAGTaGGTCGTCTGGGGCATGGCA +
Preference number: 4 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCLVTGE*VVWGMA
Trigger: TGCCATGCCCCAGACGACTCACTCTCCTGTGACCAG...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp AACGAGTGGCCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACGCCCTCTGAGCAGCAAAGGTaGTATATCTGGAAGTCAACA +
Preference number: 4 (lower is better)
Translates to: NEWPAVPPPSFPSTVATPSEQQR*YIWKST
Trigger: TGTTGACTTCCAGATATATCACCTTTGCTGCTCAGA...GGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGGCCACTCGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp GAAGTGTCTGGGAACAGCCACCACACTGGCTCTTCCCATAGCAATGAGGCCTGGCAGGTGAACGATCCCTaGGTATTGTTGCACGTGGCT +
Preference number: 4 (lower is better)
Translates to: EVSGNSHHTGSSHSNEAWQVNDP*VLLHVA
Trigger: AGCCACGTGCAACAATACTCAGGGATCGTTCACCTG...CCAGGCCTCATTGCTATGGGAAGAGCCAGTGTGGTGGCTGTTCCCAGACACTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp AGGCTGGAACTAGGAAGACCCTCCTTTTTAACCCTGTTCCTGATGCCCCCAGGAGCGATGTCCGCTCTGTaGGAGGAAGCCATGTTGCTC +
Preference number: 4 (lower is better)
Translates to: RLELGRPSFLTLFLMPPGAMSAL*EEAMLL
Trigger: GAGCAACATGGCTTCCTCCCACAGAGCGGACATCGC...TCCTGGGGGCATCAGGAACAGGGTTAAAAAGGAGGGTCTTCCTAGTTCCAGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR CCA 90 bp CCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTATTGCCGTCGACATTTaGACTGAAGTCACACGTGGC +
Preference number: 4 (lower is better)
Translates to: PIVGPTAGCFPSGGETPAIAVDI*TEVTRG
Trigger: GCCACGTGTGACTTCAGTCCAAATGTCGACGGCAAT...AGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTCTAAACTGGTGCTTGTaGCTGGAAGGGCTGGCCCCG +
Preference number: 4 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCLNWCL*LEGLAP
Trigger: CGGGGCCAGCCCTTCCAGCCACAAGCACCAGTTTAG...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp AGTGCTCTGAGCCAGATGTCCGGGGAAGTGGCTCAGAGAAACGGGGGCCTCCCTGATGGTGTAAGAAAATaGGATGGACTGGACTCTTCC +
Preference number: 4 (lower is better)
Translates to: SALSQMSGEVAQRNGGLPDGVRK*DGLDSS
Trigger: GGAAGAGTCCAGTCCATCCCATTTTCTTACACCATC...AGGGAGGCCCCCGTTTCTCTGAGCCACTTCCCCGGACATCTGGCTCAGAGCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR CAA 72 bp GCCTGTCTGTTCTGCTCATGGGTTGCTGGTGTCCTCTaGGGGCTCCTTCTGGATGTAACCCCAAGTAGGAGA +
Preference number: 4 (lower is better)
Translates to: ACLFCSWVAGVL*GLLLDVTPSRR
Trigger: TCTCCTACTTGGGGTTACATCCAGAAGGAGCCCCAAGAGGACACCAGCAACCCATGAGCAGAACAGACAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TGGCCCACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTGCAGTTGCTCTCGCTGGCCTCTaGGTAGGAGGTGTTATCTGT +
Preference number: 4 (lower is better)
Translates to: WPTTMFTVTTVLNEWPAVALAGL*VGGVIC
Trigger: ACAGATAACACCTCCTACTCAGAGGCCAGCGAGAGC...AACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTGGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp CCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTTGGGAAGGTTGTTTGTaGGACAGAATATGGGGCAAG +
Preference number: 4 (lower is better)
Translates to: PIVGPTAGCFPSGGETPAWEGCL*DRIWGK
Trigger: CTTGCCCCATATTCTGTCTCACAAACAACCTTCCCA...AGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp AACGAGTGGCCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACGCCCATCTGTGGTTTGAGGTaGAGATGGTGTAAGAAAATG +
Preference number: 4 (lower is better)
Translates to: NEWPAVPPPSFPSTVATPICGLR*RWCKKM
Trigger: CATTTTCTTACACCATCTTCACCTCAAACCACAGAT...GGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGGCCACTCGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp AGGCTGGAACTAGGAAGACCCTCCTTTTTAACCCTGTTCCTGATGCCCCCAGGAGATACCCACGGCCAGTaGGGTCCACAATGCATTTGC +
Preference number: 4 (lower is better)
Translates to: RLELGRPSFLTLFLMPPGDTHGQ*GPQCIC
Trigger: GCAAATGCATTGTGGACCTCACTGGCCGTGGGTATC...TCCTGGGGGCATCAGGAACAGGGTTAAAAAGGAGGGTCTTCCTAGTTCCAGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp GAAGTGTCTGGGAACAGCCACCACACTGGCTCTTCCCATAGCAATGAGGCCTGGCATGCTCGGCAAGAGTaGTCCATCTTGTTGAACTGG +
Preference number: 4 (lower is better)
Translates to: EVSGNSHHTGSSHSNEAWHARQE*SILLNW
Trigger: CCAGTTCAACAAGATGGATCACTCTTGCCGAGCATG...CCAGGCCTCATTGCTATGGGAAGAGCCAGTGTGGTGGCTGTTCCCAGACACTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp CTCTGCCCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACAGAGGGGGCATCACTTTaGCAGTGTATAGATGGAAGT +
Preference number: 4 (lower is better)
Translates to: LCPIVGPTAGCFPSGGETEGASL*QCIDGS
Trigger: ACTTCCATCTATACACTGGCAAAGTGATGCCCCCTC...TGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR GCA 90 bp TGCGTGTCCAGGCATGGGCTCAGCCTGTCTGTTCTGCTCATGGGTTGCTGGTGTCTGGTTCTTGGGGTTTaGTGTTTGATTGCTGGGGAT +
Preference number: 4 (lower is better)
Translates to: CVSRHGLSLSVLLMGCWCLVLGV*CLIAGD
Trigger: ATCCCCAGCAATCAAACAGCAAACCCCAAGAACCAG...ACACCAGCAACCCATGAGCAGAACAGACAGGCTGAGCCCATGCCTGGACACGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp CCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTTTTCTGGATCCTGTCTaGCAGGTCAAACAGTGTCAC +
Preference number: 4 (lower is better)
Translates to: PIVGPTAGCFPSGGETPAFLDPV*QVKQCH
Trigger: GTGACACTGTTTGACCTGGCAGACAGGATCCAGAAA...AGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp CTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTATCTCGGCCCCACTCTTaGGAGCGAGGATTCTTGGGG +
Preference number: 4 (lower is better)
Translates to: LPPSSPTSALEFGECISLSRPHS*ERGFLG
Trigger: CCCCAAGAATCCTCGCTCGCAAGAGTGGGGCCGAGA...TAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp GGGTCTCACACAGTCAACCTGGGTGTCAGCATTAAAGGTATACAGAACAAGATCGACTCCGAGAGTTGGTaGCCCGGACAGCAGGCCAGC +
Preference number: 4 (lower is better)
Translates to: GSHTVNLGVSIKGIQNKIDSESW*PGQQAS
Trigger: GCTGGCCTGCTGTCCGGGGCACCAACTCTCGGAGTC...GATCTTGTTCTGTATACCTTTAATGCTGACACCCAGGTTGACTGTGTGAGACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTCACAGTCCCTTCTTCTaGGAGCTCCCTCGTCCTCTC +
Preference number: 4 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCHSPFF*ELPRPL
Trigger: GAGAGGACGAGGGAGCTCCCAGAAGAAGGGACTGTG...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp GAAGTGTCTGGGAACAGCCACCACACTGGCTCTTCCCATAGCAATGAGGCCTGGGGGTTTCTCTTGTTGTaGGGTACTCTGGTTCTTGGG +
Preference number: 4 (lower is better)
Translates to: EVSGNSHHTGSSHSNEAWGFLLL*GTLVLG
Trigger: CCCAAGAACCAGAGTACCCCACAACAAGAGAAACCC...CCAGGCCTCATTGCTATGGGAAGAGCCAGTGTGGTGGCTGTTCCCAGACACTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGTGTGGCTGGAAGGGCTaGCCCCGTGGAGAACCCTGT +
Preference number: 4 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRCGWKG*PRGEPC
Trigger: ACAGGGTTCTCCACGGGGCCAGCCCTTCCAGCCACA...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp ACCCCAAGTAGGAGAGCACCCACACCCCCTTCATCCCAATGGTGGGCAGAGGCCCTAGGATTTCAGGATTaGTTGGGAGATGTGGTTTCT +
Preference number: 4 (lower is better)
Translates to: TPSRRAPTPPSSQWWAEALGFQD*LGDVVS
Trigger: AGAAACCACATCTCCCAACCAATCCTGAAATCCTAG...GGCCTCTGCCCACCATTGGGATGAAGGGGGTGTGGGTGCTCTCCTACTTGGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTTGTAAGAAAATGGGATaGACTGGACTCTTCCGCACG +
Preference number: 4 (lower is better)
Translates to: PIVGPTAGCFPSGGETPACKKMG*TGLFRT
Trigger: CGTGCGGAAGAGTCCAGTCCATCCCATTTTCTTACA...AGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTAGCTGGCCTCAAACAGTGTCACATTaGAGGCCAGGGCAAAGGTGG +
Preference number: 4 (lower is better)
Translates to: QNTERPSPKASPQTLSWPQTVSH*RPGQRW
Trigger: CCACCTTTGCCCTGGCCTCCAATGTGACACTGTTTG...AGGCCAGCTAAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp AGGCTGGAACTAGGAAGACCCTCCTTTTTAACCCTGTTCCTGATGCCCCCAGGACAGTCCAGTGTAGGCTaGGTACAGTCCGTTGCGTTC +
Preference number: 4 (lower is better)
Translates to: RLELGRPSFLTLFLMPPGQSSVG*VQSVAF
Trigger: GAACGCAACGGACTGTACCCAGCCTACACTGGACTG...TCCTGGGGGCATCAGGAACAGGGTTAAAAAGGAGGGTCTTCCTAGTTCCAGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp GCATGCATCCTTGCCGGTGGCTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTGTCGCTGATGAAAGATaGGTTATACTGTCCCGGGAA +
Preference number: 4 (lower is better)
Translates to: ACILAGGFLLAPQLLHWSVADER*VILSRE
Trigger: TTCCCGGGACAGTATAACCCATCTTTCATCAGCGAC...ACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAGCCACCGGCAAGGATGCATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp ACGACACAGTGTGGAAGTGTCCCAGCCCAATCTATTAAAGTGCAAATTAAAGGGCAGTTGGCGCCGTGGTaGTCTCAGGGGAGGGTCCAC +
Preference number: 4 (lower is better)
Translates to: TTQCGSVPAQSIKVQIKGQLAPW*SQGRVH
Trigger: GTGGACCCTCCCCTGAGATCACCACGGCGCCAACTG...CCCTTTAATTTGCACTTTAATAGATTGGGCTGGGACACTTCCACACTGTGTCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR TCA 90 bp ACCACACTGGCTCTTCCCATAGCAATGAGGCCTGGAACAAGCAGGAATACTGCCCTTTGTCTGGGTGACTaGTGGGTTTTGGAGAGCGGT +
Preference number: 4 (lower is better)
Translates to: TTLALPIAMRPGTSRNTALCLGD*WVLESG
Trigger: ACCGCTCTCCAAAACCCATCAGTCACCCAGACAAAG...GGCAGTATTCCTGCTTGTTCCAGGCCTCATTGCTATGGGAAGAGCCAGTGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR TCA 90 bp CTCTGCCCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACAATGCATTTGCCATCATaGAGACAAGGGTTCACGGTA +
Preference number: 4 (lower is better)
Translates to: LCPIVGPTAGCFPSGGETMHLPS*RQGFTV
Trigger: TACCGTGAACCCTTGTCTTCATGATGGCAAATGCAT...TGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TGGCCCACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTGCAGTTCAGGTGAACGATCCCTaGGTATTGTTGCACGTGGCT +
Preference number: 4 (lower is better)
Translates to: WPTTMFTVTTVLNEWPAVQVNDP*VLLHVA
Trigger: AGCCACGTGCAACAATACTCAGGGATCGTTCACCTG...AACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTGGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TCCTCCCACTGCCCAGGATCTCACAATACAATAAGCAAAACACAGAACGTCCTTCGAAAGACCCGCCTCTaGGACCCCAAGAGCTGGCAG +
Preference number: 4 (lower is better)
Translates to: SSHCPGSHNTISKTQNVLRKTRL*DPKSWQ
Trigger: CTGCCAGCTCTTGGGGTCTCAGAGGCGGGTCTTTCG...AAGGACGTTCTGTGTTTTGCTTATTGTATTGTGAGATCCTGGGCAGTGGGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTGACACTTAGGGGTTTCCACAGTTaGGTCCACCGAGGCCAAATG +
Preference number: 4 (lower is better)
Translates to: SLLPTSLVMGAQFRTVTLRGFHS*VHRGQM
Trigger: CATTTGGCCTCGGTGGACTCAACTGTGGAAACCCCT...AAGTGTCACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp GCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACACACCTGCAACTGCCTCTACACGTCTGTCATCTaGAGGAGGTTTTTGGTGCTT +
Preference number: 4 (lower is better)
Translates to: AAFPLEVRHQLRHTCNCLYTSVI*RRFLVL
Trigger: AAGCACCAAAAACCTCCTGCAGATGACAGACGTGTA...GAGGCAGTTGCAGGTGTGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp ACGACACAGTGTGGAAGTGTCCCAGCCCAATCTATTAAAGTGCAAATTAAAGGGGGGAGGAGTGTTCGATaGGCCGGGGAGGGAAGGGAG +
Preference number: 4 (lower is better)
Translates to: TTQCGSVPAQSIKVQIKGGRSVR*AGEGRE
Trigger: CTCCCTTCCCTCCCCGGCCCATCGAACACTCCTCCC...CCCTTTAATTTGCACTTTAATAGATTGGGCTGGGACACTTCCACACTGTGTCGT
53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp AGGCTGGAACTAGGAAGACCCTCCTTTTTAACCCTGTTCCTGATGCCCCCAGGAACATCTGGGCTAAACTaGTGCTTGTGGCTGGAAGGG +
Preference number: 4 (lower is better)
Translates to: RLELGRPSFLTLFLMPPGTSGLN*CLWLEG
Trigger: CCCTTCCAGCCACAAGCACCAGTTTAGCCCAGATGT...TCCTGGGGGCATCAGGAACAGGGTTAAAAAGGAGGGTCTTCCTAGTTCCAGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGCACGGCCCAGCTCTGTaGTCCTTTCTCCTGCTGACG +
Preference number: 4 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRHGPAL*SFLLLT
Trigger: CGTCAGCAGGAGAAAGGACCACAGAGCTGGGCCGTG...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTAGCTGGCCTTCTGCAGGAGGTTTTTaGTGCTTCCGTTCTCGTGCA +
Preference number: 4 (lower is better)
Translates to: QNTERPSPKASPQTLSWPSAGGF*CFRSRA
Trigger: TGCACGAGAACGGAAGCACCAAAAACCTCCTGCAGA...AGGCCAGCTAAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CAA 72 bp CTTTTTCAACTACACCCTGCAGACTCTGGCTCCACATaGATGGTTAGAGCCTCAGGCCCCATGCAATTCCCC +
Preference number: 4 (lower is better)
Translates to: LFQLHPADSGST*MVRASGPMQFP
Trigger: GGGGAATTGCATGGGGCCTGAGGCTCTAACCATCAATGTGGAGCCAGAGTCTGCAGGGTGTAGTTGAAAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CAA 72 bp CTGTTGAGTTGGTGGGCAACATTATGGTTTGGAAGATaGGCAGGCATGCATCCTTGCCGGTGGCTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: LLSWWATLWFGR*AGMHPCRWLPP
Trigger: AGGAGGAAGCCACCGGCAAGGATGCATGCCTGCCAATCTTCCAAACCATAATGTTGCCCACCAACTCAACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CAA 72 bp CTGTGGAGTCCCCATCATCTGGGTGGGGATAATGCTTaGACCTCTTCACCTCATCCAAACCCAGGACATCTC +
Preference number: 4 (lower is better)
Translates to: LWSPHHLGGDNA*TSSPHPNPGHL
Trigger: GAGATGTCCTGGGTTTGGATGAGGTGAAGAGGTCAAAGCATTATCCCCACCCAGATGATGGGGACTCCACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp CAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTAGCTGGCCTCAAAGCTTCTACATGTaGCAGAGTACTGGGACTGGT +
Preference number: 4 (lower is better)
Translates to: QNTERPSPKASPQTLSWPQSFYM*QSTGTG
Trigger: ACCAGTCCCAGTACTCTGTCACATGTAGAAGCTTTG...AGGCCAGCTAAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTGACACTTCTGGGCATCTGCAGGTaGACGATCCCTGAGTATTGT +
Preference number: 4 (lower is better)
Translates to: SLLPTSLVMGAQFRTVTLLGICR*TIPEYC
Trigger: ACAATACTCAGGGATCGTTCACCTGCAGATGCCCAG...AAGTGTCACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp AGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTACTCGTTCATCCAGCCACTTGCGTGTaGACAGTCCCTTCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: SSPTSALEFGECISLLVHPATCV*TVPSSG
Trigger: CCCAGAAGAAGGGACTGTGCACACGCAAGTGGCTGG...ATGAACGAGTAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp GAAGTGTCTGGGAACAGCCACCACACTGGCTCTTCCCATAGCAATGAGGCCTGGGGTCCACAATGCATTTaGCATCATGAAGACAAGGGT +
Preference number: 4 (lower is better)
Translates to: EVSGNSHHTGSSHSNEAWGPQCI*HHEDKG
Trigger: ACCCTTGTCTTCATGATGGCAAATGCATTGTGGACC...CCAGGCCTCATTGCTATGGGAAGAGCCAGTGTGGTGGCTGTTCCCAGACACTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp TGGCCCACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTGCAGTTACAGGTAACAATGAGTaGCACGCCCAGGATGAGCAA +
Preference number: 4 (lower is better)
Translates to: WPTTMFTVTTVLNEWPAVTGNNE*HAQDEQ
Trigger: TTGCTCATCCTGGGCGTGGCACTCATTGTTACCTGT...AACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTGGGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TTTCTAACAGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTGGGAGGAGTGTTCGATaGGCCGGGGAGGGAAGGGAG +
Preference number: 4 (lower is better)
Translates to: FLTAVPFPEIYAVESPSSGRSVR*AGEGRE
Trigger: CTCCCTTCCCTCCCCGGCCCATCGAACACTCCTCCC...AGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCTGTTAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTAGCTGGCCTTGTAAGAAAATGGGATaGACTGGACTCTTCCGCACG +
Preference number: 4 (lower is better)
Translates to: QNTERPSPKASPQTLSWPCKKMG*TGLFRT
Trigger: CGTGCGGAAGAGTCCAGTCCATCCCATTTTCTTACA...AGGCCAGCTAAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp ACCACACTGGCTCTTCCCATAGCAATGAGGCCTGGAACAAGCAGGAATACTGCCTCTGCAGGAGGTTTTTaGTGCTTCCGTTCTCGTGCA +
Preference number: 4 (lower is better)
Translates to: TTLALPIAMRPGTSRNTASAGGF*CFRSRA
Trigger: TGCACGAGAACGGAAGCACCAAAAACCTCCTGCAGA...GGCAGTATTCCTGCTTGTTCCAGGCCTCATTGCTATGGGAAGAGCCAGTGTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTGCAGTTCCGCCGTCGCTGATGAAAGATaGGTTATACTGTCCCGGGAA +
Preference number: 4 (lower is better)
Translates to: HDHVHSNNSAERVACSSAVADER*VILSRE
Trigger: TTCCCGGGACAGTATAACCCATCTTTCATCAGCGAC...GGCGGAACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp AGGCTGGAACTAGGAAGACCCTCCTTTTTAACCCTGTTCCTGATGCCCCCAGGACTCATTCTAGCATTCTaGGCTGTCACTCCCTTTCTG +
Preference number: 4 (lower is better)
Translates to: RLELGRPSFLTLFLMPPGLILAF*AVTPFL
Trigger: CAGAAAGGGAGTGACAGCTCAGAATGCTAGAATGAG...TCCTGGGGGCATCAGGAACAGGGTTAAAAAGGAGGGTCTTCCTAGTTCCAGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR GCA 90 bp CATTATCTCCTAGGCAGTGTGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGGGAGGAAGCCATGTTaGTCCACTCAGCACTTGTCT +
Preference number: 4 (lower is better)
Translates to: HYLLGSVAFPFCLLPLSWGRKPC*STQHLS
Trigger: AGACAAGTGCTGAGTGGAGCAACATGGCTTCCTCCC...CCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCACACTGCCTAGGAGATAATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR GCA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGCCCCCAGCTTCTGGATaGAAAGCTGAGCTTTCTGCC +
Preference number: 4 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRPPASG*KAELSA
Trigger: GGCAGAAAGCTCAGCTTTGCATCCAGAAGCTGGGGG...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR GCA 90 bp TGGCCCACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTGCAGTTGCAGGAGGTTTTTGGTaGTTCCGTTCTCGTGCATTT +
Preference number: 4 (lower is better)
Translates to: WPTTMFTVTTVLNEWPAVAGGFW*FRSRAF
Trigger: AAATGCACGAGAACGGAAGCACCAAAAACCTCCTGC...AACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTGGGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp ACCACACTGGCTCTTCCCATAGCAATGAGGCCTGGAACAAGCAGGAATACTGCCGCAGGAGGTTTTTGGTaGTTCCGTTCTCGTGCATTT +
Preference number: 4 (lower is better)
Translates to: TTLALPIAMRPGTSRNTAAGGFW*FRSRAF
Trigger: AAATGCACGAGAACGGAAGCACCAAAAACCTCCTGC...GGCAGTATTCCTGCTTGTTCCAGGCCTCATTGCTATGGGAAGAGCCAGTGTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp CATTATCTCCTAGGCAGTGTGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGCTGGGTACAGTCCGTTaGGTTCAAGTTCAGGGTTCC +
Preference number: 4 (lower is better)
Translates to: HYLLGSVAFPFCLLPLSWLGTVR*VQVQGS
Trigger: GGAACCCTGAACTTGAACGCAACGGACTGTACCCAG...CCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCACACTGCCTAGGAGATAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp ACGACACAGTGTGGAAGTGTCCCAGCCCAATCTATTAAAGTGCAAATTAAAGGGCTGGGAGAGCACAGTTaGCTCCCCAGGTTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: TTQCGSVPAQSIKVQIKGLGEHS*LPRFQS
Trigger: GCTCTGGAACCTGGGGAGCCAACTGTGCTCTCCCAG...CCCTTTAATTTGCACTTTAATAGATTGGGCTGGGACACTTCCACACTGTGTCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTGACACTTACACCAGTAAGGAGATaGGTGAAGGTGATGGTGAGG +
Preference number: 4 (lower is better)
Translates to: SLLPTSLVMGAQFRTVTLTPVRR*VKVMVR
Trigger: CCTCACCATCACCTTCACCCATCTCCTTACTGGTGT...AAGTGTCACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TTTCTAACAGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTACTGGTGCTTGTGGCTaGAAGGGCTGGCCCCGTGGA +
Preference number: 4 (lower is better)
Translates to: FLTAVPFPEIYAVESPSSTGACG*KGWPRG
Trigger: TCCACGGGGCCAGCCCTTCCAGCCACAAGCACCAGT...AGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCTGTTAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGGAGTCGTCTGGGGCATaGCAGATGTCAAAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRESSGA*QMSKLE
Trigger: CTCCAGCTTTGACATCTGCCATGCCCCAGACGACTC...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTACAAACAGTGTCACATTaGAGGCCAGGGCAAAGGTGG +
Preference number: 4 (lower is better)
Translates to: LPPSSPTSALEFGECISLQTVSH*RPGQRW
Trigger: CCACCTTTGCCCTGGCCTCCAATGTGACACTGTTTG...TAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp AGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTGGGTGGGGTCTCGTGCATTTCAATaGCTTCTCGGCCCCACTCTT +
Preference number: 4 (lower is better)
Translates to: SCPISRNICCGVPIIWVGSRAFQ*LLGPTL
Trigger: AAGAGTGGGGCCGAGAAGCCATTGAAATGCACGAGA...CCCCACCCAGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CAA 72 bp GAATGTATCAGTTTACTCGTTCATTCCTCTGCCCAATaGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAG +
Preference number: 4 (lower is better)
Translates to: ECISLLVHSSAQ*WGLQLAAFPLE
Trigger: CTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAGGAATGAACGAGTAAACTGATACATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTGACACTTTGGGAAGGTTGTTTGTaGGACAGAATATGGGGCAAG +
Preference number: 4 (lower is better)
Translates to: SLLPTSLVMGAQFRTVTLWEGCL*DRIWGK
Trigger: CTTGCCCCATATTCTGTCTCACAAACAACCTTCCCA...AAGTGTCACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TCCTCCCACTGCCCAGGATCTCACAATACAATAAGCAAAACACAGAACGTCCTTGATACCCACGGCCAGTaGGGTCCACAATGCATTTGC +
Preference number: 4 (lower is better)
Translates to: SSHCPGSHNTISKTQNVLDTHGQ*GPQCIC
Trigger: GCAAATGCATTGTGGACCTCACTGGCCGTGGGTATC...AAGGACGTTCTGTGTTTTGCTTATTGTATTGTGAGATCCTGGGCAGTGGGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TGGCCCACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTGCAGTTAGTGATCCATCTTGTTaGACTGGAAGTAGCCAGACT +
Preference number: 4 (lower is better)
Translates to: WPTTMFTVTTVLNEWPAVSDPSC*TGSSQT
Trigger: AGTCTGGCTACTTCCAGTTCAACAAGATGGATCACT...AACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTGGGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp AGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTGGGTGGGGAAGGCTCACTGTTACTaGTTTGGTAGAGTCTGTGGG +
Preference number: 4 (lower is better)
Translates to: SCPISRNICCGVPIIWVGKAHCY*FGRVCG
Trigger: CCCACAGACTCTACCAAAGCAGTAACAGTGAGCCTT...CCCCACCCAGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp CTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTAACAGGTAACAATGAGTaGCACGCCCAGGATGAGCAA +
Preference number: 4 (lower is better)
Translates to: LPPSSPTSALEFGECISLTGNNE*HAQDEQ
Trigger: TTGCTCATCCTGGGCGTGGCACTCATTGTTACCTGT...TAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TGGAGTCCCCATCATCTGGGTGGGGATAATGCTTTGACCTCTTCACCTCATCCAGATGAATTTCTCTTCTaGGAGAGCACAGTTGGCTCC +
Preference number: 4 (lower is better)
Translates to: WSPHHLGGDNALTSSPHPDEFLF*ESTVGS
Trigger: GGAGCCAACTGTGCTCTCCCAGAAGAGAAATTCATC...TGGATGAGGTGAAGAGGTCAAAGCATTATCCCCACCCAGATGATGGGGACTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TCCTCCCACTGCCCAGGATCTCACAATACAATAAGCAAAACACAGAACGTCCTTGAACCGGTGACTCTGTaGAAGACTGAGCAGGCTCGT +
Preference number: 4 (lower is better)
Translates to: SSHCPGSHNTISKTQNVLEPVTL*KTEQAR
Trigger: ACGAGCCTGCTCAGTCTTCCACAGAGTCACCGGTTC...AAGGACGTTCTGTGTTTTGCTTATTGTATTGTGAGATCCTGGGCAGTGGGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TTTCTAACAGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTCTAAACTGGTGCTTGTaGCTGGAAGGGCTGGCCCCG +
Preference number: 4 (lower is better)
Translates to: FLTAVPFPEIYAVESPSSLNWCL*LEGLAP
Trigger: CGGGGCCAGCCCTTCCAGCCACAAGCACCAGTTTAG...AGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCTGTTAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGACATCTGGGCTAAACTaGTGCTTGTGGCTGGAAGGG +
Preference number: 4 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRTSGLN*CLWLEG
Trigger: CCCTTCCAGCCACAAGCACCAGTTTAGCCCAGATGT...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTGACACTTAAAGCTGGAGACATCTaGGCTAAACTGGTGCTTGTG +
Preference number: 4 (lower is better)
Translates to: SLLPTSLVMGAQFRTVTLKAGDI*AKLVLV
Trigger: CACAAGCACCAGTTTAGCCCAGATGTCTCCAGCTTT...AAGTGTCACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp AGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTACTCGTTCATACAGAGTACTGGGACTaGTCACAGGAGAGTGAGTCG +
Preference number: 4 (lower is better)
Translates to: SSPTSALEFGECISLLVHTEYWD*SQESES
Trigger: CGACTCACTCTCCTGTGACCAGTCCCAGTACTCTGT...ATGAACGAGTAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp CATTATCTCCTAGGCAGTGTGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGTTGGGGTTTGCTGTTTaGTTGCTGGGGATCAATGCA +
Preference number: 4 (lower is better)
Translates to: HYLLGSVAFPFCLLPLSWLGFAV*LLGINA
Trigger: TGCATTGATCCCCAGCAATCAAACAGCAAACCCCAA...CCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCACACTGCCTAGGAGATAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TATGAAACACTAAGCCAAGAGCAACTTGGCTGTACAGCTTTACTGCTTTGGGCAGTCAGAGGGATTGGCTaGGTGGTAGGATCCGTATGC +
Preference number: 4 (lower is better)
Translates to: YETLSQEQLGCTALLLWAVRGIG*VVGSVC
Trigger: GCATACGGATCCTACCACTCAGCCAATCCCTCTGAC...TGCCCAAAGCAGTAAAGCTGTACAGCCAAGTTGCTCTTGGCTTAGTGTTTCATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp CAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTAGCTGGCCTATCTGTGGTTTGAGGTaGAGATGGTGTAAGAAAATG +
Preference number: 4 (lower is better)
Translates to: QNTERPSPKASPQTLSWPICGLR*RWCKKM
Trigger: CATTTTCTTACACCATCTTCACCTCAAACCACAGAT...AGGCCAGCTAAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTAGTGATCCATCTTGTTaGACTGGAAGTAGCCAGACT +
Preference number: 4 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCSDPSC*TGSSQT
Trigger: AGTCTGGCTACTTCCAGTTCAACAAGATGGATCACT...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp TCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTGACACTTGGTCCACAATGCATTTaGCATCATGAAGACAAGGGT +
Preference number: 4 (lower is better)
Translates to: SLLPTSLVMGAQFRTVTLGPQCI*HHEDKG
Trigger: ACCCTTGTCTTCATGATGGCAAATGCATTGTGGACC...AAGTGTCACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGGTGCTTCCGTTCTCGTaGATTTCAATGGCTTCTCGG +
Preference number: 4 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRVLPFS*ISMASR
Trigger: CCGAGAAGCCATTGAAATGCACGAGAACGGAAGCAC...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp TCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTGACACTTTACACGTCTGTCATCTaGAGGAGGTTTTTGGTGCTT +
Preference number: 4 (lower is better)
Translates to: SLLPTSLVMGAQFRTVTLYTSVI*RRFLVL
Trigger: AAGCACCAAAAACCTCCTGCAGATGACAGACGTGTA...AAGTGTCACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp GACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTTGGTTCCAGAGCAGGGTaGGAGGCTTGGCGGGACACC +
Preference number: 4 (lower is better)
Translates to: DTLRDTWMLLKKFKGMLFGSRAG*EAWRDT
Trigger: GGTGTCCCGCCAAGCCTCCCACCCTGCTCTGGAACC...AAACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp ACGACACAGTGTGGAAGTGTCCCAGCCCAATCTATTAAAGTGCAAATTAAAGGGGCTGATGAGAATGGCTaGGGTTGTGACGGTGAGGGT +
Preference number: 4 (lower is better)
Translates to: TTQCGSVPAQSIKVQIKGADENG*GCDGEG
Trigger: ACCCTCACCGTCACAACCCCAGCCATTCTCATCAGC...CCCTTTAATTTGCACTTTAATAGATTGGGCTGGGACACTTCCACACTGTGTCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp AGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTACTCGTTCATATTGCCGTCGACATTTaGACTGAAGTCACACGTGGC +
Preference number: 4 (lower is better)
Translates to: SSPTSALEFGECISLLVHIAVDI*TEVTRG
Trigger: GCCACGTGTGACTTCAGTCCAAATGTCGACGGCAAT...ATGAACGAGTAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTAAAAGCTGGAGACATCTaGGCTAAACTGGTGCTTGTG +
Preference number: 4 (lower is better)
Translates to: LPPSSPTSALEFGECISLKAGDI*AKLVLV
Trigger: CACAAGCACCAGTTTAGCCCAGATGTCTCCAGCTTT...TAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TACAATAAGCAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTCATGTGACAGAGTACTaGGACTGGTCACAGGAGAGT +
Preference number: 4 (lower is better)
Translates to: YNKQNTERPSPKASPQTLHVTEY*DWSQES
Trigger: ACTCTCCTGTGACCAGTCCCAGTACTCTGTCACATG...AAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTGCTTATTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TGGCCCACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTGCAGTTCTAGGATTTCAGGATTaGTTGGGAGATGTGGTTTCT +
Preference number: 4 (lower is better)
Translates to: WPTTMFTVTTVLNEWPAVLGFQD*LGDVVS
Trigger: AGAAACCACATCTCCCAACCAATCCTGAAATCCTAG...AACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTGGGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGTCTGCAGGAGGTTTTTaGTGCTTCCGTTCTCGTGCA +
Preference number: 4 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRSAGGF*CFRSRA
Trigger: TGCACGAGAACGGAAGCACCAAAAACCTCCTGCAGA...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp ACGACACAGTGTGGAAGTGTCCCAGCCCAATCTATTAAAGTGCAAATTAAAGGGCAGTCCAGTGTAGGCTaGGTACAGTCCGTTGCGTTC +
Preference number: 4 (lower is better)
Translates to: TTQCGSVPAQSIKVQIKGQSSVG*VQSVAF
Trigger: GAACGCAACGGACTGTACCCAGCCTACACTGGACTG...CCCTTTAATTTGCACTTTAATAGATTGGGCTGGGACACTTCCACACTGTGTCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TCCTCCCACTGCCCAGGATCTCACAATACAATAAGCAAAACACAGAACGTCCTTATGTTTTCTTCTTGGTaGGGATCCATCGTCCGGTGC +
Preference number: 4 (lower is better)
Translates to: SSHCPGSHNTISKTQNVLMFSSW*GSIVRC
Trigger: GCACCGGACGATGGATCCTCACCAAGAAGAAAACAT...AAGGACGTTCTGTGTTTTGCTTATTGTATTGTGAGATCCTGGGCAGTGGGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR TCA 90 bp TACAATAAGCAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTCTGAGAAGGAGAGTCTaGGATCTTAACGGAAGAGGT +
Preference number: 4 (lower is better)
Translates to: YNKQNTERPSPKASPQTLLRRRV*DLNGRG
Trigger: ACCTCTTCCGTTAAGATCTCAGACTCTCCTTCTCAG...AAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTGCTTATTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTTCTGAGCAGCAAAGGTaGTATATCTGGAAGTCAACA +
Preference number: 4 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCSEQQR*YIWKST
Trigger: TGTTGACTTCCAGATATATCACCTTTGCTGCTCAGA...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp CATCAACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAACGAAAGACCCGCCTCTaGGACCCCAAGAGCTGGCAG +
Preference number: 4 (lower is better)
Translates to: HQPRATESSLYYECNMVKRKTRL*DPKSWQ
Trigger: CTGCCAGCTCTTGGGGTCTCAGAGGCGGGTCTTTCG...TTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TTTCTAACAGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTAGGGGTTTCCACAGTTaGGTCCACCGAGGCCAAATG +
Preference number: 4 (lower is better)
Translates to: FLTAVPFPEIYAVESPSSRGFHS*VHRGQM
Trigger: CATTTGGCCTCGGTGGACTCAACTGTGGAAACCCCT...AGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCTGTTAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp AGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTACTCGTTCATCTGGTTCTTGGGGTTTaGTGTTTGATTGCTGGGGAT +
Preference number: 4 (lower is better)
Translates to: SSPTSALEFGECISLLVHLVLGV*CLIAGD
Trigger: ATCCCCAGCAATCAAACAGCAAACCCCAAGAACCAG...ATGAACGAGTAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp TTTCTAACAGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTGGAAGTAGCCAGACTTaGACTGACAGAGCGCGACAC +
Preference number: 4 (lower is better)
Translates to: FLTAVPFPEIYAVESPSSGSSQT*TDRARH
Trigger: GTGTCGCGCTCTGTCAGTGCAAGTCTGGCTACTTCC...AGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCTGTTAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp CTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTATACACGTCTGTCATCTaGAGGAGGTTTTTGGTGCTT +
Preference number: 4 (lower is better)
Translates to: LPPSSPTSALEFGECISLYTSVI*RRFLVL
Trigger: AAGCACCAAAAACCTCCTGCAGATGACAGACGTGTA...TAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TTTCTAACAGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTGCTGATGAGAATGGCTaGGGTTGTGACGGTGAGGGT +
Preference number: 4 (lower is better)
Translates to: FLTAVPFPEIYAVESPSSADENG*GCDGEG
Trigger: ACCCTCACCGTCACAACCCCAGCCATTCTCATCAGC...AGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCTGTTAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp GACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTTCTGGGAGAGCACAGTTaGCTCCCCAGGTTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: DTLRDTWMLLKKFKGMLFLGEHS*LPRFQS
Trigger: GCTCTGGAACCTGGGGAGCCAACTGTGCTCTCCCAG...AAACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp AACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAAATCCCCTCAGTCAGAGGCATaGCCCTTCCATCGCCCGCTT +
Preference number: 4 (lower is better)
Translates to: NQEQQNPLCTMNVTWLKSPQSEA*PFHRPL
Trigger: AAGCGGGCGATGGAAGGGCCATGCCTCTGACTGAGG...GGATTTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR CCA 90 bp TATGAAACACTAAGCCAAGAGCAACTTGGCTGTACAGCTTTACTGCTTTGGGCACATGTGACAGAGTACTaGGACTGGTCACAGGAGAGT +
Preference number: 4 (lower is better)
Translates to: YETLSQEQLGCTALLLWAHVTEY*DWSQES
Trigger: ACTCTCCTGTGACCAGTCCCAGTACTCTGTCACATG...TGCCCAAAGCAGTAAAGCTGTACAGCCAAGTTGCTCTTGGCTTAGTGTTTCATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp ACGACACAGTGTGGAAGTGTCCCAGCCCAATCTATTAAAGTGCAAATTAAAGGGTCTCGTGCATTTCAATaGCTTCTCGGCCCCACTCTT +
Preference number: 4 (lower is better)
Translates to: TTQCGSVPAQSIKVQIKGSRAFQ*LLGPTL
Trigger: AAGAGTGGGGCCGAGAAGCCATTGAAATGCACGAGA...CCCTTTAATTTGCACTTTAATAGATTGGGCTGGGACACTTCCACACTGTGTCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CAA 72 bp CTACCTACAAATGGTAGACCCACTGTGAATGCACCCTaGTTTGGGGGCTCTCCTGGTGTTTTTCACAGTAAT +
Preference number: 4 (lower is better)
Translates to: LPTNGRPTVNAP*FGGSPGVFHSN
Trigger: ATTACTGTGAAAAACACCAGGAGAGCCCCCAAACAAGGGTGCATTCACAGTGGGTCTACCATTTGTAGGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp GACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTTGGCTCCCTTGGCCTGTaGGGGACTAGGGTAGAAGAT +
Preference number: 4 (lower is better)
Translates to: DTLRDTWMLLKKFKGMLFGSLGL*GTRVED
Trigger: ATCTTCTACCCTAGTCCCTCACAGGCCAAGGGAGCC...AAACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp CAAAGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATACTGGTCACAGGAGAGTaGGTCGTCTGGGGCATGGCA +
Preference number: 4 (lower is better)
Translates to: QRNTYRTISNSCPISRNILVTGE*VVWGMA
Trigger: TGCCATGCCCCAGACGACTCACTCTCCTGTGACCAG...TATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp ATTTGGGCCAAACTTGTGAGTCAACAAGCAATTTTGGAACTCACAGGACACTTTCTGGGTACAGTCCGTTaGGTTCAAGTTCAGGGTTCC +
Preference number: 4 (lower is better)
Translates to: IWAKLVSQQAILELTGHFLGTVR*VQVQGS
Trigger: GGAACCCTGAACTTGAACGCAACGGACTGTACCCAG...AAAGTGTCCTGTGAGTTCCAAAATTGCTTGTTGACTCACAAGTTTGGCCCAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp ACGACACAGTGTGGAAGTGTCCCAGCCCAATCTATTAAAGTGCAAATTAAAGGGGATGAATTTCTCTTCTaGGAGAGCACAGTTGGCTCC +
Preference number: 4 (lower is better)
Translates to: TTQCGSVPAQSIKVQIKGDEFLF*ESTVGS
Trigger: GGAGCCAACTGTGCTCTCCCAGAAGAGAAATTCATC...CCCTTTAATTTGCACTTTAATAGATTGGGCTGGGACACTTCCACACTGTGTCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTAGTGACTGATGGGTTTTaGAGAGCGGTGAAATTATTA +
Preference number: 4 (lower is better)
Translates to: LPPSSPTSALEFGECISLVTDGF*RAVKLL
Trigger: TAATAATTTCACCGCTCTCCAAAACCCATCAGTCAC...TAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR CCA 90 bp TCCTCCCACTGCCCAGGATCTCACAATACAATAAGCAAAACACAGAACGTCCTTAAGTTATACCAAGTCTaGAGTGCTCAGGGAAACCCT +
Preference number: 4 (lower is better)
Translates to: SSHCPGSHNTISKTQNVLKLYQV*SAQGNP
Trigger: AGGGTTTCCCTGAGCACTCCAGACTTGGTATAACTT...AAGGACGTTCTGTGTTTTGCTTATTGTATTGTGAGATCCTGGGCAGTGGGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR TCA 90 bp CAAAGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATACCTGGAACTGCTGGGTaGCTCAGGAAGGCTCTCCAA +
Preference number: 4 (lower is better)
Translates to: QRNTYRTISNSCPISRNIPGTAG*LRKALQ
Trigger: TTGGAGAGCCTTCCTGAGTCACCCAGCAGTTCCAGG...TATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp GGACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTCTCTCTGAGAGGTGCTaGGGAATCCAGACTTTCGGA +
Preference number: 4 (lower is better)
Translates to: GHIKGHLDASKEIQRNVVLSERC*GIQTFG
Trigger: TCCGAAAGTCTGGATTCCTCAGCACCTCTCAGAGAG...AACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR TCA 90 bp AGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATATGCGTCAGAGGGATTGGCTaGGTGGTAGGATCCGTATGC +
Preference number: 4 (lower is better)
Translates to: RNTYRTISNSCPISRNICVRGIG*VVGSVC
Trigger: GCATACGGATCCTACCACTCAGCCAATCCCTCTGAC...GCATATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp TTTCTAACAGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTAAGGCTCACTGTTACTaGTTTGGTAGAGTCTGTGGG +
Preference number: 4 (lower is better)
Translates to: FLTAVPFPEIYAVESPSSKAHCY*FGRVCG
Trigger: CCCACAGACTCTACCAAAGCAGTAACAGTGAGCCTT...AGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCTGTTAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp GGACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTCTGGGTACAGTCCGTTaGGTTCAAGTTCAGGGTTCC +
Preference number: 4 (lower is better)
Translates to: GHIKGHLDASKEIQRNVVLGTVR*VQVQGS
Trigger: GGAACCCTGAACTTGAACGCAACGGACTGTACCCAG...AACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp CAAAGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATAGCTCTCGCTGGCCTCTaGGTAGGAGGTGTTATCTGT +
Preference number: 4 (lower is better)
Translates to: QRNTYRTISNSCPISRNIALAGL*VGGVIC
Trigger: ACAGATAACACCTCCTACTCAGAGGCCAGCGAGAGC...TATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCTTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp TTTCTAACAGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTATGCATTTGCCATCATaGAGACAAGGGTTCACGGTA +
Preference number: 4 (lower is better)
Translates to: FLTAVPFPEIYAVESPSSMHLPS*RQGFTV
Trigger: TACCGTGAACCCTTGTCTTCATGATGGCAAATGCAT...AGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCTGTTAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp ATTTGGGCCAAACTTGTGAGTCAACAAGCAATTTTGGAACTCACAGGACACTTTGCAGGAGGTTTTTGGTaGTTCCGTTCTCGTGCATTT +
Preference number: 4 (lower is better)
Translates to: IWAKLVSQQAILELTGHFAGGFW*FRSRAF
Trigger: AAATGCACGAGAACGGAAGCACCAAAAACCTCCTGC...AAAGTGTCCTGTGAGTTCCAAAATTGCTTGTTGACTCACAAGTTTGGCCCAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp TTTCTAACAGCTGTCCCATTTCCAGAAATATATGCTGTGGAGTCCCCATCATCTTTGCTGTTTGATTGCTaGGGATCAATGCAATGGCTG +
Preference number: 4 (lower is better)
Translates to: FLTAVPFPEIYAVESPSSLLFDC*GSMQWL
Trigger: CAGCCATTGCATTGATCCCCAGCAATCAAACAGCAA...AGATGATGGGGACTCCACAGCATATATTTCTGGAAATGGGACAGCTGTTAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp CATCAACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAATCCCTTTCTGGAACCTaGATGGTCCTCTTGACTCTG +
Preference number: 4 (lower is better)
Translates to: HQPRATESSLYYECNMVKSLSGT*MVLLTL
Trigger: CAGAGTCAAGAGGACCATTCAGGTTCCAGAAAGGGA...TTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTTGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR TCA 90 bp CATCAACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAATTCTGGATGCAAAGCTaGGCTTTCTGCCGCATCTGT +
Preference number: 4 (lower is better)
Translates to: HQPRATESSLYYECNMVKFWMQS*AFCRIC
Trigger: ACAGATGCGGCAGAAAGCTCAGCTTTGCATCCAGAA...TTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTTGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR TCA 90 bp GACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTTCATGCTCGGCAAGAGTaGTCCATCTTGTTGAACTGG +
Preference number: 4 (lower is better)
Translates to: DTLRDTWMLLKKFKGMLFHARQE*SILLNW
Trigger: CCAGTTCAACAAGATGGATCACTCTTGCCGAGCATG...AAACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp GGACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTCTGTCACTCCCTTTCTaGAACCTGAATGGTCCTCTT +
Preference number: 4 (lower is better)
Translates to: GHIKGHLDASKEIQRNVVLSLPF*NLNGPL
Trigger: AAGAGGACCATTCAGGTTCCAGAAAGGGAGTGACAG...AACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR CCA 90 bp TCCTCCCACTGCCCAGGATCTCACAATACAATAAGCAAAACACAGAACGTCCTTTTGCCAGTGTATAGATaGAAGTCCATATCCATTTTC +
Preference number: 4 (lower is better)
Translates to: SSHCPGSHNTISKTQNVLLPVYR*KSISIF
Trigger: GAAAATGGATATGGACTTCCATCTATACACTGGCAA...AAGGACGTTCTGTGTTTTGCTTATTGTATTGTGAGATCCTGGGCAGTGGGAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR CCA 90 bp CAAAGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATATGTAGGTTGGCAGGTTaGACGTATGCAGAACCGGTG +
Preference number: 4 (lower is better)
Translates to: QRNTYRTISNSCPISRNICRLAG*TYAEPV
Trigger: CACCGGTTCTGCATACGTCCAACCTGCCAACCTACA...TATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp AACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAAATCCACACCAGTAAGGAGATaGGTGAAGGTGATGGTGAGG +
Preference number: 4 (lower is better)
Translates to: NQEQQNPLCTMNVTWLKSTPVRR*VKVMVR
Trigger: CCTCACCATCACCTTCACCCATCTCCTTACTGGTGT...GGATTTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR CAA 72 bp CCTTGCAAATGTCAAGGTCTCATTTATGGCATTGGCTaGGAAATGAGCACGGACAACCTAGAAACCTTAAAA +
Preference number: 4 (lower is better)
Translates to: PCKCQGLIYGIG*EMSTDNLETLK
Trigger: TTTTAAGGTTTCTAGGTTGTCCGTGCTCATTTCCAAGCCAATGCCATAAATGAGACCTTGACATTTGCAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp CATCAACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAACTGAGAAGGAGAGTCTaGGATCTTAACGGAAGAGGT +
Preference number: 4 (lower is better)
Translates to: HQPRATESSLYYECNMVKLRRRV*DLNGRG
Trigger: ACCTCTTCCGTTAAGATCTCAGACTCTCCTTCTCAG...TTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTTGATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp CATCAACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAATTGGGGTTTGCTGTTTaGTTGCTGGGGATCAATGCA +
Preference number: 4 (lower is better)
Translates to: HQPRATESSLYYECNMVKLGFAV*LLGINA
Trigger: TGCATTGATCCCCAGCAATCAAACAGCAAACCCCAA...TTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTTGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp AGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATATGCCAAAGCTTCTACATGTaGCAGAGTACTGGGACTGGT +
Preference number: 4 (lower is better)
Translates to: RNTYRTISNSCPISRNICQSFYM*QSTGTG
Trigger: ACCAGTCCCAGTACTCTGTCACATGTAGAAGCTTTG...GCATATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp GGACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTCACAACTACAGCACCTaGAGTCAAAGCTTCTACATG +
Preference number: 4 (lower is better)
Translates to: GHIKGHLDASKEIQRNVVHNYST*SQSFYM
Trigger: CATGTAGAAGCTTTGACTTCAGGTGCTGTAGTTGTG...AACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp CAAAGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATAATACCAAGTCTGGAGTaGTCAGGGAAACCCTCTGTC +
Preference number: 4 (lower is better)
Translates to: QRNTYRTISNSCPISRNIIPSLE*SGKPSV
Trigger: GACAGAGGGTTTCCCTGAGCACTCCAGACTTGGTAT...TATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCTTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR GCA 90 bp GACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTTTTTCTGGATCCTGTCTaGCAGGTCAAACAGTGTCAC +
Preference number: 4 (lower is better)
Translates to: DTLRDTWMLLKKFKGMLFFLDPV*QVKQCH
Trigger: GTGACACTGTTTGACCTGGCAGACAGGATCCAGAAA...AAACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTC
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR GCA 90 bp CAAAGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATAGTGCTTCCGTTCTCGTaGATTTCAATGGCTTCTCGG +
Preference number: 4 (lower is better)
Translates to: QRNTYRTISNSCPISRNIVLPFS*ISMASR
Trigger: CCGAGAAGCCATTGAAATGCACGAGAACGGAAGCAC...TATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCTTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp GACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTTATTGGTTGGGAGATGTaGTTTCTTCGGGGTAGTGTG +
Preference number: 4 (lower is better)
Translates to: DTLRDTWMLLKKFKGMLFIGWEM*FLRGSV
Trigger: CACACTACCCCGAAGAAACCACATCTCCCAACCAAT...AAACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CATCAACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAAGTCGCTGATGAAAGATaGGTTATACTGTCCCGGGAA +
Preference number: 4 (lower is better)
Translates to: HQPRATESSLYYECNMVKVADER*VILSRE
Trigger: TTCCCGGGACAGTATAACCCATCTTTCATCAGCGAC...TTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTTGATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CAAAGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATAATTGGTTGGGAGATGTaGTTTCTTCGGGGTAGTGTG +
Preference number: 4 (lower is better)
Translates to: QRNTYRTISNSCPISRNIIGWEM*FLRGSV
Trigger: CACACTACCCCGAAGAAACCACATCTCCCAACCAAT...TATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR CAA 72 bp GACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTaGTTTTGCCCCGATTCATACTTGCTTGGGAAAGTA +
Preference number: 4 (lower is better)
Translates to: DTWMLLKKFKGM*FCPDSYLLGKV
Trigger: TACTTTCCCAAGCAAGTATGAATCGGGGCAAAACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CAA 72 bp TCTATTTGGGCCAAACTTGTGAGTCAACAAGCAATTTaGGAACTCACAGGACACTTTTCTGGATGTTGGAAT +
Preference number: 4 (lower is better)
Translates to: SIWAKLVSQQAI*ELTGHFSGCWN
Trigger: ATTCCAACATCCAGAAAAGTGTCCTGTGAGTTCCAAAATTGCTTGTTGACTCACAAGTTTGGCCCAAATAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp GGACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTTCGTTTTCAAGCTCTTaGGTGTTGGAATGGTTTTCT +
Preference number: 4 (lower is better)
Translates to: GHIKGHLDASKEIQRNVVSFSSS*VLEWFS
Trigger: AGAAAACCATTCCAACACTCAAGAGCTTGAAAACGA...AACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CCA 90 bp CAAAGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATATTGCTGTTTGATTGCTaGGGATCAATGCAATGGCTG +
Preference number: 4 (lower is better)
Translates to: QRNTYRTISNSCPISRNILLFDC*GSMQWL
Trigger: CAGCCATTGCATTGATCCCCAGCAATCAAACAGCAA...TATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCTTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR TCA 90 bp AGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATATGCTCGTTTTCAAGCTCTTaGGTGTTGGAATGGTTTTCT +
Preference number: 4 (lower is better)
Translates to: RNTYRTISNSCPISRNICSFSSS*VLEWFS
Trigger: AGAAAACCATTCCAACACTCAAGAGCTTGAAAACGA...GCATATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
3UTR CAA 72 bp CTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTTaGCCCCGATTCATACTTGCTTGGGAAAGTAAAACT +
Preference number: 4 (lower is better)
Translates to: LDASKEIQRNVV*PRFILAWESKT
Trigger: AGTTTTACTTTCCCAAGCAAGTATGAATCGGGGCAAAACAACATTCCTTTGAATTTCTTTAGAAGCATCCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
3UTR CAA 72 bp ATAAGTAGTTTTAAGTGGTTAAAAGTTTCTGTTGAGTaGGTGGGCAACATTATGGTTTGGAAGATTGGCAGG +
Preference number: 4 (lower is better)
Translates to: ISSFKWLKVSVE*VGNIMVWKIGR
Trigger: CCTGCCAATCTTCCAAACCATAATGTTGCCCACCAACTCAACAGAAACTTTTAACCACTTAAAACTACTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS GCA 90 bp AGAGCAGGGTGGGAGGCTTGGCGGGACACCCAGGTGCCAGCCACTTaGGTGTGCACAGTCCCTTCTTCTGGGAGCTCCCTCGTCCTCTCC +
Preference number: 5 (lower is better)
Translates to: RAGWEAWRDTQVPAT*VCTVPSSGSSLVLS
Trigger: GGAGAGGACGAGGGAGCTCCCAGAAGAAGGGACTGTGCACACGCAAGTGGCTGGCACCTGGGTGTCCCGCCAAGCCTCCCACCCTGCTCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 90 bp GAGAGCACAGTTGGCTCCCCAGGTTCCAGAGCAGGGTGGGAGGCTTaGCGGGACACCCAGGTGCCAGCCACTTGCGTGTGCACAGTCCCT +
Preference number: 5 (lower is better)
Translates to: ESTVGSPGSRAGWEA*RDTQVPATCVCTVP
Trigger: AGGGACTGTGCACACGCAAGTGGCTGGCACCTGGGTGTCCCGCCAAGCCTCCCACCCTGCTCTGGAACCTGGGGAGCCAACTGTGCTCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 90 bp CTCTTCTGGGAGAGCACAGTTGGCTCCCCAGGTTCCAGAGCAGGGTaGGAGGCTTGGCGGGACACCCAGGTGCCAGCCACTTGCGTGTGC +
Preference number: 5 (lower is better)
Translates to: LFWESTVGSPGSRAG*EAWRDTQVPATCVC
Trigger: GCACACGCAAGTGGCTGGCACCTGGGTGTCCCGCCAAGCCTCCCACCCTGCTCTGGAACCTGGGGAGCCAACTGTGCTCTCCCAGAAGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 90 bp CTGCTGGGTGACTCAGGAAGGCTCTCCAAGGACAACAAGCTGCTGTaGGCAGTTGGCGCCGTGGTGATCTCAGGGGAGGGTCCACGGCGC +
Preference number: 5 (lower is better)
Translates to: LLGDSGRLSKDNKLL*AVGAVVISGEGPRR
Trigger: GCGCCGTGGACCCTCCCCTGAGATCACCACGGCGCCAACTGCCCACAGCAGCTTGTTGTCCTTGGAGAGCCTTCCTGAGTCACCCAGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS GCA 90 bp CAGCCTCAGTCAGAGGCATGGCCCTTCCATCGCCCGCTTCTGAGCTaGTGGCAAGCTGACGTCCTCCGAAGGAGGGGGCATCACTTTGCC +
Preference number: 5 (lower is better)
Translates to: QPQSEAWPFHRPLLS*WQADVLRRRGHHFA
Trigger: GGCAAAGTGATGCCCCCTCCTTCGGAGGACGTCAGCTTGCCAGCAGCTCAGAAGCGGGCGATGGAAGGGCCATGCCTCTGACTGAGGCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS CCA 90 bp ATCTCAGGGGAGGGTCCACGGCGCAGACCAGCGATGTCCGCTCTGTaGGAGGAAGCCATGTTGCTCCACTCAGCACTTGTCTCAGGGAGG +
Preference number: 5 (lower is better)
Translates to: ISGEGPRRRPAMSAL*EEAMLLHSALVSGR
Trigger: CCTCCCTGAGACAAGTGCTGAGTGGAGCAACATGGCTTCCTCCCACAGAGCGGACATCGCTGGTCTGCGCCGTGGACCCTCCCCTGAGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS TCA 90 bp AAACACAGCCTCAGTCAGAGGCATGGCCCTTCCATCGCCCGCTTCTaGGCTGCTGGCAAGCTGACGTCCTCCGAAGGAGGGGGCATCACT +
Preference number: 5 (lower is better)
Translates to: KHSLSQRHGPSIARF*AAGKLTSSEGGGIT
Trigger: AGTGATGCCCCCTCCTTCGGAGGACGTCAGCTTGCCAGCAGCTCAGAAGCGGGCGATGGAAGGGCCATGCCTCTGACTGAGGCTGTGTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS TCA 90 bp GCTGTCACTCAGCATTGCACCATCTTCCGGAGACGATGGGTGGTCTaGGGGAGGAGGGTGACTCTGACTCCAGGAGAATGGTGGCCCGGA +
Preference number: 5 (lower is better)
Translates to: AVTQHCTIFRRRWVV*GRRVTLTPGEWWPG
Trigger: TCCGGGCCACCATTCTCCTGGAGTCAGAGTCACCCTCCTCCCTCAGACCACCCATCGTCTCCGGAAGATGGTGCAATGCTGAGTGACAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp CCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACGCCCCTCAAGCGTGGAGGGGGCATCACTTaGCCAGTGTATAGATGGAAG +
Preference number: 5 (lower is better)
Translates to: PAVPPPSFPSTVATPLKRGGGIT*PVYRWK
Trigger: CTTCCATCTATACACTGGCAAAGTGATGCCCCCTCC...ACGCTTGAGGGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR CAA 90 bp TGCGTGTCCAGGCATGGGCTCAGCCTGTCTGTTCTGCTCATGGGTTGCTGGTGTTTCTCGGCCCCACTCTaGCGAGCGAGGATTCTTGGG +
Preference number: 5 (lower is better)
Translates to: CVSRHGLSLSVLLMGCWCFSAPL*RARILG
Trigger: CCCAAGAATCCTCGCTCGCAAGAGTGGGGCCGAGAA...ACACCAGCAACCCATGAGCAGAACAGACAGGCTGAGCCCATGCCTGGACACGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp AACGAGTGGCCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACGCCCATCTGCAGGAGGTTTTaGGTGCTTCCGTTCTCGTGC +
Preference number: 5 (lower is better)
Translates to: NEWPAVPPPSFPSTVATPICRRF*VLPFSC
Trigger: GCACGAGAACGGAAGCACCAAAAACCTCCTGCAGAT...GGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGGCCACTCGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS TCA 90 bp AGAGGCATGGCCCTTCCATCGCCCGCTTCTGAGCTGCTGGCAAGCTaGCGTCCTCCGAAGGAGGGGGCATCACTTTGCCAGTGTATAGAT +
Preference number: 5 (lower is better)
Translates to: RGMALPSPASELLAS*RPPKEGASLCQCID
Trigger: ATCTATACACTGGCAAAGTGATGCCCCCTCCTTCGGAGGACGTCAGCTTGCCAGCAGCTCAGAAGCGGGCGATGGAAGGGCCATGCCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS CCA 90 bp TGGCAGATGTCAAAGCTGGAGACATCTGGGCTAAACTGGTGCTTGTaGCTGGAAGGGCTGGCCCCGTGGAGAACCCTGTTAAGGCTGGGG +
Preference number: 5 (lower is better)
Translates to: WQMSKLETSGLNWCL*LEGLAPWRTLLRLG
Trigger: CCCCAGCCTTAACAGGGTTCTCCACGGGGCCAGCCCTTCCAGCCACAAGCACCAGTTTAGCCCAGATGTCTCCAGCTTTGACATCTGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS-3UTR CAA 90 bp CCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACGCCCCTCAAGCGTGAGGACCTGCAGGAGTaGACATATTTCTGGATCCTG +
Preference number: 5 (lower is better)
Translates to: PAVPPPSFPSTVATPLKREDLQE*TYFWIL
Trigger: CAGGATCCAGAAATATGTCAACTCCTGCAGGTCCTC...ACGCTTGAGGGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp GAAGTGTCTGGGAACAGCCACCACACTGGCTCTTCCCATAGCAATGAGGCCTGGTTCTCGGCCCCACTCTaGCGAGCGAGGATTCTTGGG +
Preference number: 5 (lower is better)
Translates to: EVSGNSHHTGSSHSNEAWFSAPL*RARILG
Trigger: CCCAAGAATCCTCGCTCGCAAGAGTGGGGCCGAGAA...CCAGGCCTCATTGCTATGGGAAGAGCCAGTGTGGTGGCTGTTCCCAGACACTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS TCA 90 bp ACTCTGACTCCAGGAGAATGGTGGCCCGGAGTGTTCCTGGCCGGATaGATTTCTCTTCTGGGAGAGCACAGTTGGCTCCCCAGGTTCCAG +
Preference number: 5 (lower is better)
Translates to: TLTPGEWWPGVFLAG*ISLLGEHSWLPRFQ
Trigger: CTGGAACCTGGGGAGCCAACTGTGCTCTCCCAGAAGAGAAATTCATCCGGCCAGGAACACTCCGGGCCACCATTCTCCTGGAGTCAGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 90 bp GGTAACAATGAGTGCCACGCCCAGGATGAGCAAGAGGCCACCTCCTaGGGCTGCGATCACCACAGTGATGAGCTGATAGGGGTTTCCACA +
Preference number: 5 (lower is better)
Translates to: GNNECHAQDEQEATS*GCDHHSDELIGVST
Trigger: TGTGGAAACCCCTATCAGCTCATCACTGTGGTGATCGCAGCCGCAGGAGGTGGCCTCTTGCTCATCCTGGGCGTGGCACTCATTGTTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS-3UTR CAA 90 bp TGGCCCACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTGCAGTTTCACACGTGGCTCCCTaGGCCTGTGAGGGACTAGGG +
Preference number: 5 (lower is better)
Translates to: WPTTMFTVTTVLNEWPAVSHVAP*ACEGLG
Trigger: CCCTAGTCCCTCACAGGCCAAGGGAGCCACGTGTGA...AACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTGGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp CTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTAGGCGCGCAGGGCGGGTaGCTGCACTCGAGAGGTCAA +
Preference number: 5 (lower is better)
Translates to: LPPSSPTSALEFGECISLGAQGG*LHSRGQ
Trigger: TTGACCTCTCGAGTGCAGCAACCCGCCCTGCGCGCC...TAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS TCA 90 bp ATAGCCGTGGTCTGTGTGGTCACTGGAAGTCCTCTGCCCAGCGTCTaGGCCATGTTCTCGAGTGTAGCTAAGTCCGGTGACTCCGAGAGT +
Preference number: 5 (lower is better)
Translates to: IAVVCVVTGSPLPSV*AMFSSVAKSGDSES
Trigger: ACTCTCGGAGTCACCGGACTTAGCTACACTCGAGAACATGGCTCAGACGCTGGGCAGAGGACTTCCAGTGACCACACAGACCACGGCTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 90 bp GACACCATCCAGGTCGGTGCAGATGGAGGTCTCTTTGTCACATTCTaGACTCTTCCGCTTACACAAGCTGCCCGCTCGAAAGACCCGCCT +
Preference number: 5 (lower is better)
Translates to: DTIQVGADGGLFVTF*TLPLTQAARSKDPP
Trigger: AGGCGGGTCTTTCGAGCGGGCAGCTTGTGTAAGCGGAAGAGTCCAGAATGTGACAAAGAGACCTCCATCTGCACCGACCTGGATGGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS-3UTR CAA 90 bp CCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACGCCCCTCAAGCGTTGTCCCACTCTCTGTTaGAGAAGGTGTGATTCTTCT +
Preference number: 5 (lower is better)
Translates to: PAVPPPSFPSTVATPLKRCPTLC*RRCDSS
Trigger: AGAAGAATCACACCTTCTCAAACAGAGAGTGGGACA...ACGCTTGAGGGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTGGGCTAAACTGGTGCTaGTGGCTGGAAGGGCTGGCC +
Preference number: 5 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCGLNWC*WLEGLA
Trigger: GGCCAGCCCTTCCAGCCACAAGCACCAGTTTAGCCC...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp ACCCCAAGTAGGAGAGCACCCACACCCCCTTCATCCCAATGGTGGGCAGAGGCCGGATTTCAGGATTGGTaGGGAGATGTGGTTTCTTCG +
Preference number: 5 (lower is better)
Translates to: TPSRRAPTPPSSQWWAEAGFQDW*GDVVSS
Trigger: CGAAGAAACCACATCTCCCAACCAATCCTGAAATCC...GGCCTCTGCCCACCATTGGGATGAAGGGGGTGTGGGTGCTCTCCTACTTGGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp CTCTGCCCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACAATCTGCAGGAGGTTTTaGGTGCTTCCGTTCTCGTGC +
Preference number: 5 (lower is better)
Translates to: LCPIVGPTAGCFPSGGETICRRF*VLPFSC
Trigger: GCACGAGAACGGAAGCACCAAAAACCTCCTGCAGAT...TGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGGGCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS TCA 90 bp ATAGCCGTGGTCTGTGTGGTCACTGGAAGTCCTCTGCCCAGCGTCTaGGCCATGTTCTCGAGTGTAGCTAAGTCCGGTGAGAGAATGCTC +
Preference number: 5 (lower is better)
Translates to: IAVVCVVTGSPLPSV*AMFSSVAKSGERML
Trigger: GAGCATTCTCTCACCGGACTTAGCTACACTCGAGAACATGGCTCAGACGCTGGGCAGAGGACTTCCAGTGACCACACAGACCACGGCTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS TCA 90 bp GTTGGCAGGTTGGACGTATGCAGAACCGGTGACTCTGTGGAAGACTaGGCAGGCTCGTCATCGTCGGAGGACATGCTACTCTGTTTAGGC +
Preference number: 5 (lower is better)
Translates to: VGRLDVCRTGDSVED*AGSSSSEDMLLCLG
Trigger: GCCTAAACAGAGTAGCATGTCCTCCGACGATGACGAGCCTGCTCAGTCTTCCACAGAGTCACCGGTTCTGCATACGTCCAACCTGCCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 90 bp AACAGTGGACGTGTAGGTTGGCAGGTTGGACGTATGCAGAACCGGTaGCTCTGTGGAAGACTGAGCAGGCTCGTCATCGTCGGAGGACAT +
Preference number: 5 (lower is better)
Translates to: NSGRVGWQVGRMQNR*LCGRLSRLVIVGGH
Trigger: ATGTCCTCCGACGATGACGAGCCTGCTCAGTCTTCCACAGAGTCACCGGTTCTGCATACGTCCAACCTGCCAACCTACACGTCCACTGTT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 90 bp ACGTGTAGGTTGGCAGGTTGGACGTATGCAGAACCGGTGACTCTGTaGAAGACTGAGCAGGCTCGTCATCGTCGGAGGACATGCTACTCT +
Preference number: 5 (lower is better)
Translates to: TCRLAGWTYAEPVTL*KTEQARHRRRTCYS
Trigger: AGAGTAGCATGTCCTCCGACGATGACGAGCCTGCTCAGTCTTCCACAGAGTCACCGGTTCTGCATACGTCCAACCTGCCAACCTACACGT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS-3UTR CAA 90 bp TGCGTGTCCAGGCATGGGCTCAGCCTGTCTGTTCTGCTCATGGGTTGCTGGTGTAGCGTCCGTTCTCCTTaGGTGAAAGTAGACGGAACA +
Preference number: 5 (lower is better)
Translates to: CVSRHGLSLSVLLMGCWCSVRSP*VKVDGT
Trigger: TGTTCCGTCTACTTTCACCAAAGGAGAACGGACGCT...ACACCAGCAACCCATGAGCAGAACAGACAGGCTGAGCCCATGCCTGGACACGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp GTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTCAGACAAATATGGGGCAAGAGTaGACACCAGTAAGGAGATGG +
Preference number: 5 (lower is better)
Translates to: VGPTAGCFPSGGETPAQTNMGQE*TPVRRW
Trigger: CCATCTCCTTACTGGTGTCAACTCTTGCCCCATATT...TGTCTGAGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp AACGAGTGGCCTGCAGTTCCGCCTCCGTCTTTCCCTTCCACTGTGGCCACGCCCCTCGTTTTCAAGCTCTaGAGTGTTGGAATGGTTTTC +
Preference number: 5 (lower is better)
Translates to: NEWPAVPPPSFPSTVATPLVFKL*SVGMVF
Trigger: GAAAACCATTCCAACACTCAAGAGCTTGAAAACGAG...GGGCGTGGCCACAGTGGAAGGGAAAGACGGAGGCGGAACTGCAGGCCACTCGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp GAAGTGTCTGGGAACAGCCACCACACTGGCTCTTCCCATAGCAATGAGGCCTGGTCAAACAGTGTCACATaGGAGGCCAGGGCAAAGGTG +
Preference number: 5 (lower is better)
Translates to: EVSGNSHHTGSSHSNEAWSNSVT*EARAKV
Trigger: CACCTTTGCCCTGGCCTCCAATGTGACACTGTTTGA...CCAGGCCTCATTGCTATGGGAAGAGCCAGTGTGGTGGCTGTTCCCAGACACTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS GCA 90 bp AGTAGCCAGACTTGCACTGACAGAGCGCGACACCATCCAGGTCGGTaGAGATGGAGGTCTCTTTGTCACATTCTGGACTCTTCCGCTTAC +
Preference number: 5 (lower is better)
Translates to: SSQTCTDRARHHPGR*RWRSLCHILDSSAY
Trigger: GTAAGCGGAAGAGTCCAGAATGTGACAAAGAGACCTCCATCTGCACCGACCTGGATGGTGTCGCGCTCTGTCAGTGCAAGTCTGGCTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 90 bp AGTGTCTCGATCCGGGCAGTCCAGTGTAGGCTGGGTACAGTCCGTTaGGTTCAAGTTCAGGGTTCCTTACGTTTGTGGGCGAGTAGTACA +
Preference number: 5 (lower is better)
Translates to: SVSIRAVQCRLGTVR*VQVQGSLRLWASST
Trigger: TGTACTACTCGCCCACAAACGTAAGGAACCCTGAACTTGAACGCAACGGACTGTACCCAGCCTACACTGGACTGCCCGGATCGAGACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 90 bp CGGGAAGATGCAAGAGTGTCTCGATCCGGGCAGTCCAGTGTAGGCTaGGTACAGTCCGTTGCGTTCAAGTTCAGGGTTCCTTACGTTTGT +
Preference number: 5 (lower is better)
Translates to: REDARVSRSGQSSVG*VQSVAFKFRVPYVC
Trigger: ACAAACGTAAGGAACCCTGAACTTGAACGCAACGGACTGTACCCAGCCTACACTGGACTGCCCGGATCGAGACACTCTTGCATCTTCCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS-3UTR CAA 90 bp AGTGCTCTGAGCCAGATGTCCGGGGAAGTGGCTCAGAGAAACGGGGGCCTCCCTATGGATGTGGGAAGGTaGTTTGTGAGACAGAATATG +
Preference number: 5 (lower is better)
Translates to: SALSQMSGEVAQRNGGLPMDVGR*FVRQNM
Trigger: CATATTCTGTCTCACAAACAACCTTCCCACATCCAT...AGGGAGGCCCCCGTTTCTCTGAGCCACTTCCCCGGACATCTGGCTCAGAGCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp CCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTGGATTTCAGGATTGGTaGGGAGATGTGGTTTCTTCG +
Preference number: 5 (lower is better)
Translates to: PIVGPTAGCFPSGGETPAGFQDW*GDVVSS
Trigger: CGAAGAAACCACATCTCCCAACCAATCCTGAAATCC...AGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp TGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTGAGGTGGCAAGGCTGTaGGTGACTGTGAGGTGCTCT +
Preference number: 5 (lower is better)
Translates to: WLFPSAYFPCHGSPIQDCEVARL*VTVRCS
Trigger: AGAGCACCTCACAGTCACCAACAGCCTTGCCACCTC...ACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp TGGCCCACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTGCAGTTGCTGGGTACAGTCCGTaGCGTTCAAGTTCAGGGTTC +
Preference number: 5 (lower is better)
Translates to: WPTTMFTVTTVLNEWPAVAGYSP*RSSSGF
Trigger: GAACCCTGAACTTGAACGCAACGGACTGTACCCAGC...AACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTGGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS TCA 90 bp TGCATATTCCTTTCTCCAACTGATACCCGACTGGGCATCTGCAGGTaGACGATCCCTGAGTATTGTTGCACGTGGCTAGGGGAGGACAGG +
Preference number: 5 (lower is better)
Translates to: CIFLSPTDTRLGICR*TIPEYCCTWLGEDR
Trigger: CCTGTCCTCCCCTAGCCACGTGCAACAATACTCAGGGATCGTTCACCTGCAGATGCCCAGTCGGGTATCAGTTGGAGAAAGGAATATGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 90 bp TACACGTCTGTCATCTGCAGGAGGTTTTTGGTGCTTCCGTTCTCGTaGATTTCAATGGCTTCTCGGCCCCACTCTTGCGAGCGAGGATTC +
Preference number: 5 (lower is better)
Translates to: YTSVICRRFLVLPFS*ISMASRPHSCERGF
Trigger: GAATCCTCGCTCGCAAGAGTGGGGCCGAGAAGCCATTGAAATGCACGAGAACGGAAGCACCAAAAACCTCCTGCAGATGACAGACGTGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 90 bp AGCTGGCAGACTTCAGCAGAGGACCTGCAGGAGTTGACATATTTCTaGATCCTGTCTGCCAGGTCAAACAGTGTCACATTGGAGGCCAGG +
Preference number: 5 (lower is better)
Translates to: SWQTSAEDLQELTYF*ILSARSNSVTLEAR
Trigger: CCTGGCCTCCAATGTGACACTGTTTGACCTGGCAGACAGGATCCAGAAATATGTCAACTCCTGCAGGTCCTCTGCTGAAGTCTGCCAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 90 bp CGTTTGTGGGCGAGTAGTACACGTCTGTCATCTGCAGGAGGTTTTTaGTGCTTCCGTTCTCGTGCATTTCAATGGCTTCTCGGCCCCACT +
Preference number: 5 (lower is better)
Translates to: RLWASSTRLSSAGGF*CFRSRAFQWLLGPT
Trigger: AGTGGGGCCGAGAAGCCATTGAAATGCACGAGAACGGAAGCACCAAAAACCTCCTGCAGATGACAGACGTGTACTACTCGCCCACAAACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS-3UTR CAA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGTGCTCCACTCAGCACTaGTCTCAGGGAGGAGAGGGG +
Preference number: 5 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRCSTQH*SQGGEG
Trigger: CCCCTCTCCTCCCTGAGACAAGTGCTGAGTGGAGCA...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR CAA 90 bp CATTATCTCCTAGGCAGTGTGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGTGCGAGCGAGGATTCTaGGGGACATCGGTGTATGGG +
Preference number: 5 (lower is better)
Translates to: HYLLGSVAFPFCLLPLSWCERGF*GTSVYG
Trigger: CCCATACACCGATGTCCCCAAGAATCCTCGCTCGCA...CCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCACACTGCCTAGGAGATAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp TACAATAAGCAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTTTCTCGGCCCCACTCTaGCGAGCGAGGATTCTTGGG +
Preference number: 5 (lower is better)
Translates to: YNKQNTERPSPKASPQTLFSAPL*RARILG
Trigger: CCCAAGAATCCTCGCTCGCAAGAGTGGGGCCGAGAA...AAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTGCTTATTGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp ACCACACTGGCTCTTCCCATAGCAATGAGGCCTGGAACAAGCAGGAATACTGCCATCTGCAGGAGGTTTTaGGTGCTTCCGTTCTCGTGC +
Preference number: 5 (lower is better)
Translates to: TTLALPIAMRPGTSRNTAICRRF*VLPFSC
Trigger: GCACGAGAACGGAAGCACCAAAAACCTCCTGCAGAT...GGCAGTATTCCTGCTTGTTCCAGGCCTCATTGCTATGGGAAGAGCCAGTGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS TCA 90 bp TCTCCAGGAAGCCTAGGGATGTCCCACTCTCTGTTTGAGAAGGTGTaGTTCTTCTTTGTGACCTGGAACTGCTGGGTGACTCAGGAAGGC +
Preference number: 5 (lower is better)
Translates to: SPGSLGMSHSLFEKV*FFFVTWNCWVTQEG
Trigger: GCCTTCCTGAGTCACCCAGCAGTTCCAGGTCACAAAGAAGAATCACACCTTCTCAAACAGAGAGTGGGACATCCCTAGGCTTCCTGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 90 bp CAATGCATTTGCCATCATGAAGACAAGGGTTCACGGTACAGCTGTTaGCTGGGGTTAGAGGTGGCAAGGCTGTTGGTGACTGTGAGGTGC +
Preference number: 5 (lower is better)
Translates to: QCICHHEDKGSRYSC*LGLEVARLLVTVRC
Trigger: GCACCTCACAGTCACCAACAGCCTTGCCACCTCTAACCCCAGTCAACAGCTGTACCGTGAACCCTTGTCTTCATGATGGCAAATGCATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 90 bp TTCAGCAGAGGACCTGCAGGAGTTGACATATTTCTGGATCCTGTCTaGCAGGTCAAACAGTGTCACATTGGAGGCCAGGGCAAAGGTGGT +
Preference number: 5 (lower is better)
Translates to: FSRGPAGVDIFLDPV*QVKQCHIGGQGKGG
Trigger: ACCACCTTTGCCCTGGCCTCCAATGTGACACTGTTTGACCTGGCAGACAGGATCCAGAAATATGTCAACTCCTGCAGGTCCTCTGCTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 90 bp TTGTGGGCGAGTAGTACACGTCTGTCATCTGCAGGAGGTTTTTGGTaGTTCCGTTCTCGTGCATTTCAATGGCTTCTCGGCCCCACTCTT +
Preference number: 5 (lower is better)
Translates to: LWASSTRLSSAGGFW*FRSRAFQWLLGPTL
Trigger: AAGAGTGGGGCCGAGAAGCCATTGAAATGCACGAGAACGGAAGCACCAAAAACCTCCTGCAGATGACAGACGTGTACTACTCGCCCACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 90 bp TCACAGAGGGTGAAGAGCGGACTGACATTGAAGTTATACCAAGTCTaGAGTGCTCAGGGAAACCCTCTGTCTCATCTGCAGGGTCCACAC +
Preference number: 5 (lower is better)
Translates to: SQRVKSGLTLKLYQV*SAQGNPLSHLQGPH
Trigger: GTGTGGACCCTGCAGATGAGACAGAGGGTTTCCCTGAGCACTCCAGACTTGGTATAACTTCAATGTCAGTCCGCTCTTCACCCTCTGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS-3UTR CAA 90 bp TGGCCCACGACCATGTTCACAGTAACAACAGTGCTGAACGAGTGGCCTGCAGTTAGCGTCCGTTCTCCTTaGGTGAAAGTAGACGGAACA +
Preference number: 5 (lower is better)
Translates to: WPTTMFTVTTVLNEWPAVSVRSP*VKVDGT
Trigger: TGTTCCGTCTACTTTCACCAAAGGAGAACGGACGCT...AACTGCAGGCCACTCGTTCAGCACTGTTGTTACTGTGAACATGGTCGTGGGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp CCAATTGTGGGGCCTACAGCTGGCTGCTTTCCCTCTGGAGGTGAGACACCAGCTATGGATGTGGGAAGGTaGTTTGTGAGACAGAATATG +
Preference number: 5 (lower is better)
Translates to: PIVGPTAGCFPSGGETPAMDVGR*FVRQNM
Trigger: CATATTCTGTCTCACAAACAACCTTCCCACATCCAT...AGCTGGTGTCTCACCTCCAGAGGGAAAGCAGCCAGCTGTAGGCCCCACAATTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS CCA 90 bp CTGACGTCCTCCGAAGGAGGGGGCATCACTTTGCCAGTGTATAGATaGAAGTCCATATCCATTTTCTGTAGACAGCTCAGTGCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: LTSSEGGGITLPVYR*KSISIFCRQLSAFS
Trigger: GGAGAAGGCACTGAGCTGTCTACAGAAAATGGATATGGACTTCCATCTATACACTGGCAAAGTGATGCCCCCTCCTTCGGAGGACGTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS-3UTR CAA 90 bp TACAATAAGCAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTTTCACGGTACAGCTGTaGACTGGGGTTAGAGGTGGC +
Preference number: 5 (lower is better)
Translates to: YNKQNTERPSPKASPQTLFTVQL*TGVRGG
Trigger: GCCACCTCTAACCCCAGTCAACAGCTGTACCGTGAA...AAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTGCTTATTGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGGCTGGGTACAGTCCGTaGCGTTCAAGTTCAGGGTTC +
Preference number: 5 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRAGYSP*RSSSGF
Trigger: GAACCCTGAACTTGAACGCAACGGACTGTACCCAGC...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS TCA 90 bp GAAATTATTACCATTCTTAATACTTCCAGAAGACGATGGGTGGTCTaGGGGAGGAGGGTGACTCTGACTCCAGGAGAATGGTGGCCCGGA +
Preference number: 5 (lower is better)
Translates to: EIITILNTSRRRWVV*GRRVTLTPGEWWPG
Trigger: TCCGGGCCACCATTCTCCTGGAGTCAGAGTCACCCTCCTCCCTCAGACCACCCATCGTCTTCTGGAAGTATTAAGAATGGTAATAATTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS TCA 90 bp GTCAAACAGTGTCACATTGGAGGCCAGGGCAAAGGTGGTTTTCAGTaGGATGAAAACTGTACTGGGCTCCCTAGACACATGGGCTGTAGT +
Preference number: 5 (lower is better)
Translates to: VKQCHIGGQGKGGFQ*DENCTGLPRHMGCS
Trigger: ACTACAGCCCATGTGTCTAGGGAGCCCAGTACAGTTTTCATCTCACTGAAAACCACCTTTGCCCTGGCCTCCAATGTGACACTGTTTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 90 bp GCCTATATCCATCTTCACATGCTCGGCAAGAGTGATCCATCTTGTTaGACTGGAAGTAGCCAGACTTGCACTGACAGAGCGCGACACCAT +
Preference number: 5 (lower is better)
Translates to: AYIHLHMLGKSDPSC*TGSSQTCTDRARHH
Trigger: ATGGTGTCGCGCTCTGTCAGTGCAAGTCTGGCTACTTCCAGTTCAACAAGATGGATCACTCTTGCCGAGCATGTGAAGATGGATATAGGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 90 bp GGTTCTAACCAGATTGCATATTCCTTTCTCCAACTGATACCCGACTaGGCATCTGCAGGTGAACGATCCCTGAGTATTGTTGCACGTGGC +
Preference number: 5 (lower is better)
Translates to: GSNQIAYSFLQLIPD*ASAGERSLSIVARG
Trigger: GCCACGTGCAACAATACTCAGGGATCGTTCACCTGCAGATGCCCAGTCGGGTATCAGTTGGAGAAAGGAATATGCAATCTGGTTAGAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS-3UTR CAA 90 bp TGGAGTCCCCATCATCTGGGTGGGGATAATGCTTTGACCTCTTCACCTCATCCAGTAGATGTTTTCTTCTaGGTGAGGATCCATCGTCCG +
Preference number: 5 (lower is better)
Translates to: WSPHHLGGDNALTSSPHPVDVFF*VRIHRP
Trigger: CGGACGATGGATCCTCACCAAGAAGAAAACATCTAC...TGGATGAGGTGAAGAGGTCAAAGCATTATCCCCACCCAGATGATGGGGACTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR CAA 90 bp TGGAGTCCCCATCATCTGGGTGGGGATAATGCTTTGACCTCTTCACCTCATCCAGATGGGTTTCTCTTGTaGTGGGGTACTCTGGTTCTT +
Preference number: 5 (lower is better)
Translates to: WSPHHLGGDNALTSSPHPDGFLL*WGTLVL
Trigger: AAGAACCAGAGTACCCCACAACAAGAGAAACCCATC...TGGATGAGGTGAAGAGGTCAAAGCATTATCCCCACCCAGATGATGGGGACTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp TATGAAACACTAAGCCAAGAGCAACTTGGCTGTACAGCTTTACTGCTTTGGGCAGAGGTGGCAAGGCTGTaGGTGACTGTGAGGTGCTCT +
Preference number: 5 (lower is better)
Translates to: YETLSQEQLGCTALLLWAEVARL*VTVRCS
Trigger: AGAGCACCTCACAGTCACCAACAGCCTTGCCACCTC...TGCCCAAAGCAGTAAAGCTGTACAGCCAAGTTGCTCTTGGCTTAGTGTTTCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp CTTCCTCCTAGCTCCCCAACTTCTGCACTGGAGTTCGGGGAATGTATCAGTTTAGAGGACCTGCAGGAGTaGACATATTTCTGGATCCTG +
Preference number: 5 (lower is better)
Translates to: LPPSSPTSALEFGECISLEDLQE*TYFWIL
Trigger: CAGGATCCAGAAATATGTCAACTCCTGCAGGTCCTC...TAAACTGATACATTCCCCGAACTCCAGTGCAGAAGTTGGGGAGCTAGGAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp TGGAGTCCCCATCATCTGGGTGGGGATAATGCTTTGACCTCTTCACCTCATCCACAGATGGAGGTCTCTTaGTCACATTCTGGACTCTTC +
Preference number: 5 (lower is better)
Translates to: WSPHHLGGDNALTSSPHPQMEVS*SHSGLF
Trigger: GAAGAGTCCAGAATGTGACAAAGAGACCTCCATCTG...TGGATGAGGTGAAGAGGTCAAAGCATTATCCCCACCCAGATGATGGGGACTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp TATGAAACACTAAGCCAAGAGCAACTTGGCTGTACAGCTTTACTGCTTTGGGCATGCGAGCGAGGATTCTaGGGGACATCGGTGTATGGG +
Preference number: 5 (lower is better)
Translates to: YETLSQEQLGCTALLLWACERGF*GTSVYG
Trigger: CCCATACACCGATGTCCCCAAGAATCCTCGCTCGCA...TGCCCAAAGCAGTAAAGCTGTACAGCCAAGTTGCTCTTGGCTTAGTGTTTCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS CCA 90 bp TCTGGTTCTTGGGGTTTGCTGTTTGATTGCTGGGGATCAATGCAATaGCTGATATTGCCGTCGACATTTGGACTGAAGTCACACGTGGCT +
Preference number: 5 (lower is better)
Translates to: SGSWGLLFDCWGSMQ*LILPSTFGLKSHVA
Trigger: AGCCACGTGTGACTTCAGTCCAAATGTCGACGGCAATATCAGCCATTGCATTGATCCCCAGCAATCAAACAGCAAACCCCAAGAACCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS-3UTR CAA 90 bp TCCCTTCTGCCTACTTCCCTTGTCATGGGAGCCCAATTCAGGACTGTGACACTTTGTCCCACTCTCTGTTaGAGAAGGTGTGATTCTTCT +
Preference number: 5 (lower is better)
Translates to: SLLPTSLVMGAQFRTVTLCPTLC*RRCDSS
Trigger: AGAAGAATCACACCTTCTCAAACAGAGAGTGGGACA...AAGTGTCACAGTCCTGAATTGGGCTCCCATGACAAGGGAAGTAGGCAGAAGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp CATTATCTCCTAGGCAGTGTGGCTTTTCCCTTCTGCCTACTTCCCTTGTCATGGAATATGGGGCAAGAGTaGACACCAGTAAGGAGATGG +
Preference number: 5 (lower is better)
Translates to: HYLLGSVAFPFCLLPLSWNMGQE*TPVRRW
Trigger: CCATCTCCTTACTGGTGTCAACTCTTGCCCCATATT...CCATGACAAGGGAAGTAGGCAGAAGGGAAAAGCCACACTGCCTAGGAGATAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp GGACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTTCTGGGAGAGCACAGTaGGCTCCCCAGGTTCCAGAG +
Preference number: 5 (lower is better)
Translates to: GHIKGHLDASKEIQRNVVSGRAQ*APQVPE
Trigger: CTCTGGAACCTGGGGAGCCAACTGTGCTCTCCCAGA...AACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp AACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAAATCCTCACACGTGGCTCCCTaGGCCTGTGAGGGACTAGGG +
Preference number: 5 (lower is better)
Translates to: NQEQQNPLCTMNVTWLKSSHVAP*ACEGLG
Trigger: CCCTAGTCCCTCACAGGCCAAGGGAGCCACGTGTGA...GGATTTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp GGCAGTTTGCCACAGAAACTACATTCCCATGCTTCTCCTCTGAGTGCTCAGCACCTCGTTTTCAAGCTCTaGAGTGTTGGAATGGTTTTC +
Preference number: 5 (lower is better)
Translates to: GSLPQKLHSHASPLSAQHLVFKL*SVGMVF
Trigger: GAAAACCATTCCAACACTCAAGAGCTTGAAAACGAG...GTGCTGAGCACTCAGAGGAGAAGCATGGGAATGTAGTTTCTGTGGCAAACTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp CAAAGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATAGGGCTAAACTGGTGCTaGTGGCTGGAAGGGCTGGCC +
Preference number: 5 (lower is better)
Translates to: QRNTYRTISNSCPISRNIGLNWC*WLEGLA
Trigger: GGCCAGCCCTTCCAGCCACAAGCACCAGTTTAGCCC...TATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp TGGATGTTGGAATTCTTCCCAGGAACAGAGTACTTCATTCTGTGGGGCTTGAGGACTAGGATTTCAGGATaGGTTGGGAGATGTGGTTTC +
Preference number: 5 (lower is better)
Translates to: WMLEFFPGTEYFILWGLRTRISG*VGRCGF
Trigger: GAAACCACATCTCCCAACCAATCCTGAAATCCTAGT...CCTCAAGCCCCACAGAATGAAGTACTCTGTTCCTGGGAAGAATTCCAACATCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp TGGAGTCCCCATCATCTGGGTGGGGATAATGCTTTGACCTCTTCACCTCATCCAAAGGTTCTAACCAGATaGCATATTCCTTTCTCCAAC +
Preference number: 5 (lower is better)
Translates to: WSPHHLGGDNALTSSPHPKVLTR*HIPFSN
Trigger: GTTGGAGAAAGGAATATGCAATCTGGTTAGAACCTT...TGGATGAGGTGAAGAGGTCAAAGCATTATCCCCACCCAGATGATGGGGACTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp GGACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTTGCGAGCGAGGATTCTaGGGGACATCGGTGTATGGG +
Preference number: 5 (lower is better)
Translates to: GHIKGHLDASKEIQRNVVCERGF*GTSVYG
Trigger: CCCATACACCGATGTCCCCAAGAATCCTCGCTCGCA...AACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS TCA 90 bp TCTGGAAGTCAACATTTCAGCTGTAGAAACATCTGTGGTTTGAGGTaGAGATGGTGTAAGAAAATGGGATGGACTGGACTCTTCCGCACG +
Preference number: 5 (lower is better)
Translates to: SGSQHFSCRNICGLR*RWCKKMGWTGLFRT
Trigger: CGTGCGGAAGAGTCCAGTCCATCCCATTTTCTTACACCATCTTCACCTCAAACCACAGATGTTTCTACAGCTGAAATGTTGACTTCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 90 bp GGGACGCCATTAGTGTATGTGTCAGTGATAAGCATGCTCTTTGTCTaGGTGACTGATGGGTTTTGGAGAGCGGTGAAATTATTACCATTC +
Preference number: 5 (lower is better)
Translates to: GTPLVYVSVISMLFV*VTDGFWRAVKLLPF
Trigger: GAATGGTAATAATTTCACCGCTCTCCAAAACCCATCAGTCACCCAGACAAAGAGCATGCTTATCACTGACACATACACTAATGGCGTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS-3UTR CAA 90 bp ACGACACAGTGTGGAAGTGTCCCAGCCCAATCTATTAAAGTGCAAATTAAAGGGCAGATGGAGGTCTCTTaGTCACATTCTGGACTCTTC +
Preference number: 5 (lower is better)
Translates to: TTQCGSVPAQSIKVQIKGQMEVS*SHSGLF
Trigger: GAAGAGTCCAGAATGTGACAAAGAGACCTCCATCTG...CCCTTTAATTTGCACTTTAATAGATTGGGCTGGGACACTTCCACACTGTGTCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp ACGACACAGTGTGGAAGTGTCCCAGCCCAATCTATTAAAGTGCAAATTAAAGGGACTAGGATTTCAGGATaGGTTGGGAGATGTGGTTTC +
Preference number: 5 (lower is better)
Translates to: TTQCGSVPAQSIKVQIKGTRISG*VGRCGF
Trigger: GAAACCACATCTCCCAACCAATCCTGAAATCCTAGT...CCCTTTAATTTGCACTTTAATAGATTGGGCTGGGACACTTCCACACTGTGTCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp TACAATAAGCAAAACACAGAACGTCCTTCCCCCAAAGCAAGCCCTCAGACCCTTAAGGTTCTAACCAGATaGCATATTCCTTTCTCCAAC +
Preference number: 5 (lower is better)
Translates to: YNKQNTERPSPKASPQTLKVLTR*HIPFSN
Trigger: GTTGGAGAAAGGAATATGCAATCTGGTTAGAACCTT...AAGGGTCTGAGGGCTTGCTTTGGGGGAAGGACGTTCTGTGTTTTGCTTATTGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp GGACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTTCAAACAGTGTCACATaGGAGGCCAGGGCAAAGGTG +
Preference number: 5 (lower is better)
Translates to: GHIKGHLDASKEIQRNVVSNSVT*EARAKV
Trigger: CACCTTTGCCCTGGCCTCCAATGTGACACTGTTTGA...AACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp CATCAACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAAGCTGGGTACAGTCCGTaGCGTTCAAGTTCAGGGTTC +
Preference number: 5 (lower is better)
Translates to: HQPRATESSLYYECNMVKAGYSP*RSSSGF
Trigger: GAACCCTGAACTTGAACGCAACGGACTGTACCCAGC...TTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTTGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
CDS-3UTR CAA 90 bp CATCAACCAAGAGCAACAGAATCCTCTCTGTACTATGAATGTAACATGGTTAAAATATGGGGTTCGGGGTaGTTACTTTCCAGCCAACGG +
Preference number: 5 (lower is better)
Translates to: HQPRATESSLYYECNMVKIWGSG*LLSSQR
Trigger: CCGTTGGCTGGAAAGTAACAACCCCGAACCCCATAT...TTTAACCATGTTACATTCATAGTACAGAGAGGATTCTGTTGCTCTTGGTTGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS-3UTR CAA 90 bp CAAAGAAACACATACAGAACCATTTCTAACAGCTGTCCCATTTCCAGAAATATATTCACGGTACAGCTGTaGACTGGGGTTAGAGGTGGC +
Preference number: 5 (lower is better)
Translates to: QRNTYRTISNSCPISRNIFTVQL*TGVRGG
Trigger: GCCACCTCTAACCCCAGTCAACAGCTGTACCGTGAA...TATATTTCTGGAAATGGGACAGCTGTTAGAAATGGTTCTGTATGTGTTTCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS TCA 90 bp ATATATCTGGAAGTCAACATTTCAGCTGTAGAAACATCTGTGGTTTaGGGTGAAGATGGTGTAAGAAAATGGGATGGACTGGACTCTTCC +
Preference number: 5 (lower is better)
Translates to: IYLEVNISAVETSVV*GEDGVRKWDGLDSS
Trigger: GGAAGAGTCCAGTCCATCCCATTTTCTTACACCATCTTCACCTCAAACCACAGATGTTTCTACAGCTGAAATGTTGACTTCCAGATATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS-3UTR CAA 90 bp GACACATTAAGGGACACCTGGATGCTTCTAAAGAAATTCAAAGGAATGTTGTTTGATGGGTTTCTCTTGTaGTGGGGTACTCTGGTTCTT +
Preference number: 5 (lower is better)
Translates to: DTLRDTWMLLKKFKGMLFDGFLL*WGTLVL
Trigger: AAGAACCAGAGTACCCCACAACAAGAGAAACCCATC...AAACAACATTCCTTTGAATTTCTTTAGAAGCATCCAGGTGTCCCTTAATGTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
CDS GCA 72 bp GTTCCCTCGTGGAGTGGGGCGCGCAGGGCGGGTTGCTaGACTCGAGAGGTCAAGGGACCGCAGCGTGCGCTC +
Preference number: 6 (lower is better)
Translates to: VPSWSGARRAGC*TREVKGPQRAL
Trigger: GAGCGCACGCTGCGGTCCCTTGACCTCTCGAGTGCAGCAACCCGCCCTGCGCGCCCCACTCCACGAGGGAAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 72 bp CACGTTCCCTCGTGGAGTGGGGCGCGCAGGGCGGGTTaGTGCACTCGAGAGGTCAAGGGACCGCAGCGTGCG +
Preference number: 6 (lower is better)
Translates to: HVPSWSGARRAG*CTREVKGPQRA
Trigger: CGCACGCTGCGGTCCCTTGACCTCTCGAGTGCAGCAACCCGCCCTGCGCGCCCCACTCCACGAGGGAACGTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp GGTCAAGGGACCGCAGCGTGCGCTCCCCGCTCCGGGTaGACATTGCAGACGTGTGAGGTGTGCGAGCCCCCG +
Preference number: 6 (lower is better)
Translates to: GQGTAACAPRSG*TLQTCEVCEPP
Trigger: CGGGGGCTCGCACACCTCACACGTCTGCAATGTCCACCCGGAGCGGGGAGCGCACGCTGCGGTCCCTTGACC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CAA 72 bp GGGACCGCAGCGTGCGCTCCCCGCTCCGGGTGGACATaGCAGACGTGTGAGGTGTGCGAGCCCCCGAAGTGC +
Preference number: 6 (lower is better)
Translates to: GTAACAPRSGWT*QTCEVCEPPKC
Trigger: GCACTTCGGGGGCTCGCACACCTCACACGTCTGCAATGTCCACCCGGAGCGGGGAGCGCACGCTGCGGTCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp GCAGGCCAGCGTGCTCTGTCACGTTCCCTCGTGGAGTaGGGCGCGCAGGGCGGGTTGCTGCACTCGAGAGGT +
Preference number: 6 (lower is better)
Translates to: AGQRALSRSLVE*GAQGGLLHSRG
Trigger: ACCTCTCGAGTGCAGCAACCCGCCCTGCGCGCCCCACTCCACGAGGGAACGTGACAGAGCACGCTGGCCTGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp GGACAGCAGGCCAGCGTGCTCTGTCACGTTCCCTCGTaGAGTGGGGCGCGCAGGGCGGGTTGCTGCACTCGA +
Preference number: 6 (lower is better)
Translates to: GQQASVLCHVPS*SGARRAGCCTR
Trigger: TCGAGTGCAGCAACCCGCCCTGCGCGCCCCACTCCACGAGGGAACGTGACAGAGCACGCTGGCCTGCTGTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CAA 72 bp TCACGTTCCCTCGTGGAGTGGGGCGCGCAGGGCGGGTaGCTGCACTCGAGAGGTCAAGGGACCGCAGCGTGC +
Preference number: 6 (lower is better)
Translates to: SRSLVEWGAQGG*LHSRGQGTAAC
Trigger: GCACGCTGCGGTCCCTTGACCTCTCGAGTGCAGCAACCCGCCCTGCGCGCCCCACTCCACGAGGGAACGTGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp GTTGGCTCCCCAGGTTCCAGAGCAGGGTGGGAGGCTTaGCGGGACACCCAGGTGCCAGCCACTTGCGTGTGC +
Preference number: 6 (lower is better)
Translates to: VGSPGSRAGWEA*RDTQVPATCVC
Trigger: GCACACGCAAGTGGCTGGCACCTGGGTGTCCCGCCAAGCCTCCCACCCTGCTCTGGAACCTGGGGAGCCAAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CAA 90 bp GGAGAGCACAGTTGGCTCCCCAGGTTCCAGAGCAGGGTGGGAGGCTaGGCGGGACACCCAGGTGCCAGCCACTTGCGTGTGCACAGTCCC +
Preference number: 6 (lower is better)
Translates to: GEHSWLPRFQSRVGG*AGHPGASHLRVHSP
Trigger: GGGACTGTGCACACGCAAGTGGCTGGCACCTGGGTGTCCCGCCAAGCCTCCCACCCTGCTCTGGAACCTGGGGAGCCAACTGTGCTCTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp GTGCGCTCCCCGCTCCGGGTGGACATTGCAGACGTGTaGGGTGTGCGAGCCCCCGAAGTGCTGTCTGCCAGA +
Preference number: 6 (lower is better)
Translates to: VRSPLRVDIADV*GVRAPEVLSAR
Trigger: TCTGGCAGACAGCACTTCGGGGGCTCGCACACCTCACACGTCTGCAATGTCCACCCGGAGCGGGGAGCGCAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 72 bp GGGTTCGGGGTTGTTACTTTCCAGCCAACGGTTCCTTaGAGCGGCCGCGCTCACGCCTCTGGGGACACGGCC +
Preference number: 6 (lower is better)
Translates to: GFGVVTFQPTVP*SGRAHASGDTA
Trigger: GGCCGTGTCCCCAGAGGCGTGAGCGCGGCCGCTGCAAGGAACCGTTGGCTGGAAAGTAACAACCCCGAACCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS CAA 90 bp CAGAGCAGGGTGGGAGGCTTGGCGGGACACCCAGGTGCCAGCCACTaGCGTGTGCACAGTCCCTTCTTCTGGGAGCTCCCTCGTCCTCTC +
Preference number: 6 (lower is better)
Translates to: QSRVGGLAGHPGASH*RVHSPFFWELPRPL
Trigger: GAGAGGACGAGGGAGCTCCCAGAAGAAGGGACTGTGCACACGCAAGTGGCTGGCACCTGGGTGTCCCGCCAAGCCTCCCACCCTGCTCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp AGGACAACAAGCTGCTGTGGGCAGTTGGCGCCGTGGTaGTCTCAGGGGAGGGTCCACGGCGCAGACCAGCGA +
Preference number: 6 (lower is better)
Translates to: RTTSCCGQLAPW*SQGRVHGADQR
Trigger: TCGCTGGTCTGCGCCGTGGACCCTCCCCTGAGATCACCACGGCGCCAACTGCCCACAGCAGCTTGTTGTCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS GCA 72 bp CCAGAGCAGGGTGGGAGGCTTGGCGGGACACCCAGGTaGCAGCCACTTGCGTGTGCACAGTCCCTTCTTCTG +
Preference number: 6 (lower is better)
Translates to: PEQGGRLGGTPR*QPLACAQSLLL
Trigger: CAGAAGAAGGGACTGTGCACACGCAAGTGGCTGGCACCTGGGTGTCCCGCCAAGCCTCCCACCCTGCTCTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CAA 72 bp GTGGGAGGCTTGGCGGGACACCCAGGTGCCAGCCACTaGCGTGTGCACAGTCCCTTCTTCTGGGAGCTCCCT +
Preference number: 6 (lower is better)
Translates to: VGGLAGHPGASH*RVHSPFFWELP
Trigger: AGGGAGCTCCCAGAAGAAGGGACTGTGCACACGCAAGTGGCTGGCACCTGGGTGTCCCGCCAAGCCTCCCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp CTCAGTCAGAGGCATGGCCCTTCCATCGCCCGCTTCTaGGCTGCTGGCAAGCTGACGTCCTCCGAAGGAGGG +
Preference number: 6 (lower is better)
Translates to: LSQRHGPSIARF*AAGKLTSSEGG
Trigger: CCCTCCTTCGGAGGACGTCAGCTTGCCAGCAGCTCAGAAGCGGGCGATGGAAGGGCCATGCCTCTGACTGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS GCA 72 bp TCAGAGGCATGGCCCTTCCATCGCCCGCTTCTGAGCTaGTGGCAAGCTGACGTCCTCCGAAGGAGGGGGCAT +
Preference number: 6 (lower is better)
Translates to: SEAWPFHRPLLS*WQADVLRRRGH
Trigger: ATGCCCCCTCCTTCGGAGGACGTCAGCTTGCCAGCAGCTCAGAAGCGGGCGATGGAAGGGCCATGCCTCTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS GCA 72 bp GACAGGGGCTGGAGAGACATTCGTTCACATCCACACTaGAGTTCTCCCCCTGCCAGGCAGGCGGGCACACAC +
Preference number: 6 (lower is better)
Translates to: DRGWRDIRSHPH*SSPPARQAGTH
Trigger: GTGTGTGCCCGCCTGCCTGGCAGGGGGAGAACTGCAGTGTGGATGTGAACGAATGTCTCTCCAGCCCCTGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp CGCTTACACAAGCTGCCCGCTCGAAAGACCCGCCTCTaGGACCCCAAGAGCTGGCAGACTTCAGCAGAGGAC +
Preference number: 6 (lower is better)
Translates to: RLHKLPARKTRL*DPKSWQTSAED
Trigger: GTCCTCTGCTGAAGTCTGCCAGCTCTTGGGGTCTCAGAGGCGGGTCTTTCGAGCGGGCAGCTTGTGTAAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 72 bp GACCAGCGATGTCCGCTCTGTGGGAGGAAGCCATGTTaGTCCACTCAGCACTTGTCTCAGGGAGGAGAGGGG +
Preference number: 6 (lower is better)
Translates to: DQRCPLCGRKPC*STQHLSQGGEG
Trigger: CCCCTCTCCTCCCTGAGACAAGTGCTGAGTGGAGCAACATGGCTTCCTCCCACAGAGCGGACATCGCTGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS CCA 72 bp GACTCAGGAAGGCTCTCCAAGGACAACAAGCTGCTGTaGGCAGTTGGCGCCGTGGTGATCTCAGGGGAGGGT +
Preference number: 6 (lower is better)
Translates to: DSGRLSKDNKLL*AVGAVVISGEG
Trigger: ACCCTCCCCTGAGATCACCACGGCGCCAACTGCCCACAGCAGCTTGTTGTCCTTGGAGAGCCTTCCTGAGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS TCA 72 bp CCAGGAGAATGGTGGCCCGGAGTGTTCCTGGCCGGATaGATTTCTCTTCTGGGAGAGCACAGTTGGCTCCCC +
Preference number: 6 (lower is better)
Translates to: PGEWWPGVFLAG*ISLLGEHSWLP
Trigger: GGGGAGCCAACTGTGCTCTCCCAGAAGAGAAATTCATCCGGCCAGGAACACTCCGGGCCACCATTCTCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 72 bp GGACCAAGGGGCCCCTGGAGGAAGGCTCACTGTTACTaGTTTGGTAGAGTCTGTGGGCGGAGACACCAAGCT +
Preference number: 6 (lower is better)
Translates to: GPRGPWRKAHCY*FGRVCGRRHQA
Trigger: AGCTTGGTGTCTCCGCCCACAGACTCTACCAAAGCAGTAACAGTGAGCCTTCCTCCAGGGGCCCCTTGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 72 bp AGACATTCGTTCACATCCACACTGCAGTTCTCCCCCTaGCAGGCAGGCGGGCACACACATCGATACCCACGG +
Preference number: 6 (lower is better)
Translates to: RHSFTSTLQFSP*QAGGHTHRYPR
Trigger: CCGTGGGTATCGATGTGTGTGCCCGCCTGCCTGGCAGGGGGAGAACTGCAGTGTGGATGTGAACGAATGTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp GGCCCGGAGTGTTCCTGGCCGGATGAATTTCTCTTCTaGGAGAGCACAGTTGGCTCCCCAGGTTCCAGAGCA +
Preference number: 6 (lower is better)
Translates to: GPECSWPDEFLF*ESTVGSPGSRA
Trigger: TGCTCTGGAACCTGGGGAGCCAACTGTGCTCTCCCAGAAGAGAAATTCATCCGGCCAGGAACACTCCGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp GGGATGGACTGGACTCTTCCGCACGGCCCAGCTCTGTaGTCCTTTCTCCTGCTGACGTGGTTGAAGTGGTCA +
Preference number: 6 (lower is better)
Translates to: GMDWTLPHGPAL*SFLLLTWLKWS
Trigger: TGACCACTTCAACCACGTCAGCAGGAGAAAGGACCACAGAGCTGGGCCGTGCGGAAGAGTCCAGTCCATCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CAA 72 bp AGACCAGCGATGTCCGCTCTGTGGGAGGAAGCCATGTaGCTCCACTCAGCACTTGTCTCAGGGAGGAGAGGG +
Preference number: 6 (lower is better)
Translates to: RPAMSALWEEAM*LHSALVSGRRG
Trigger: CCCTCTCCTCCCTGAGACAAGTGCTGAGTGGAGCAACATGGCTTCCTCCCACAGAGCGGACATCGCTGGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS GCA 72 bp CAGATGTCAAAGCTGGAGACATCTGGGCTAAACTGGTaGTTGTGGCTGGAAGGGCTGGCCCCGTGGAGAACC +
Preference number: 6 (lower is better)
Translates to: QMSKLETSGLNW*LWLEGLAPWRT
Trigger: GGTTCTCCACGGGGCCAGCCCTTCCAGCCACAAGCACCAGTTTAGCCCAGATGTCTCCAGCTTTGACATCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp TGGCAGATGTCAAAGCTGGAGACATCTGGGCTAAACTaGTGCTTGTGGCTGGAAGGGCTGGCCCCGTGGAGA +
Preference number: 6 (lower is better)
Translates to: WQMSKLETSGLN*CLWLEGLAPWR
Trigger: TCTCCACGGGGCCAGCCCTTCCAGCCACAAGCACCAGTTTAGCCCAGATGTCTCCAGCTTTGACATCTGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp TGGCTTCTCGGCCCCACTCTTGCGAGCGAGGATTCTTaGGGACATCGGTGTATGGGGACATTTGGAAGTCCC +
Preference number: 6 (lower is better)
Translates to: WLLGPTLASEDS*GHRCMGTFGSP
Trigger: GGGACTTCCAAATGTCCCCATACACCGATGTCCCCAAGAATCCTCGCTCGCAAGAGTGGGGCCGAGAAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp GTCTGTGTGGTCACTGGAAGTCCTCTGCCCAGCGTCTaGGCCATGTTCTCGAGTGTAGCTAAGTCCGGTGAG +
Preference number: 6 (lower is better)
Translates to: VCVVTGSPLPSV*AMFSSVAKSGE
Trigger: CTCACCGGACTTAGCTACACTCGAGAACATGGCTCAGACGCTGGGCAGAGGACTTCCAGTGACCACACAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126532.2
CDS TCA 72 bp CGTGTAGGTTGGCAGGTTGGACGTATGCAGAACCGGTaGCTCTGTGGAAGACTGAGCAGGCTCGTCATCGTC +
Preference number: 6 (lower is better)
Translates to: RVGWQVGRMQNR*LCGRLSRLVIV
Trigger: GACGATGACGAGCCTGCTCAGTCTTCCACAGAGTCACCGGTTCTGCATACGTCCAACCTGCCAACCTACACG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp GCTGATGAGAATGGCTGGGGTTGTGACGGTGAGGGTTaGGTGGAAGGCACCCGTGAATCAGATGGGTCCTCA +
Preference number: 6 (lower is better)
Translates to: ADENGWGCDGEG*VEGTRESDGSS
Trigger: TGAGGACCCATCTGATTCACGGGTGCCTTCCACTCAACCCTCACCGTCACAACCCCAGCCATTCTCATCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp CCTGCTGACGTGGTTGAAGTGGTCAGAGGGATTGGCTaGGTGGTAGGATCCGTATGCTCCCGGTTCCCTTCT +
Preference number: 6 (lower is better)
Translates to: PADVVEVVRGIG*VVGSVCSRFPS
Trigger: AGAAGGGAACCGGGAGCATACGGATCCTACCACTCAGCCAATCCCTCTGACCACTTCAACCACGTCAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp GTCTGTGTGGTCACTGGAAGTCCTCTGCCCAGCGTCTaGGCCATGTTCTCGAGTGTAGCTAAGTCCGGTGAC +
Preference number: 6 (lower is better)
Translates to: VCVVTGSPLPSV*AMFSSVAKSGD
Trigger: GTCACCGGACTTAGCTACACTCGAGAACATGGCTCAGACGCTGGGCAGAGGACTTCCAGTGACCACACAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 72 bp ATCCGGGCAGTCCAGTGTAGGCTGGGTACAGTCCGTTaGGTTCAAGTTCAGGGTTCCTTACGTTTGTGGGCG +
Preference number: 6 (lower is better)
Translates to: IRAVQCRLGTVR*VQVQGSLRLWA
Trigger: CGCCCACAAACGTAAGGAACCCTGAACTTGAACGCAACGGACTGTACCCAGCCTACACTGGACTGCCCGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 72 bp ACATTGCAGACGTGTGAGGTGTGCGAGCCCCCGAAGTaGTGTCTGCCAGATCAGAGCTGTCACTCAGCATTG +
Preference number: 6 (lower is better)
Translates to: TLQTCEVCEPPK*CLPDQSCHSAL
Trigger: CAATGCTGAGTGACAGCTCTGATCTGGCAGACAGCACTTCGGGGGCTCGCACACCTCACACGTCTGCAATGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp TTGGCAGGTTGGACGTATGCAGAACCGGTGACTCTGTaGAAGACTGAGCAGGCTCGTCATCGTCGGAGGACA +
Preference number: 6 (lower is better)
Translates to: LAGWTYAEPVTL*KTEQARHRRRT
Trigger: TGTCCTCCGACGATGACGAGCCTGCTCAGTCTTCCACAGAGTCACCGGTTCTGCATACGTCCAACCTGCCAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp TCAAAGCTGGAGACATCTGGGCTAAACTGGTGCTTGTaGCTGGAAGGGCTGGCCCCGTGGAGAACCCTGTTA +
Preference number: 6 (lower is better)
Translates to: SKLETSGLNWCL*LEGLAPWRTLL
Trigger: TAACAGGGTTCTCCACGGGGCCAGCCCTTCCAGCCACAAGCACCAGTTTAGCCCAGATGTCTCCAGCTTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp GCAAGAGTGTCTCGATCCGGGCAGTCCAGTGTAGGCTaGGTACAGTCCGTTGCGTTCAAGTTCAGGGTTCCT +
Preference number: 6 (lower is better)
Translates to: ARVSRSGQSSVG*VQSVAFKFRVP
Trigger: AGGAACCCTGAACTTGAACGCAACGGACTGTACCCAGCCTACACTGGACTGCCCGGATCGAGACACTCTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp TTGGACGTATGCAGAACCGGTGACTCTGTGGAAGACTaGGCAGGCTCGTCATCGTCGGAGGACATGCTACTC +
Preference number: 6 (lower is better)
Translates to: LDVCRTGDSVED*AGSSSSEDMLL
Trigger: GAGTAGCATGTCCTCCGACGATGACGAGCCTGCTCAGTCTTCCACAGAGTCACCGGTTCTGCATACGTCCAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp AGGCAGGCGGGCACACACATCGATACCCACGGCCAGTaGGGTCCACAATGCATTTGCCATCATGAAGACAAG +
Preference number: 6 (lower is better)
Translates to: RQAGTHIDTHGQ*GPQCICHHEDK
Trigger: CTTGTCTTCATGATGGCAAATGCATTGTGGACCTCACTGGCCGTGGGTATCGATGTGTGTGCCCGCCTGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 72 bp TTCTCGTGCATTTCAATGGCTTCTCGGCCCCACTCTTaGGAGCGAGGATTCTTGGGGACATCGGTGTATGGG +
Preference number: 6 (lower is better)
Translates to: FSCISMASRPHS*ERGFLGTSVYG
Trigger: CCCATACACCGATGTCCCCAAGAATCCTCGCTCGCAAGAGTGGGGCCGAGAAGCCATTGAAATGCACGAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp TGGGACTGGTCACAGGAGAGTGAGTCGTCTGGGGCATaGCAGATGTCAAAGCTGGAGACATCTGGGCTAAAC +
Preference number: 6 (lower is better)
Translates to: WDWSQESESSGA*QMSKLETSGLN
Trigger: GTTTAGCCCAGATGTCTCCAGCTTTGACATCTGCCATGCCCCAGACGACTCACTCTCCTGTGACCAGTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CAA 72 bp GTTCTCGTGCATTTCAATGGCTTCTCGGCCCCACTCTaGCGAGCGAGGATTCTTGGGGACATCGGTGTATGG +
Preference number: 6 (lower is better)
Translates to: VLVHFNGFSAPL*RARILGDIGVW
Trigger: CCATACACCGATGTCCCCAAGAATCCTCGCTCGCAAGAGTGGGGCCGAGAAGCCATTGAAATGCACGAGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CAA 72 bp AAGTGCTGTCTGCCAGATCAGAGCTGTCACTCAGCATaGCACCATCTTCCGGAGACGATGGGTGGTCTGAGG +
Preference number: 6 (lower is better)
Translates to: KCCLPDQSCHSA*HHLPETMGGLR
Trigger: CCTCAGACCACCCATCGTCTCCGGAAGATGGTGCAATGCTGAGTGACAGCTCTGATCTGGCAGACAGCACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152782.8
CDS TCA 72 bp CTTTCTCCAACTGATACCCGACTGGGCATCTGCAGGTaGACGATCCCTGAGTATTGTTGCACGTGGCTAGGG +
Preference number: 6 (lower is better)
Translates to: LSPTDTRLGICR*TIPEYCCTWLG
Trigger: CCCTAGCCACGTGCAACAATACTCAGGGATCGTTCACCTGCAGATGCCCAGTCGGGTATCAGTTGGAGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 72 bp ACTTGCACTGACAGAGCGCGACACCATCCAGGTCGGTaGAGATGGAGGTCTCTTTGTCACATTCTGGACTCT +
Preference number: 6 (lower is better)
Translates to: TCTDRARHHPGR*RWRSLCHILDS
Trigger: AGAGTCCAGAATGTGACAAAGAGACCTCCATCTGCACCGACCTGGATGGTGTCGCGCTCTGTCAGTGCAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 72 bp GTCATCTGCAGGAGGTTTTTGGTGCTTCCGTTCTCGTaGATTTCAATGGCTTCTCGGCCCCACTCTTGCGAG +
Preference number: 6 (lower is better)
Translates to: VICRRFLVLPFS*ISMASRPHSCE
Trigger: CTCGCAAGAGTGGGGCCGAGAAGCCATTGAAATGCACGAGAACGGAAGCACCAAAAACCTCCTGCAGATGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 72 bp AGTGCTGTCTGCCAGATCAGAGCTGTCACTCAGCATTaGACCATCTTCCGGAGGAGAATGCTCTCTGAGAGG +
Preference number: 6 (lower is better)
Translates to: SAVCQIRAVTQH*TIFRRRMLSER
Trigger: CCTCTCAGAGAGCATTCTCCTCCGGAAGATGGTGCAATGCTGAGTGACAGCTCTGATCTGGCAGACAGCACT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232568.2
CDS CCA 72 bp GAGTATTGTTGCACGTGGCTAGGGGAGGACAGGGGCTaGAGAGACATTCGTTCACATCCACACTGCAGTTCT +
Preference number: 6 (lower is better)
Translates to: EYCCTWLGEDRG*RDIRSHPHCSS
Trigger: AGAACTGCAGTGTGGATGTGAACGAATGTCTCTCCAGCCCCTGTCCTCCCCTAGCCACGTGCAACAATACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp CAGGTCGGTGCAGATGGAGGTCTCTTTGTCACATTCTaGACTCTTCCGCTTACACAAGCTGCCCGCTCGAAA +
Preference number: 6 (lower is better)
Translates to: QVGADGGLFVTF*TLPLTQAARSK
Trigger: TTTCGAGCGGGCAGCTTGTGTAAGCGGAAGAGTCCAGAATGTGACAAAGAGACCTCCATCTGCACCGACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp GGAGGTTTTTGGTGCTTCCGTTCTCGTGCATTTCAATaGCTTCTCGGCCCCACTCTTGCGAGCGAGGATTCT +
Preference number: 6 (lower is better)
Translates to: GGFWCFRSRAFQ*LLGPTLASEDS
Trigger: AGAATCCTCGCTCGCAAGAGTGGGGCCGAGAAGCCATTGAAATGCACGAGAACGGAAGCACCAAAAACCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp TGCCATCATGAAGACAAGGGTTCACGGTACAGCTGTTaGCTGGGGTTAGAGGTGGCAAGGCTGTTGGTGACT +
Preference number: 6 (lower is better)
Translates to: CHHEDKGSRYSC*LGLEVARLLVT
Trigger: AGTCACCAACAGCCTTGCCACCTCTAACCCCAGTCAACAGCTGTACCGTGAACCCTTGTCTTCATGATGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 72 bp GAGCGGACTGACATTGAAGTTATACCAAGTCTGGAGTaGTCAGGGAAACCCTCTGTCTCATCTGCAGGGTCC +
Preference number: 6 (lower is better)
Translates to: ERTDIEVIPSLE*SGKPSVSSAGS
Trigger: GGACCCTGCAGATGAGACAGAGGGTTTCCCTGAGCACTCCAGACTTGGTATAACTTCAATGTCAGTCCGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS CCA 72 bp AAGTCAAAGCTTCTACATGTGACAGAGTACTGGGACTaGTCACAGGAGAGTGAGTCGTCTGGGGCATGGCAG +
Preference number: 6 (lower is better)
Translates to: KSKLLHVTEYWD*SQESESSGAWQ
Trigger: CTGCCATGCCCCAGACGACTCACTCTCCTGTGACCAGTCCCAGTACTCTGTCACATGTAGAAGCTTTGACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CAA 72 bp GCTGAGCTTTCTGCCGCATCTGTAGATGTTTTCTTCTaGGTGAGGATCCATCGTCCGGTGCTCTCTCCACCA +
Preference number: 6 (lower is better)
Translates to: AELSAASVDVFF*VRIHRPVLSPP
Trigger: TGGTGGAGAGAGCACCGGACGATGGATCCTCACCAAGAAGAAAACATCTACAGATGCGGCAGAAAGCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS CAA 90 bp GCTCAGTGCCTTCTCCATCTCCCAGATGCTCAGTTAGTCCACTGTTaGTCCTTGAGTCCTTCACAGAGGGTGAAGAGCGGACTGACATTG +
Preference number: 6 (lower is better)
Translates to: AQCLLHLPDAQLVHC*SLSPSQRVKSGLTL
Trigger: CAATGTCAGTCCGCTCTTCACCCTCTGTGAAGGACTCAAGGACAAACAGTGGACTAACTGAGCATCTGGGAGATGGAGAAGGCACTGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS CAA 90 bp GGATGCAAAGCTGAGCTTTCTGCCGCATCTGTAGATGTTTTCTTCTaGGTGAGGATCCATCGTCCGGTGCTCTCTCCACCACCAATGGAG +
Preference number: 6 (lower is better)
Translates to: GCKAELSAASVDVFF*VRIHRPVLSPPPME
Trigger: CTCCATTGGTGGTGGAGAGAGCACCGGACGATGGATCCTCACCAAGAAGAAAACATCTACAGATGCGGCAGAAAGCTCAGCTTTGCATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS CAA 90 bp GTGATGGCCCCCTCAGTTGAGATGTGTGGCACTAGGATTTCAGGATaGGTTGGGAGATGTGGTTTCTTCGGGGTAGTGTGCACAACTACA +
Preference number: 6 (lower is better)
Translates to: VMAPSVEMCGTRISG*VGRCGFFGVVCTTT
Trigger: TGTAGTTGTGCACACTACCCCGAAGAAACCACATCTCCCAACCAATCCTGAAATCCTAGTGCCACACATCTCAACTGAGGGGGCCATCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp ACCATTCTTAATACTTCCAGAAGACGATGGGTGGTCTaGGGGAGGAGGGTGACTCTGACTCCAGGAGAATGG +
Preference number: 6 (lower is better)
Translates to: TILNTSRRRWVV*GRRVTLTPGEW
Trigger: CCATTCTCCTGGAGTCAGAGTCACCCTCCTCCCTCAGACCACCCATCGTCTTCTGGAAGTATTAAGAATGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS TCA 72 bp TCAGCATTGCACCATCTTCCGGAGGAGAATGCTCTCTaGGAGGTGCTGAGGAATCCAGACTTTCGGAAGAAG +
Preference number: 6 (lower is better)
Translates to: SALHHLPEENAL*EVLRNPDFRKK
Trigger: CTTCTTCCGAAAGTCTGGATTCCTCAGCACCTCTCAGAGAGCATTCTCCTCCGGAAGATGGTGCAATGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232568.2
CDS GCA 72 bp GTCATTTTTACTCTTTCTGCAACAGGTAACAATGAGTaGCACGCCCAGGATGAGCAAGAGGCCACCTCCTGC +
Preference number: 6 (lower is better)
Translates to: VIFTLSATGNNE*HAQDEQEATSC
Trigger: GCAGGAGGTGGCCTCTTGCTCATCCTGGGCGTGGCACTCATTGTTACCTGTTGCAGAAAGAGTAAAAATGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp GTAGTCTCTCCTCCTGCTCTCGTCGCTGATGAAAGATaGGTTATACTGTCCCGGGAAGATGCAAGAGTGTCT +
Preference number: 6 (lower is better)
Translates to: VVSPPALVADER*VILSREDARVS
Trigger: AGACACTCTTGCATCTTCCCGGGACAGTATAACCCATCTTTCATCAGCGACGAGAGCAGGAGGAGAGACTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CAA 72 bp CATCTCCCAGATGCTCAGTTAGTCCACTGTTTGTCCTaGAGTCCTTCACAGAGGGTGAAGAGCGGACTGACA +
Preference number: 6 (lower is better)
Translates to: HLPDAQLVHCLS*SPSQRVKSGLT
Trigger: TGTCAGTCCGCTCTTCACCCTCTGTGAAGGACTCAAGGACAAACAGTGGACTAACTGAGCATCTGGGAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS CAA 72 bp CTTCTCCATCTCCCAGATGCTCAGTTAGTCCACTGTTaGTCCTTGAGTCCTTCACAGAGGGTGAAGAGCGGA +
Preference number: 6 (lower is better)
Translates to: LLHLPDAQLVHC*SLSPSQRVKSG
Trigger: TCCGCTCTTCACCCTCTGTGAAGGACTCAAGGACAAACAGTGGACTAACTGAGCATCTGGGAGATGGAGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS CAA 72 bp CCCTCAGTTGAGATGTGTGGCACTAGGATTTCAGGATaGGTTGGGAGATGTGGTTTCTTCGGGGTAGTGTGC +
Preference number: 6 (lower is better)
Translates to: PSVEMCGTRISG*VGRCGFFGVVC
Trigger: GCACACTACCCCGAAGAAACCACATCTCCCAACCAATCCTGAAATCCTAGTGCCACACATCTCAACTGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CAA 72 bp TTCTGGATCCTGTCTGCCAGGTCAAACAGTGTCACATaGGAGGCCAGGGCAAAGGTGGTTTTCAGTGAGATG +
Preference number: 6 (lower is better)
Translates to: FWILSARSNSVT*EARAKVVFSEM
Trigger: CATCTCACTGAAAACCACCTTTGCCCTGGCCTCCAATGTGACACTGTTTGACCTGGCAGACAGGATCCAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp AGCCTAGGGATGTCCCACTCTCTGTTTGAGAAGGTGTaGTTCTTCTTTGTGACCTGGAACTGCTGGGTGACT +
Preference number: 6 (lower is better)
Translates to: SLGMSHSLFEKV*FFFVTWNCWVT
Trigger: AGTCACCCAGCAGTTCCAGGTCACAAAGAAGAATCACACCTTCTCAAACAGAGAGTGGGACATCCCTAGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp TGTCACATTGGAGGCCAGGGCAAAGGTGGTTTTCAGTaGGATGAAAACTGTACTGGGCTCCCTAGACACATG +
Preference number: 6 (lower is better)
Translates to: CHIGGQGKGGFQ*DENCTGLPRHM
Trigger: CATGTGTCTAGGGAGCCCAGTACAGTTTTCATCTCACTGAAAACCACCTTTGCCCTGGCCTCCAATGTGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp CATCTTCACATGCTCGGCAAGAGTGATCCATCTTGTTaGACTGGAAGTAGCCAGACTTGCACTGACAGAGCG +
Preference number: 6 (lower is better)
Translates to: HLHMLGKSDPSC*TGSSQTCTDRA
Trigger: CGCTCTGTCAGTGCAAGTCTGGCTACTTCCAGTTCAACAAGATGGATCACTCTTGCCGAGCATGTGAAGATG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS GCA 72 bp AGTAGTACACGTCTGTCATCTGCAGGAGGTTTTTGGTaGTTCCGTTCTCGTGCATTTCAATGGCTTCTCGGC +
Preference number: 6 (lower is better)
Translates to: SSTRLSSAGGFW*FRSRAFQWLLG
Trigger: GCCGAGAAGCCATTGAAATGCACGAGAACGGAAGCACCAAAAACCTCCTGCAGATGACAGACGTGTACTACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp GTGAAGAGCGGACTGACATTGAAGTTATACCAAGTCTaGAGTGCTCAGGGAAACCCTCTGTCTCATCTGCAG +
Preference number: 6 (lower is better)
Translates to: VKSGLTLKLYQV*SAQGNPLSHLQ
Trigger: CTGCAGATGAGACAGAGGGTTTCCCTGAGCACTCCAGACTTGGTATAACTTCAATGTCAGTCCGCTCTTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS CCA 72 bp GGGTACTCTGGTTCTTGGGGTTTGCTGTTTGATTGCTaGGGATCAATGCAATGGCTGATATTGCCGTCGACA +
Preference number: 6 (lower is better)
Translates to: GYSGSWGLLFDC*GSMQWLILPST
Trigger: TGTCGACGGCAATATCAGCCATTGCATTGATCCCCAGCAATCAAACAGCAAACCCCAAGAACCAGAGTACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp GCGAGTAGTACACGTCTGTCATCTGCAGGAGGTTTTTaGTGCTTCCGTTCTCGTGCATTTCAATGGCTTCTC +
Preference number: 6 (lower is better)
Translates to: ASSTRLSSAGGF*CFRSRAFQWLL
Trigger: GAGAAGCCATTGAAATGCACGAGAACGGAAGCACCAAAAACCTCCTGCAGATGACAGACGTGTACTACTCGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000126532.2
ENSMUST00000128105.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CAA 90 bp TGTTTGTCCTTGAGTCCTTCACAGAGGGTGAAGAGCGGACTGACATaGAAGTTATACCAAGTCTGGAGTGCTCAGGGAAACCCTCTGTCT +
Preference number: 6 (lower is better)
Translates to: CLSLSPSQRVKSGLT*KLYQVWSAQGNPLS
Trigger: AGACAGAGGGTTTCCCTGAGCACTCCAGACTTGGTATAACTTCAATGTCAGTCCGCTCTTCACCCTCTGTGAAGGACTCAAGGACAAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS CCA 72 bp AAGGCACCCGTGAATCAGATGGGTCCTCAACAGGTTTaGTACCGGTATCAAGAACCAAGGTGTTTGGCATAT +
Preference number: 6 (lower is better)
Translates to: KAPVNQMGPQQV*YRYQEPRCLAY
Trigger: ATATGCCAAACACCTTGGTTCTTGATACCGGTACCAAACCTGTTGAGGACCCATCTGATTCACGGGTGCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp TCCGAAGGAGGGGGCATCACTTTGCCAGTGTATAGATaGAAGTCCATATCCATTTTCTGTAGACAGCTCAGT +
Preference number: 6 (lower is better)
Translates to: SEGGGITLPVYR*KSISIFCRQLS
Trigger: ACTGAGCTGTCTACAGAAAATGGATATGGACTTCCATCTATACACTGGCAAAGTGATGCCCCCTCCTTCGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS CAA 90 bp TTGACATATTTCTGGATCCTGTCTGCCAGGTCAAACAGTGTCACATaGGAGGCCAGGGCAAAGGTGGTTTTCAGTGAGATGAAAACTGTA +
Preference number: 6 (lower is better)
Translates to: LTYFWILSARSNSVT*EARAKVVFSEMKTV
Trigger: TACAGTTTTCATCTCACTGAAAACCACCTTTGCCCTGGCCTCCAATGTGACACTGTTTGACCTGGCAGACAGGATCCAGAAATATGTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS TCA 72 bp TGTGTCAGTGATAAGCATGCTCTTTGTCTGGGTGACTaGTGGGTTTTGGAGAGCGGTGAAATTATTACCATT +
Preference number: 6 (lower is better)
Translates to: CVSDKHALCLGD*WVLESGEIITI
Trigger: AATGGTAATAATTTCACCGCTCTCCAAAACCCATCAGTCACCCAGACAAAGAGCATGCTTATCACTGACACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2
CDS TCA 72 bp GAAGTCAACATTTCAGCTGTAGAAACATCTGTGGTTTaGGGTGAAGATGGTGTAAGAAAATGGGATGGACTG +
Preference number: 6 (lower is better)
Translates to: EVNISAVETSVV*GEDGVRKWDGL
Trigger: CAGTCCATCCCATTTTCTTACACCATCTTCACCTCAAACCACAGATGTTTCTACAGCTGAAATGTTGACTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126532.2
ENSMUST00000152782.8
ENSMUST00000232568.2
CDS CCA 72 bp ATAAGCATGCTCTTTGTCTGGGTGACTGATGGGTTTTaGAGAGCGGTGAAATTATTACCATTCTTAATACTT +
Preference number: 6 (lower is better)
Translates to: ISMLFVWVTDGF*RAVKLLPFLIL
Trigger: AAGTATTAAGAATGGTAATAATTTCACCGCTCTCCAAAACCCATCAGTCACCCAGACAAAGAGCATGCTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126532.2
ENSMUST00000232568.2