RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HECTD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035247

Ensembl transcript IDs: ENSMUST00000042052.9, ENSMUST00000179265.8

Found 667 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTaGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTT +
Preference number: 1 (lower is better)
Translates to: ALVKQHSVLCWIPAG*VVKGFVLSLAAKEL
Trigger: AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
3UTR TCA 90 bp CCAGCAAAATGGGGGTCAGTGATGGCAACTGTAGTGTATGAAGTATaGAACGATGACAAACTTGATACAAACACGGTTCCATTTACAGTG +
Preference number: 1 (lower is better)
Translates to: PAKWGSVMATVVYEV*NDDKLDTNTVPFTV
Trigger: CACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTCATCGTTTCATACTTCATACACTACAGTTGCCATCACTGACCCCCATTTTGCTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
3UTR-3UTR CCA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGCACAGTGTCCTGTGCTaGATACCTGCTGGCTGGGTA +
Preference number: 2 (lower is better)
Translates to: DRQRARDTLVVQVSVIKEHSVLC*IPAGWV
Trigger: TACCCAGCCAGCAGGTATCCAGCACAGGACACTGTG...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
3UTR-3UTR TCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAACCTTTTCCAGTCACGTaGGCCCTTGTAAAGCAACAC +
Preference number: 2 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKPFPVT*ALVKQH
Trigger: GTGTTGCTTTACAAGGGCTCACGTGACTGGAAAAGG...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
3UTR-3UTR GCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGACAACACAGTGTCCTGTaGTGGATACCTGCTGGCTGG +
Preference number: 2 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRQHSVL*WIPAGW
Trigger: CCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTG...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
3UTR GCA 72 bp GTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTaGCCTGTGGAACAGTTAGGTAGAGCCACCTTTTCC +
Preference number: 3 (lower is better)
Translates to: VPFTVSTDDLRG*PVEQLGRATFS
Trigger: GGAAAAGGTGGCTCTACCTAACTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
3UTR-3UTR CAA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAAGGCAAGTGTCATTATaGTGGAGAATCATACACTTC +
Preference number: 3 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKRQVSL*WRIIHF
Trigger: GAAGTGTATGATTCTCCACAATAATGACACTTGCCT...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
3UTR-3UTR CAA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAGGCAAGTGTCATTATaGTGGAGAATCATACACTTC +
Preference number: 3 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVRQVSL*WRIIHF
Trigger: GAAGTGTATGATTCTCCACAATAATGACACTTGCCT...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
3UTR-3UTR CAA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAAACGATGACAAACTaGATACAAACACGGTTCCAT +
Preference number: 3 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKETMTN*IQTRFH
Trigger: ATGGAACCGTGTTTGTATCAAGTTTGTCATCGTTTC...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
3UTR-3UTR CAA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGTTAAAGGGTTTGTTTaGTCATTAGCAGCTAAGGAA +
Preference number: 3 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKVKGFV*SLAAKE
Trigger: TTCCTTAGCTGCTAATGACAAAACAAACCCTTTAAC...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
3UTR CCA 72 bp AAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTaGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCT +
Preference number: 3 (lower is better)
Translates to: KQHSVLCWIPAG*VVKGFVLSLAA
Trigger: AGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
3UTR TCA 72 bp TGGGGGTCAGTGATGGCAACTGTAGTGTATGAAGTATaGAACGATGACAAACTTGATACAAACACGGTTCCA +
Preference number: 3 (lower is better)
Translates to: WGSVMATVVYEV*NDDKLDTNTVP
Trigger: TGGAACCGTGTTTGTATCAAGTTTGTCATCGTTTCATACTTCATACACTACAGTTGCCATCACTGACCCCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTTGTGGAGCTCGCCTGTaGCTGTGCCTTCTCCCTGCG +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVICGARL*LCLLPA
Trigger: CGCAGGGAGAAGGCACAGTCACAGGCGAGCTCCACA...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTCTGGCAGAGCCCCACTaGCCAGTGCCAACGGTTCCT +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVILAEPH*PVPTVP
Trigger: AGGAACCGTTGGCACTGGCCAGTGGGGCTCTGCCAG...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTATGTACTTGAGGACCTaGGAGCGCACCAGGCGCCTC +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIMYLRT*ERTRRL
Trigger: GAGGCGCCTGGTGCGCTCTCAGGTCCTCAAGTACAT...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGAACAGGCCGGCTCCCTaGTCCAGAAGGGACCTGTGG +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVNRPAP*SRRDLW
Trigger: CCACAGGTCCCTTCTGGAGCAGGGAGCCGGCCTGTT...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTCGTCATCCCAGGCTCTaGGGCGGCCTCCTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIRHPRL*GGLLWF
Trigger: AAACCAAAGGAGGCCGCCGCAGAGCCTGGGATGACG...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCGAGCCAGCTCGGCGTTaGAGGGAGGGACGTCTCAGA +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLEPARR*REGRLR
Trigger: TCTGAGACGTCCCTCCCTGCAACGCCGAGCTGGCTC...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTTCCATGCTTGGCCAATaGAGCTGGGTCTACCCCACG +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVISMLGQ*SWVYPT
Trigger: CGTGGGGTAGACCCAGCTCCATTGGCCAAGCATGGA...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGAACAGGCCGGCTCCCTaGTCCAGAAGGGACCTGTGG +
Preference number: 4 (lower is better)
Translates to: DRQRARDTLVVQVSVIKENRPAP*SRRDLW
Trigger: CCACAGGTCCCTTCTGGAGCAGGGAGCCGGCCTGTT...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGGGACCTGTGGGAGCTaGGAGGTGACGACATGGTGT +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKGTCGS*EVTTWC
Trigger: ACACCATGTCGTCACCTCCCAGCTCCCACAGGTCCC...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAACTGTTCACACCAGTCTaGCAGAGCCCCACTGGCCAG +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKLFTPV*QSPTGQ
Trigger: CTGGCCAGTGGGGCTCTGCCAGACTGGTGTGAACAG...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCCCATTAAACCAGGCTaGGGGTTTGGGCTTAGGGGG +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVPIKPG*GFGLRG
Trigger: CCCCCTAAGCCCAAACCCCCAGCCTGGTTTAATGGG...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTCATACGGTAAGAGTTTaGGCCACCAGCATCCCAGGT +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIHTVRV*ATSIPG
Trigger: ACCTGGGATGCTGGTGGCTCAAACTCTTACCGTATG...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTGAGAGCCAAGCGAGGTaGCGGAGTACATTCAACTTC +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIESQAR*RSTFNF
Trigger: GAAGTTGAATGTACTCCGTCACCTCGCTTGGCTCTC...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCGGGCTCCTGTGGTACTaGGACCTGGTTTGCATGCTG +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLGLLWY*DLVCML
Trigger: CAGCATGCAAACCAGGTCGCAGTACCACAGGAGCCC...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTACTCAATTTGGAATCTaGAGCAGCAGAGGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVITQFGI*SSRGGS
Trigger: GGAGCCCCCTCTGCTGCTGCAGATTCCAAATTGAGT...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTCTACAGTCAGTTTCGTaGGTCCCGGTGCTGACAGTA +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVILQSVS*VPVLTV
Trigger: TACTGTCAGCACCGGGACCCACGAAACTGACTGTAG...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGCTGTTCACACCAGTCTaGCAGAGCCCCACTGGCCAG +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQLFTPV*QSPTGQ
Trigger: CTGGCCAGTGGGGCTCTGCCAGACTGGTGTGAACAG...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGCCCCTGACTCACGCGTaGAGATCAGTTCCAGCACCT +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGPLTHA*RSVPAP
Trigger: AGGTGCTGGAACTGATCTGCACGCGTGAGTCAGGGG...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAAGTACCACCAGCCGCTaGCATTCGAGACAACAGCTC +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKSTTSR*HSRQQL
Trigger: GAGCTGTTGTCTCGAATGGCAGCGGCTGGTGGTACT...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTGTAGATGGCTTTACTTaGCCCCGGGCTCTTTGTAAC +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIVDGFT*PRALCN
Trigger: GTTACAAAGAGCCCGGGGCCAAGTAAAGCCATCTAC...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTGAGTTCGCTCCACAGTaGCTTCCCGCCTGTTCTGTA +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVEFAPQ*LPACSV
Trigger: TACAGAACAGGCGGGAAGCCACTGTGGAGCGAACTC...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAATTCTACCATTTCCTaGGTTCCAAACGCAGAGGCC +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVINSTIS*VPNAEA
Trigger: GGCCTCTGCGTTTGGAACTCAGGAAATGGTAGAATT...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTACCCTGGTGCAAGCTTaGGGTCAAATTTTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVITLVQA*GQIFLL
Trigger: CAGAAGGAAAATTTGACCTCAAGCTTGCACCAGGGT...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGCCCAAGTCAGTCCTCTaGAACTCAGCCGCCACAAGA +
Preference number: 4 (lower is better)
Translates to: DRQRARDTLVVQVSVIKEPKSVL*NSAATR
Trigger: TCTTGTGGCGGCTGAGTTTCAGAGGACTGACTTGGG...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTTGTGAACAGTCCACATaGCCGCTGTACATAGTATCC +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVICEQST*PLYIVS
Trigger: GGATACTATGTACAGCGGTCATGTGGACTGTTCACA...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTGCAAGCGCTCTCTCATaGTCTCCTCAGAAGAATACT +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIASALS*SPQKNT
Trigger: AGTATTCTTCTGAGGAGATCATGAGAGAGCGCTTGC...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGTCCAGGGCTATTAGCTaGATGTCCCTTTCATCTCCC +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVSRAIS*MSLSSP
Trigger: GGGAGATGAAAGGGACATGCAGCTAATAGCCCTGGA...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGAGTACCACCAGCCGCTaGCATTCGAGACAACAGCTC +
Preference number: 4 (lower is better)
Translates to: DRQRARDTLVVQVSVIKESTTSR*HSRQQL
Trigger: GAGCTGTTGTCTCGAATGGCAGCGGCTGGTGGTACT...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAATACAGTCTATAAGCTaGCGATGGGAGCGCTCCCCA +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKIQSIS*RWERSP
Trigger: TGGGGAGCGCTCCCATCGGCAGCTTATAGACTGTAT...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTCGACAGTCTGTTACTTaGCGAAGAGCTAAGGGGTCG +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVRQSVT*RRAKGS
Trigger: CGACCCCTTAGCTCTTCGGCAAGTAACAGACTGTCG...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAGTCCGTGCTATGTTTaGCACTCTCCTGACAAAGCT +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVISPCYV*HSPDKA
Trigger: AGCTTTGTCAGGAGAGTGGCAAACATAGCACGGACT...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAATCTATAAGCTGCCGATaGGAGCGCTCCCCAGAACTA +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKSISCR*ERSPEL
Trigger: TAGTTCTGGGGAGCGCTCCCATCGGCAGCTTATAGA...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTCTACAGTCAGTTTCGTaGGTCCCGGTGCTGACAGTA +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVLQSVS*VPVLTV
Trigger: TACTGTCAGCACCGGGACCCACGAAACTGACTGTAG...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGAGTGCGTCTGTCCACTaGCGTTCTTCCCCATCTGCT +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGSASVH*RSSPSA
Trigger: AGCAGATGGGGAAGAACGCCAGTGGACAGACGCACT...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTCAATCCAGCCATTGTaGAGCTCGCCTGTGACTGTG +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLSIQPL*SSPVTV
Trigger: CACAGTCACAGGCGAGCTCCACAATGGCTGGATTGA...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGATCAGGGTCGTACCCTaGTGCAAGCTTGAGGTCAAA +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVIRVVP*CKLEVK
Trigger: TTTGACCTCAAGCTTGCACCAGGGTACGACCCTGAT...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGGCCTCTGCAAAGCGTTaGGAGGAGACTTACAATTGT +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVASAKR*EETYNC
Trigger: ACAATTGTAAGTCTCCTCTCAACGCTTTGCAGAGGC...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTGTTGTGGGCAAATTGTaGCCAACGTCAGAATCACAA +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIVVGKL*PTSESQ
Trigger: TTGTGATTCTGACGTTGGTCACAATTTGCCCACAAC...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGACCAGTCTCTCCAATaGTACGGTTTACCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKDQSLQ*YGLPCC
Trigger: GCAGCAAGGTAAACCGTATCATTGGAGAGACTGGTC...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGCATACGGTAAGAGTTTaGGCCACCAGCATCCCAGGT +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGHTVRV*ATSIPG
Trigger: ACCTGGGATGCTGGTGGCTCAAACTCTTACCGTATG...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGTTGCCTGCTTTAGCCTaGGGCTGCTCTTTTGTCAAA +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVLPALA*GCSFVK
Trigger: TTTGACAAAAGAGCAGCCTCAGGCTAAAGCAGGCAA...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCAGCCTGATGGATTCCTaGGCACGAGTTCCTGTAACT +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLSLMDS*ARVPVT
Trigger: AGTTACAGGAACTCGTGCTCAGGAATCCATCAGGCT...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGTGCTGCCCAGGATGGTaGCTGATTTCCACAAAGAAT +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVCCPGW*LISTKN
Trigger: ATTCTTTGTGGAAATCAGTCACCATCCTGGGCAGCA...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGTCTCCCTGTCCCATCTaGAGCCATTCCAGCAACGTA +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGSPCPI*SHSSNV
Trigger: TACGTTGCTGGAATGGCTGCAGATGGGACAGGGAGA...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTCCTGAGGCTCCATTTTaGCACAGAGTCTCGATACCA +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVPEAPF*HRVSIP
Trigger: TGGTATCGAGACTCTGTGGCAAAATGGAGCCTCAGG...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGCTAGTGGAGAGCCTCTaGAAAGCGTTGAGAGGAGAC +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQLVESL*KALRGD
Trigger: GTCTCCTCTCAACGCTTTGCAGAGGCTCTCCACTAG...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAGATCCCTTATGATCTaGAAAGCTAGCAAGTGGCCA +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIRSLMI*KASKWP
Trigger: TGGCCACTTGCTAGCTTTGCAGATCATAAGGGATCT...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGAGGGTCGTACCCTGGTaGAAGCTTGAGGTCAAATTT +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVRVVPW*KLEVKF
Trigger: AAATTTGACCTCAAGCTTGCACCAGGGTACGACCCT...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTCGCTACACACAGAGCTaGTGCTCCCTTTTCTACTTG +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVRYTQS*CSLFYL
Trigger: CAAGTAGAAAAGGGAGCAGCAGCTCTGTGTGTAGCG...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGCTGTTAGGGTGCTGGTaGTTGCACTGGAAGATGACC +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQLLGCW*LHWKMT
Trigger: GGTCATCTTCCAGTGCAAGCACCAGCACCCTAACAG...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGAGTCCGTGCTATGTTTaGCACTCTCCTGACAAAGCT +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVSPCYV*HSPDKA
Trigger: AGCTTTGTCAGGAGAGTGGCAAACATAGCACGGACT...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTCAGCCAGTGGTAAACTaGAGGAATGCTTTCCTTTCA +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIQPVVN*RNAFLS
Trigger: TGAAAGGAAAGCATTCCTGCAGTTTACCACTGGCTG...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTATTGACTTCAAAGGCTaGTCCTGTGTCAATCGCATC +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIIDFKG*SCVNRI
Trigger: GATGCGATTGACACAGGAGCAGCCTTTGAAGTCAAT...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAACCAGGTAGTATGTTATaGCACGGGCTGTCACCTCTA +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKPGSML*HGLSPL
Trigger: TAGAGGTGACAGCCCGTGCCATAACATACTACCTGG...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGTAGATGGCTTTACTTaGCCCCGGGCTCTTTGTAAC +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKVDGFT*PRALCN
Trigger: GTTACAAAGAGCCCGGGGCCAAGTAAAGCCATCTAC...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTTGCTGGTGCTTGCACTaGAAGATGACCCTACTTCTG +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVCWCLH*KMTLLL
Trigger: CAGAAGTAGGGTCATCTTCCAGTGCAAGCACCAGCA...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTCCAGTTAATTTCCAGTaGCGCAGGAAAGCGGCATCT +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVPVNFQ*RRKAAS
Trigger: AGATGCCGCTTTCCTGCGCCACTGGAAATTAACTGG...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGCTGGCAGAGCCCCACTaGCCAGTGCCAACGGTTCCT +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKLAEPH*PVPTVP
Trigger: AGGAACCGTTGGCACTGGCCAGTGGGGCTCTGCCAG...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGCTCATCACTGTCCTGTaGGAATGGCGCTGTGAACAG +
Preference number: 4 (lower is better)
Translates to: DRQRARDTLVVQVSVIKELITVL*EWRCEQ
Trigger: CTGTTCACAGCGCCATTCCCACAGGACAGTGATGAG...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCACTGGCTTTCCTTATTaGAGGCAGCATAGTGTGCTG +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLTGFPY*RQHSVL
Trigger: CAGCACACTATGCTGCCTTCAATAAGGAAAGCCAGT...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGTTCCTTCTGATGATGTaGCGACTACGAGTCCATAAG +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVFLLMM*RLRVHK
Trigger: CTTATGGACTCGTAGTCGTCACATCATCAGAAGGAA...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAATGTACTTGAGGACCTaGGAGCGCACCAGGCGCCTC +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRMYLRT*ERTRRL
Trigger: GAGGCGCCTGGTGCGCTCTCAGGTCCTCAAGTACAT...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGGTCGAAGCCAAGCTaGTGTCGCTGCTACTGGCCA +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFWSKPS*CRCYWP
Trigger: TGGCCAGTAGCAGCGACATCAGCTTGGCTTCGACCA...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAAATGCAGTACAGGTaGAATAAAGCTGCCTCGTCT +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVQMQYR*NKAASS
Trigger: AGACGAGGCAGCTTTATTTCACCTGTACTGCATTTG...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGTGAACAGTCCACATaGCCGCTGTACATAGTATCC +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLCEQST*PLYIVS
Trigger: GGATACTATGTACAGCGGTCATGTGGACTGTTCACA...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTGTAGAAGCTTCCGACTaGCTTTCAGTACAGTGCAAG +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVVEASD*LSVQCK
Trigger: CTTGCACTGTACTGAAAGTCAGTCGGAAGCTTCTAC...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGCTGCCCAGGATGGTaGCTGATTTCCACAAAGAAT +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLCCPGW*LISTKN
Trigger: ATTCTTTGTGGAAATCAGTCACCATCCTGGGCAGCA...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGTCCTCAGTTAATCCATaGTTGGCCAATGGAGCTGGG +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGSSVNP*LANGAG
Trigger: CCCAGCTCCATTGGCCAAGCATGGATTAACTGAGGA...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTTCCATGATTGCGTTGTaGCTGAAACAGTGGATGAAA +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVISMIAL*LKQWMK
Trigger: TTTCATCCACTGTTTCAGGCACAACGCAATCATGGA...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATCATAGGGGCCCCGGCTaGCAACAGAGAGCTCACCGA +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHHRGPG*QQRAHR
Trigger: TCGGTGAGCTCTCTGTTGGCAGCCGGGGCCCCTATG...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGAGAGCCAGCTCGGCGTTaGAGGGAGGGACGTCTCAGA +
Preference number: 4 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGEPARR*REGRLR
Trigger: TCTGAGACGTCCCTCCCTGCAACGCCGAGCTGGCTC...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGCGTCATCCCAGGCTCTaGGGCGGCCTCCTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKRHPRL*GGLLWF
Trigger: AAACCAAAGGAGGCCGCCGCAGAGCCTGGGATGACG...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAGGTACTGTTCCACATaGTCTATAGACCAGCAACCC +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVRYCST*SIDQQP
Trigger: GGGTTGCTGGTCTATAGAGCATGTGGAACAGTACCT...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAAATTTTGCAGAGAGCTaGCAGGAAAGTACGAGGTGG +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKNFAES*QESTRW
Trigger: CCACCTCGTACTTTCCTGCCAGCTCTCTGCAAAATT...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCCAGTTAATCCATGCTTaGCCAATGGAGCTGGGTCTA +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLQLIHA*PMELGL
Trigger: TAGACCCAGCTCCATTGGCCAAGCATGGATTAACTG...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTCAGAGGGGGCTCCTGTaGTACTGCGACCTGGTTTGC +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELQRGLL*YCDLVC
Trigger: GCAAACCAGGTCGCAGTACCACAGGAGCCCCCTCTG...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTCCTGGTTACTCAATTTaGAATCTGCAGCAGCAGAGG +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVPGYSI*NLQQQR
Trigger: CCTCTGCTGCTGCAGATTCCAAATTGAGTAACCAGG...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGGGTCAACCAGACGCATaGTATCAAGCACACATCTTT +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVGQPDA*YQAHIF
Trigger: AAAGATGTGTGCTTGATACCATGCGTCTGGTTGACC...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAATGAGGAGGACCTTTaGCCTCTATTAACATCAGCA +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVINEEDL*PLLTSA
Trigger: TGCTGATGTTAATAGAGGCCAAAGGTCCTCCTCATT...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTTTTCCACTAGTGTTGTaGGCAAATTGTGACCAACGT +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIFPLVL*ANCDQR
Trigger: ACGTTGGTCACAATTTGCCCACAACACTAGTGGAAA...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGTGCAAAGCTAGCAAGTaGCCATCATCATCATCCTCT +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVCKASK*PSSSSS
Trigger: AGAGGATGATGATGATGGCCACTTGCTAGCTTTGCA...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGTCTGGAGGTTATACGTaGATCCTGGTGTGTCATACA +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVSGGYT*ILVCHT
Trigger: TGTATGACACACCAGGATCCACGTATAACCTCCAGA...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGTGGATGAAACAGGTTTaGGTGATGCCACTGTATCAG +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVWMKQV*VMPLYQ
Trigger: CTGATACAGTGGCATCACCCAAACCTGTTTCATCCA...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTGGGACCTGTGGGAGCTaGGAGGTGACGACATGGTGT +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELGTCGS*EVTTWC
Trigger: ACACCATGTCGTCACCTCCCAGCTCCCACAGGTCCC...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCCTGTACATAGTATCCTaGAGGCTTCAATCCACCTCC +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLLYIVS*RLQSTS
Trigger: GGAGGTGGATTGAAGCCTCCAGGATACTATGTACAG...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTCTGTACATAGTATCCTaGAGGCTTCAATCCACCTCC +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVLYIVS*RLQSTS
Trigger: GGAGGTGGATTGAAGCCTCCAGGATACTATGTACAG...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGCTCATCTTCCCCACTTaGCTTGAGATCCACAGCTGT +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQLIFPT*LEIHSC
Trigger: ACAGCTGTGGATCTCAAGCCAAGTGGGGAAGATGAG...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCCACAAAGAATCATCTaGACTTCCTCATGGCTGAAG +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVPQRII*TSSWLK
Trigger: CTTCAGCCATGAGGAAGTCCAGATGATTCTTTGTGG...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGACTCAAAGACTGCCCCTaGCTCACGCGTGCAGATCAG +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRLKDCP*LTRADQ
Trigger: CTGATCTGCACGCGTGAGTCAGGGGCAGTCTTTGAG...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGTCTAAAGAGGAATCCTaGGGCTCCATTTTGCCACAG +
Preference number: 4 (lower is better)
Translates to: DRQRARDTLVVQVSVIKESKEES*GSILPQ
Trigger: CTGTGGCAAAATGGAGCCTCAGGATTCCTCTTTAGA...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGCAAGGACAGTTGCAGTaGTTTCCACTAGTGTTGTGG +
Preference number: 4 (lower is better)
Translates to: DRQRARDTLVVQVSVIKEQGQLQ*FPLVLW
Trigger: CCACAACACTAGTGGAAATCACTGCAACTGTCCTTG...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGATGGAGTTCCCAAGATaGCTCCAGCTGAGTTGCTAT +
Preference number: 4 (lower is better)
Translates to: DRQRARDTLVVQVSVIKEMEFPR*LQLSCY
Trigger: ATAGCAACTCAGCTGGAGTCATCTTGGGAACTCCAT...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTTGACCCTGGTTCATTaGGACTGCAGTCATCAACAT +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLLTLVH*DCSHQH
Trigger: ATGTTGATGACTGCAGTCTCAATGAACCAGGGTCAA...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGATGGTCGAAGCCAAGCTaGTGTCGCTGCTACTGGCCA +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRWSKPS*CRCYWP
Trigger: TGGCCAGTAGCAGCGACATCAGCTTGGCTTCGACCA...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTGACGTTTTCAGCAGATaGAAGAACAACAATTGGTTC +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIDVFSR*KNNNWF
Trigger: GAACCAATTGTTGTTCTTTCATCTGCTGAAAACGTC...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGGACCCTACTTCTGTTTaGGGGACGTTTTCAGCAGAT +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGDPTSV*GTFSAD
Trigger: ATCTGCTGAAAACGTCCCTCAAACAGAAGTAGGGTC...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGGCTAGATGTCTCTCTTaGGGACAGGTTAGGTACACT +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQARCLS*GQVRYT
Trigger: AGTGTACCTAACCTGTCCTCAAGAGAGACATCTAGC...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGGTAGAAGCTTCCGACTaGCTTTCAGTACAGTGCAAG +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQVEASD*LSVQCK
Trigger: CTTGCACTGTACTGAAAGTCAGTCGGAAGCTTCTAC...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGACATCAAAAGCAGCATaGATAGCTGCTCCAGGGCTA +
Preference number: 4 (lower is better)
Translates to: DRQRARDTLVVQVSVIKETSKAA*IAAPGL
Trigger: TAGCCCTGGAGCAGCTATGCATGCTGCTTTTGATGT...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTGGGCTCCTGTGGTACTaGGACCTGGTTTGCATGCTG +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELGLLWY*DLVCML
Trigger: CAGCATGCAAACCAGGTCGCAGTACCACAGGAGCCC...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGTCCGGATTTGCACCATaGCGTAACAGAGTCTTTGCT +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGSGFAP*RNRVFA
Trigger: AGCAAAGACTCTGTTACGGCATGGTGCAAATCCGGA...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGGTGCTGAAATGTCTGTaGAAACACTGGCAGCAACCT +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQVLKCL*KHWQQP
Trigger: AGGTTGCTGCCAGTGTTTGCACAGACATTTCAGCAC...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCGTTCTTCCCCATCTaGTTCAGCCTGACATGCCGC +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKAFFPI*FSLTCR
Trigger: GCGGCATGTCAGGCTGAAGCAGATGGGGAAGAACGC...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAGCGTTCTTCCCCATCTaGTTCAGCCTGACATGCCGC +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRAFFPI*FSLTCR
Trigger: GCGGCATGTCAGGCTGAAGCAGATGGGGAAGAACGC...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATCTTCTCCCTGCGGGCTaGCATCCTGATCTCGCCACT +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHLLPAG*HPDLAT
Trigger: AGTGGCGAGATCAGGATGGCAGCCCGCAGGGAGAAG...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGGTCAAATTTTCCTTCTaGGCCCATACGGTAAGAGTT +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVVKFSF*AHTVRV
Trigger: AACTCTTACCGTATGGGCGCAGAAGGAAAATTTGAC...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGAAGCTGCTCCATGATTaGGTTGTGCCTGAAACAGTG +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQKLLHD*VVPETV
Trigger: CACTGTTTCAGGCACAACGCAATCATGGAGCAGCTT...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTTGTTTTTCACCAAGCTaGTCCATGATTGCGTTGTGC +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVCFSPS*SMIALC
Trigger: GCACAACGCAATCATGGAGCAGCTTGGTGAAAAACA...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGACAGAGGGGGCTCCTGTaGTACTGCGACCTGGTTTGC +
Preference number: 4 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGQRGLL*YCDLVC
Trigger: GCAAACCAGGTCGCAGTACCACAGGAGCCCCCTCTG...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCGGTCAACCAGACGCATaGTATCAAGCACACATCTTT +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLGQPDA*YQAHIF
Trigger: AAAGATGTGTGCTTGATACCATGCGTCTGGTTGACC...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAACACATCCAATCACCTaGAGACTGGAGAATTGCTAC +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKTHPIT*RLENCY
Trigger: GTAGCAATTCTCCAGTCTCCAGGTGATTGGATGTGT...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAATGCAAAGCTAGCAAGTaGCCATCATCATCATCCTCT +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKCKASK*PSSSSS
Trigger: AGAGGATGATGATGATGGCCACTTGCTAGCTTTGCA...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAATTGTGCCTGAAACAGTaGATGAAACAGGTTTGGGTG +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKLCLKQ*MKQVWV
Trigger: CACCCAAACCTGTTTCATCCACTGTTTCAGGCACAA...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGAGCAGACGTCTTGTCTaGACAGTTGTTTTTCACCAA +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVSRRLV*TVVFHQ
Trigger: TTGGTGAAAAACAACTGTCCAGACAAGACGTCTGCT...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCCCGCTGTTAGGGTGCTaGTGCTTGCACTGGAAGATG +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFPLLGC*CLHWKM
Trigger: CATCTTCCAGTGCAAGCACCAGCACCCTAACAGCGG...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCGGAAAGGACACTTGCTaGTTAACTGTTCACACCAGT +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLGKDTC*LTVHTS
Trigger: ACTGGTGTGAACAGTTAACCAGCAAGTGTCCTTTCC...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGACTGAGAGGGAGTCATaGCCTTCTTCTGTAGAAGCT +
Preference number: 4 (lower is better)
Translates to: DRQRARDTLVVQVSVIKETERES*PSSVEA
Trigger: AGCTTCTACAGAAGAAGGCCATGACTCCCTCTCAGT...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGACCCATTAAACCAGGCTaGGGGTTTGGGCTTAGGGGG +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRPIKPG*GFGLRG
Trigger: CCCCCTAAGCCCAAACCCCCAGCCTGGTTTAATGGG...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGTAATGTATCTTTATaGACGAGGTGTCCGCTGTCA +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLCNVSL*TRCPLS
Trigger: TGACAGCGGACACCTCGTTCATAAAGATACATTACA...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCCAAGATGACTCCAGCTaGGTTGCTATATTTCTGAGT +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLQDDSS*VAIFLS
Trigger: ACTCAGAAATATAGCAACTCAGCTGGAGTCATCTTG...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAACACATTTCATACGGTaGGATCGTGTTCTCATCCTT +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKTHFIR*DRVLIL
Trigger: AAGGATGAGAACACGATCTCACCGTATGAAATGTGT...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGTTCCTTCTGATGATGTaGCGACTACGAGTCCATAAG +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQFLLMM*RLRVHK
Trigger: CTTATGGACTCGTAGTCGTCACATCATCAGAAGGAA...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTTGTGGAGCTCGCCTGTaGCTGTGCCTTCTCCCTGCG +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRCGARL*LCLLPA
Trigger: CGCAGGGAGAAGGCACAGTCACAGGCGAGCTCCACA...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTGCTCCCTTTTCTACTTaGGGAGCCTGCAGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELAPFST*GACSSR
Trigger: TCTGCTGCTGCAGGCTCCTCAAGTAGAAAAGGGAGC...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCAAATTAGGGAAACTCTaGGCACCCATAAGTGGAGAA +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLKLGKL*APISGE
Trigger: TTCTCCACTTATGGGTGCTCAGAGTTTCCCTAATTT...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAACATCAAGGAAAATTTTaGAGAGAGCTGGCAGGAAAG +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKHQGKF*RELAGK
Trigger: CTTTCCTGCCAGCTCTCTGCAAAATTTTCCTTGATG...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTCATCAAGGAAAATTTTaGAGAGAGCTGGCAGGAAAG +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVHQGKF*RELAGK
Trigger: CTTTCCTGCCAGCTCTCTGCAAAATTTTCCTTGATG...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGACTTCTCCCTGCGGGCTaGCATCCTGATCTCGCCACT +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRLLPAG*HPDLAT
Trigger: AGTGGCGAGATCAGGATGGCAGCCCGCAGGGAGAAG...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGTGTTTTTCACCAAGCTaGTCCATGATTGCGTTGTGC +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQCFSPS*SMIALC
Trigger: GCACAACGCAATCATGGAGCAGCTTGGTGAAAAACA...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTACATAGGGGCCCCGGCTaGCAACAGAGAGCTCACCGA +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALHRGPG*QQRAHR
Trigger: TCGGTGAGCTCTCTGTTGGCAGCCGGGGCCCCTATG...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGAACGGTTCCTCAATCTaGTGCAAAATTTTTGTGGTG +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVNGSSI*CKIFVV
Trigger: CACCACAAAAATTTTGCAGCAGATTGAGGAACCGTT...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAATCTGGACGCACCAAATaGAGTACAGGTGAAATAAAG +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKSGRTK*STGEIK
Trigger: CTTTATTTCACCTGTACTGCATTTGGTGCGTCCAGA...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGCAGCCAGTGGTAAACTaGAGGAATGCTTTCCTTTCA +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQQPVVN*RNAFLS
Trigger: TGAAAGGAAAGCATTCCTGCAGTTTACCACTGGCTG...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGATGCAACTGCTGGTCTaGTATAACTCTCATCATCTT +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVMQLLV*YNSHHL
Trigger: AAGATGATGAGAGTTATAGCAGACCAGCAGTTGCAT...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTCTATAAGCTGCCGATaGGAGCGCTCCCCAGAACTA +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFSISCR*ERSPEL
Trigger: TAGTTCTGGGGAGCGCTCCCATCGGCAGCTTATAGA...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAACAATCACCTGGAGACTaGAGAATTGCTACTACTTCA +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKQSPGD*RIATTS
Trigger: TGAAGTAGTAGCAATTCTCCAGTCTCCAGGTGATTG...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAACATTGTCTATTCGTATaGAGTTCCCAAGATGACTCC +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKHCLFV*SSQDDS
Trigger: GGAGTCATCTTGGGAACTCCATACGAATAGACAATG...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCACAGTAAGAAGTGCCTaGACTAAACCACTACTACAC +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLTVRSA*TKPLLH
Trigger: GTGTAGTAGTGGTTTAGTCCAGGCACTTCTTACTGT...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCGTTATACGTGGATCCTaGTGTGTCATACAAATGGAG +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLVIRGS*CVIQME
Trigger: CTCCATTTGTATGACACACCAGGATCCACGTATAAC...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAACTGCAGTCATCAACATaGGTATACAAAGAAGTCCAG +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKLQSST*VYKEVQ
Trigger: CTGGACTTCTTTGTATACCCATGTTGATGACTGCAG...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCCTGCAGTCATCAACATaGGTATACAAAGAAGTCCAG +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLLQSST*VYKEVQ
Trigger: CTGGACTTCTTTGTATACCCATGTTGATGACTGCAG...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCAGCAGACGTCTTGTCTaGACAGTTGTTTTTCACCAA +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLSRRLV*TVVFHQ
Trigger: TTGGTGAAAAACAACTGTCCAGACAAGACGTCTGCT...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGCAGCTAAGAGAGTACTaGCACGGCAGCTGTCGAGGA +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKQLREY*HGSCRG
Trigger: TCCTCGACAGCTGCCGTGCCAGTACTCTCTTAGCTG...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGTCTGAAATTGGTAAGTaGCAGTTCAACTTCCCGCGT +
Preference number: 4 (lower is better)
Translates to: DRQRARDTLVVQVSVIKESEIGK*QFNFPR
Trigger: ACGCGGGAAGTTGAACTGCCACTTACCAATTTCAGA...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAGAGTTCGCTCCACAGTaGCTTCCCGCCTGTTCTGTA +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISREFAPQ*LPACSV
Trigger: TACAGAACAGGCGGGAAGCCACTGTGGAGCGAACTC...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCACTGTCCTGTGGGAATaGCGCTGTGAACAGTCCACA +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFTVLWE*RCEQST
Trigger: TGTGGACTGTTCACAGCGCCATTCCCACAGGACAGT...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGCAAGATGACTCCAGCTaGGTTGCTATATTTCTGAGT +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGQDDSS*VAIFLS
Trigger: ACTCAGAAATATAGCAACTCAGCTGGAGTCATCTTG...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGATGCGGGCTGCCATCCTaGTCTCGCCACTTCCAATCA +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRCGLPS*SRHFQS
Trigger: TGATTGGAAGTGGCGAGATCAGGATGGCAGCCCGCA...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTCACCAGCATCCCAGGTaGCATCAATCCAGCCATTGT +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELHQHPR*HQSSHC
Trigger: ACAATGGCTGGATTGATGTCACCTGGGATGCTGGTG...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGAGCTCCCTTTTCTACTTaGGGAGCCTGCAGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGAPFST*GACSSR
Trigger: TCTGCTGCTGCAGGCTCCTCAAGTAGAAAAGGGAGC...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCGCTTGCACTGGAAGATaGCCCTACTTCTGTTTGAGG +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFACTGR*PYFCLR
Trigger: CCTCAAACAGAAGTAGGGTCATCTTCCAGTGCAAGC...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCGCTAAGGGGTCGTTGTaGAGCTGCTTCCTTATTGGT +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFAKGSL*SCFLIG
Trigger: ACCAATAAGGAAGCAGCTTCACAACGACCCCTTAGC...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAATATTCTTGGTCCTCCTaGTTGTCATCTTCATTCTCA +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKYSWSS*LSSSFS
Trigger: TGAGAATGAAGATGACAATCAGGAGGACCAAGAATA...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAGAGAGCCAAGCGAGGTaGCGGAGTACATTCAACTTC +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRESQAR*RSTFNF
Trigger: GAAGTTGAATGTACTCCGTCACCTCGCTTGGCTCTC...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCAGAATATCACTACTTTaGAGACTAGAAATAGCCCCC +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLRISLL*RLEIAP
Trigger: GGGGGCTATTTCTAGTCTTCAAAGTAGTGATATTCT...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAATGGAAGAGTTTTGTaGTCCTTTCAAGCTCATCAC +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVNGRVL*SFQAHH
Trigger: GTGATGAGCTTGAAAGGATCACAAAACTCTTCCATT...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTCCAGGGCTATTAGCTaGATGTCCCTTTCATCTCCC +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFSRAIS*MSLSSP
Trigger: GGGAGATGAAAGGGACATGCAGCTAATAGCCCTGGA...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCCCTCCGGGTGCATTCTaGAGAAACATCCAGGTAGTA +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFPPGAF*RNIQVV
Trigger: TACTACCTGGATGTTTCTGCAGAATGCACCCGGAGG...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCCCTGAGGCTCCATTTTaGCACAGAGTCTCGATACCA +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFPEAPF*HRVSIP
Trigger: TGGTATCGAGACTCTGTGGCAAAATGGAGCCTCAGG...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAACTCAATTTGGAATCTaGAGCAGCAGAGGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRTQFGI*SSRGGS
Trigger: GGAGCCCCCTCTGCTGCTGCAGATTCCAAATTGAGT...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGATACAGTCTATAAGCTaGCGATGGGAGCGCTCCCCA +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKIQSIS*RWERSP
Trigger: TGGGGAGCGCTCCCATCGGCAGCTTATAGACTGTAT...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAACCCAGAGATGTTTCTaGAGTAAACGAATGTTTCGT +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKTQRCF*SKRMFR
Trigger: ACGAAACATTCGTTTACTGCAGAAACATCTCTGGGT...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGATGCAACTGCTGGTCTaGTCTCATCATCTTCACTTT +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQMQLLV*SHHLHF
Trigger: AAAGTGAAGATGATGAGAGCAGACCAGCAGTTGCAT...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042052.9
CDS-3UTR GCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGTCCATGATTGCGTTGTaGCTGAAACAGTGGATGAAA +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGSMIAL*LKQWMK
Trigger: TTTCATCCACTGTTTCAGGCACAACGCAATCATGGA...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGACTGTTAGGGTGCTGGTaGTTGCACTGGAAGATGACC +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRLLGCW*LHWKMT
Trigger: GGTCATCTTCCAGTGCAAGCACCAGCACCCTAACAG...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTCCAGACTTTGTTCCATaGTCACAAAAATCCTTATAT +
Preference number: 4 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIPDFVP*SQKSLY
Trigger: ATATAAGGATTTTTGTGAGCATGGAACAAAGTCTGG...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTTTCATCTGAGGACATaGCACATAAAACCCTCACAA +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLFHLRT*HIKPSQ
Trigger: TTGTGAGGGTTTTATGTGGCATGTCCTCAGATGAAA...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGCAATCTCCGCAGTCCTaGGATTCTGCCTGTAGATCC +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKQSPQS*DSACRS
Trigger: GGATCTACAGGCAGAATCCCAGGACTGCGGAGATTG...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGTTTCCACTAGTGTTGTaGGCAAATTGTGACCAACGT +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGFPLVL*ANCDQR
Trigger: ACGTTGGTCACAATTTGCCCACAACACTAGTGGAAA...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAGACACCCAGATCTATaGCAAACCAGGCATTTTTAT +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVRHPDL*QTRHFY
Trigger: ATAAAAATGCCTGGTTTGCCATAGATCTGGGTGTCT...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCCCATCTTTGGATACCTaGAAAACCCAATTTCTCAGT +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLPSLDT*KTQFLS
Trigger: ACTGAGAAATTGGGTTTTCCAGGTATCCAAAGATGG...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAAGTTCTGTCCATCTTTaGATACCTGGAAAACCCAAT +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKSSVHL*IPGKPN
Trigger: ATTGGGTTTTCCAGGTATCCAAAGATGGACAGAACT...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGTCAATCCAGCCATTGTaGAGCTCGCCTGTGACTGTG +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKSIQPL*SSPVTV
Trigger: CACAGTCACAGGCGAGCTCCACAATGGCTGGATTGA...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCATCAGGGTCGTACCCTaGTGCAAGCTTGAGGTCAAA +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFIRVVP*CKLEVK
Trigger: TTTGACCTCAAGCTTGCACCAGGGTACGACCCTGAT...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGAAGCTGCTTCCTTATTaGTTAATTCAGATACCGAAC +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVKLLPY*LIQIPN
Trigger: GTTCGGTATCTGAATTAACCAATAAGGAAGCAGCTT...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCAGGTCAGTTGTCTGCTaGACATTGGTACGACCAGGT +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFRSVVC*TLVRPG
Trigger: ACCTGGTCGTACCAATGTCCAGCAGACAACTGACCT...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCCTAGAAATAGCCCCCTaGTTTAATCCAGACTTTGTT +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLLEIAP*FNPDFV
Trigger: AACAAAGTCTGGATTAAACCAGGGGGCTATTTCTAG...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCCTCATCTTCCCCACTTaGCTTGAGATCCACAGCTGT +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFLIFPT*LEIHSC
Trigger: ACAGCTGTGGATCTCAAGCCAAGTGGGGAAGATGAG...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTATCTGGACTTCCTCATaGCTGAAGGAACTTAATTTC +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVIWTSS*LKELNF
Trigger: GAAATTAAGTTCCTTCAGCCATGAGGAAGTCCAGAT...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCACTGGCTTTCCTTATTaGAGGCAGCATAGTGTGCTG +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFTGFPY*RQHSVL
Trigger: CAGCACACTATGCTGCCTTCAATAAGGAAAGCCAGT...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCCAAGGACAGTTGCAGTaGTTTCCACTAGTGTTGTGG +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFQGQLQ*FPLVLW
Trigger: CCACAACACTAGTGGAAATCACTGCAACTGTCCTTG...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAGACCAGTCTCTCCAATaGTACGGTTTACCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRDQSLQ*YGLPCC
Trigger: GCAGCAAGGTAAACCGTATCATTGGAGAGACTGGTC...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAATCGAACAAAAACAAATaGGGATCTGTCAAAGTCGTA +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKSNKNK*GSVKVV
Trigger: TACGACTTTGACAGATCCTCATTTGTTTTTGTTCGA...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTTGCGGGCTGCCATCCTaGTCTCGCCACTTCCAATCA +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRCGLPS*SRHFQS
Trigger: TGATTGGAAGTGGCGAGATCAGGATGGCAGCCCGCA...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTGCTAAGGGGTCGTTGTaGAGCTGCTTCCTTATTGGT +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELAKGSL*SCFLIG
Trigger: ACCAATAAGGAAGCAGCTTCACAACGACCCCTTAGC...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGTATTCTTGGTCCTCCTaGTTGTCATCTTCATTCTCA +
Preference number: 4 (lower is better)
Translates to: DRQRARDTLVVQVSVIKEYSWSS*LSSSFS
Trigger: TGAGAATGAAGATGACAATCAGGAGGACCAAGAATA...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGAGAATATCACTACTTTaGAGACTAGAAATAGCCCCC +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGRISLL*RLEIAP
Trigger: GGGGGCTATTTCTAGTCTTCAAAGTAGTGATATTCT...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGGTGGAAAAGTAAACTaGGGCTGCTCATCGCCATCT +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKGGKVN*GCSSPS
Trigger: AGATGGCGATGAGCAGCCTCAGTTTACTTTTCCACC...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTAGCCTGATGGATTCCTaGGCACGAGTTCCTGTAACT +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELSLMDS*ARVPVT
Trigger: AGTTACAGGAACTCGTGCTCAGGAATCCATCAGGCT...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTCCTCCGGGTGCATTCTaGAGAAACATCCAGGTAGTA +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELPPGAF*RNIQVV
Trigger: TACTACCTGGATGTTTCTGCAGAATGCACCCGGAGG...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTTCCTCAGTTAATCCATaGTTGGCCAATGGAGCTGGG +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELSSVNP*LANGAG
Trigger: CCCAGCTCCATTGGCCAAGCATGGATTAACTGAGGA...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGATAGTTCGTACCTTTTaGTTTGTTTTCTCCAACTTG +
Preference number: 4 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVIVRTF*FVFSNL
Trigger: CAAGTTGGAGAAAACAAAGCAAAAGGTACGAACTAT...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGTCTAAGATTAGCTTCTaGTTCTTTAGCTGCTTTCCC +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGSKISF*FFSCFP
Trigger: GGGAAAGCAGCTAAAGAAGCAGAAGCTAATCTTAGA...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAGCCCCTGATAACACGTaGTCCTGGAACCATGTACTT +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRAPDNT*SWNHVL
Trigger: AAGTACATGGTTCCAGGAGCACGTGTTATCAGGGGC...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTGCCCCTGATAACACGTaGTCCTGGAACCATGTACTT +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELAPDNT*SWNHVL
Trigger: AAGTACATGGTTCCAGGAGCACGTGTTATCAGGGGC...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGCGCTACACACAGAGCTaGTGCTCCCTTTTCTACTTG +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKRYTQS*CSLFYL
Trigger: CAAGTAGAAAAGGGAGCAGCAGCTCTGTGTGTAGCG...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAGGTGGCATTAGTCCGTaGTATGTTTGCCACTCTCCT +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRGGISP*YVCHSP
Trigger: AGGAGAGTGGCAAACATAGCACGGACTAATGCCACC...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGAACGGTTCCTCAATCTaGTGCAAAATTTTTGTGGTG +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQNGSSI*CKIFVV
Trigger: CACCACAAAAATTTTGCAGCAGATTGAGGAACCGTT...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGACGATCTGCGTGTATCTaGATGACATTCTCGGCCCAC +
Preference number: 4 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGRSACI*MTFSAH
Trigger: GTGGGCCGAGAATGTCATGCAGATACACGCAGATCG...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATCGATCTGCGTGTATCTaGATGACATTCTCGGCCCAC +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHRSACI*MTFSAH
Trigger: GTGGGCCGAGAATGTCATGCAGATACACGCAGATCG...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCACAATTGTCGACACCTaGTTACTCAATTTGGAATCT +
Preference number: 4 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLTIVDT*LLNLES
Trigger: AGATTCCAAATTGAGTAACCAGGTGTCGACAATTGT...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGTCAACAGCTTTAAAGTaGTCGTCATACAAGTCTCGA +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGSTALK*SSYKSR
Trigger: TCGAGACTTGTATGACGACCACTTTAAAGCTGTTGA...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGAGACACCCAGATCTATaGCAAACCAGGCATTTTTAT +
Preference number: 4 (lower is better)
Translates to: DRQRARDTLVVQVSVIKERHPDL*QTRHFY
Trigger: ATAAAAATGCCTGGTTTGCCATAGATCTGGGTGTCT...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGACAACAATTGGTTCATaGACATCAGCTCCTGAAACT +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGTTIGS*TSAPET
Trigger: AGTTTCAGGAGCTGATGTCCATGAACCAATTGTTGT...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGACAGCTAAGAGAGTACTaGCACGGCAGCTGTCGAGGA +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRQLREY*HGSCRG
Trigger: TCCTCGACAGCTGCCGTGCCAGTACTCTCTTAGCTG...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGAGGTCAGTTGTCTGCTaGACATTGGTACGACCAGGT +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKRSVVC*TLVRPG
Trigger: ACCTGGTCGTACCAATGTCCAGCAGACAACTGACCT...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGACCAGTTAATTTCCAGTaGCGCAGGAAAGCGGCATCT +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRPVNFQ*RRKAAS
Trigger: AGATGCCGCTTTCCTGCGCCACTGGAAATTAACTGG...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGTGTCCTGAATACATTTaGCCAAGAAAATCCCAAGGA +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQCPEYI*PRKSQG
Trigger: TCCTTGGGATTTTCTTGGCCAAATGTATTCAGGACA...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGATCTGGACTTCCTCATaGCTGAAGGAACTTAATTTC +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQIWTSS*LKELNF
Trigger: GAAATTAAGTTCCTTCAGCCATGAGGAAGTCCAGAT...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTACAGGTGTTGACCGATaGATAGCTCGCATCAGTAGC +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELTGVDR*IARISS
Trigger: GCTACTGATGCGAGCTATCCATCGGTCAACACCTGT...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTTGACCCTGGTTCATTaGGACTGCAGTCATCAACAT +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFLTLVH*DCSHQH
Trigger: ATGTTGATGACTGCAGTCTCAATGAACCAGGGTCAA...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTACCCTGGTGCAAGCTTaGGGTCAAATTTTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELTLVQA*GQIFLL
Trigger: CAGAAGGAAAATTTGACCTCAAGCTTGCACCAGGGT...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCTAGATGTCTCTCTTaGGGACAGGTTAGGTACACT +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKARCLS*GQVRYT
Trigger: AGTGTACCTAACCTGTCCTCAAGAGAGACATCTAGC...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCCAAATGCAGTACAGGTaGAATAAAGCTGCCTCGTCT +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFQMQYR*NKAASS
Trigger: AGACGAGGCAGCTTTATTTCACCTGTACTGCATTTG...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGATTCAACCTCGAGAACTaGCTTCCGATCTGCGTGTAT +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRFNLEN*LPICVY
Trigger: ATACACGCAGATCGGAAGTCAGTTCTCGAGGTTGAA...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTCCCAAGTCAGTCCTCTaGAACTCAGCCGCCACAAGA +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRPKSVL*NSAATR
Trigger: TCTTGTGGCGGCTGAGTTTCAGAGGACTGACTTGGG...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCGGACTTCCTCATGGCTaGAGGAACTTAATTTCTCCA +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFGLPHG*RNLISP
Trigger: TGGAGAAATTAAGTTCCTTCAGCCATGAGGAAGTCC...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAAGCAGCATGCATAGCTaGTCCAGGGCTATTAGCTGC +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRSSMHS*SRAISC
Trigger: GCAGCTAATAGCCCTGGAGCAGCTATGCATGCTGCT...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTCTACTATCCTCCGGGTaGATTCTGCAGAAACATCCA +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELLLSSG*ILQKHP
Trigger: TGGATGTTTCTGCAGAATGCACCCGGAGGATAGTAG...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTACTGCGACCTGGTTTaGATGCTGAAGATGGTCCTG +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHYCDLV*MLKMVL
Trigger: CAGGACCATCTTCAGCATGCAAACCAGGTCGCAGTA...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGATGGAGACTGGAGAATTaGTACTACTTCACTGTGGCC +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRWRLEN*YYFTVA
Trigger: GGCCACAGTGAAGTAGTAGCAATTCTCCAGTCTCCA...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAGTTTTCTGCCTCTTTTaGCAGTCCAGCCAGTCACAA +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRVFCLF*QSSQSQ
Trigger: TTGTGACTGGCTGGACTGGCAAAAGAGGCAGAAAAC...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTATAGTTCGTACCTTTTaGTTTGTTTTCTCCAACTTG +
Preference number: 4 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVIVRTF*FVFSNL
Trigger: CAAGTTGGAGAAAACAAAGCAAAAGGTACGAACTAT...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGATTTCCGCTGTTAGGGTaGTGGTGCTTGCACTGGAAG +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRFPLLG*WCLHWK
Trigger: CTTCCAGTGCAAGCACCAGCACCCTAACAGCGGAAA...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGACGACAGTCTGTTACTTaGCGAAGAGCTAAGGGGTCG +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRRQSVT*RRAKGS
Trigger: CGACCCCTTAGCTCTTCGGCAAGTAACAGACTGTCG...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATGGTGGCATTAGTCCGTaGTATGTTTGCCACTCTCCT +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHGGISP*YVCHSP
Trigger: AGGAGAGTGGCAAACATAGCACGGACTAATGCCACC...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAATATCTGACTTCACATTaGCATTACAAGACAGTTGAA +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKYLTSH*HYKTVE
Trigger: TTCAACTGTCTTGTAATGGCAATGTGAAGTCAGATA...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGGGTTCCTCAATCTGCTaGAAAATTTTTGTGGTGATT +
Preference number: 4 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGGSSIC*KIFVVI
Trigger: AATCACCACAAAAATTTTGCAGCAGATTGAGGAACC...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTCCTGGTTACTCAATTTaGAATCTGCAGCAGCAGAGG +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELPGYSI*NLQQQR
Trigger: CCTCTGCTGCTGCAGATTCCAAATTGAGTAACCAGG...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTAGTGCGTCTGTCCACTaGCGTTCTTCCCCATCTGCT +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRSASVH*RSSPSA
Trigger: AGCAGATGGGGAAGAACGCCAGTGGACAGACGCACT...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTGCTGGTGCTTGCACTaGAAGATGACCCTACTTCTG +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHCWCLH*KMTLLL
Trigger: CAGAAGTAGGGTCATCTTCCAGTGCAAGCACCAGCA...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTCTGAAATTGGTAAGTaGCAGTTCAACTTCCCGCGT +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFSEIGK*QFNFPR
Trigger: ACGCGGGAAGTTGAACTGCCACTTACCAATTTCAGA...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAACTGTCCTGTGGGAATaGCGCTGTGAACAGTCCACA +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRTVLWE*RCEQST
Trigger: TGTGGACTGTTCACAGCGCCATTCCCACAGGACAGT...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAAAAATCCCAAGGAAATaGAAGAGTTTTGTGATCCTT +
Preference number: 4 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKKIPRK*KSFVIL
Trigger: AAGGATCACAAAACTCTTCCATTTCCTTGGGATTTT...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
46% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTCCCATCTTCATCTCTaGGATCCGGATTTGCACCAT +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHSHLHL*DPDLHH
Trigger: ATGGTGCAAATCCGGATCTCAGAGATGAAGATGGGA...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATGGCAGCATAGTGTGCTaGAATGTCTGTGCAAACACT +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHGSIVC*NVCANT
Trigger: AGTGTTTGCACAGACATTTCAGCACACTATGCTGCC...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAGTTGTGGGCAAATTGTaGCCAACGTCAGAATCACAA +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRVVGKL*PTSESQ
Trigger: TTGTGATTCTGACGTTGGTCACAATTTGCCCACAAC...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGTCATCATCATCCTCTTaGTCAAGGACAGTTGCAGTG +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKSSSSS*SRTVAV
Trigger: CACTGCAACTGTCCTTGATCAAGAGGATGATGATGA...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGAAGGACCTGCCAAAGCTaGCACTTTGCTAATTACACC +
Preference number: 4 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGRTCQS*HFANYT
Trigger: GGTGTAATTAGCAAAGTGTCAGCTTTGGCAGGTCCT...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCGCTGACAGTATAGGTTaGCTTGAAGTAGATGGCTTT +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFADSIG*LEVDGF
Trigger: AAAGCCATCTACTTCAAGTCAACCTATACTGTCAGC...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCACACATTTCATACGGTaGGATCGTGTTCTCATCCTT +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFTHFIR*DRVLIL
Trigger: AAGGATGAGAACACGATCTCACCGTATGAAATGTGT...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTACACCAGCATCCCAGGTaGCATCAATCCAGCCATTGT +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALHQHPR*HQSSHC
Trigger: ACAATGGCTGGATTGATGTCACCTGGGATGCTGGTG...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCAAATTAGGGAAACTCTaGGCACCCATAAGTGGAGAA +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFKLGKL*APISGE
Trigger: TTCTCCACTTATGGGTGCTCAGAGTTTCCCTAATTT...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGATTGCCTGCTTTAGCCTaGGGCTGCTCTTTTGTCAAA +
Preference number: 4 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGLPALA*GCSFVK
Trigger: TTTGACAAAAGAGCAGCCTCAGGCTAAAGCAGGCAA...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGTGGAAAAGTAAACTaGGGCTGCTCATCGCCATCT +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRGGKVN*GCSSPS
Trigger: AGATGGCGATGAGCAGCCTCAGTTTACTTTTCCACC...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTTCTCCCTGTCCCATCTaGAGCCATTCCAGCAACGTA +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRSPCPI*SHSSNV
Trigger: TACGTTGCTGGAATGGCTGCAGATGGGACAGGGAGA...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTCTAGTGGAGAGCCTCTaGAAAGCGTTGAGAGGAGAC +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRLVESL*KALRGD
Trigger: GTCTCCTCTCAACGCTTTGCAGAGGCTCTCCACTAG...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGATCCGGATTTGCACCATaGCGTAACAGAGTCTTTGCT +
Preference number: 4 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGSGFAP*RNRVFA
Trigger: AGCAAAGACTCTGTTACGGCATGGTGCAAATCCGGA...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGATGGAGACTGGAGAATTaGTACTACTTCACTGTGGCC +
Preference number: 4 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGWRLEN*YYFTVA
Trigger: GGCCACAGTGAAGTAGTAGCAATTCTCCAGTCTCCA...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGCCCCTCTGGGTTCATTaGATTCCTCTTCATCTTTGT +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKPLWVH*IPLHLC
Trigger: ACAAAGATGAAGAGGAATGCAATGAACCCAGAGGGG...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATGTGCTGAAATGTCTGTaGAAACACTGGCAGCAACCT +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHVLKCL*KHWQQP
Trigger: AGGTTGCTGCCAGTGTTTGCACAGACATTTCAGCAC...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTAGATCCCTTATGATCTaGAAAGCTAGCAAGTGGCCA +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELRSLMI*KASKWP
Trigger: TGGCCACTTGCTAGCTTTGCAGATCATAAGGGATCT...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTACGGTTTACCTTGCTaGAATTCCTTAGCATCTTCC +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFYGLPC*NSLASS
Trigger: GGAAGATGCTAAGGAATTGCAGCAAGGTAAACCGTA...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGAGTTTTCTGCCTCTTTTaGCAGTCCAGCCAGTCACAA +
Preference number: 4 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGVFCLF*QSSQSQ
Trigger: TTGTGACTGGCTGGACTGGCAAAAGAGGCAGAAAAC...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCGTCAAATTTTCCTTCTaGGCCCATACGGTAAGAGTT +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFVKFSF*AHTVRV
Trigger: AACTCTTACCGTATGGGCGCAGAAGGAAAATTTGAC...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGAAGGGTCGTACCCTGGTaGAAGCTTGAGGTCAAATTT +
Preference number: 4 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGRVVPW*KLEVKF
Trigger: AAATTTGACCTCAAGCTTGCACCAGGGTACGACCCT...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTATTTCCGCTGTTAGGGTaGTGGTGCTTGCACTGGAAG +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALFPLLG*WCLHWK
Trigger: CTTCCAGTGCAAGCACCAGCACCCTAACAGCGGAAA...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGTATCTGACTTCACATTaGCATTACAAGACAGTTGAA +
Preference number: 4 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQYLTSH*HYKTVE
Trigger: TTCAACTGTCTTGTAATGGCAATGTGAAGTCAGATA...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGAAATTTTGCAGAGAGCTaGCAGGAAAGTACGAGGTGG +
Preference number: 4 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGNFAES*QESTRW
Trigger: CCACCTCGTACTTTCCTGCCAGCTCTCTGCAAAATT...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTCAATCTCCGCAGTCCTaGGATTCTGCCTGTAGATCC +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRQSPQS*DSACRS
Trigger: GGATCTACAGGCAGAATCCCAGGACTGCGGAGATTG...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGTTTCTGGATCCCCTCTaGGTTCATTGCATTCCTCTT +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKFLDPL*VHCIPL
Trigger: AAGAGGAATGCAATGAACCCAGAGGGGATCCAGAAA...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCACAGTAAGAAGTGCCTaGACTAAACCACTACTACAC +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFTVRSA*TKPLLH
Trigger: GTGTAGTAGTGGTTTAGTCCAGGCACTTCTTACTGT...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTTTGTGCCTGAAACAGTaGATGAAACAGGTTTGGGTG +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELLCLKQ*MKQVWV
Trigger: CACCCAAACCTGTTTCATCCACTGTTTCAGGCACAA...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTGCGGCGGCCTCCTTTaGTTTCATACTCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHCGGLL*FHTLLL
Trigger: AAGAAGAAGAGTATGAAACCAAAGGAGGCCGCCGCA...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTCTCATCACTGTCCTGTaGGAATGGCGCTGTGAACAG +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRLITVL*EWRCEQ
Trigger: CTGTTCACAGCGCCATTCCCACAGGACAGTGATGAG...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAAATTCTACCATTTCCTaGGTTCCAAACGCAGAGGCC +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRNSTIS*VPNAEA
Trigger: GGCCTCTGCGTTTGGAACTCAGGAAATGGTAGAATT...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGATCCCATCTTCATCTCTaGGATCCGGATTTGCACCAT +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRSHLHL*DPDLHH
Trigger: ATGGTGCAAATCCGGATCTCAGAGATGAAGATGGGA...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTCATCATCATCCTCTTaGTCAAGGACAGTTGCAGTG +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHSSSSS*SRTVAV
Trigger: CACTGCAACTGTCCTTGATCAAGAGGATGATGATGA...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCCCTTCCTCTAATTATTaGCCAGTCTCTCCAATGATA +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFPSSNY*PVSPMI
Trigger: TATCATTGGAGAGACTGGTCAATAATTAGAGGAAGG...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGACCCTACTTCTGTTTaGGGGACGTTTTCAGCAGAT +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRDPTSV*GTFSAD
Trigger: ATCTGCTGAAAACGTCCCTCAAACAGAAGTAGGGTC...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGCTTGCACTGGAAGATaGCCCTACTTCTGTTTGAGG +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRACTGR*PYFCLR
Trigger: CCTCAAACAGAAGTAGGGTCATCTTCCAGTGCAAGC...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATGCTTCCATCTGTTTCTaGATACCCGTATGCATACAG +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHASICF*IPVCIQ
Trigger: CTGTATGCATACGGGTATTCAGAAACAGATGGAAGC...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGCAAGCGCTCTCTCATaGTCTCCTCAGAAGAATACT +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRASALS*SPQKNT
Trigger: AGTATTCTTCTGAGGAGATCATGAGAGAGCGCTTGC...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAACATCAAAAGCAGCATaGATAGCTGCTCCAGGGCTA +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRTSKAA*IAAPGL
Trigger: TAGCCCTGGAGCAGCTATGCATGCTGCTTTTGATGT...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGACTACTATCCTCCGGGTaGATTCTGCAGAAACATCCA +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRLLSSG*ILQKHP
Trigger: TGGATGTTTCTGCAGAATGCACCCGGAGGATAGTAG...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTTACTGCGACCTGGTTTaGATGCTGAAGATGGTCCTG +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRYCDLV*MLKMVL
Trigger: CAGGACCATCTTCAGCATGCAAACCAGGTCGCAGTA...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAAAGCTGCTCCATGATTaGGTTGTGCCTGAAACAGTG +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRKLLHD*VVPETV
Trigger: CACTGTTTCAGGCACAACGCAATCATGGAGCAGCTT...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTACAGGAAAGCGGCATCTaGATTCTTCTGCAGGTAGGT +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALQESGI*ILLQVG
Trigger: ACCTACCTGCAGAAGAATGCAGATGCCGCTTTCCTG...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTCCAGGTAGTATGTTATaGCACGGGCTGTCACCTCTA +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRPGSML*HGLSPL
Trigger: TAGAGGTGACAGCCCGTGCCATAACATACTACCTGG...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTAATGAGGAGGACCTTTaGCCTCTATTAACATCAGCA +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELNEEDL*PLLTSA
Trigger: TGCTGATGTTAATAGAGGCCAAAGGTCCTCCTCATT...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATGCTACTACTTCACTGTaGCCTCTTTCTCGAGCTTTA +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHATTSL*PLSRAL
Trigger: TAAAGCTCGAGAAAGAGGCCACAGTGAAGTAGTAGC...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGCAATCACCTGGAGACTaGAGAATTGCTACTACTTCA +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKQSPGD*RIATTS
Trigger: TGAAGTAGTAGCAATTCTCCAGTCTCCAGGTGATTG...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGACATTGTCTATTCGTATaGAGTTCCCAAGATGACTCC +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRHCLFV*SSQDDS
Trigger: GGAGTCATCTTGGGAACTCCATACGAATAGACAATG...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAGGTGTGTCATACAAATaGAGAGGTAGGCGTTCAATT +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRGVSYK*RGRRSI
Trigger: AATTGAACGCCTACCTCTCCATTTGTATGACACACC...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAGTTATACGTGGATCCTaGTGTGTCATACAAATGGAG +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRVIRGS*CVIQME
Trigger: CTCCATTTGTATGACACACCAGGATCCACGTATAAC...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTCTGGAGGTTATACGTaGATCCTGGTGTGTCATACA +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHSGGYT*ILVCHT
Trigger: TGTATGACACACCAGGATCCACGTATAACCTCCAGA...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGATTATTGCCTAGAATCTaGCGCCTCTTAATAGCAAGG +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRLLPRI*RLLIAR
Trigger: CCTTGCTATTAAGAGGCGCCAGATTCTAGGCAATAA...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTTTATTGCCTAGAATCTaGCGCCTCTTAATAGCAAGG +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELLLPRI*RLLIAR
Trigger: CCTTGCTATTAAGAGGCGCCAGATTCTAGGCAATAA...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTACAGGTGTTGACCGATaGATAGCTCGCATCAGTAGC +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRTGVDR*IARISS
Trigger: GCTACTGATGCGAGCTATCCATCGGTCAACACCTGT...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGATGTAATGTATCTTTATaGACGAGGTGTCCGCTGTCA +
Preference number: 4 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGCNVSL*TRCPLS
Trigger: TGACAGCGGACACCTCGTTCATAAAGATACATTACA...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTTCTAAAGAGGAATCCTaGGGCTCCATTTTGCCACAG +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRSKEES*GSILPQ
Trigger: CTGTGGCAAAATGGAGCCTCAGGATTCCTCTTTAGA...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGCCTCTGCAAAGCGTTaGGAGGAGACTTACAATTGT +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRASAKR*EETYNC
Trigger: ACAATTGTAAGTCTCCTCTCAACGCTTTGCAGAGGC...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAGGCAGCATAGTGTGCTaGAATGTCTGTGCAAACACT +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALGSIVC*NVCANT
Trigger: AGTGTTTGCACAGACATTTCAGCACACTATGCTGCC...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTAGGACCTGCCAAAGCTaGCACTTTGCTAATTACACC +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRRTCQS*HFANYT
Trigger: GGTGTAATTAGCAAAGTGTCAGCTTTGGCAGGTCCT...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGACAGTATAGGTTGACTTaGAGTAGATGGCTTTACTTG +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRQYRLT*SRWLYL
Trigger: CAAGTAAAGCCATCTACTTCAAGTCAACCTATACTG...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATGCTGACAGTATAGGTTaGCTTGAAGTAGATGGCTTT +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHADSIG*LEVDGF
Trigger: AAAGCCATCTACTTCAAGTCAACCTATACTGTCAGC...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTAGCTTGCTGACCATCTaGGTTATGAATAGCAATTTC +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELSLLTI*VMNSNF
Trigger: GAAATTGCTATTCATAACTCAGATGGTCAGCAAGCT...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTATGGAGTTCCCAAGATaGCTCCAGCTGAGTTGCTAT +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRMEFPR*LQLSCY
Trigger: ATAGCAACTCAGCTGGAGTCATCTTGGGAACTCCAT...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGTTCCATTACAATTTCTaGTCTCCGTTCCGTTTTGGT +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKFHYNF*SPFRFG
Trigger: ACCAAAACGGAACGGAGATCAGAAATTGTAATGGAA...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTTTCTTGGGATATCCTTaGATAAGGATCACTTGCAAC +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELFLGYP*IRITCN
Trigger: GTTGCAAGTGATCCTTATTCAAGGATATCCCAAGAA...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTAATGGAAGAGTTTTGTaGTCCTTTCAAGCTCATCAC +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELNGRVL*SFQAHH
Trigger: GTGATGAGCTTGAAAGGATCACAAAACTCTTCCATT...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGACCAGTCTATTGTCCTaGATACATTTGGCCAAGAAA +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKTSLLS*IHLAKK
Trigger: TTTCTTGGCCAAATGTATTCAGGACAATAGACTGGT...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTACCAGTCTATTGTCCTaGATACATTTGGCCAAGAAA +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELTSLLS*IHLAKK
Trigger: TTTCTTGGCCAAATGTATTCAGGACAATAGACTGGT...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGCTTCCATCTGTTTCTaGATACCCGTATGCATACAG +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRASICF*IPVCIQ
Trigger: CTGTATGCATACGGGTATTCAGAAACAGATGGAAGC...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGACTTCCTCATGGCTaGAGGAACTTAATTTCTCCA +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRGLPHG*RNLISP
Trigger: TGGAGAAATTAAGTTCCTTCAGCCATGAGGAAGTCC...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGCAAGCGATTACAAAGTaGTTTTATAGCTCCATCCAC +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKQAITK*FYSSIH
Trigger: GTGGATGGAGCTATAAAAGCACTTTGTAATCGCTTG...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTCAAGCGATTACAAAGTaGTTTTATAGCTCCATCCAC +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELQAITK*FYSSIH
Trigger: GTGGATGGAGCTATAAAAGCACTTTGTAATCGCTTG...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCCTAAGAATTCACTTCTaGTTTCTGAACTATCCGATC +
Preference number: 4 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFLRIHF*FLNYPI
Trigger: GATCGGATAGTTCAGAAAGCAGAAGTGAATTCTTAG...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGATCTAAGATTAGCTTCTaGTTCTTTAGCTGCTTTCCC +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRSKISF*FFSCFP
Trigger: GGGAAAGCAGCTAAAGAAGCAGAAGCTAATCTTAGA...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGATTTCATCTGAGGACATaGCACATAAAACCCTCACAA +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRFHLRT*HIKPSQ
Trigger: TTGTGAGGGTTTTATGTGGCATGTCCTCAGATGAAA...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTACAGTTAATCCATGCTTaGCCAATGGAGCTGGGTCTA +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALQLIHA*PMELGL
Trigger: TAGACCCAGCTCCATTGGCCAAGCATGGATTAACTG...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGATTTCTGGATCCCCTCTaGGTTCATTGCATTCCTCTT +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRFLDPL*VHCIPL
Trigger: AAGAGGAATGCAATGAACCCAGAGGGGATCCAGAAA...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGAGGTGTGTCATACAAATaGAGAGGTAGGCGTTCAATT +
Preference number: 4 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGGVSYK*RGRRSI
Trigger: AATTGAACGCCTACCTCTCCATTTGTATGACACACC...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTAGTTCTGTCCATCTTTaGATACCTGGAAAACCCAAT +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELSSVHL*IPGKPN
Trigger: ATTGGGTTTTCCAGGTATCCAAAGATGGACAGAACT...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAGAGTATTCTGCTTCCTaGCCTGTGTCACTCTCACTA +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALEYSAS*PVSLSL
Trigger: TAGTGAGAGTGACACAGGCCAGGAAGCAGAATACTC...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGAGTATTCTGCTTCCTaGCCTGTGTCACTCTCACTA +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPREYSAS*PVSLSL
Trigger: TAGTGAGAGTGACACAGGCCAGGAAGCAGAATACTC...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTATGCGGCGGCCTCCTTTaGTTTCATACTCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALCGGLL*FHTLLL
Trigger: AAGAAGAAGAGTATGAAACCAAAGGAGGCCGCCGCA...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAACTGAGAGGGAGTCATaGCCTTCTTCTGTAGAAGCT +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALTERES*PSSVEA
Trigger: AGCTTCTACAGAAGAAGGCCATGACTCCCTCTCAGT...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGACCACAAAGAATCATCTaGACTTCCTCATGGCTGAAG +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRPQRII*TSSWLK
Trigger: CTTCAGCCATGAGGAAGTCCAGATGATTCTTTGTGG...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTCAGTTTAATAGAGTCTaGCCCACATCATCCATAAAA +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELQFNRV*PTSSIK
Trigger: TTTTATGGATGATGTGGGTCAGACTCTATTAAACTG...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGCAGTTTAATAGAGTCTaGCCCACATCATCCATAAAA +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKQFNRV*PTSSIK
Trigger: TTTTATGGATGATGTGGGTCAGACTCTATTAAACTG...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATCCTTCCTCTAATTATTaGCCAGTCTCTCCAATGATA +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHPSSNY*PVSPMI
Trigger: TATCATTGGAGAGACTGGTCAATAATTAGAGGAAGG...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTTCCATTACAATTTCTaGTCTCCGTTCCGTTTTGGT +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHFHYNF*SPFRFG
Trigger: ACCAAAACGGAACGGAGATCAGAAATTGTAATGGAA...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTAAAGCCATATATTCTTaGAGATGGGCAAAACTGGAA +
Preference number: 4 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELKAIYS*RWAKLE
Trigger: TTCCAGTTTTGCCCATCTTCAAGAATATATGGCTTT...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTACCCCTCTGGGTTCATTaGATTCCTCTTCATCTTTGT +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALPLWVH*IPLHLC
Trigger: ACAAAGATGAAGAGGAATGCAATGAACCCAGAGGGG...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGACAGAAAGACTTTTATTaGCTAGAATCTGGCGCCTCT +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRQKDFY*LESGAS
Trigger: AGAGGCGCCAGATTCTAGGCAATAAAAGTCTTTCTG...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAACAATTGTCGACACCTaGTTACTCAATTTGGAATCT +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRTIVDT*LLNLES
Trigger: AGATTCCAAATTGAGTAACCAGGTGTCGACAATTGT...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGCTACTACTTCACTGTaGCCTCTTTCTCGAGCTTTA +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRATTSL*PLSRAL
Trigger: TAAAGCTCGAGAAAGAGGCCACAGTGAAGTAGTAGC...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTACACATCCAATCACCTaGAGACTGGAGAATTGCTAC +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRTHPIT*RLENCY
Trigger: GTAGCAATTCTCCAGTCTCCAGGTGATTGGATGTGT...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAAGCTTGCTGACCATCTaGGTTATGAATAGCAATTTC +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRSLLTI*VMNSNF
Trigger: GAAATTGCTATTCATAACTCAGATGGTCAGCAAGCT...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGACGTTTTCAGCAGATaGAAGAACAACAATTGGTTC +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRDVFSR*KNNNWF
Trigger: GAACCAATTGTTGTTCTTTCATCTGCTGAAAACGTC...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATAAAGCCATATATTCTTaGAGATGGGCAAAACTGGAA +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHKAIYS*RWAKLE
Trigger: TTCCAGTTTTGCCCATCTTCAAGAATATATGGCTTT...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTTACGGTTTACCTTGCTaGAATTCCTTAGCATCTTCC +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRYGLPC*NSLASS
Trigger: GGAAGATGCTAAGGAATTGCAGCAAGGTAAACCGTA...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAACCCAGAGATGTTTCTaGAGTAAACGAATGTTTCGT +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRTQRCF*SKRMFR
Trigger: ACGAAACATTCGTTTACTGCAGAAACATCTCTGGGT...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGTTCATACGCAGTTTTTaGATTTGTTCCAATCCAGTA +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKFIRSF*ICSNPV
Trigger: TACTGGATTGGAACAAATGCAAAAACTGCGTATGAA...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGCCAGACTTTGTTCCATaGTCACAAAAATCCTTATAT +
Preference number: 4 (lower is better)
Translates to: AAKELIPRVLEALMVENKPDFVP*SQKSLY
Trigger: ATATAAGGATTTTTGTGAGCATGGAACAAAGTCTGG...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTACAGAAAGACTTTTATTaGCTAGAATCTGGCGCCTCT +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALQKDFY*LESGAS
Trigger: AGAGGCGCCAGATTCTAGGCAATAAAAGTCTTTCTG...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGATCGAGCTTTATCCAATaGTGTTTTCCCATCTTCATC +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRSSFIQ*CFPIFI
Trigger: GATGAAGATGGGAAAACACCATTGGATAAAGCTCGA...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGACTAGAAATAGCCCCCTaGTTTAATCCAGACTTTGTT +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRLEIAP*FNPDFV
Trigger: AACAAAGTCTGGATTAAACCAGGGGGCTATTTCTAG...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGATGTAAATTCATCAGGTaGAAAAGTAAACTGAGGCTG +
Preference number: 4 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGCKFIR*KSKLRL
Trigger: CAGCCTCAGTTTACTTTTCCACCTGATGAATTTACA...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAAAAATCCCAAGGAAATaGAAGAGTTTTGTGATCCTT +
Preference number: 4 (lower is better)
Translates to: FTQTQEASPRLCLFCISRKIPRK*KSFVIL
Trigger: AAGGATCACAAAACTCTTCCATTTCCTTGGGATTTT...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATGAAGATGGGCAAAACTaGAAATTTAAACCTAAGTCC +
Preference number: 4 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHEDGQN*KFKPKS
Trigger: GGACTTAGGTTTAAATTTCCAGTTTTGCCCATCTTC...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTTTCTTGGGATATCCTTaGATAAGGATCACTTGCAAC +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRFLGYP*IRITCN
Trigger: GTTGCAAGTGATCCTTATTCAAGGATATCCCAAGAA...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTATACGAGTCCATAAGCTaGAGGATTTACCCATTCATA +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALYESIS*RIYPFI
Trigger: TATGAATGGGTAAATCCTGCAGCTTATGGACTCGTA...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGTTCCTCAATCTGCTaGAAAATTTTTGTGGTGATT +
Preference number: 4 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRGSSIC*KIFVVI
Trigger: AATCACCACAAAAATTTTGCAGCAGATTGAGGAACC...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTTCGAGCTTTATCCAATaGTGTTTTCCCATCTTCATC +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRSSFIQ*CFPIFI
Trigger: GATGAAGATGGGAAAACACCATTGGATAAAGCTCGA...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTATCAACAGCTTTAAAGTaGTCGTCATACAAGTCTCGA +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALSTALK*SSYKSR
Trigger: TCGAGACTTGTATGACGACCACTTTAAAGCTGTTGA...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTCCATCTTTGGATACCTaGAAAACCCAATTTCTCAGT +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRPSLDT*KTQFLS
Trigger: ACTGAGAAATTGGGTTTTCCAGGTATCCAAAGATGG...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTACAACAATTGGTTCATaGACATCAGCTCCTGAAACT +
Preference number: 4 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRTTIGS*TSAPET
Trigger: AGTTTCAGGAGCTGATGTCCATGAACCAATTGTTGT...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTATGTCCTGAATACATTTaGCCAAGAAAATCCCAAGGA +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALCPEYI*PRKSQG
Trigger: TCCTTGGGATTTTCTTGGCCAAATGTATTCAGGACA...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR TCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTATCGAACAAAAACAAATaGGGATCTGTCAAAGTCGTA +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALSNKNK*GSVKVV
Trigger: TACGACTTTGACAGATCCTCATTTGTTTTTGTTCGA...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTACTAAGAATTCACTTCTaGTTTCTGAACTATCCGATC +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALLRIHF*FLNYPI
Trigger: GATCGGATAGTTCAGAAAGCAGAAGTGAATTCTTAG...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAAAGCTGCTTCCTTATTaGTTAATTCAGATACCGAAC +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALKLLPY*LIQIPN
Trigger: GTTCGGTATCTGAATTAACCAATAAGGAAGCAGCTT...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTATGTAAATTCATCAGGTaGAAAAGTAAACTGAGGCTG +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALCKFIR*KSKLRL
Trigger: CAGCCTCAGTTTACTTTTCCACCTGATGAATTTACA...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR GCA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTATTCATACGCAGTTTTTaGATTTGTTCCAATCCAGTA +
Preference number: 4 (lower is better)
Translates to: FVLSLAAKELIPRVLEALFIRSF*ICSNPV
Trigger: TACTGGATTGGAACAAATGCAAAAACTGCGTATGAA...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp GGTAGTGCGTCTGTCCACTGGCGTTCTTCCCCATCTGCTTCAGCCTaGCATGCCGCCACCCTTGCTTTTCATCCTTCGCTGGGTCAAGGG +
Preference number: 5 (lower is better)
Translates to: GSASVHWRSSPSASA*HAATLAFHPSLGQG
Trigger: CCCTTGACCCAGCGAAGGATGAAAAGCAAGGGTGGCGGCATGTCAGGCTGAAGCAGATGGGGAAGAACGCCAGTGGACAGACGCACTACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp GGACAGGTTAGGTACACTCGCACTGGAGCTCATAGGGGCCCCGGCTaGCAACAGAGAGCTCACCGACAGTCTGTTACTTGCCGAAGAGCT +
Preference number: 5 (lower is better)
Translates to: GQVRYTRTGAHRGPG*QQRAHRQSVTCRRA
Trigger: AGCTCTTCGGCAAGTAACAGACTGTCGGTGAGCTCTCTGTTGGCAGCCGGGGCCCCTATGAGCTCCAGTGCGAGTGTACCTAACCTGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp GATCATCTCGCCGTACACTGCTCGTGGTCCGAGTTCGCTCCACAGTaGCTTCCCGCCTGTTCTGTAGCCACACTATTGCTCTGGACGCAC +
Preference number: 5 (lower is better)
Translates to: DHLAVHCSWSEFAPQ*LPACSVATLLLWTH
Trigger: GTGCGTCCAGAGCAATAGTGTGGCTACAGAACAGGCGGGAAGCCACTGTGGAGCGAACTCGGACCACGAGCAGTGTACGGCGAGATGATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp CCACCAGCCGCTGCCATTCGAGACAACAGCTCCTCAGTTAATCCATaGTTGGCCAATGGAGCTGGGTCTACCCCACGACGAGTAAACCGG +
Preference number: 5 (lower is better)
Translates to: PPAAAIRDNSSSVNP*LANGAGSTPRRVNR
Trigger: CCGGTTTACTCGTCGTGGGGTAGACCCAGCTCCATTGGCCAAGCATGGATTAACTGAGGAGCTGTTGTCTCGAATGGCAGCGGCTGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp AATCTGCAGCAGCAGAGGGGGCTCCTGTGGTACTGCGACCTGGTTTaGATGCTGAAGATGGTCCTGATACAGTACCACCAGCCGCTGCCA +
Preference number: 5 (lower is better)
Translates to: NLQQQRGLLWYCDLV*MLKMVLIQYHQPLP
Trigger: TGGCAGCGGCTGGTGGTACTGTATCAGGACCATCTTCAGCATGCAAACCAGGTCGCAGTACCACAGGAGCCCCCTCTGCTGCTGCAGATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp CTGATCTCGCCACTTCCAATCAAGGCCCCTGATAACACGTGCTCCTaGAACCATGTACTTGAGGACCTGAGAGCGCACCAGGCGCCTCTG +
Preference number: 5 (lower is better)
Translates to: LISPLPIKAPDNTCS*NHVLEDLRAHQAPL
Trigger: CAGAGGCGCCTGGTGCGCTCTCAGGTCCTCAAGTACATGGTTCCAGGAGCACGTGTTATCAGGGGCCTTGATTGGAAGTGGCGAGATCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCAACCAGGCTGGGGGTTaGGGCTTAGGGGGATCGAGG +
Preference number: 5 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLNQAGG*GLGGSR
Trigger: CCTCGATCCCCCTAAGCCCAAACCCCCAGCCTGGTT...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp AGGCCCCTGATAACACGTGCTCCTGGAACCATGTACTTGAGGACCTaGGAGCGCACCAGGCGCCTCTGCCTTCTAAGATTAGCTTCTGCT +
Preference number: 5 (lower is better)
Translates to: RPLITRAPGTMYLRT*ERTRRLCLLRLASA
Trigger: AGCAGAAGCTAATCTTAGAAGGCAGAGGCGCCTGGTGCGCTCTCAGGTCCTCAAGTACATGGTTCCAGGAGCACGTGTTATCAGGGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp GTGACGACATGGTGTGTTACGTCAGAGCGAGAGCCAGCTCGGCGTTaGAGGGAGGGACGTCTCAGAATCATAACCTCCTCGTATTCTTGG +
Preference number: 5 (lower is better)
Translates to: VTTWCVTSEREPARR*REGRLRIITSSYSW
Trigger: CCAAGAATACGAGGAGGTTATGATTCTGAGACGTCCCTCCCTGCAACGCCGAGCTGGCTCTCGCTCTGACGTAACACACCATGTCGTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp CTGCCGATGGGAGCGCTCCCCAGAACTATCCAATCTCCGCAGTCCTaGGATTCTGCCTGTAGATCCAGCACTAGACTTAGGCAAAGCCTT +
Preference number: 5 (lower is better)
Translates to: LPMGALPRTIQSPQS*DSACRSSTRLRQSL
Trigger: AAGGCTTTGCCTAAGTCTAGTGCTGGATCTACAGGCAGAATCCCAGGACTGCGGAGATTGGATAGTTCTGGGGAGCGCTCCCATCGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp GTTTGCCACTCTCCTGACAAAGCTCTCCAAGCTAGATGTCTCTCTTaGGGACAGGTTAGGTACACTCGCACTGGAGCTCATAGGGGCCCC +
Preference number: 5 (lower is better)
Translates to: VCHSPDKALQARCLS*GQVRYTRTGAHRGP
Trigger: GGGGCCCCTATGAGCTCCAGTGCGAGTGTACCTAACCTGTCCTCAAGAGAGACATCTAGCTTGGAGAGCTTTGTCAGGAGAGTGGCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGGTACTGCGACCTGGTTaGCATGCTGAAGATGGTCCT +
Preference number: 5 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVVLRPG*HAEDGP
Trigger: AGGACCATCTTCAGCATGCAAACCAGGTCGCAGTAC...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAACCATACGGTAAGAGTTaGAGCCACCAGCATCCCAGG +
Preference number: 5 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKPYGKS*SHQHPR
Trigger: CCTGGGATGCTGGTGGCTCAAACTCTTACCGTATGG...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCTGCGGCGGCCTCCTTaGGTTTCATACTCTTCTTCT +
Preference number: 5 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVLRRPP*VSYSSS
Trigger: AGAAGAAGAGTATGAAACCAAAGGAGGCCGCCGCAG...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTTCTTCCCCACTTGGCTaGAGATCCACAGCTGTAAAG +
Preference number: 5 (lower is better)
Translates to: VRDRQRARDTLVVQVSVISSPLG*RSTAVK
Trigger: CTTTACAGCTGTGGATCTCAAGCCAAGTGGGGAAGA...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp GCTACTGGCCACGCTACACACAGAGCTGCTGCTCCCTTTTCTACTTaGGGAGCCTGCAGCAGCAGACGTCTTGTCTGGACAGTTGTTTTT +
Preference number: 5 (lower is better)
Translates to: ATGHATHRAAAPFST*GACSSRRLVWTVVF
Trigger: AAAAACAACTGTCCAGACAAGACGTCTGCTGCTGCAGGCTCCTCAAGTAGAAAAGGGAGCAGCAGCTCTGTGTGTAGCGTGGCCAGTAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp CCATTACAATTTCTGATCTCCGTTCCGTTTTGGTCGAAGCCAAGCTaGTGTCGCTGCTACTGGCCACGCTACACACAGAGCTGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: PLQFLISVPFWSKPS*CRCYWPRYTQSCCS
Trigger: GGAGCAGCAGCTCTGTGTGTAGCGTGGCCAGTAGCAGCGACATCAGCTTGGCTTCGACCAAAACGGAACGGAGATCAGAAATTGTAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp CCTGGTTACTCAATTTGGAATCTGCAGCAGCAGAGGGGGCTCCTGTaGTACTGCGACCTGGTTTGCATGCTGAAGATGGTCCTGATACAG +
Preference number: 5 (lower is better)
Translates to: PGYSIWNLQQQRGLL*YCDLVCMLKMVLIQ
Trigger: CTGTATCAGGACCATCTTCAGCATGCAAACCAGGTCGCAGTACCACAGGAGCCCCCTCTGCTGCTGCAGATTCCAAATTGAGTAACCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp GCGTTGAGAGGAGACTTACAATTGTCGACACCTGGTTACTCAATTTaGAATCTGCAGCAGCAGAGGGGGCTCCTGTGGTACTGCGACCTG +
Preference number: 5 (lower is better)
Translates to: ALRGDLQLSTPGYSI*NLQQQRGLLWYCDL
Trigger: CAGGTCGCAGTACCACAGGAGCCCCCTCTGCTGCTGCAGATTCCAAATTGAGTAACCAGGTGTCGACAATTGTAAGTCTCCTCTCAACGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp AATAAAGCTGCCTCGTCTCGAATGGGATCAGGAAAGGACACTTGCTaGTTAACTGTTCACACCAGTCTGGCAGAGCCCCACTGGCCAGTG +
Preference number: 5 (lower is better)
Translates to: NKAASSRMGSGKDTC*LTVHTSLAEPHWPV
Trigger: CACTGGCCAGTGGGGCTCTGCCAGACTGGTGTGAACAGTTAACCAGCAAGTGTCCTTTCCTGATCCCATTCGAGACGAGGCAGCTTTATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGTCAGTTAATCCATGCTaGGCCAATGGAGCTGGGTCT +
Preference number: 5 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVSVNPC*ANGAGS
Trigger: AGACCCAGCTCCATTGGCCAAGCATGGATTAACTGA...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGAGTTTTCTGCCTCTTTaGCCAGTCCAGCCAGTCACA +
Preference number: 5 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVSFLPL*PVQPVT
Trigger: TGTGACTGGCTGGACTGGCAAAAGAGGCAGAAAACT...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGCCATACGGTAAGAGTTaGAGCCACCAGCATCCCAGG +
Preference number: 5 (lower is better)
Translates to: DRQRARDTLVVQVSVIKEPYGKS*SHQHPR
Trigger: CCTGGGATGCTGGTGGCTCAAACTCTTACCGTATGG...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGTCTTCCCCACTTGGCTaGAGATCCACAGCTGTAAAG +
Preference number: 5 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVSSPLG*RSTAVK
Trigger: CTTTACAGCTGTGGATCTCAAGCCAAGTGGGGAAGA...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp AAGCTCATCACTGTCCTGTGGGAATGGCGCTGTGAACAGTCCACATaGCCGCTGTACATAGTATCCTGGAGGCTTCAATCCACCTCCAAG +
Preference number: 5 (lower is better)
Translates to: KLITVLWEWRCEQST*PLYIVSWRLQSTSK
Trigger: CTTGGAGGTGGATTGAAGCCTCCAGGATACTATGTACAGCGGTCATGTGGACTGTTCACAGCGCCATTCCCACAGGACAGTGATGAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp TACTCAATTTGGAATCTGCAGCAGCAGAGGGGGCTCCTGTGGTACTaGGACCTGGTTTGCATGCTGAAGATGGTCCTGATACAGTACCAC +
Preference number: 5 (lower is better)
Translates to: YSIWNLQQQRGLLWY*DLVCMLKMVLIQYH
Trigger: GTGGTACTGTATCAGGACCATCTTCAGCATGCAAACCAGGTCGCAGTACCACAGGAGCCCCCTCTGCTGCTGCAGATTCCAAATTGAGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp GAGGAGACTTACAATTGTCGACACCTGGTTACTCAATTTGGAATCTaGAGCAGCAGAGGGGGCTCCTGTGGTACTGCGACCTGGTTTGCA +
Preference number: 5 (lower is better)
Translates to: EETYNCRHLVTQFGI*SSRGGSCGTATWFA
Trigger: TGCAAACCAGGTCGCAGTACCACAGGAGCCCCCTCTGCTGCTGCAGATTCCAAATTGAGTAACCAGGTGTCGACAATTGTAAGTCTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp GAGCCTCTGCAAAGCGTTGAGAGGAGACTTACAATTGTCGACACCTaGTTACTCAATTTGGAATCTGCAGCAGCAGAGGGGGCTCCTGTG +
Preference number: 5 (lower is better)
Translates to: EPLQSVERRLTIVDT*LLNLESAAAEGAPV
Trigger: CACAGGAGCCCCCTCTGCTGCTGCAGATTCCAAATTGAGTAACCAGGTGTCGACAATTGTAAGTCTCCTCTCAACGCTTTGCAGAGGCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGAGCCTCTGCAAAGCGTaGAGAGGAGACTTACAATTG +
Preference number: 5 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVSLCKA*RGDLQL
Trigger: CAATTGTAAGTCTCCTCTCAACGCTTTGCAGAGGCT...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTCAGAGTCTTTGCTACTaGAGGTCTTCCAAAACATGC +
Preference number: 5 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIQSLCY*RSSKTC
Trigger: GCATGTTTTGGAAGACCTCAAGTAGCAAAGACTCTG...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTCAGTTCTGTCCATCTTaGGATACCTGGAAAACCCAA +
Preference number: 5 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIQFCPS*DTWKTQ
Trigger: TTGGGTTTTCCAGGTATCCAAAGATGGACAGAACTG...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGGTTGACCCTGGTTCATaGAGACTGCAGTCATCAACA +
Preference number: 5 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVVDPGS*RLQSST
Trigger: TGTTGATGACTGCAGTCTCAATGAACCAGGGTCAAC...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGGTGGATGAAACAGGTTaGGGTGATGCCACTGTATCA +
Preference number: 5 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVVDETG*GDATVS
Trigger: TGATACAGTGGCATCACCCAAACCTGTTTCATCCAC...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTCGGCTTAGGTTCATGTaGTTGGTGGCATTAGTCCGT +
Preference number: 5 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVRLRFM*LVALVR
Trigger: ACGGACTAATGCCACCAACAACATGAACCTAAGCCG...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAACGGCTTAGGTTCATGTaGTTGGTGGCATTAGTCCGT +
Preference number: 5 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKRLRFM*LVALVR
Trigger: ACGGACTAATGCCACCAACAACATGAACCTAAGCCG...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAACCCAAAGTGTTAGTGTaGTTGTCACTGCTGCTTCGG +
Preference number: 5 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKPKVLV*LSLLLR
Trigger: CCGAAGCAGCAGTGACAACAACACTAACACTTTGGG...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGGTTGTCTGCTGGACATaGGTACGACCAGGTCTAGGA +
Preference number: 5 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGVVCWT*VRPGLG
Trigger: TCCTAGACCTGGTCGTACCAATGTCCAGCAGACAAC...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGGTTGTCTGCTGGACATaGGTACGACCAGGTCTAGGA +
Preference number: 5 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQVVCWT*VRPGLG
Trigger: TCCTAGACCTGGTCGTACCAATGTCCAGCAGACAAC...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp GAAGGTGAGAACACAATTCAAACCACCAGCCTCAAAGACTGCCCCTaGCTCACGCGTGCAGATCAGTTCCAGCACCTTTACACACTGTTC +
Preference number: 5 (lower is better)
Translates to: EGENTIQTTSLKDCP*LTRADQFQHLYTLF
Trigger: GAACAGTGTGTAAAGGTGCTGGAACTGATCTGCACGCGTGAGTCAGGGGCAGTCTTTGAGGCTGGTGGTTTGAATTGTGTTCTCACCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp TTCCCTACAGTCAGTTTCGTGGGTCCCGGTGCTGACAGTATAGGTTaGCTTGAAGTAGATGGCTTTACTTGGCCCCGGGCTCTTTGTAAC +
Preference number: 5 (lower is better)
Translates to: FPTVSFVGPGADSIG*LEVDGFTWPRALCN
Trigger: GTTACAAAGAGCCCGGGGCCAAGTAAAGCCATCTACTTCAAGTCAACCTATACTGTCAGCACCGGGACCCACGAAACTGACTGTAGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp GTTTGGGTGATGCCACTGTATCAGGGTCGTACCCTGGTGCAAGCTTaGGGTCAAATTTTCCTTCTGCGCCCATACGGTAAGAGTTTGAGC +
Preference number: 5 (lower is better)
Translates to: VWVMPLYQGRTLVQA*GQIFLLRPYGKSLS
Trigger: GCTCAAACTCTTACCGTATGGGCGCAGAAGGAAAATTTGACCTCAAGCTTGCACCAGGGTACGACCCTGATACAGTGGCATCACCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp TGCTTTTATAGCTCCATCCACCCCTACTATCCTCCGGGTGCATTCTaGAGAAACATCCAGGTAGTATGTTATGGCACGGGCTGTCACCTC +
Preference number: 5 (lower is better)
Translates to: CFYSSIHPYYPPGAF*RNIQVVCYGTGCHL
Trigger: GAGGTGACAGCCCGTGCCATAACATACTACCTGGATGTTTCTGCAGAATGCACCCGGAGGATAGTAGGGGTGGATGGAGCTATAAAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp ACTTCCTTTCCGCATTTTCACTTCCCGTTTCCGCTGTTAGGGTGCTaGTGCTTGCACTGGAAGATGACCCTACTTCTGTTTGAGGGACGT +
Preference number: 5 (lower is better)
Translates to: TSFPHFHFPFPLLGC*CLHWKMTLLLFEGR
Trigger: ACGTCCCTCAAACAGAAGTAGGGTCATCTTCCAGTGCAAGCACCAGCACCCTAACAGCGGAAACGGGAAGTGAAAATGCGGAAAGGAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp GCACGGCAGCTGTCGAGGAAATCATATAAGGAGTATTCTGCTTCCTaGCCTGTGTCACTCTCACTAGAGGTTGATGTGAGGCTGGTGGTT +
Preference number: 5 (lower is better)
Translates to: ARQLSRKSYKEYSAS*PVSLSLEVDVRLVV
Trigger: AACCACCAGCCTCACATCAACCTCTAGTGAGAGTGACACAGGCCAGGAAGCAGAATACTCCTTATATGATTTCCTCGACAGCTGCCGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTTCTCTGCTGGTCCTGTaGTTAAGTTCAACTACCACC +
Preference number: 5 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVSLLVL*LSSTTT
Trigger: GGTGGTAGTTGAACTTAACAACAGGACCAGCAGAGA...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGTCAGTTAATCCATGCTaGGCCAATGGAGCTGGGTCT +
Preference number: 5 (lower is better)
Translates to: DRQRARDTLVVQVSVIKESVNPC*ANGAGS
Trigger: AGACCCAGCTCCATTGGCCAAGCATGGATTAACTGA...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAGCCTCTGCAAAGCGTaGAGAGGAGACTTACAATTG +
Preference number: 5 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVSLCKA*RGDLQL
Trigger: CAATTGTAAGTCTCCTCTCAACGCTTTGCAGAGGCT...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTGCCGTAACAGAGTCTTaGCTACTTGAGGTCTTCCAA +
Preference number: 5 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVAVTES*LLEVFQ
Trigger: TTGGAAGACCTCAAGTAGCAAAGACTCTGTTACGGC...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGTTCTGTCCATCTTaGGATACCTGGAAAACCCAA +
Preference number: 5 (lower is better)
Translates to: GVHDYVRDRQRARDTLVVQFCPS*DTWKTQ
Trigger: TTGGGTTTTCCAGGTATCCAAAGATGGACAGAACTG...CACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTGTCTTGTCTGGACAGTaGTTTTTCACCAAGCTGCTC +
Preference number: 5 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVVLSGQ*FFTKLL
Trigger: GAGCAGCTTGGTGAAAAACAACTGTCCAGACAAGAC...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGGCAGCAGCAGACGTCTaGTCTGGACAGTTGTTTTTC +
Preference number: 5 (lower is better)
Translates to: DRQRARDTLVVQVSVIKEAAADV*SGQLFF
Trigger: GAAAAACAACTGTCCAGACAAGACGTCTGCTGCTGC...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGCCCAAAGTGTTAGTGTaGTTGTCACTGCTGCTTCGG +
Preference number: 5 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQPKVLV*LSLLLR
Trigger: CCGAAGCAGCAGTGACAACAACACTAACACTTTGGG...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp TGTCCTCCAAGCGGCCATAGGGCAGATTCCTTCCTTCTGATGATGTaGCGACTACGAGTCCATAAGCTGCAGGATTTACCCATTCATACG +
Preference number: 5 (lower is better)
Translates to: CPPSGHRADSFLLMM*RLRVHKLQDLPIHT
Trigger: CGTATGAATGGGTAAATCCTGCAGCTTATGGACTCGTAGTCGTCACATCATCAGAAGGAAGGAATCTGCCCTATGGCCGCTTGGAGGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp CAGTGCAGACCTTCCATAGCCACGAGCATGACGAAGTGTGTATGCTaGAGGTATTACCCAGACACCCAGATCTATGGCAAACCAGGCATT +
Preference number: 5 (lower is better)
Translates to: QCRPSIATSMTKCVC*RYYPDTQIYGKPGI
Trigger: AATGCCTGGTTTGCCATAGATCTGGGTGTCTGGGTAATACCTTCAGCATACACACTTCGTCATGCTCGTGGCTATGGAAGGTCTGCACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp CCCTTGCTTTTCATCCTTCGCTGGGTCAAGGGGCCATGTTGCAGTTaGCCCTGGTTCATTGAGACTGCAGTCATCAACATGGGTATACAA +
Preference number: 5 (lower is better)
Translates to: PLLFILRWVKGPCCS*PWFIETAVINMGIQ
Trigger: TTGTATACCCATGTTGATGACTGCAGTCTCAATGAACCAGGGTCAACTGCAACATGGCCCCTTGACCCAGCGAAGGATGAAAAGCAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp GAGGGACGTCTCAGAATCATAACCTCCTCGTATTCTTGGTCCTCCTaGTTGTCATCTTCATTCTCATCGTCTTCCTCGTCAGGCTCAGGC +
Preference number: 5 (lower is better)
Translates to: EGRLRIITSSYSWSS*LSSSFSSSSSSGSG
Trigger: GCCTGAGCCTGACGAGGAAGACGATGAGAATGAAGATGACAATCAGGAGGACCAAGAATACGAGGAGGTTATGATTCTGAGACGTCCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp AAACAGCGATCCACATTGTCAGACATCAAAAGCAGCATGCATAGCTaGTCCAGGGCTATTAGCTGCATGTCCCTTTCATCTCCCTGTCCC +
Preference number: 5 (lower is better)
Translates to: KQRSTLSDIKSSMHS*SRAISCMSLSSPCP
Trigger: GGGACAGGGAGATGAAAGGGACATGCAGCTAATAGCCCTGGAGCAGCTATGCATGCTGCTTTTGATGTCTGACAATGTGGATCGCTGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp TCCTTTCCGCATTTTCACTTCCCGTTTCCGCTGTTAGGGTGCTGGTaGTTGCACTGGAAGATGACCCTACTTCTGTTTGAGGGACGTTTT +
Preference number: 5 (lower is better)
Translates to: SFPHFHFPFPLLGCW*LHWKMTLLLFEGRF
Trigger: AAAACGTCCCTCAAACAGAAGTAGGGTCATCTTCCAGTGCAAGCACCAGCACCCTAACAGCGGAAACGGGAAGTGAAAATGCGGAAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp CTAACTTCCTTTCCGCATTTTCACTTCCCGTTTCCGCTGTTAGGGTaGTGGTGCTTGCACTGGAAGATGACCCTACTTCTGTTTGAGGGA +
Preference number: 5 (lower is better)
Translates to: LTSFPHFHFPFPLLG*WCLHWKMTLLLFEG
Trigger: TCCCTCAAACAGAAGTAGGGTCATCTTCCAGTGCAAGCACCAGCACCCTAACAGCGGAAACGGGAAGTGAAAATGCGGAAAGGAAGTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp AAGCTGAAGGACGTCCTCTACTCCACAGGGGCTCTGCCCGTTGCCTaGTTTAGCCTGAGGCTGCTCTTTTGTCAAATTAAGAATATCACT +
Preference number: 5 (lower is better)
Translates to: KLKDVLYSTGALPVA*FSLRLLFCQIKNIT
Trigger: AGTGATATTCTTAATTTGACAAAAGAGCAGCCTCAGGCTAAAGCAGGCAACGGGCAGAGCCCCTGTGGAGTAGAGGACGTCCTTCAGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp TTAGCCAGTCCACCTGGGGGCAGAGTTGAACAGCCAGTGGTAAACTaGAGGAATGCTTTCCTTTCATCTGAGGACATGCCACATAAAACC +
Preference number: 5 (lower is better)
Translates to: LASPPGGRVEQPVVN*RNAFLSSEDMPHKT
Trigger: GGTTTTATGTGGCATGTCCTCAGATGAAAGGAAAGCATTCCTGCAGTTTACCACTGGCTGTTCAACTCTGCCCCCAGGTGGACTGGCTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp CATTTTCACTTCCCGTTTCCGCTGTTAGGGTGCTGGTGCTTGCACTaGAAGATGACCCTACTTCTGTTTGAGGGACGTTTTCAGCAGATG +
Preference number: 5 (lower is better)
Translates to: HFHFPFPLLGCWCLH*KMTLLLFEGRFQQM
Trigger: CATCTGCTGAAAACGTCCCTCAAACAGAAGTAGGGTCATCTTCCAGTGCAAGCACCAGCACCCTAACAGCGGAAACGGGAAGTGAAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGACCTGGTTACTCAATTaGGAATCTGCAGCAGCAGAG +
Preference number: 5 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGTWLLN*ESAAAE
Trigger: CTCTGCTGCTGCAGATTCCAAATTGAGTAACCAGGT...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGGCCGTAACAGAGTCTTaGCTACTTGAGGTCTTCCAA +
Preference number: 5 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQAVTES*LLEVFQ
Trigger: TTGGAAGACCTCAAGTAGCAAAGACTCTGTTACGGC...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTGCCAAAGCTGACACTTaGCTAATTACACCAAGTCTG +
Preference number: 5 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVAKADT*LITPSL
Trigger: CAGACTTGGTGTAATTAGCAAAGTGTCAGCTTTGGC...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGCCAAAGCTGACACTTaGCTAATTACACCAAGTCTG +
Preference number: 5 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKAKADT*LITPSL
Trigger: CAGACTTGGTGTAATTAGCAAAGTGTCAGCTTTGGC...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGCTTAGGTTCATGTTGTaGGTGGCATTAGTCCGTGCT +
Preference number: 5 (lower is better)
Translates to: DRQRARDTLVVQVSVIKELRFML*VALVRA
Trigger: AGCACGGACTAATGCCACCAACAACATGAACCTAAG...CTCTTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAAAAGTGTTAGTGTTGTaGTCACTGCTGCTTCGGCTT +
Preference number: 5 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKKVLVL*SLLLRL
Trigger: AAGCCGAAGCAGCAGTGACAACAACACTAACACTTT...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGAACCTCCTCGTATTCTaGGTCCTCCTGATTGTCATC +
Preference number: 5 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQNLLVF*VLLIVI
Trigger: GATGACAATCAGGAGGACCAAGAATACGAGGAGGTT...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTCAGAAAGACTTTTATaGCCTAGAATCTGGCGCCTC +
Preference number: 5 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLSERLL*PRIWRL
Trigger: GAGGCGCCAGATTCTAGGCAATAAAAGTCTTTCTGA...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp GTCACTGTTGATGTAGTACCAGGTGTGGTCAAATTAGGGAAACTCTaGGCACCCATAAGTGGAGAAGTTGCGGTGCTCATCACGTTCCTC +
Preference number: 5 (lower is better)
Translates to: VTVDVVPGVVKLGKL*APISGEVAVLITFL
Trigger: GAGGAACGTGATGAGCACCGCAACTTCTCCACTTATGGGTGCTCAGAGTTTCCCTAATTTGACCACACCTGGTACTACATCAACAGTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp CTAAGTCCTCGATGCTCAGTGGAGGTCCCGAGCCTGATGGATTCCTaGGCACGAGTTCCTGTAACTTTGTGTTCTTCTCATCTTCAGAAA +
Preference number: 5 (lower is better)
Translates to: LSPRCSVEVPSLMDS*ARVPVTLCSSHLQK
Trigger: TTTCTGAAGATGAGAAGAACACAAAGTTACAGGAACTCGTGCTCAGGAATCCATCAGGCTCGGGACCTCCACTGAGCATCGAGGACTTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp GAAGCTCTGACCTCAGAAGATCGTGTGTTACTAGTGGAGAGCCTCTaGAAAGCGTTGAGAGGAGACTTACAATTGTCGACACCTGGTTAC +
Preference number: 5 (lower is better)
Translates to: EALTSEDRVLLVESL*KALRGDLQLSTPGY
Trigger: GTAACCAGGTGTCGACAATTGTAAGTCTCCTCTCAACGCTTTGCAGAGGCTCTCCACTAGTAACACACGATCTTCTGAGGTCAGAGCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp AAATGTCTGTGCAAACACTGGCAGCAACCTCTTCAAGTAGAGCGGTaGCATTTCTGGATCCCCTCTGGGTTCATTGCATTCCTCTTCATC +
Preference number: 5 (lower is better)
Translates to: KCLCKHWQQPLQVER*HFWIPSGFIAFLFI
Trigger: GATGAAGAGGAATGCAATGAACCCAGAGGGGATCCAGAAATGGCACCGCTCTACTTGAAGAGGTTGCTGCCAGTGTTTGCACAGACATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp CTATCCTCCGGGTGCATTCTGCAGAAACATCCAGGTAGTATGTTATaGCACGGGCTGTCACCTCTAAGACATTGTCTGGAGCACTTTCAT +
Preference number: 5 (lower is better)
Translates to: LSSGCILQKHPGSML*HGLSPLRHCLEHFH
Trigger: ATGAAAGTGCTCCAGACAATGTCTTAGAGGTGACAGCCCGTGCCATAACATACTACCTGGATGTTTCTGCAGAATGCACCCGGAGGATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp AGAGCATCAGTATCTTTACTTCGAATACAGTCTATAAGCTGCCGATaGGAGCGCTCCCCAGAACTATCCAATCTCCGCAGTCCTGGGATT +
Preference number: 5 (lower is better)
Translates to: RASVSLLRIQSISCR*ERSPELSNLRSPGI
Trigger: AATCCCAGGACTGCGGAGATTGGATAGTTCTGGGGAGCGCTCCCATCGGCAGCTTATAGACTGTATTCGAAGTAAAGATACTGATGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp TGTTTTTCACCAAGCTGCTCCATGATTGCGTTGTGCCTGAAACAGTaGATGAAACAGGTTTGGGTGATGCCACTGTATCAGGGTCGTACC +
Preference number: 5 (lower is better)
Translates to: CFSPSCSMIALCLKQ*MKQVWVMPLYQGRT
Trigger: GGTACGACCCTGATACAGTGGCATCACCCAAACCTGTTTCATCCACTGTTTCAGGCACAACGCAATCATGGAGCAGCTTGGTGAAAAACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTTCATCAAGGAAAATTTaGCAGAGAGCTGGCAGGAAA +
Preference number: 5 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVSSRKI*QRAGRK
Trigger: TTTCCTGCCAGCTCTCTGCAAAATTTTCCTTGATGA...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTGGTCAAGGGGCCATGTaGCAGTTGACCCTGGTTCAT +
Preference number: 5 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELGQGAM*QLTLVH
Trigger: ATGAACCAGGGTCAACTGCAACATGGCCCCTTGACC...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGTGCTCCCTTTTCTACTaGAGGAGCCTGCAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: AAKELIPRVLEALMVENKCSLFY*RSLQQQ
Trigger: CTGCTGCTGCAGGCTCCTCAAGTAGAAAAGGGAGCA...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTTGCTCCCTTTTCTACTaGAGGAGCCTGCAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELCSLFY*RSLQQQ
Trigger: CTGCTGCTGCAGGCTCCTCAAGTAGAAAAGGGAGCA...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTGCCATTACAAGACAGTaGAAGCAGTTTTTGTACATA +
Preference number: 5 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIAITRQ*KQFLYI
Trigger: TATGTACAAAAACTGCTTCAACTGTCTTGTAATGGC...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GTGCGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTGGTTTAATCCAGACTTaGTTCCATGCTCACAAAAAT +
Preference number: 5 (lower is better)
Translates to: VRDRQRARDTLVVQVSVIGLIQT*FHAHKN
Trigger: ATTTTTGTGAGCATGGAACAAAGTCTGGATTAAACC...AATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCGCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAAACCAGGCTGGGGGTTaGGGCTTAGGGGGATCGAGG +
Preference number: 5 (lower is better)
Translates to: FVLSLAAKELIPRVLEALNQAGG*GLGGSR
Trigger: CCTCGATCCCCCTAAGCCCAAACCCCCAGCCTGGTT...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp GCTGGTCCTGTTGTTAAGTTCAACTACCACCAAGCGATTACAAAGTaGTTTTATAGCTCCATCCACCCCTACTATCCTCCGGGTGCATTC +
Preference number: 5 (lower is better)
Translates to: AGPVVKFNYHQAITK*FYSSIHPYYPPGAF
Trigger: GAATGCACCCGGAGGATAGTAGGGGTGGATGGAGCTATAAAAGCACTTTGTAATCGCTTGGTGGTAGTTGAACTTAACAACAGGACCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp TCTATGAGAGCATCAGTATCTTTACTTCGAATACAGTCTATAAGCTaGCGATGGGAGCGCTCCCCAGAACTATCCAATCTCCGCAGTCCT +
Preference number: 5 (lower is better)
Translates to: SMRASVSLLRIQSIS*RWERSPELSNLRSP
Trigger: AGGACTGCGGAGATTGGATAGTTCTGGGGAGCGCTCCCATCGGCAGCTTATAGACTGTATTCGAAGTAAAGATACTGATGCTCTCATAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp TGCAAACACTGGCAGCAACCTCTTCAAGTAGAGCGGTGCCATTTCTaGATCCCCTCTGGGTTCATTGCATTCCTCTTCATCTTTGTTTGT +
Preference number: 5 (lower is better)
Translates to: CKHWQQPLQVERCHF*IPSGFIAFLFIFVC
Trigger: ACAAACAAAGATGAAGAGGAATGCAATGAACCCAGAGGGGATCCAGAAATGGCACCGCTCTACTTGAAGAGGTTGCTGCCAGTGTTTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp CAGTCCTCTGAAACTCAGCCGCCACAAGAGCATAAAACTCTAAAGTaGGTCCCAAGCCAGTTCCTTCTTCTCCTAGAAATTCAACCTCGA +
Preference number: 5 (lower is better)
Translates to: QSSETQPPQEHKTLK*VPSQFLLLLEIQPR
Trigger: TCGAGGTTGAATTTCTAGGAGAAGAAGGAACTGGCTTGGGACCCACTTTAGAGTTTTATGCTCTTGTGGCGGCTGAGTTTCAGAGGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCTTCTCCAACTTGGATTaGAGTTTTCTGCCTCTTTTG +
Preference number: 5 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLFSNLD*SFLPLL
Trigger: CAAAAGAGGCAGAAAACTCAAATCCAAGTTGGAGAA...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAATTCACCTTCGATACATaGTCTATTCGTATGGAGTTC +
Preference number: 5 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKFTFDT*SIRMEF
Trigger: GAACTCCATACGAATAGACAATGTATCGAAGGTGAA...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp CGGGACAGACAGAGAGCACGGGACACTCTGGTAGTGCAGGTGTCTGTCATTAAAGAGGTAGGCGTTCAATaGATTCTAGTACAGCTATTA +
Preference number: 5 (lower is better)
Translates to: RDRQRARDTLVVQVSVIKEVGVQ*ILVQLL
Trigger: TAATAGCTGTACTAGAATCAATTGAACGCCTACCTC...TTTAATGACAGACACCTGCACTACCAGAGTGTCCCGTGCTCTCTGTCTGTCCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATGGTCAAGGGGCCATGTaGCAGTTGACCCTGGTTCAT +
Preference number: 5 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHGQGAM*QLTLVH
Trigger: ATGAACCAGGGTCAACTGCAACATGGCCCCTTGACC...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGATCTCCGTTCCGTTTaGGTCGAAGCCAAGCTGATG +
Preference number: 5 (lower is better)
Translates to: AAKELIPRVLEALMVENKDLRSV*VEAKLM
Trigger: CATCAGCTTGGCTTCGACCAAAACGGAACGGAGATC...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ATGACAAGGGTGTGCATGATTATGTGCGGGACAGACAGAGAGCACGGGACACTCGAAGCTGCTTCCTTATaGGTTAATTCAGATACCGAA +
Preference number: 5 (lower is better)
Translates to: MTRVCMIMCGTDREHGTLEAASL*VNSDTE
Trigger: TTCGGTATCTGAATTAACCAATAAGGAAGCAGCTTC...GAGTGTCCCGTGCTCTCTGTCTGTCCCGCACATAATCATGCACACCCTTGTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGACTGCGGCGGCCTCCTTaGGTTTCATACTCTTCTTCT +
Preference number: 5 (lower is better)
Translates to: FTQTQEASPRLCLFCISRLRRPP*VSYSSS
Trigger: AGAAGAAGAGTATGAAACCAAAGGAGGCCGCCGCAG...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp CAGAGTCTCGATACCACAGCCATCGCAGAGTGTAATGTATCTTTATaGACGAGGTGTCCGCTGTCACGAATGAAGGTGAGAACACAATTC +
Preference number: 5 (lower is better)
Translates to: QSLDTTAIAECNVSL*TRCPLSRMKVRTQF
Trigger: GAATTGTGTTCTCACCTTCATTCGTGACAGCGGACACCTCGTTCATAAAGATACATTACACTCTGCGATGGCTGTGGTATCGAGACTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp TCGATACATTGTCTATTCGTATGGAGTTCCCAAGATGACTCCAGCTaGGTTGCTATATTTCTGAGTGTCACTACCACCCCACGAGGCATG +
Preference number: 5 (lower is better)
Translates to: SIHCLFVWSSQDDSS*VAIFLSVTTTPRGM
Trigger: CATGCCTCGTGGGGTGGTAGTGACACTCAGAAATATAGCAACTCAGCTGGAGTCATCTTGGGAACTCCATACGAATAGACAATGTATCGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp GTTAGGGTGCTGGTGCTTGCACTGGAAGATGACCCTACTTCTGTTTaGGGGACGTTTTCAGCAGATGAAAGAACAACAATTGGTTCATGG +
Preference number: 5 (lower is better)
Translates to: VRVLVLALEDDPTSV*GTFSADERTTIGSW
Trigger: CCATGAACCAATTGTTGTTCTTTCATCTGCTGAAAACGTCCCTCAAACAGAAGTAGGGTCATCTTCCAGTGCAAGCACCAGCACCCTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp AGTGTCACTACCACCCCACGAGGCATGCTTTCAACAGCTTTAAAGTaGTCGTCATACAAGTCTCGAGCCATAGTTCGTACCTTTTGCTTT +
Preference number: 5 (lower is better)
Translates to: SVTTTPRGMLSTALK*SSYKSRAIVRTFCF
Trigger: AAAGCAAAAGGTACGAACTATGGCTCGAGACTTGTATGACGACCACTTTAAAGCTGTTGAAAGCATGCCTCGTGGGGTGGTAGTGACACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp GCTCAGGCAAATCCTCGTCATCATCTAGTTCAGCTAAGAGAGTACTaGCACGGCAGCTGTCGAGGAAATCATATAAGGAGTATTCTGCTT +
Preference number: 5 (lower is better)
Translates to: AQANPRHHLVQLREY*HGSCRGNHIRSILL
Trigger: AAGCAGAATACTCCTTATATGATTTCCTCGACAGCTGCCGTGCCAGTACTCTCTTAGCTGAACTAGATGATGACGAGGATTTGCCTGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGTTCACCTTCGATACATaGTCTATTCGTATGGAGTTC +
Preference number: 5 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGFTFDT*SIRMEF
Trigger: GAACTCCATACGAATAGACAATGTATCGAAGGTGAA...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGGAGGTAGGCGTTCAATaGATTCTAGTACAGCTATTA +
Preference number: 5 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQEVGVQ*ILVQLL
Trigger: TAATAGCTGTACTAGAATCAATTGAACGCCTACCTC...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTATTCATACGCAGTTTTaGCATTTGTTCCAATCCAGT +
Preference number: 5 (lower is better)
Translates to: ALVKQHSVLCWIPAGWVVIHTQF*HLFQSS
Trigger: ACTGGATTGGAACAAATGCAAAAACTGCGTATGAAT...AACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTACAAGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGAGATCTCCGTTCCGTTTaGGTCGAAGCCAAGCTGATG +
Preference number: 5 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGDLRSV*VEAKLM
Trigger: CATCAGCTTGGCTTCGACCAAAACGGAACGGAGATC...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp GCAAGTGGCCATCATCATCATCCTCTTGATCAAGGACAGTTGCAGTaGTTTCCACTAGTGTTGTGGGCAAATTGTGACCAACGTCAGAAT +
Preference number: 5 (lower is better)
Translates to: ASGHHHHPLDQGQLQ*FPLVLWANCDQRQN
Trigger: ATTCTGACGTTGGTCACAATTTGCCCACAACACTAGTGGAAATCACTGCAACTGTCCTTGATCAAGAGGATGATGATGATGGCCACTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp TTCGTCCTTCAAATAACAGCACCAAGAGGAGGTCAACCAGACGCATaGTATCAAGCACACATCTTTCATCACCCTGTAATGCACTTTCGA +
Preference number: 5 (lower is better)
Translates to: FVLQITAPRGGQPDA*YQAHIFHHPVMHFR
Trigger: TCGAAAGTGCATTACAGGGTGATGAAAGATGTGTGCTTGATACCATGCGTCTGGTTGACCTCCTCTTGGTGCTGTTATTTGAAGGACGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp CACATCCAATCACCTGGAGACTGGAGAATTGCTACTACTTCACTGTaGCCTCTTTCTCGAGCTTTATCCAATGGTGTTTTCCCATCTTCA +
Preference number: 5 (lower is better)
Translates to: HIQSPGDWRIATTSL*PLSRALSNGVFPSS
Trigger: TGAAGATGGGAAAACACCATTGGATAAAGCTCGAGAAAGAGGCCACAGTGAAGTAGTAGCAATTCTCCAGTCTCCAGGTGATTGGATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp CATGTTGCAGTTGACCCTGGTTCATTGAGACTGCAGTCATCAACATaGGTATACAAAGAAGTCCAGTTCTGTCCATCTTTGGATACCTGG +
Preference number: 5 (lower is better)
Translates to: HVAVDPGSLRLQSST*VYKEVQFCPSLDTW
Trigger: CCAGGTATCCAAAGATGGACAGAACTGGACTTCTTTGTATACCCATGTTGATGACTGCAGTCTCAATGAACCAGGGTCAACTGCAACATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGATCTCTGCTGGTCCTGTaGTTAAGTTCAACTACCACC +
Preference number: 5 (lower is better)
Translates to: FTQTQEASPRLCLFCISRSLLVL*LSSTTT
Trigger: GGTGGTAGTTGAACTTAACAACAGGACCAGCAGAGA...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTACCTGGTTACTCAATTaGGAATCTGCAGCAGCAGAG +
Preference number: 5 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELTWLLN*ESAAAE
Trigger: CTCTGCTGCTGCAGATTCCAAATTGAGTAACCAGGT...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCAGAGGAGACTTACAATaGTCGACACCTGGTTACTCA +
Preference number: 5 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFRGDLQ*STPGYS
Trigger: TGAGTAACCAGGTGTCGACAATTGTAAGTCTCCTCT...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCGTAATGCACTTTCGATaGAATCTGGAAGCTCTGACC +
Preference number: 5 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFVMHFR*NLEALT
Trigger: GGTCAGAGCTTCCAGATTCAATCGAAAGTGCATTAC...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATCTGGAGACTGGAGAATaGCTACTACTTCACTGTGGC +
Preference number: 5 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHLETGE*LLLHCG
Trigger: GCCACAGTGAAGTAGTAGCAATTCTCCAGTCTCCAG...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGTCCCCTCTGGGTTCATaGCATTCCTCTTCATCTTTG +
Preference number: 5 (lower is better)
Translates to: AAKELIPRVLEALMVENKSPLGS*HSSSSL
Trigger: CAAAGATGAAGAGGAATGCAATGAACCCAGAGGGGA...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGAAGTTTTCTGCCTCTTTaGCCAGTCCAGCCAGTCACA +
Preference number: 5 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGSFLPL*PVQPVT
Trigger: TGTGACTGGCTGGACTGGCAAAAGAGGCAGAAAACT...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGTTCGTACCTTTTGCTTaGTTTTCTCCAACTTGGATT +
Preference number: 5 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQFVPFA*FSPTWI
Trigger: AATCCAAGTTGGAGAAAACAAAGCAAAAGGTACGAA...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAAACCTCCTCGTATTCTaGGTCCTCCTGATTGTCATC +
Preference number: 5 (lower is better)
Translates to: FTQTQEASPRLCLFCISRNLLVF*VLLIVI
Trigger: GATGACAATCAGGAGGACCAAGAATACGAGGAGGTT...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGGGTTTAATCCAGACTTaGTTCCATGCTCACAAAAAT +
Preference number: 5 (lower is better)
Translates to: VKQHSVLCWIPAGWVVKGGLIQT*FHAHKN
Trigger: ATTTTTGTGAGCATGGAACAAAGTCTGGATTAAACC...CCCTTTAACTACCCAGCCAGCAGGTATCCAGCACAGGACACTGTGTTGCTTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGAAGAATATCACTACTTaGAAGACTAGAAATAGCCCC +
Preference number: 5 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQKNITT*KTRNSP
Trigger: GGGGCTATTTCTAGTCTTCAAAGTAGTGATATTCTT...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGGCTGCCCTGTGGAACAGATTAGTTTGCTCATATaGCTTTTAATGTCGCCCATG +
Preference number: 5 (lower is better)
Translates to: TVPFTVSTDDLRGCPVEQISLLI*LLMSPM
Trigger: CATGGGCGACATTAAAAGCAATATGAGCAAACTAAT...CTGTTCCACAGGGCAGCCTCTCAGATCATCAGTGCTCACTGTAAATGGAACCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp CTCTTTCTCGAGCTTTATCCAATGGTGTTTTCCCATCTTCATCTCTaGGATCCGGATTTGCACCATGCCGTAACAGAGTCTTTGCTACTT +
Preference number: 5 (lower is better)
Translates to: LFLELYPMVFSHLHL*DPDLHHAVTESLLL
Trigger: AAGTAGCAAAGACTCTGTTACGGCATGGTGCAAATCCGGATCTCAGAGATGAAGATGGGAAAACACCATTGGATAAAGCTCGAGAAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp GTTTTCACCTTCGATACATTGTCTATTCGTATGGAGTTCCCAAGATaGCTCCAGCTGAGTTGCTATATTTCTGAGTGTCACTACCACCCC +
Preference number: 5 (lower is better)
Translates to: VFTFDTLSIRMEFPR*LQLSCYISECHYHP
Trigger: GGGGTGGTAGTGACACTCAGAAATATAGCAACTCAGCTGGAGTCATCTTGGGAACTCCATACGAATAGACAATGTATCGAAGGTGAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 90 bp GAGACTCTACACAAATTTCTAAAGAGGAATCCTGAGGCTCCATTTTaGCACAGAGTCTCGATACCACAGCCATCGCAGAGTGTAATGTAT +
Preference number: 5 (lower is better)
Translates to: ETLHKFLKRNPEAPF*HRVSIPQPSQSVMY
Trigger: ATACATTACACTCTGCGATGGCTGTGGTATCGAGACTCTGTGGCAAAATGGAGCCTCAGGATTCCTCTTTAGAAATTTGTGTAGAGTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp AATTGCTACTACTTCACTGTGGCCTCTTTCTCGAGCTTTATCCAATaGTGTTTTCCCATCTTCATCTCTGAGATCCGGATTTGCACCATG +
Preference number: 5 (lower is better)
Translates to: NCYYFTVASFSSFIQ*CFPIFISEIRICTM
Trigger: CATGGTGCAAATCCGGATCTCAGAGATGAAGATGGGAAAACACCATTGGATAAAGCTCGAGAAAGAGGCCACAGTGAAGTAGTAGCAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTACTGCGACCTGGTTaGCATGCTGAAGATGGTCCT +
Preference number: 5 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRVLRPG*HAEDGP
Trigger: AGGACCATCTTCAGCATGCAAACCAGGTCGCAGTAC...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGACAGAGTCTTTGCTACTaGAGGTCTTCCAAAACATGC +
Preference number: 5 (lower is better)
Translates to: FTQTQEASPRLCLFCISRQSLCY*RSSKTC
Trigger: GCATGTTTTGGAAGACCTCAAGTAGCAAAGACTCTG...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGACTGGAGACTGGAGAATaGCTACTACTTCACTGTGGC +
Preference number: 5 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRLETGE*LLLHCG
Trigger: GCCACAGTGAAGTAGTAGCAATTCTCCAGTCTCCAG...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp CATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCATCATCATCATCCTCTaGATCAAGGACAGTTGCAGT +
Preference number: 5 (lower is better)
Translates to: HTLLFTQTQEASPRLCLFIIIIL*IKDSCS
Trigger: ACTGCAACTGTCCTTGATCAAGAGGATGATGATGAT...GAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAAGAGAAGTGTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGCAGCAGCAGACGTCTaGTCTGGACAGTTGTTTTTC +
Preference number: 5 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRAAADV*SGQLFF
Trigger: GAAAAACAACTGTCCAGACAAGACGTCTGCTGCTGC...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATCTTAGGTTCATGTTGTaGGTGGCATTAGTCCGTGCT +
Preference number: 5 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHLRFML*VALVRA
Trigger: AGCACGGACTAATGCCACCAACAACATGAACCTAAG...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAGAATTTCTAGGTCAGTaGTCTGCTGGACATTGGTAC +
Preference number: 5 (lower is better)
Translates to: FTQTQEASPRLCLFCISREFLGQ*SAGHWY
Trigger: GTACCAATGTCCAGCAGACAACTGACCTAGAAATTC...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGATCAGAAAGACTTTTATaGCCTAGAATCTGGCGCCTC +
Preference number: 5 (lower is better)
Translates to: FTQTQEASPRLCLFCISRSERLL*PRIWRL
Trigger: GAGGCGCCAGATTCTAGGCAATAAAAGTCTTTCTGA...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp CTAGAGGTTGATGTGAGGCTGGTGGTTAAAGTATTACTTAATGATTaGCCCACTGATAAAACTGTGGTTGCCGTAGCTACATTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: LEVDVRLVVKVLLND*PTDKTVVAVATLLL
Trigger: CAGCAGCAATGTAGCTACGGCAACCACAGTTTTATCAGTGGGTCAATCATTAAGTAATACTTTAACCACCAGCCTCACATCAACCTCTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGAAGAGGAGACTTACAATaGTCGACACCTGGTTACTCA +
Preference number: 5 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGRGDLQ*STPGYS
Trigger: TGAGTAACCAGGTGTCGACAATTGTAAGTCTCCTCT...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGTTGACCCTGGTTCATaGAGACTGCAGTCATCAACA +
Preference number: 5 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRVDPGS*RLQSST
Trigger: TGTTGATGACTGCAGTCTCAATGAACCAGGGTCAAC...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATAAAGTGTTAGTGTTGTaGTCACTGCTGCTTCGGCTT +
Preference number: 5 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHKVLVL*SLLLRL
Trigger: AAGCCGAAGCAGCAGTGACAACAACACTAACACTTT...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TTCACACAAACACAAGAGGCTTCACCCAGACTCTGTCTCTTCTGCATTTCAAGAATGGTGGATCTGAAATaGGTAAGTGGCAGTTCAACT +
Preference number: 5 (lower is better)
Translates to: FTQTQEASPRLCLFCISRMVDLK*VSGSST
Trigger: AGTTGAACTGCCACTTACCAATTTCAGATCCACCAT...TCTTGAAATGCAGAAGAGACAGAGTCTGGGTGAAGCCTCTTGTGTTTGTGTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp TCAAGGACAGTTGCAGTGATTTCCACTAGTGTTGTGGGCAAATTGTaGCCAACGTCAGAATCACAAACTTCTTTTAACAGTGCTTCAGAG +
Preference number: 5 (lower is better)
Translates to: SRTVAVISTSVVGKL*PTSESQTSFNSASE
Trigger: CTCTGAAGCACTGTTAAAAGAAGTTTGTGATTCTGACGTTGGTCACAATTTGCCCACAACACTAGTGGAAATCACTGCAACTGTCCTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAGTAATGCACTTTCGATaGAATCTGGAAGCTCTGACC +
Preference number: 5 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRVMHFR*NLEALT
Trigger: GGTCAGAGCTTCCAGATTCAATCGAAAGTGCATTAC...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTATCCCCTCTGGGTTCATaGCATTCCTCTTCATCTTTG +
Preference number: 5 (lower is better)
Translates to: FVLSLAAKELIPRVLEALSPLGS*HSSSSL
Trigger: CAAAGATGAAGAGGAATGCAATGAACCCAGAGGGGA...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGAATCATCATCATCCTCTaGATCAAGGACAGTTGCAGT +
Preference number: 5 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGIIIIL*IKDSCS
Trigger: ACTGCAACTGTCCTTGATCAAGAGGATGATGATGAT...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTGGATGAAACAGGTTaGGGTGATGCCACTGTATCA +
Preference number: 5 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRVDETG*GDATVS
Trigger: TGATACAGTGGCATCACCCAAACCTGTTTCATCCAC...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTCTTGTCTGGACAGTaGTTTTTCACCAAGCTGCTC +
Preference number: 5 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRVLSGQ*FFTKLL
Trigger: GAGCAGCTTGGTGAAAAACAACTGTCCAGACAAGAC...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGATGAAAGAACAACAATaGGTTCATGGACATCAGCTC +
Preference number: 5 (lower is better)
Translates to: AAKELIPRVLEALMVENKMKEQQ*VHGHQL
Trigger: GAGCTGATGTCCATGAACCAATTGTTGTTCTTTCAT...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGAATGGTGGATCTGAAATaGGTAAGTGGCAGTTCAACT +
Preference number: 5 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGMVDLK*VSGSST
Trigger: AGTTGAACTGCCACTTACCAATTTCAGATCCACCAT...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp CCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTCTTCTGCATTATCCATaGTTATCATCTCATCTTCCC +
Preference number: 5 (lower is better)
Translates to: PAGWVVKGFVLSLAAKELLLHYP*LSSHLP
Trigger: GGGAAGATGAGATGATAACAATGGATAATGCAGAAG...AAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCAGCCAGCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGCTTCTGCATTATCCATaGTTATCATCTCATCTTCCC +
Preference number: 5 (lower is better)
Translates to: AAKELIPRVLEALMVENKLLHYP*LSSHLP
Trigger: GGGAAGATGAGATGATAACAATGGATAATGCAGAAG...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp ATATATAAGCAGTCCCTTCCTCTAATTATTGACCAGTCTCTCCAATaGTACGGTTTACCTTGCTGCAATTCCTTAGCATCTTCCTGTGGT +
Preference number: 5 (lower is better)
Translates to: IYKQSLPLIIDQSLQ*YGLPCCNSLASSCG
Trigger: ACCACAGGAAGATGCTAAGGAATTGCAGCAAGGTAAACCGTATCATTGGAGAGACTGGTCAATAATTAGAGGAAGGGACTGCTTATATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp GACGAAGTGTGTATGCTGAAGGTATTACCCAGACACCCAGATCTATaGCAAACCAGGCATTTTTATCATCATTGCTGTGACAATTTAAAG +
Preference number: 5 (lower is better)
Translates to: DEVCMLKVLPRHPDL*QTRHFYHHCCDNLK
Trigger: CTTTAAATTGTCACAGCAATGATGATAAAAATGCCTGGTTTGCCATAGATCTGGGTGTCTGGGTAATACCTTCAGCATACACACTTCGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAAAACAGCGATCCACATaGTCAGACATCAAAAGCAGC +
Preference number: 5 (lower is better)
Translates to: FVLSLAAKELIPRVLEALKQRST*SDIKSS
Trigger: GCTGCTTTTGATGTCTGACAATGTGGATCGCTGTTT...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGAATGAAAGAACAACAATaGGTTCATGGACATCAGCTC +
Preference number: 5 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGMKEQQ*VHGHQL
Trigger: GAGCTGATGTCCATGAACCAATTGTTGTTCTTTCAT...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGAAGAATATCACTACTTaGAAGACTAGAAATAGCCCC +
Preference number: 5 (lower is better)
Translates to: AAKELIPRVLEALMVENKKNITT*KTRNSP
Trigger: GGGGCTATTTCTAGTCTTCAAAGTAGTGATATTCTT...CTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTTCATCAAGGAAAATTTaGCAGAGAGCTGGCAGGAAA +
Preference number: 5 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRSSRKI*QRAGRK
Trigger: TTTCCTGCCAGCTCTCTGCAAAATTTTCCTTGATGA...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAACATCATCCATAAAATaGACTTCAAAGGCTCCTGTG +
Preference number: 5 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRTSSIK*TSKAPV
Trigger: CACAGGAGCCTTTGAAGTCAATTTTATGGATGATGT...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042052.9
CDS-3UTR CAA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGATTCGTACCTTTTGCTTaGTTTTCTCCAACTTGGATT +
Preference number: 5 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGFVPFA*FSPTWI
Trigger: AATCCAAGTTGGAGAAAACAAAGCAAAAGGTACGAA...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGACTCATCAAAGTCATGTaGGTGCCGGAATATAAAATT +
Preference number: 5 (lower is better)
Translates to: TCSRSLNGGKQGKCHYCGLIKVM*VPEYKI
Trigger: AATTTTATATTCCGGCACCAACATGACTTTGATGAG...TCCACAATAATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp ACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATCTCATCAAAGTCATGTaGGTGCCGGAATATAAAATT +
Preference number: 5 (lower is better)
Translates to: TYSTCSRSLNGGKQGKCHLIKVM*VPEYKI
Trigger: AATTTTATATTCCGGCACCAACATGACTTTGATGAG...ATGACACTTGCCTTGTTTTCCACCATTAAGGCTTCGAGAACACGTGGAATAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 90 bp ATACATGATTGTGTAAGTGGGCTCCCAAATACGCCTAAGTTTATCTaGCTTCACATTGCCATTACAAGACAGTTGAAGCAGTTTTTGTAC +
Preference number: 5 (lower is better)
Translates to: IHDCVSGLPNTPKFI*LHIAITRQLKQFLY
Trigger: GTACAAAAACTGCTTCAACTGTCTTGTAATGGCAATGTGAAGTCAGATAAACTTAGGCGTATTTGGGAGCCCACTTACACAATCATGTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp GTAGCCCTAAATATACTTACATTGTTTAGAACAGTAAGAAGTGCCTaGACTAAACCACTACTACACATTTCATACGGTGAGATCGTGTTC +
Preference number: 5 (lower is better)
Translates to: VALNILTLFRTVRSA*TKPLLHISYGEIVF
Trigger: GAACACGATCTCACCGTATGAAATGTGTAGTAGTGGTTTAGTCCAGGCACTTCTTACTGTTCTAAACAATGTAAGTATATTTAGGGCTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTTTCTCCAACTTGGATTaGAGTTTTCTGCCTCTTTTG +
Preference number: 5 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRFSNLD*SFLPLL
Trigger: CAAAAGAGGCAGAAAACTCAAATCCAAGTTGGAGAA...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGACATAGTTCGTACCTTTaGCTTTGTTTTCTCCAACTT +
Preference number: 5 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRHSSYL*LCFLQL
Trigger: AAGTTGGAGAAAACAAAGCAAAAGGTACGAACTATG...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAGAAGCTGCTTCCTTATaGGTTAATTCAGATACCGAA +
Preference number: 5 (lower is better)
Translates to: FVLSLAAKELIPRVLEALEAASL*VNSDTE
Trigger: TTCGGTATCTGAATTAACCAATAAGGAAGCAGCTTC...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp GACAAACTTGATACAAACACGGTTCCATTTACAGTGAGCACTGATGATCTGAGAATTAGTTTGCTCATATaGCTTTTAATGTCGCCCATG +
Preference number: 5 (lower is better)
Translates to: DKLDTNTVPFTVSTDDLRISLLI*LLMSPM
Trigger: CATGGGCGACATTAAAAGCAATATGAGCAAACTAAT...TCTCAGATCATCAGTGCTCACTGTAAATGGAACCGTGTTTGTATCAAGTTTGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAACATCATCCATAAAATaGACTTCAAAGGCTGCTCCT +
Preference number: 5 (lower is better)
Translates to: FVLSLAAKELIPRVLEALTSSIK*TSKAAP
Trigger: AGGAGCAGCCTTTGAAGTCAATTTTATGGATGATGT...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTCATAGTTCGTACCTTTaGCTTTGTTTTCTCCAACTT +
Preference number: 5 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRHSSYL*LCFLQL
Trigger: AAGTTGGAGAAAACAAAGCAAAAGGTACGAACTATG...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTATTCATACGCAGTTTTaGCATTTGTTCCAATCCAGT +
Preference number: 5 (lower is better)
Translates to: WVVKGFVLSLAAKELIPRIHTQF*HLFQSS
Trigger: ACTGGATTGGAACAAATGCAAAAACTGCGTATGAAT...ACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAACCCTTTAACTACCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS-3UTR CAA 90 bp TTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAGCCATTACAAGACAGTaGAAGCAGTTTTTGTACATA +
Preference number: 5 (lower is better)
Translates to: FVLSLAAKELIPRVLEALAITRQ*KQFLYI
Trigger: TATGTACAAAAACTGCTTCAACTGTCTTGTAATGGC...TAAGGCTTCGAGAACACGTGGAATAAGTTCCTTAGCTGCTAATGACAAAACAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 90 bp TTCATATCCAAATCTATACTATTGTTTAGAACAGTAAGAAGTGCCTaGACTAAACCACTACTACACATTTCATACGGTGAGATCGTGTTC +
Preference number: 5 (lower is better)
Translates to: FISKSILLFRTVRSA*TKPLLHISYGEIVF
Trigger: GAACACGATCTCACCGTATGAAATGTGTAGTAGTGGTTTAGTCCAGGCACTTCTTACTGTTCTAAACAATAGTATAGATTTGGATATGAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042052.9
CDS GCA 72 bp AGGTACACTCGCACTGGAGCTCATAGGGGCCCCGGCTaGCAACAGAGAGCTCACCGACAGTCTGTTACTTGC +
Preference number: 6 (lower is better)
Translates to: RYTRTGAHRGPG*QQRAHRQSVTC
Trigger: GCAAGTAACAGACTGTCGGTGAGCTCTCTGTTGGCAGCCGGGGCCCCTATGAGCTCCAGTGCGAGTGTACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp GCCGTACACTGCTCGTGGTCCGAGTTCGCTCCACAGTaGCTTCCCGCCTGTTCTGTAGCCACACTATTGCTC +
Preference number: 6 (lower is better)
Translates to: AVHCSWSEFAPQ*LPACSVATLLL
Trigger: GAGCAATAGTGTGGCTACAGAACAGGCGGGAAGCCACTGTGGAGCGAACTCGGACCACGAGCAGTGTACGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp GAATCTGCAGCAGCAGAGGGGGCTCCTGTGGTACTGCGACCTGGTTaGCATGCTGAAGATGGTCCTGATACAGTACCACCAGCCGCTGCC +
Preference number: 6 (lower is better)
Translates to: ESAAAEGAPVVLRPG*HAEDGPDTVPPAAA
Trigger: GGCAGCGGCTGGTGGTACTGTATCAGGACCATCTTCAGCATGCAAACCAGGTCGCAGTACCACAGGAGCCCCCTCTGCTGCTGCAGATTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp CCTGTGACTGTGCCTTCTCCCTGCGGGCTGCCATCCTaGTCTCGCCACTTCCAATCAAGGCCCCTGATAACA +
Preference number: 6 (lower is better)
Translates to: PVTVPSPCGLPS*SRHFQSRPLIT
Trigger: TGTTATCAGGGGCCTTGATTGGAAGTGGCGAGATCAGGATGGCAGCCCGCAGGGAGAAGGCACAGTCACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp CCACTGGCGTTCTTCCCCATCTGCTTCAGCCTGACATaGCGCCACCCTTGCTTTTCATCCTTCGCTGGGTCA +
Preference number: 6 (lower is better)
Translates to: PLAFFPICFSLT*RHPCFSSFAGS
Trigger: TGACCCAGCGAAGGATGAAAAGCAAGGGTGGCGGCATGTCAGGCTGAAGCAGATGGGGAAGAACGCCAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp TGTCGCTGCTACTGGCCACGCTACACACAGAGCTGCTaGTCCCTTTTCTACTTGAGGAGCCTGCAGCAGCAG +
Preference number: 6 (lower is better)
Translates to: CRCYWPRYTQSC*SLFYLRSLQQQ
Trigger: CTGCTGCTGCAGGCTCCTCAAGTAGAAAAGGGAGCAGCAGCTCTGTGTGTAGCGTGGCCAGTAGCAGCGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp TGGTGTGTTACGTCAGAGCGAGAGCCAGCTCGGCGTTaGAGGGAGGGACGTCTCAGAATCATAACCTCCTCG +
Preference number: 6 (lower is better)
Translates to: WCVTSEREPARR*REGRLRIITSS
Trigger: CGAGGAGGTTATGATTCTGAGACGTCCCTCCCTGCAACGCCGAGCTGGCTCTCGCTCTGACGTAACACACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp CCAGCCGCTGCCATTCGAGACAACAGCTCCTCAGTTAATCCATGCTaGGCCAATGGAGCTGGGTCTACCCCACGACGAGTAAACCGGTCA +
Preference number: 6 (lower is better)
Translates to: PAAAIRDNSSSVNPC*ANGAGSTPRRVNRS
Trigger: TGACCGGTTTACTCGTCGTGGGGTAGACCCAGCTCCATTGGCCAAGCATGGATTAACTGAGGAGCTGTTGTCTCGAATGGCAGCGGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp TCTGTCCACTGGCGTTCTTCCCCATCTGCTTCAGCCTaGCATGCCGCCACCCTTGCTTTTCATCCTTCGCTG +
Preference number: 6 (lower is better)
Translates to: SVHWRSSPSASA*HAATLAFHPSL
Trigger: CAGCGAAGGATGAAAAGCAAGGGTGGCGGCATGTCAGGCTGAAGCAGATGGGGAAGAACGCCAGTGGACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp CAGCAGAGGGGGCTCCTGTGGTACTGCGACCTGGTTTaGATGCTGAAGATGGTCCTGATACAGTACCACCAG +
Preference number: 6 (lower is better)
Translates to: QQRGLLWYCDLV*MLKMVLIQYHQ
Trigger: CTGGTGGTACTGTATCAGGACCATCTTCAGCATGCAAACCAGGTCGCAGTACCACAGGAGCCCCCTCTGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp GCAGCAGAGGGGGCTCCTGTGGTACTGCGACCTGGTTaGCATGCTGAAGATGGTCCTGATACAGTACCACCA +
Preference number: 6 (lower is better)
Translates to: AAEGAPVVLRPG*HAEDGPDTVPP
Trigger: TGGTGGTACTGTATCAGGACCATCTTCAGCATGCAAACCAGGTCGCAGTACCACAGGAGCCCCCTCTGCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp CCACGCTACACACAGAGCTGCTGCTCCCTTTTCTACTaGAGGAGCCTGCAGCAGCAGACGTCTTGTCTGGAC +
Preference number: 6 (lower is better)
Translates to: PRYTQSCCSLFY*RSLQQQTSCLD
Trigger: GTCCAGACAAGACGTCTGCTGCTGCAGGCTCCTCAAGTAGAAAAGGGAGCAGCAGCTCTGTGTGTAGCGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp ATGGTGTGTTACGTCAGAGCGAGAGCCAGCTCGGCGTaGCAGGGAGGGACGTCTCAGAATCATAACCTCCTC +
Preference number: 6 (lower is better)
Translates to: MVCYVRARASSA*QGGTSQNHNLL
Trigger: GAGGAGGTTATGATTCTGAGACGTCCCTCCCTGCAACGCCGAGCTGGCTCTCGCTCTGACGTAACACACCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp GGTGACGACATGGTGTGTTACGTCAGAGCGAGAGCCAGCTCGGCGTaGCAGGGAGGGACGTCTCAGAATCATAACCTCCTCGTATTCTTG +
Preference number: 6 (lower is better)
Translates to: GDDMVCYVRARASSA*QGGTSQNHNLLVFL
Trigger: CAAGAATACGAGGAGGTTATGATTCTGAGACGTCCCTCCCTGCAACGCCGAGCTGGCTCTCGCTCTGACGTAACACACCATGTCGTCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp CACGCTACACACAGAGCTGCTGCTCCCTTTTCTACTTaGGGAGCCTGCAGCAGCAGACGTCTTGTCTGGACA +
Preference number: 6 (lower is better)
Translates to: HATHRAAAPFST*GACSSRRLVWT
Trigger: TGTCCAGACAAGACGTCTGCTGCTGCAGGCTCCTCAAGTAGAAAAGGGAGCAGCAGCTCTGTGTGTAGCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp GCTGCCATTCGAGACAACAGCTCCTCAGTTAATCCATaGTTGGCCAATGGAGCTGGGTCTACCCCACGACGA +
Preference number: 6 (lower is better)
Translates to: AAIRDNSSSVNP*LANGAGSTPRR
Trigger: TCGTCGTGGGGTAGACCCAGCTCCATTGGCCAAGCATGGATTAACTGAGGAGCTGTTGTCTCGAATGGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp TGGAATCTGCAGCAGCAGAGGGGGCTCCTGTGGTACTaGGACCTGGTTTGCATGCTGAAGATGGTCCTGATA +
Preference number: 6 (lower is better)
Translates to: WNLQQQRGLLWY*DLVCMLKMVLI
Trigger: TATCAGGACCATCTTCAGCATGCAAACCAGGTCGCAGTACCACAGGAGCCCCCTCTGCTGCTGCAGATTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp GCTGCCTCGTCTCGAATGGGATCAGGAAAGGACACTTaGTGGTTAACTGTTCACACCAGTCTGGCAGAGCCC +
Preference number: 6 (lower is better)
Translates to: AASSRMGSGKDT*WLTVHTSLAEP
Trigger: GGGCTCTGCCAGACTGGTGTGAACAGTTAACCAGCAAGTGTCCTTTCCTGATCCCATTCGAGACGAGGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp CCACTTCCAATCAAGGCCCCTGATAACACGTGCTCCTaGAACCATGTACTTGAGGACCTGAGAGCGCACCAG +
Preference number: 6 (lower is better)
Translates to: PLPIKAPDNTCS*NHVLEDLRAHQ
Trigger: CTGGTGCGCTCTCAGGTCCTCAAGTACATGGTTCCAGGAGCACGTGTTATCAGGGGCCTTGATTGGAAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp GCCTCGTCTCGAATGGGATCAGGAAAGGACACTTGCTaGTTAACTGTTCACACCAGTCTGGCAGAGCCCCAC +
Preference number: 6 (lower is better)
Translates to: ASSRMGSGKDTC*LTVHTSLAEPH
Trigger: GTGGGGCTCTGCCAGACTGGTGTGAACAGTTAACCAGCAAGTGTCCTTTCCTGATCCCATTCGAGACGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp GTCAGTTTCGTGGGTCCCGGTGCTGACAGTATAGGTTaGCTTGAAGTAGATGGCTTTACTTGGCCCCGGGCT +
Preference number: 6 (lower is better)
Translates to: VSFVGPGADSIG*LEVDGFTWPRA
Trigger: AGCCCGGGGCCAAGTAAAGCCATCTACTTCAAGTCAACCTATACTGTCAGCACCGGGACCCACGAAACTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp TTTCTGATCTCCGTTCCGTTTTGGTCGAAGCCAAGCTaGTGTCGCTGCTACTGGCCACGCTACACACAGAGC +
Preference number: 6 (lower is better)
Translates to: FLISVPFWSKPS*CRCYWPRYTQS
Trigger: GCTCTGTGTGTAGCGTGGCCAGTAGCAGCGACATCAGCTTGGCTTCGACCAAAACGGAACGGAGATCAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp CTTCCCGCGTTGTTCCAAGCCCCGTCACTTTCAGTGTaGGAGCCAAGCGAGGTGACGGAGTACATTCAACTT +
Preference number: 6 (lower is better)
Translates to: LPALFQAPSLSV*EPSEVTEYIQL
Trigger: AAGTTGAATGTACTCCGTCACCTCGCTTGGCTCTCACACTGAAAGTGACGGGGCTTGGAACAACGCGGGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp GGATCACTTGCAACTATATACAGAATCCGCAGAAGCTaGAGGACGTCCTCTACTCCACAGGGGCTCTGCCCG +
Preference number: 6 (lower is better)
Translates to: GSLATIYRIRRS*RTSSTPQGLCP
Trigger: CGGGCAGAGCCCCTGTGGAGTAGAGGACGTCCTTCAGCTTCTGCGGATTCTGTATATAGTTGCAAGTGATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp CCTCGAGAACTGACTTCCGATCTGCGTGTATCTGCATaGCATTCTCGGCCCACTCCATCAGAGACTCTCCAC +
Preference number: 6 (lower is better)
Translates to: PRELTSDLRVSA*HSRPTPSETLH
Trigger: GTGGAGAGTCTCTGATGGAGTGGGCCGAGAATGTCATGCAGATACACGCAGATCGGAAGTCAGTTCTCGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp AGGGAGTCATGGCCTTCTTCTGTAGAAGCTTCCGACTaGCTTTCAGTACAGTGCAAGTCTCTGTCGCCGCGG +
Preference number: 6 (lower is better)
Translates to: RESWPSSVEASD*LSVQCKSLSPR
Trigger: CCGCGGCGACAGAGACTTGCACTGTACTGAAAGTCAGTCGGAAGCTTCTACAGAAGAAGGCCATGACTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp AGCTCCATCCACCCCTACTATCCTCCGGGTGCATTCTaGAGAAACATCCAGGTAGTATGTTATGGCACGGGC +
Preference number: 6 (lower is better)
Translates to: SSIHPYYPPGAF*RNIQVVCYGTG
Trigger: GCCCGTGCCATAACATACTACCTGGATGTTTCTGCAGAATGCACCCGGAGGATAGTAGGGGTGGATGGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp AACCACCAGCCTCAAAGACTGCCCCTGACTCACGCGTaGAGATCAGTTCCAGCACCTTTACACACTGTTCAG +
Preference number: 6 (lower is better)
Translates to: NHQPQRLPLTHA*RSVPAPLHTVQ
Trigger: CTGAACAGTGTGTAAAGGTGCTGGAACTGATCTGCACGCGTGAGTCAGGGGCAGTCTTTGAGGCTGGTGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp ATCTCGCCACTTCCAATCAAGGCCCCTGATAACACGTaGTCCTGGAACCATGTACTTGAGGACCTGAGAGCG +
Preference number: 6 (lower is better)
Translates to: ISPLPIKAPDNT*SWNHVLEDLRA
Trigger: CGCTCTCAGGTCCTCAAGTACATGGTTCCAGGAGCACGTGTTATCAGGGGCCTTGATTGGAAGTGGCGAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp GACGTCCTCTACTCCACAGGGGCTCTGCCCGTTGCCTaGTTTAGCCTGAGGCTGCTCTTTTGTCAAATTAAG +
Preference number: 6 (lower is better)
Translates to: DVLYSTGALPVA*FSLRLLFCQIK
Trigger: CTTAATTTGACAAAAGAGCAGCCTCAGGCTAAAGCAGGCAACGGGCAGAGCCCCTGTGGAGTAGAGGACGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp TCAATTTGGAATCTGCAGCAGCAGAGGGGGCTCCTGTaGTACTGCGACCTGGTTTGCATGCTGAAGATGGTC +
Preference number: 6 (lower is better)
Translates to: SIWNLQQQRGLL*YCDLVCMLKMV
Trigger: GACCATCTTCAGCATGCAAACCAGGTCGCAGTACCACAGGAGCCCCCTCTGCTGCTGCAGATTCCAAATTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp TGGTTAACTGTTCACACCAGTCTGGCAGAGCCCCACTaGCCAGTGCCAACGGTTCCTCAATCTGCTGCAAAA +
Preference number: 6 (lower is better)
Translates to: WLTVHTSLAEPH*PVPTVPQSAAK
Trigger: TTTTGCAGCAGATTGAGGAACCGTTGGCACTGGCCAGTGGGGCTCTGCCAGACTGGTGTGAACAGTTAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp GCCATTCGAGACAACAGCTCCTCAGTTAATCCATGCTaGGCCAATGGAGCTGGGTCTACCCCACGACGAGTA +
Preference number: 6 (lower is better)
Translates to: AIRDNSSSVNPC*ANGAGSTPRRV
Trigger: TACTCGTCGTGGGGTAGACCCAGCTCCATTGGCCAAGCATGGATTAACTGAGGAGCTGTTGTCTCGAATGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp AGCTGCCTCGTCTCGAATGGGATCAGGAAAGGACACTaGCTGGTTAACTGTTCACACCAGTCTGGCAGAGCC +
Preference number: 6 (lower is better)
Translates to: SCLVSNGIRKGH*LVNCSHQSGRA
Trigger: GGCTCTGCCAGACTGGTGTGAACAGTTAACCAGCAAGTGTCCTTTCCTGATCCCATTCGAGACGAGGCAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp TGCTACTGGCCACGCTACACACAGAGCTGCTGCTCCCTTTTCTACTaGAGGAGCCTGCAGCAGCAGACGTCTTGTCTGGACAGTTGTTTT +
Preference number: 6 (lower is better)
Translates to: CYWPRYTQSCCSLFY*RSLQQQTSCLDSCF
Trigger: AAAACAACTGTCCAGACAAGACGTCTGCTGCTGCAGGCTCCTCAAGTAGAAAAGGGAGCAGCAGCTCTGTGTGTAGCGTGGCCAGTAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp ATAACACGTGCTCCTGGAACCATGTACTTGAGGACCTaGGAGCGCACCAGGCGCCTCTGCCTTCTAAGATTA +
Preference number: 6 (lower is better)
Translates to: ITRAPGTMYLRT*ERTRRLCLLRL
Trigger: TAATCTTAGAAGGCAGAGGCGCCTGGTGCGCTCTCAGGTCCTCAAGTACATGGTTCCAGGAGCACGTGTTAT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp ACTGTCCTGTGGGAATGGCGCTGTGAACAGTCCACATaGCCGCTGTACATAGTATCCTGGAGGCTTCAATCC +
Preference number: 6 (lower is better)
Translates to: TVLWEWRCEQST*PLYIVSWRLQS
Trigger: GGATTGAAGCCTCCAGGATACTATGTACAGCGGTCATGTGGACTGTTCACAGCGCCATTCCCACAGGACAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp TACAATTGTCGACACCTGGTTACTCAATTTGGAATCTaGAGCAGCAGAGGGGGCTCCTGTGGTACTGCGACC +
Preference number: 6 (lower is better)
Translates to: YNCRHLVTQFGI*SSRGGSCGTAT
Trigger: GGTCGCAGTACCACAGGAGCCCCCTCTGCTGCTGCAGATTCCAAATTGAGTAACCAGGTGTCGACAATTGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp CCACCTGGGGGCAGAGTTGAACAGCCAGTGGTAAACTaGAGGAATGCTTTCCTTTCATCTGAGGACATGCCA +
Preference number: 6 (lower is better)
Translates to: PPGGRVEQPVVN*RNAFLSSEDMP
Trigger: TGGCATGTCCTCAGATGAAAGGAAAGCATTCCTGCAGTTTACCACTGGCTGTTCAACTCTGCCCCCAGGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp GAGGAGCCTGCAGCAGCAGACGTCTTGTCTGGACAGTaGTTTTTCACCAAGCTGCTCCATGATTGCGTTGTG +
Preference number: 6 (lower is better)
Translates to: EEPAAADVLSGQ*FFTKLLHDCVV
Trigger: CACAACGCAATCATGGAGCAGCTTGGTGAAAAACAACTGTCCAGACAAGACGTCTGCTGCTGCAGGCTCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp GGGGGAGGAATTTCTAGGTCAGTTGTCTGCTGGACATaGGTACGACCAGGTCTAGGATCAAAAGCAGGGACC +
Preference number: 6 (lower is better)
Translates to: GGGISRSVVCWT*VRPGLGSKAGT
Trigger: GGTCCCTGCTTTTGATCCTAGACCTGGTCGTACCAATGTCCAGCAGACAACTGACCTAGAAATTCCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp AGCGTTGAGAGGAGACTTACAATTGTCGACACCTGGTTACTCAATTaGGAATCTGCAGCAGCAGAGGGGGCTCCTGTGGTACTGCGACCT +
Preference number: 6 (lower is better)
Translates to: SVERRLTIVDTWLLN*ESAAAEGAPVVLRP
Trigger: AGGTCGCAGTACCACAGGAGCCCCCTCTGCTGCTGCAGATTCCAAATTGAGTAACCAGGTGTCGACAATTGTAAGTCTCCTCTCAACGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp CTGCTCCATGATTGCGTTGTGCCTGAAACAGTGGATGAAACAGGTTaGGGTGATGCCACTGTATCAGGGTCGTACCCTGGTGCAAGCTTG +
Preference number: 6 (lower is better)
Translates to: LLHDCVVPETVDETG*GDATVSGSYPGASL
Trigger: CAAGCTTGCACCAGGGTACGACCCTGATACAGTGGCATCACCCAAACCTGTTTCATCCACTGTTTCAGGCACAACGCAATCATGGAGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp GGTGTTCCTGGGGGAGGAATTTCTAGGTCAGTTGTCTGCTGGACATaGGTACGACCAGGTCTAGGATCAAAAGCAGGGACCAGTGCAGAA +
Preference number: 6 (lower is better)
Translates to: GVPGGGISRSVVCWT*VRPGLGSKAGTSAE
Trigger: TTCTGCACTGGTCCCTGCTTTTGATCCTAGACCTGGTCGTACCAATGTCCAGCAGACAACTGACCTAGAAATTCCTCCCCCAGGAACACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp CTGCTGCTCCCTTTTCTACTTGAGGAGCCTGCAGCAGCAGACGTCTaGTCTGGACAGTTGTTTTTCACCAAGCTGCTCCATGATTGCGTT +
Preference number: 6 (lower is better)
Translates to: LLLPFLLEEPAAADV*SGQLFFTKLLHDCV
Trigger: AACGCAATCATGGAGCAGCTTGGTGAAAAACAACTGTCCAGACAAGACGTCTGCTGCTGCAGGCTCCTCAAGTAGAAAAGGGAGCAGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp GGAGAAGTTGCGGTGCTCATCACGTTCCTCCCCAAAGTGTTAGTGTaGTTGTCACTGCTGCTTCGGCTTAGGTTCATGTTGTTGGTGGCA +
Preference number: 6 (lower is better)
Translates to: GEVAVLITFLPKVLV*LSLLLRLRFMLLVA
Trigger: TGCCACCAACAACATGAACCTAAGCCGAAGCAGCAGTGACAACAACACTAACACTTTGGGGAGGAACGTGATGAGCACCGCAACTTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp AACACAATTCAAACCACCAGCCTCAAAGACTGCCCCTaGCTCACGCGTGCAGATCAGTTCCAGCACCTTTAC +
Preference number: 6 (lower is better)
Translates to: NTIQTTSLKDCP*LTRADQFQHLY
Trigger: GTAAAGGTGCTGGAACTGATCTGCACGCGTGAGTCAGGGGCAGTCTTTGAGGCTGGTGGTTTGAATTGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp AGCGGCCATAGGGCAGATTCCTTCCTTCTGATGATGTaGCGACTACGAGTCCATAAGCTGCAGGATTTACCC +
Preference number: 6 (lower is better)
Translates to: SGHRADSFLLMM*RLRVHKLQDLP
Trigger: GGGTAAATCCTGCAGCTTATGGACTCGTAGTCGTCACATCATCAGAAGGAAGGAATCTGCCCTATGGCCGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp GTCAAATTTTCCTTCTGCGCCCATACGGTAAGAGTTTaGGCCACCAGCATCCCAGGTGACATCAATCCAGCC +
Preference number: 6 (lower is better)
Translates to: VKFSFCAHTVRV*ATSIPGDINPA
Trigger: GGCTGGATTGATGTCACCTGGGATGCTGGTGGCTCAAACTCTTACCGTATGGGCGCAGAAGGAAAATTTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp CGATGCTCAGTGGAGGTCCCGAGCCTGATGGATTCCTaGGCACGAGTTCCTGTAACTTTGTGTTCTTCTCAT +
Preference number: 6 (lower is better)
Translates to: RCSVEVPSLMDS*ARVPVTLCSSH
Trigger: ATGAGAAGAACACAAAGTTACAGGAACTCGTGCTCAGGAATCCATCAGGCTCGGGACCTCCACTGAGCATCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp TGCAAACACTGGCAGCAACCTCTTCAAGTAGAGCGGTaGCATTTCTGGATCCCCTCTGGGTTCATTGCATTC +
Preference number: 6 (lower is better)
Translates to: CKHWQQPLQVER*HFWIPSGFIAF
Trigger: GAATGCAATGAACCCAGAGGGGATCCAGAAATGGCACCGCTCTACTTGAAGAGGTTGCTGCCAGTGTTTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp TTTCCGCATTTTCACTTCCCGTTTCCGCTGTTAGGGTaGTGGTGCTTGCACTGGAAGATGACCCTACTTCTG +
Preference number: 6 (lower is better)
Translates to: FPHFHFPFPLLG*WCLHWKMTLLL
Trigger: CAGAAGTAGGGTCATCTTCCAGTGCAAGCACCAGCACCCTAACAGCGGAAACGGGAAGTGAAAATGCGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp ATCAGAGACTCTCCACGGGGAACTTTCACTCTTTCGTaGTTGAGGCGACCCACTCTAAATTCCCCAGGATCA +
Preference number: 6 (lower is better)
Translates to: IRDSPRGTFTLS*LRRPTLNSPGS
Trigger: TGATCCTGGGGAATTTAGAGTGGGTCGCCTCAAGCACGAAAGAGTGAAAGTTCCCCGTGGAGAGTCTCTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp GGAGACTTACAATTGTCGACACCTGGTTACTCAATTTaGAATCTGCAGCAGCAGAGGGGGCTCCTGTGGTAC +
Preference number: 6 (lower is better)
Translates to: GDLQLSTPGYSI*NLQQQRGLLWY
Trigger: GTACCACAGGAGCCCCCTCTGCTGCTGCAGATTCCAAATTGAGTAACCAGGTGTCGACAATTGTAAGTCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp TGGCAGCAACCTCTTCAAGTAGAGCGGTGCCATTTCTaGATCCCCTCTGGGTTCATTGCATTCCTCTTCATC +
Preference number: 6 (lower is better)
Translates to: WQQPLQVERCHF*IPSGFIAFLFI
Trigger: GATGAAGAGGAATGCAATGAACCCAGAGGGGATCCAGAAATGGCACCGCTCTACTTGAAGAGGTTGCTGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp ATTGCGTTGTGCCTGAAACAGTGGATGAAACAGGTTTaGGTGATGCCACTGTATCAGGGTCGTACCCTGGTG +
Preference number: 6 (lower is better)
Translates to: IALCLKQWMKQV*VMPLYQGRTLV
Trigger: CACCAGGGTACGACCCTGATACAGTGGCATCACCCAAACCTGTTTCATCCACTGTTTCAGGCACAACGCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp CCGCATTTTCACTTCCCGTTTCCGCTGTTAGGGTGCTaGTGCTTGCACTGGAAGATGACCCTACTTCTGTTT +
Preference number: 6 (lower is better)
Translates to: PHFHFPFPLLGC*CLHWKMTLLLF
Trigger: AAACAGAAGTAGGGTCATCTTCCAGTGCAAGCACCAGCACCCTAACAGCGGAAACGGGAAGTGAAAATGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp GATTGCGTTGTGCCTGAAACAGTGGATGAAACAGGTTaGGGTGATGCCACTGTATCAGGGTCGTACCCTGGT +
Preference number: 6 (lower is better)
Translates to: DCVVPETVDETG*GDATVSGSYPG
Trigger: ACCAGGGTACGACCCTGATACAGTGGCATCACCCAAACCTGTTTCATCCACTGTTTCAGGCACAACGCAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp TTTCACTTCCCGTTTCCGCTGTTAGGGTGCTGGTGCTaGCACTGGAAGATGACCCTACTTCTGTTTGAGGGA +
Preference number: 6 (lower is better)
Translates to: FHFPFPLLGCWC*HWKMTLLLFEG
Trigger: TCCCTCAAACAGAAGTAGGGTCATCTTCCAGTGCAAGCACCAGCACCCTAACAGCGGAAACGGGAAGTGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp GCGGTGCTCATCACGTTCCTCCCCAAAGTGTTAGTGTaGTTGTCACTGCTGCTTCGGCTTAGGTTCATGTTG +
Preference number: 6 (lower is better)
Translates to: AVLITFLPKVLV*LSLLLRLRFML
Trigger: CAACATGAACCTAAGCCGAAGCAGCAGTGACAACAACACTAACACTTTGGGGAGGAACGTGATGAGCACCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp AGAGACTCTCCACGGGGAACTTTCACTCTTTCGTGCTaGAGGCGACCCACTCTAAATTCCCCAGGATCATCT +
Preference number: 6 (lower is better)
Translates to: RDSPRGTFTLSC*RRPTLNSPGSS
Trigger: AGATGATCCTGGGGAATTTAGAGTGGGTCGCCTCAAGCACGAAAGAGTGAAAGTTCCCCGTGGAGAGTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp TTTCCGCATTTTCACTTCCCGTTTCCGCTGTTAGGGTGCTGGTGCTaGCACTGGAAGATGACCCTACTTCTGTTTGAGGGACGTTTTCAG +
Preference number: 6 (lower is better)
Translates to: FPHFHFPFPLLGCWC*HWKMTLLLFEGRFQ
Trigger: CTGAAAACGTCCCTCAAACAGAAGTAGGGTCATCTTCCAGTGCAAGCACCAGCACCCTAACAGCGGAAACGGGAAGTGAAAATGCGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp TCTCCTGACAAAGCTCTCCAAGCTAGATGTCTCTCTTaGGGACAGGTTAGGTACACTCGCACTGGAGCTCAT +
Preference number: 6 (lower is better)
Translates to: SPDKALQARCLS*GQVRYTRTGAH
Trigger: ATGAGCTCCAGTGCGAGTGTACCTAACCTGTCCTCAAGAGAGACATCTAGCTTGGAGAGCTTTGTCAGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp CATTTTCACTTCCCGTTTCCGCTGTTAGGGTGCTGGTaGTTGCACTGGAAGATGACCCTACTTCTGTTTGAG +
Preference number: 6 (lower is better)
Translates to: HFHFPFPLLGCW*LHWKMTLLLFE
Trigger: CTCAAACAGAAGTAGGGTCATCTTCCAGTGCAAGCACCAGCACCCTAACAGCGGAAACGGGAAGTGAAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp GGTGTTCCTGGGGGAGGAATTTCTAGGTCAGTTGTCTaGTGGACATTGGTACGACCAGGTCTAGGATCAAAA +
Preference number: 6 (lower is better)
Translates to: GVPGGGISRSVV*WTLVRPGLGSK
Trigger: TTTTGATCCTAGACCTGGTCGTACCAATGTCCAGCAGACAACTGACCTAGAAATTCCTCCCCCAGGAACACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp GGGTGCATTCTGCAGAAACATCCAGGTAGTATGTTATaGCACGGGCTGTCACCTCTAAGACATTGTCTGGAG +
Preference number: 6 (lower is better)
Translates to: GCILQKHPGSML*HGLSPLRHCLE
Trigger: CTCCAGACAATGTCTTAGAGGTGACAGCCCGTGCCATAACATACTACCTGGATGTTTCTGCAGAATGCACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp ACCACCCCACGAGGCATGCTTTCAACAGCTTTAAAGTaGTCGTCATACAAGTCTCGAGCCATAGTTCGTACC +
Preference number: 6 (lower is better)
Translates to: TTPRGMLSTALK*SSYKSRAIVRT
Trigger: GGTACGAACTATGGCTCGAGACTTGTATGACGACCACTTTAAAGCTGTTGAAAGCATGCCTCGTGGGGTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp CCAAGCTGCTCCATGATTGCGTTGTGCCTGAAACAGTaGATGAAACAGGTTTGGGTGATGCCACTGTATCAG +
Preference number: 6 (lower is better)
Translates to: PSCSMIALCLKQ*MKQVWVMPLYQ
Trigger: CTGATACAGTGGCATCACCCAAACCTGTTTCATCCACTGTTTCAGGCACAACGCAATCATGGAGCAGCTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp GTTCCTGGGGGAGGAATTTCTAGGTCAGTTGTCTGCTaGACATTGGTACGACCAGGTCTAGGATCAAAAGCA +
Preference number: 6 (lower is better)
Translates to: VPGGGISRSVVC*TLVRPGLGSKA
Trigger: TGCTTTTGATCCTAGACCTGGTCGTACCAATGTCCAGCAGACAACTGACCTAGAAATTCCTCCCCCAGGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp CTGTGTTCCATTACAATTTCTGATCTCCGTTCCGTTTaGGTCGAAGCCAAGCTGATGTCGCTGCTACTGGCC +
Preference number: 6 (lower is better)
Translates to: LCSITISDLRSV*VEAKLMSLLLA
Trigger: GGCCAGTAGCAGCGACATCAGCTTGGCTTCGACCAAAACGGAACGGAGATCAGAAATTGTAATGGAACACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp TTTCTACTTGAGGAGCCTGCAGCAGCAGACGTCTTGTCTGGACAGTaGTTTTTCACCAAGCTGCTCCATGATTGCGTTGTGCCTGAAACA +
Preference number: 6 (lower is better)
Translates to: FLLEEPAAADVLSGQ*FFTKLLHDCVVPET
Trigger: TGTTTCAGGCACAACGCAATCATGGAGCAGCTTGGTGAAAAACAACTGTCCAGACAAGACGTCTGCTGCTGCAGGCTCCTCAAGTAGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp GAAGTTGCGGTGCTCATCACGTTCCTCCCCAAAGTGTTAGTGTTGTaGTCACTGCTGCTTCGGCTTAGGTTCATGTTGTTGGTGGCATTA +
Preference number: 6 (lower is better)
Translates to: EVAVLITFLPKVLVL*SLLLRLRFMLLVAL
Trigger: TAATGCCACCAACAACATGAACCTAAGCCGAAGCAGCAGTGACAACAACACTAACACTTTGGGGAGGAACGTGATGAGCACCGCAACTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp CCTTCCATAGCCACGAGCATGACGAAGTGTGTATGCTaGAGGTATTACCCAGACACCCAGATCTATGGCAAA +
Preference number: 6 (lower is better)
Translates to: PSIATSMTKCVC*RYYPDTQIYGK
Trigger: TTTGCCATAGATCTGGGTGTCTGGGTAATACCTTCAGCATACACACTTCGTCATGCTCGTGGCTATGGAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp GATGTAGTACCAGGTGTGGTCAAATTAGGGAAACTCTaGGCACCCATAAGTGGAGAAGTTGCGGTGCTCATC +
Preference number: 6 (lower is better)
Translates to: DVVPGVVKLGKL*APISGEVAVLI
Trigger: GATGAGCACCGCAACTTCTCCACTTATGGGTGCTCAGAGTTTCCCTAATTTGACCACACCTGGTACTACATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp ACTCCACAGGGGCTCTGCCCGTTGCCTGCTTTAGCCTaGGGCTGCTCTTTTGTCAAATTAAGAATATCACTA +
Preference number: 6 (lower is better)
Translates to: TPQGLCPLPALA*GCSFVKLRISL
Trigger: TAGTGATATTCTTAATTTGACAAAAGAGCAGCCTCAGGCTAAAGCAGGCAACGGGCAGAGCCCCTGTGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp ATTAGCTGCATGTCCCTTTCATCTCCCTGTCCCATCTaGAGCCATTCCAGCAACGTATCAGGATCTACATCT +
Preference number: 6 (lower is better)
Translates to: ISCMSLSSPCPI*SHSSNVSGSTS
Trigger: AGATGTAGATCCTGATACGTTGCTGGAATGGCTGCAGATGGGACAGGGAGATGAAAGGGACATGCAGCTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp CAAAGCGTTGAGAGGAGACTTACAATTGTCGACACCTaGTTACTCAATTTGGAATCTGCAGCAGCAGAGGGG +
Preference number: 6 (lower is better)
Translates to: QSVERRLTIVDT*LLNLESAAAEG
Trigger: CCCCTCTGCTGCTGCAGATTCCAAATTGAGTAACCAGGTGTCGACAATTGTAAGTCTCCTCTCAACGCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp GTATCTTTACTTCGAATACAGTCTATAAGCTGCCGATaGGAGCGCTCCCCAGAACTATCCAATCTCCGCAGT +
Preference number: 6 (lower is better)
Translates to: VSLLRIQSISCR*ERSPELSNLRS
Trigger: ACTGCGGAGATTGGATAGTTCTGGGGAGCGCTCCCATCGGCAGCTTATAGACTGTATTCGAAGTAAAGATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp GATCGTGTGTTACTAGTGGAGAGCCTCTGCAAAGCGTaGAGAGGAGACTTACAATTGTCGACACCTGGTTAC +
Preference number: 6 (lower is better)
Translates to: DRVLLVESLCKA*RGDLQLSTPGY
Trigger: GTAACCAGGTGTCGACAATTGTAAGTCTCCTCTCAACGCTTTGCAGAGGCTCTCCACTAGTAACACACGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp TTGTTGTCACTGCTGCTTCGGCTTAGGTTCATGTTGTaGGTGGCATTAGTCCGTGCTATGTTTGCCACTCTC +
Preference number: 6 (lower is better)
Translates to: LLSLLLRLRFML*VALVRAMFATL
Trigger: GAGAGTGGCAAACATAGCACGGACTAATGCCACCAACAACATGAACCTAAGCCGAAGCAGCAGTGACAACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp GTGTTGTTGTCACTGCTGCTTCGGCTTAGGTTCATGTaGTTGGTGGCATTAGTCCGTGCTATGTTTGCCACT +
Preference number: 6 (lower is better)
Translates to: VLLSLLLRLRFM*LVALVRAMFAT
Trigger: AGTGGCAAACATAGCACGGACTAATGCCACCAACAACATGAACCTAAGCCGAAGCAGCAGTGACAACAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp GTGCTCATCACGTTCCTCCCCAAAGTGTTAGTGTTGTaGTCACTGCTGCTTCGGCTTAGGTTCATGTTGTTG +
Preference number: 6 (lower is better)
Translates to: VLITFLPKVLVL*SLLLRLRFMLL
Trigger: CAACAACATGAACCTAAGCCGAAGCAGCAGTGACAACAACACTAACACTTTGGGGAGGAACGTGATGAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp GGCAGGAAAGTACGAGGTGGACATGTTTCAAAACAGCGATCCACATaGTCAGACATCAAAAGCAGCATGCATAGCTGCTCCAGGGCTATT +
Preference number: 6 (lower is better)
Translates to: GRKVRGGHVSKQRST*SDIKSSMHSCSRAI
Trigger: AATAGCCCTGGAGCAGCTATGCATGCTGCTTTTGATGTCTGACAATGTGGATCGCTGTTTTGAAACATGTCCACCTCGTACTTTCCTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp TTACTAGTGGAGAGCCTCTGCAAAGCGTTGAGAGGAGACTTACAATaGTCGACACCTGGTTACTCAATTTGGAATCTGCAGCAGCAGAGG +
Preference number: 6 (lower is better)
Translates to: LLVESLCKALRGDLQ*STPGYSIWNLQQQR
Trigger: CCTCTGCTGCTGCAGATTCCAAATTGAGTAACCAGGTGTCGACAATTGTAAGTCTCCTCTCAACGCTTTGCAGAGGCTCTCCACTAGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp GTGTTAGTGTTGTTGTCACTGCTGCTTCGGCTTAGGTTCATGTTGTaGGTGGCATTAGTCCGTGCTATGTTTGCCACTCTCCTGACAAAG +
Preference number: 6 (lower is better)
Translates to: VLVLLSLLLRLRFML*VALVRAMFATLLTK
Trigger: CTTTGTCAGGAGAGTGGCAAACATAGCACGGACTAATGCCACCAACAACATGAACCTAAGCCGAAGCAGCAGTGACAACAACACTAACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp ACCTCAGAAGATCGTGTGTTACTAGTGGAGAGCCTCTGCAAAGCGTaGAGAGGAGACTTACAATTGTCGACACCTGGTTACTCAATTTGG +
Preference number: 6 (lower is better)
Translates to: TSEDRVLLVESLCKA*RGDLQLSTPGYSIW
Trigger: CCAAATTGAGTAACCAGGTGTCGACAATTGTAAGTCTCCTCTCAACGCTTTGCAGAGGCTCTCCACTAGTAACACACGATCTTCTGAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp AAAGTGTTAGTGTTGTTGTCACTGCTGCTTCGGCTTAGGTTCATGTaGTTGGTGGCATTAGTCCGTGCTATGTTTGCCACTCTCCTGACA +
Preference number: 6 (lower is better)
Translates to: KVLVLLSLLLRLRFM*LVALVRAMFATLLT
Trigger: TGTCAGGAGAGTGGCAAACATAGCACGGACTAATGCCACCAACAACATGAACCTAAGCCGAAGCAGCAGTGACAACAACACTAACACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp GATACCACAGCCATCGCAGAGTGTAATGTATCTTTATaGACGAGGTGTCCGCTGTCACGAATGAAGGTGAGA +
Preference number: 6 (lower is better)
Translates to: DTTAIAECNVSL*TRCPLSRMKVR
Trigger: TCTCACCTTCATTCGTGACAGCGGACACCTCGTTCATAAAGATACATTACACTCTGCGATGGCTGTGGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp TCCACATTGTCAGACATCAAAAGCAGCATGCATAGCTaGTCCAGGGCTATTAGCTGCATGTCCCTTTCATCT +
Preference number: 6 (lower is better)
Translates to: STLSDIKSSMHS*SRAISCMSLSS
Trigger: AGATGAAAGGGACATGCAGCTAATAGCCCTGGAGCAGCTATGCATGCTGCTTTTGATGTCTGACAATGTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp ACCTCAGAAGATCGTGTGTTACTAGTGGAGAGCCTCTaGAAAGCGTTGAGAGGAGACTTACAATTGTCGACA +
Preference number: 6 (lower is better)
Translates to: TSEDRVLLVESL*KALRGDLQLST
Trigger: TGTCGACAATTGTAAGTCTCCTCTCAACGCTTTGCAGAGGCTCTCCACTAGTAACACACGATCTTCTGAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp GCATCAGTATCTTTACTTCGAATACAGTCTATAAGCTaGCGATGGGAGCGCTCCCCAGAACTATCCAATCTC +
Preference number: 6 (lower is better)
Translates to: ASVSLLRIQSIS*RWERSPELSNL
Trigger: GAGATTGGATAGTTCTGGGGAGCGCTCCCATCGGCAGCTTATAGACTGTATTCGAAGTAAAGATACTGATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp GTTCATGTTGTTGGTGGCATTAGTCCGTGCTATGTTTaGCACTCTCCTGACAAAGCTCTCCAAGCTAGATGT +
Preference number: 6 (lower is better)
Translates to: VHVVGGISPCYV*HSPDKALQARC
Trigger: ACATCTAGCTTGGAGAGCTTTGTCAGGAGAGTGGCAAACATAGCACGGACTAATGCCACCAACAACATGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp GTCATCCCCTTTATTAACTGGACACATCCAATCACCTaGAGACTGGAGAATTGCTACTACTTCACTGTGGCC +
Preference number: 6 (lower is better)
Translates to: VIPFINWTHPIT*RLENCYYFTVA
Trigger: GGCCACAGTGAAGTAGTAGCAATTCTCCAGTCTCCAGGTGATTGGATGTGTCCAGTTAATAAAGGGGATGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp CTGTCGAGGAAATCATATAAGGAGTATTCTGCTTCCTaGCCTGTGTCACTCTCACTAGAGGTTGATGTGAGG +
Preference number: 6 (lower is better)
Translates to: LSRKSYKEYSAS*PVSLSLEVDVR
Trigger: CCTCACATCAACCTCTAGTGAGAGTGACACAGGCCAGGAAGCAGAATACTCCTTATATGATTTCCTCGACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp GTACGAGGTGGACATGTTTCAAAACAGCGATCCACATaGTCAGACATCAAAAGCAGCATGCATAGCTGCTCC +
Preference number: 6 (lower is better)
Translates to: VRGGHVSKQRST*SDIKSSMHSCS
Trigger: GGAGCAGCTATGCATGCTGCTTTTGATGTCTGACAATGTGGATCGCTGTTTTGAAACATGTCCACCTCGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp GAGAGCCTCTGCAAAGCGTTGAGAGGAGACTTACAATaGTCGACACCTGGTTACTCAATTTGGAATCTGCAG +
Preference number: 6 (lower is better)
Translates to: ESLCKALRGDLQ*STPGYSIWNLQ
Trigger: CTGCAGATTCCAAATTGAGTAACCAGGTGTCGACAATTGTAAGTCTCCTCTCAACGCTTTGCAGAGGCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp GCTGCTCATCGCCATCTTCTTGGGATATCCTTGAATAAGGATCACTaGCAACTATATACAGAATCCGCAGAAGCTGAAGGACGTCCTCTA +
Preference number: 6 (lower is better)
Translates to: AAHRHLLGISLNKDH*QLYTESAEAEGRPL
Trigger: TAGAGGACGTCCTTCAGCTTCTGCGGATTCTGTATATAGTTGCAAGTGATCCTTATTCAAGGATATCCCAAGAAGATGGCGATGAGCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp TGTCTATTCGTATGGAGTTCCCAAGATGACTCCAGCTaGGTTGCTATATTTCTGAGTGTCACTACCACCCCA +
Preference number: 6 (lower is better)
Translates to: CLFVWSSQDDSS*VAIFLSVTTTP
Trigger: TGGGGTGGTAGTGACACTCAGAAATATAGCAACTCAGCTGGAGTCATCTTGGGAACTCCATACGAATAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp CAAATAACAGCACCAAGAGGAGGTCAACCAGACGCATaGTATCAAGCACACATCTTTCATCACCCTGTAATG +
Preference number: 6 (lower is better)
Translates to: QITAPRGGQPDA*YQAHIFHHPVM
Trigger: CATTACAGGGTGATGAAAGATGTGTGCTTGATACCATGCGTCTGGTTGACCTCCTCTTGGTGCTGTTATTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp TCACCTGGAGACTGGAGAATTGCTACTACTTCACTGTaGCCTCTTTCTCGAGCTTTATCCAATGGTGTTTTC +
Preference number: 6 (lower is better)
Translates to: SPGDWRIATTSL*PLSRALSNGVF
Trigger: GAAAACACCATTGGATAAAGCTCGAGAAAGAGGCCACAGTGAAGTAGTAGCAATTCTCCAGTCTCCAGGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp AATCCTCGTCATCATCTAGTTCAGCTAAGAGAGTACTaGCACGGCAGCTGTCGAGGAAATCATATAAGGAGT +
Preference number: 6 (lower is better)
Translates to: NPRHHLVQLREY*HGSCRGNHIRS
Trigger: ACTCCTTATATGATTTCCTCGACAGCTGCCGTGCCAGTACTCTCTTAGCTGAACTAGATGATGACGAGGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp TACATAGTAAAAGATGGTGGATCTGAAATTGGTAAGTaGCAGTTCAACTTCCCGCGTTGTTCCAAGCCCCGT +
Preference number: 6 (lower is better)
Translates to: YIVKDGGSEIGK*QFNFPRCSKPR
Trigger: ACGGGGCTTGGAACAACGCGGGAAGTTGAACTGCCACTTACCAATTTCAGATCCACCATCTTTTACTATGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp GCACACATCTTTCATCACCCTGTAATGCACTTTCGATaGAATCTGGAAGCTCTGACCTCAGAAGATCGTGTG +
Preference number: 6 (lower is better)
Translates to: AHIFHHPVMHFR*NLEALTSEDRV
Trigger: CACACGATCTTCTGAGGTCAGAGCTTCCAGATTCAATCGAAAGTGCATTACAGGGTGATGAAAGATGTGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp GTTTTCTCCAACTTGGATTTGAGTTTTCTGCCTCTTTaGCCAGTCCAGCCAGTCACAAACTCTGAACCCAGA +
Preference number: 6 (lower is better)
Translates to: VFSNLDLSFLPL*PVQPVTNSEPR
Trigger: TCTGGGTTCAGAGTTTGTGACTGGCTGGACTGGCAAAAGAGGCAGAAAACTCAAATCCAAGTTGGAGAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp CTGAGGCTGCTCATCGCCATCTTCTTGGGATATCCTTaGATAAGGATCACTTGCAACTATATACAGAATCCG +
Preference number: 6 (lower is better)
Translates to: LRLLIAIFLGYP*IRITCNYIQNP
Trigger: CGGATTCTGTATATAGTTGCAAGTGATCCTTATTCAAGGATATCCCAAGAAGATGGCGATGAGCAGCCTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp GTTGTTAAGTTCAACTACCACCAAGCGATTACAAAGTaGTTTTATAGCTCCATCCACCCCTACTATCCTCCG +
Preference number: 6 (lower is better)
Translates to: VVKFNYHQAITK*FYSSIHPYYPP
Trigger: CGGAGGATAGTAGGGGTGGATGGAGCTATAAAAGCACTTTGTAATCGCTTGGTGGTAGTTGAACTTAACAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS GCA 72 bp TTTGGTAATTCGTCAGTGCCAAGGTACTGTTCCACATaGTCTATAGACCAGCAACCCATTTTCCCATTTTCC +
Preference number: 6 (lower is better)
Translates to: FGNSSVPRYCST*SIDQQPIFPFS
Trigger: GGAAAATGGGAAAATGGGTTGCTGGTCTATAGAGCATGTGGAACAGTACCTTGGCACTGACGAATTACCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp TCTTCAAGTAGAGCGGTGCCATTTCTGGATCCCCTCTaGGTTCATTGCATTCCTCTTCATCTTTGTTTGTAT +
Preference number: 6 (lower is better)
Translates to: SSSRAVPFLDPL*VHCIPLHLCLY
Trigger: ATACAAACAAAGATGAAGAGGAATGCAATGAACCCAGAGGGGATCCAGAAATGGCACCGCTCTACTTGAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp TGGAGGTTATACGTGGATCCTGGTGTGTCATACAAATaGAGAGGTAGGCGTTCAATTGATTCTAGTACAGCT +
Preference number: 6 (lower is better)
Translates to: WRLYVDPGVSYK*RGRRSIDSSTA
Trigger: AGCTGTACTAGAATCAATTGAACGCCTACCTCTCCATTTGTATGACACACCAGGATCCACGTATAACCTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp AAGACATTGTCTGGAGCACTTTCATCAAGGAAAATTTaGCAGAGAGCTGGCAGGAAAGTACGAGGTGGACAT +
Preference number: 6 (lower is better)
Translates to: KTLSGALSSRKI*QRAGRKVRGGH
Trigger: ATGTCCACCTCGTACTTTCCTGCCAGCTCTCTGCAAAATTTTCCTTGATGAAAGTGCTCCAGACAATGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp GTCACCTCTAAGACATTGTCTGGAGCACTTTCATCAAGGAAAATTTaGCAGAGAGCTGGCAGGAAAGTACGAGGTGGACATGTTTCAAAA +
Preference number: 6 (lower is better)
Translates to: VTSKTLSGALSSRKI*QRAGRKVRGGHVSK
Trigger: TTTTGAAACATGTCCACCTCGTACTTTCCTGCCAGCTCTCTGCAAAATTTTCCTTGATGAAAGTGCTCCAGACAATGTCTTAGAGGTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp TGGTATCAAGCACACATCTTTCATCACCCTGTAATGCACTTTCGATaGAATCTGGAAGCTCTGACCTCAGAAGATCGTGTGTTACTAGTG +
Preference number: 6 (lower is better)
Translates to: WYQAHIFHHPVMHFR*NLEALTSEDRVLLV
Trigger: CACTAGTAACACACGATCTTCTGAGGTCAGAGCTTCCAGATTCAATCGAAAGTGCATTACAGGGTGATGAAAGATGTGTGCTTGATACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp CATCATCATCATCCTCTTGATCAAGGACAGTTGCAGTaGTTTCCACTAGTGTTGTGGGCAAATTGTGACCAA +
Preference number: 6 (lower is better)
Translates to: HHHHPLDQGQLQ*FPLVLWANCDQ
Trigger: TTGGTCACAATTTGCCCACAACACTAGTGGAAATCACTGCAACTGTCCTTGATCAAGAGGATGATGATGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp CAGTCCCTTCCTCTAATTATTGACCAGTCTCTCCAATaGTACGGTTTACCTTGCTGCAATTCCTTAGCATCT +
Preference number: 6 (lower is better)
Translates to: QSLPLIIDQSLQ*YGLPCCNSLAS
Trigger: AGATGCTAAGGAATTGCAGCAAGGTAAACCGTATCATTGGAGAGACTGGTCAATAATTAGAGGAAGGGACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp CGCCATCTTCTTGGGATATCCTTGAATAAGGATCACTaGCAACTATATACAGAATCCGCAGAAGCTGAAGGA +
Preference number: 6 (lower is better)
Translates to: RHLLGISLNKDH*QLYTESAEAEG
Trigger: TCCTTCAGCTTCTGCGGATTCTGTATATAGTTGCAAGTGATCCTTATTCAAGGATATCCCAAGAAGATGGCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp GATGTGAGGCTGGTGGTTAAAGTATTACTTAATGATTaGCCCACTGATAAAACTGTGGTTGCCGTAGCTACA +
Preference number: 6 (lower is better)
Translates to: DVRLVVKVLLND*PTDKTVVAVAT
Trigger: TGTAGCTACGGCAACCACAGTTTTATCAGTGGGTCAATCATTAAGTAATACTTTAACCACCAGCCTCACATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp AAACAAATGAGGATCTGTCAAAGTCGTACCACTGCTTaGCCACCATTTTCAGCAGATACTGTTCCAGAGATT +
Preference number: 6 (lower is better)
Translates to: KQMRICQSRTTA*PPFSADTVPEI
Trigger: AATCTCTGGAACAGTATCTGCTGAAAATGGTGGCAAAGCAGTGGTACGACTTTGACAGATCCTCATTTGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp TCCAGCACCTTTACACACTGTTCAGCTAAATCTCTGCTGGTCCTGTaGTTAAGTTCAACTACCACCAAGCGATTACAAAGTGCTTTTATA +
Preference number: 6 (lower is better)
Translates to: SSTFTHCSAKSLLVL*LSSTTTKRLQSAFI
Trigger: TATAAAAGCACTTTGTAATCGCTTGGTGGTAGTTGAACTTAACAACAGGACCAGCAGAGATTTAGCTGAACAGTGTGTAAAGGTGCTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp ACGTGGATCCTGGTGTGTCATACAAATGGAGAGGTAGGCGTTCAATaGATTCTAGTACAGCTATTAATTTTCGAATTAATGCAACTGCTG +
Preference number: 6 (lower is better)
Translates to: TWILVCHTNGEVGVQ*ILVQLLIFELMQLL
Trigger: CAGCAGTTGCATTAATTCGAAAATTAATAGCTGTACTAGAATCAATTGAACGCCTACCTCTCCATTTGTATGACACACCAGGATCCACGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp CTACTTCTGTTTGAGGGACGTTTTCAGCAGATGAAAGAACAACAATaGGTTCATGGACATCAGCTCCTGAAACTATACTGTGTTCCATTA +
Preference number: 6 (lower is better)
Translates to: LLLFEGRFQQMKEQQ*VHGHQLLKLYCVPL
Trigger: TAATGGAACACAGTATAGTTTCAGGAGCTGATGTCCATGAACCAATTGTTGTTCTTTCATCTGCTGAAAACGTCCCTCAAACAGAAGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp GTTGCAGTGATTTCCACTAGTGTTGTGGGCAAATTGTaGCCAACGTCAGAATCACAAACTTCTTTTAACAGT +
Preference number: 6 (lower is better)
Translates to: VAVISTSVVGKL*PTSESQTSFNS
Trigger: ACTGTTAAAAGAAGTTTGTGATTCTGACGTTGGTCACAATTTGCCCACAACACTAGTGGAAATCACTGCAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp CATACGCAGTTTTTGCATTTGTTCCAATCCAGTAAATaGTTCCATTCTCATCAAAGTCATGTTGGTGCCGGA +
Preference number: 6 (lower is better)
Translates to: HTQFLHLFQSSK*FHSHQSHVGAG
Trigger: TCCGGCACCAACATGACTTTGATGAGAATGGAATCATTTACTGGATTGGAACAAATGCAAAAACTGCGTATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp TGCATTATCCATTGTTATCATCTCATCTTCCCCACTTaGCTTGAGATCCACAGCTGTAAAGCCATATATTCT +
Preference number: 6 (lower is better)
Translates to: CIIHCYHLIFPT*LEIHSCKAIYS
Trigger: AGAATATATGGCTTTACAGCTGTGGATCTCAAGCCAAGTGGGGAAGATGAGATGATAACAATGGATAATGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp TTTACACACTGTTCAGCTAAATCTCTGCTGGTCCTGTaGTTAAGTTCAACTACCACCAAGCGATTACAAAGT +
Preference number: 6 (lower is better)
Translates to: FTHCSAKSLLVL*LSSTTTKRLQS
Trigger: ACTTTGTAATCGCTTGGTGGTAGTTGAACTTAACAACAGGACCAGCAGAGATTTAGCTGAACAGTGTGTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 72 bp TTTGAGGGACGTTTTCAGCAGATGAAAGAACAACAATaGGTTCATGGACATCAGCTCCTGAAACTATACTGT +
Preference number: 6 (lower is better)
Translates to: FEGRFQQMKEQQ*VHGHQLLKLYC
Trigger: ACAGTATAGTTTCAGGAGCTGATGTCCATGAACCAATTGTTGTTCTTTCATCTGCTGAAAACGTCCCTCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp GGCTGCTCTTTTGTCAAATTAAGAATATCACTACTTTaGAGACTAGAAATAGCCCCCTGGTTTAATCCAGAC +
Preference number: 6 (lower is better)
Translates to: GCSFVKLRISLL*RLEIAPWFNPD
Trigger: GTCTGGATTAAACCAGGGGGCTATTTCTAGTCTTCAAAGTAGTGATATTCTTAATTTGACAAAAGAGCAGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp ACGTTTTCAGCAGATGAAAGAACAACAATTGGTTCATaGACATCAGCTCCTGAAACTATACTGTGTTCCATT +
Preference number: 6 (lower is better)
Translates to: TFSADERTTIGS*TSAPETILCSI
Trigger: AATGGAACACAGTATAGTTTCAGGAGCTGATGTCCATGAACCAATTGTTGTTCTTTCATCTGCTGAAAACGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CAA 90 bp AGTTCCTGTAACTTTGTGTTCTTCTCATCTTCAGAAAGACTTTTATaGCCTAGAATCTGGCGCCTCTTAATAGCAAGGTCTTTAATTTCT +
Preference number: 6 (lower is better)
Translates to: SSCNFVFFSSSERLL*PRIWRLLIARSLIS
Trigger: AGAAATTAAAGACCTTGCTATTAAGAGGCGCCAGATTCTAGGCAATAAAAGTCTTTCTGAAGATGAGAAGAACACAAAGTTACAGGAACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS TCA 72 bp GATTTCCACAAAGAATCATCTGGACTTCCTCATGGCTaGAGGAACTTAATTTCTCCATTGGAAAAACTTTAT +
Preference number: 6 (lower is better)
Translates to: DFHKESSGLPHG*RNLISPLEKLY
Trigger: ATAAAGTTTTTCCAATGGAGAAATTAAGTTCCTTCAGCCATGAGGAAGTCCAGATGATTCTTTGTGGAAATC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8
CDS CCA 72 bp AAATCTATACTATTGTTTAGAACAGTAAGAAGTGCCTaGACTAAACCACTACTACACATTTCATACGGTGAG +
Preference number: 6 (lower is better)
Translates to: KSILLFRTVRSA*TKPLLHISYGE
Trigger: CTCACCGTATGAAATGTGTAGTAGTGGTTTAGTCCAGGCACTTCTTACTGTTCTAAACAATAGTATAGATTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042052.9
CDS CCA 72 bp AATATACTTACATTGTTTAGAACAGTAAGAAGTGCCTaGACTAAACCACTACTACACATTTCATACGGTGAG +
Preference number: 6 (lower is better)
Translates to: NILTLFRTVRSA*TKPLLHISYGE
Trigger: CTCACCGTATGAAATGTGTAGTAGTGGTTTAGTCCAGGCACTTCTTACTGTTCTAAACAATGTAAGTATATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179265.8
CDS CAA 72 bp CTGGTGTGTCATACAAATGGAGAGGTAGGCGTTCAATaGATTCTAGTACAGCTATTAATTTTCGAATTAATG +
Preference number: 6 (lower is better)
Translates to: LVCHTNGEVGVQ*ILVQLLIFELM
Trigger: CATTAATTCGAAAATTAATAGCTGTACTAGAATCAATTGAACGCCTACCTCTCCATTTGTATGACACACCAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042052.9
ENSMUST00000179265.8