Pregenerated sensors for HEBP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019853Ensembl transcript IDs: ENSMUST00000020000.7, ENSMUST00000213153.2, ENSMUST00000214548.2
Found 110 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTAGTAGACGGTTCTTATGGAAGGGTGAGATGCTTGTGGACTGGTaGATGCACACAGGTAAAACCAGCAGCCAGCAGGCCGGCAGGCAG | + |
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Preference number: 1 (lower is better) Translates to: SSRRFLWKGEMLVDW*MHTGKTSSQQAGRQ Trigger: CTGCCTGCCGGCCTGCTGGCTGCTGGTTTTACCTGTGTGCATTCACCAGTCCACAAGCATCTCACCCTTCCATAAGAACCGTCTACTAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR TCA 90 bp | AAGGCCGTGGCGTTGTCCTGGATCCTCTCAGAAATGGAGGCCACCTaGGTTAGGACCCATTTACAGATTTGTCTGAATGCTCTGGATCTA | + |
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Preference number: 1 (lower is better) Translates to: KAVALSWILSEMEAT*VRTHLQICLNALDL Trigger: TAGATCCAGAGCATTCAGACAAATCTGTAAATGGGTCCTAACTCAGGTGGCCTCCATTTCTGAGAGGATCCAGGACAACGCCACGGCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
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| 3UTR GCA 90 bp | TCTGCCCTTACAGTTTTGTCTGGGGAAAGTTACCCAAGAACTCCATaGCCCAGTTTCCTCTTCTCTAACAGAGGGTGCTCAGCTGTGGAT | + |
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Preference number: 1 (lower is better) Translates to: SALTVLSGESYPRTP*PSFLFSNRGCSAVD Trigger: ATCCACAGCTGAGCACCCTCTGTTAGAGAAGAGGAAACTGGGGCATGGAGTTCTTGGGTAACTTTCCCCAGACAAAACTGTAAGGGCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR TCA 90 bp | CGTGTTAAGGTAAGAACTGTCTTTGTTCAGGGAGCAACAGTTGGATaGGGACACGGATCCAATGGAAAAACGCAACAGCGGAGGCAAGGA | + |
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Preference number: 1 (lower is better) Translates to: RVKVRTVFVQGATVG*GHGSNGKTQQRRQG Trigger: TCCTTGCCTCCGCTGTTGCGTTTTTCCATTGGATCCGTGTCCTCATCCAACTGTTGCTCCCTGAACAAAGACAGTTCTTACCTTAACACG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR CCA 90 bp | GAGGCAAGGCTTTCTAACCTCCATGTCTATGCAGCAGCCCACCGTTaGACAGAGAATGTCCATACAACCTCTAGAATGACTACACACTGT | + |
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Preference number: 1 (lower is better) Translates to: EARLSNLHVYAAAHR*TENVHTTSRMTTHC Trigger: ACAGTGTGTAGTCATTCTAGAGGTTGTATGGACATTCTCTGTCCAACGGTGGGCTGCTGCATAGACATGGAGGTTAGAAAGCCTTGCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR CCA 90 bp | TGTCTTTGTTCAGGGAGCAACAGTTGGATGAGGACACGGATCCAATaGAAAAACGCAACAGCGGAGGCAAGGAAAGTTATCTTTGTAGCC | + |
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Preference number: 1 (lower is better) Translates to: CLCSGSNSWMRTRIQ*KNATAEARKVIFVA Trigger: GGCTACAAAGATAACTTTCCTTGCCTCCGCTGTTGCGTTTTTCCATTGGATCCGTGTCCTCATCCAACTGTTGCTCCCTGAACAAAGACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR CCA 90 bp | CTCCATGCCCCAGTTTCCTCTTCTCTAACAGAGGGTGCTCAGCTGTaGATTAGTGTGAAGTTTGACTGGGAAGATTCAGGTGAAATACTC | + |
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Preference number: 1 (lower is better) Translates to: LHAPVSSSLTEGAQL*ISVKFDWEDSGEIL Trigger: GAGTATTTCACCTGAATCTTCCCAGTCAAACTTCACACTAATCCACAGCTGAGCACCCTCTGTTAGAGAAGAGGAAACTGGGGCATGGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR TCA 90 bp | ACCCTGGCAGGCAGAGCCTTGAGACAAGAAAGAGATCTAAAGCCTTaGCTGAGGCCCGTTAGTTTTCCTTCTCTATGGTTTCCATTTGAA | + |
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Preference number: 1 (lower is better) Translates to: TLAGRALRQERDLKP*LRPVSFPSLWFPFE Trigger: TTCAAATGGAAACCATAGAGAAGGAAAACTAACGGGCCTCAGTCAAGGCTTTAGATCTCTTTCTTGTCTCAAGGCTCTGCCTGCCAGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR GCA 90 bp | TCGATGTCTGCATTCAGCAGCAGGTCTGCCCCTGCTTCATTTCTTTaGTTCCTTATTTGTTCTCGACGGAGGGCTCATTTTTCTGAATCA | + |
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Preference number: 1 (lower is better) Translates to: SMSAFSSRSAPASFL*FLICSRRRAHFSES Trigger: TGATTCAGAAAAATGAGCCCTCCGTCGAGAACAAATAAGGAAGCAAAGAAATGAAGCAGGGGCAGACCTGCTGCTGAATGCAGACATCGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213153.2 |
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| 3UTR CCA 90 bp | TCTCTAACAGAGGGTGCTCAGCTGTGGATTAGTGTGAAGTTTGACTaGGAAGATTCAGGTGAAATACTCAGGATGGTCTACAAAGATACC | + |
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Preference number: 1 (lower is better) Translates to: SLTEGAQLWISVKFD*EDSGEILRMVYKDT Trigger: GGTATCTTTGTAGACCATCCTGAGTATTTCACCTGAATCTTCCCAGTCAAACTTCACACTAATCCACAGCTGAGCACCCTCTGTTAGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR CCA 90 bp | GAATGCCTGTCTCTCTCAAATTCATATCAAACTCCTAATCACAAATaGGATAGTTTAAAGAGCCTCTGGAGGGTGGTTAGATCCTGGGGG | + |
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Preference number: 1 (lower is better) Translates to: ECLSLSNSYQTPNHK*DSLKSLWRVVRSWG Trigger: CCCCCAGGATCTAACCACCCTCCAGAGGCTCTTTAAACTATCCCATTTGTGATTAGGAGTTTGATATGAATTTGAGAGAGACAGGCATTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR CCA 90 bp | TCTCATTTAGCTTTATCCAATTTACTGGACCTTCAGTCGACTCTATaGTCATTTCTCAAGAAGCAACTGTGTGGCCTCTGCTTACACAGA | + |
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Preference number: 1 (lower is better) Translates to: SHLALSNLLDLQSTL*SFLKKQLCGLCLHR Trigger: TCTGTGTAAGCAGAGGCCACACAGTTGCTTCTTGAGAAATGACCATAGAGTCGACTGAAGGTCCAGTAAATTGGATAAAGCTAAATGAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR GCA 90 bp | AGACACAAAGTTTCTTCAGTTAGGAACAGAATGCTGTGGACTGAATaGCTGTCTCTCTCAAATTCATATCAAACTCCTAATCACAAATGG | + |
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Preference number: 1 (lower is better) Translates to: RHKVSSVRNRMLWTE*LSLSNSYQTPNHKW Trigger: CCATTTGTGATTAGGAGTTTGATATGAATTTGAGAGAGACAGGCATTCAGTCCACAGCATTCTGTTCCTAACTGAAGAAACTTTGTGTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR-3UTR GCA 90 bp | TGCCCTAAGGCCAAGGAGAGAGGCAAGATAACGGTGATAGCGCCAGTCGGAGGGGGGAGAGCATCTGAATaGCCTAAGGCCAAGGAGAGA | + |
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Preference number: 2 (lower is better) Translates to: CPKAKERGKITVIAPVGGGRASE*PKAKER Trigger: TCTCTCCTTGGCCTTAGGGCATTCAGATGCTCTCCC...CCCTCCGACTGGCGCTATCACCGTTATCTTGCCTCTCTCCTTGGCCTTAGGGCA 57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
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| 3UTR-3UTR GCA 90 bp | CGGAGGGAAAGGCCGTGGCGTTGTCCTGGATCCTCTCAGAAATGGAGGCCACCTCAGCAGGTCTGCCCCTaGTTCATTTCTTTGCTTCCT | + |
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Preference number: 2 (lower is better) Translates to: RRERPWRCPGSSQKWRPPQQVCP*FISLLP Trigger: AGGAAGCAAAGAAATGAAGCAGGGGCAGACCTGCTG...AGGTGGCCTCCATTTCTGAGAGGATCCAGGACAACGCCACGGCCTTTCCCTCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213153.2 |
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| 3UTR-3UTR GCA 90 bp | TTGTCTGGGGAAAGTTACCCAAGAACTCCATGCCCCAGTTTCCTCTTCTCTAACATCTTCCCAGGAGCCTaGATCAGAGTGAGCGCCATC | + |
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Preference number: 2 (lower is better) Translates to: LSGESYPRTPCPSFLFSNIFPGA*IRVSAI Trigger: GATGGCGCTCACTCTGATGCAGGCTCCTGGGAAGAT...GTTAGAGAAGAGGAAACTGGGGCATGGAGTTCTTGGGTAACTTTCCCCAGACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR-3UTR GCA 90 bp | CAGCCTTCCCTAATGGACCTGTGGGAGAGGAGACACCAGATCAGAAGAGTGATTTTGTGGACTGGTGAATaGACACAGGTAAAACCAGCA | + |
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Preference number: 2 (lower is better) Translates to: QPSLMDLWERRHQIRRVILWTGE*TQVKPA Trigger: TGCTGGTTTTACCTGTGTGCATTCACCAGTCCACAA...AATCACTCTTCTGATCTGGTGTCTCCTCTCCCACAGGTCCATTAGGGAAGGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR-3UTR GCA 90 bp | TGGATTAGTGTGAAGTTTGACTGGGAAGATTCAGGTGAAATACTCAGGATGGTCGGGAGAGCATCTGAATaGCCTAAGGCCAAGGAGAGA | + |
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Preference number: 2 (lower is better) Translates to: WISVKFDWEDSGEILRMVGRASE*PKAKER Trigger: TCTCTCCTTGGCCTTAGGGCATTCAGATGCTCTCCC...GACCATCCTGAGTATTTCACCTGAATCTTCCCAGTCAAACTTCACACTAATCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR-3UTR GCA 90 bp | TCTGAATGCCCTAAGGCCAAGGAGAGAGGCAAGATAACGGTGATAGCGCCAGTCCCTGCTTCATTTCTTTaGTTCCTTATTTGTTCTCGA | + |
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Preference number: 2 (lower is better) Translates to: SECPKAKERGKITVIAPVPASFL*FLICSR Trigger: TCGAGAACAAATAAGGAAGCAAAGAAATGAAGCAGG...GACTGGCGCTATCACCGTTATCTTGCCTCTCTCCTTGGCCTTAGGGCATTCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213153.2 |
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| 3UTR-3UTR CCA 90 bp | CGTATTCAACAATGTCTCCTTATGCCCAAATGCACTTTGGCAGAGGGCAATAGCAGTTTAAAGAGCCTCTaGAGGGTGGTTAGATCCTGG | + |
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Preference number: 2 (lower is better) Translates to: RIQQCLLMPKCTLAEGNSSLKSL*RVVRSW Trigger: CCAGGATCTAACCACCCTCCAGAGGCTCTTTAAACT...GCTATTGCCCTCTGCCAAAGTGCATTTGGGCATAAGGAGACATTGTTGAATACG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR-3UTR TCA 90 bp | GCATTCAGCAGCAGGTCTGCCCCTGCTTCATTTCTTTGCTTCCTTATTTGTTCTGAGGGCTCATTTTTCTaGATCAGCCACACTTCGTTA | + |
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Preference number: 2 (lower is better) Translates to: AFSSRSAPASFLCFLICSEGSFF*ISHTSL Trigger: TAACGAAGTGTGGCTGATTCAGAAAAATGAGCCCTC...AGAACAAATAAGGAAGCAAAGAAATGAAGCAGGGGCAGACCTGCTGCTGAATGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213153.2 |
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| 3UTR-3UTR GCA 90 bp | GGCCCGTTAGTTTTCCTTCTCTATGGTTTCCATTTGAAAGGGGATGTTCCTCCTCAGTTAGGAACAGAATaGTGTGGACTGAATGCCTGT | + |
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Preference number: 2 (lower is better) Translates to: GPLVFLLYGFHLKGDVPPQLGTE*CGLNAC Trigger: ACAGGCATTCAGTCCACAGCATTCTGTTCCTAACTG...AGGAGGAACATCCCCTTTCAAATGGAAACCATAGAGAAGGAAAACTAACGGGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR-3UTR TCA 90 bp | AGAATCATGAGACTCAGATATGTCAGGTATCAAGGGCCCAATTCCTGTCCAGGATCTATGGTTTCCATTTaGAAGGGGATGTTCCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: RIMRLRYVRYQGPNSCPGSMVSI*KGMFLL Trigger: AAGGAGGAACATCCCCTTTCAAATGGAAACCATAGA...TCCTGGACAGGAATTGGGCCCTTGATACCTGACATATCTGAGTCTCATGATTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR-3UTR CCA 90 bp | TCCAACATCCATCTCATTCCAATAGACCCTGGCAGGCAGAGCCTTGAGACAAGAACTCCTAATCACAAATaGGATAGTTTAAAGAGCCTC | + |
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Preference number: 2 (lower is better) Translates to: SNIHLIPIDPGRQSLETRTPNHK*DSLKSL Trigger: GAGGCTCTTTAAACTATCCCATTTGTGATTAGGAGT...TCTTGTCTCAAGGCTCTGCCTGCCAGGGTCTATTGGAATGAGATGGATGTTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR-3UTR CCA 90 bp | TCCAACATCCATCTCATTCCAATAGACCCTGGCAGGCAGAGCCTTGAGACAAGAAGTTTTCCTTCTCTATaGTTTCCATTTGAAAGGGGA | + |
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Preference number: 2 (lower is better) Translates to: SNIHLIPIDPGRQSLETRSFPSL*FPFERG Trigger: TCCCCTTTCAAATGGAAACCATAGAGAAGGAAAACT...TCTTGTCTCAAGGCTCTGCCTGCCAGGGTCTATTGGAATGAGATGGATGTTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR CAA 90 bp | GGTTTCCATTTGAAAGGGGATGTTCCTCCTTTGCATGTCACAATGTaGTACAAACAAGCCCATAGCTTGTTTGACTTTTACAGGCCCACA | + |
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Preference number: 2 (lower is better) Translates to: GFHLKGDVPPLHVTM*YKQAHSLFDFYRPT Trigger: TGTGGGCCTGTAAAAGTCAAACAAGCTATGGGCTTGTTTGTACAACATTGTGACATGCAAAGGAGGAACATCCCCTTTCAAATGGAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR-3UTR TCA 90 bp | ATCCAGAATCATGAGACTCAGATATGTCAGGTATCAAGGGCCCAATTCCTGTCCTCAAATGTGCTTATATaGATCAGGAAATGGCCCCTA | + |
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Preference number: 2 (lower is better) Translates to: IQNHETQICQVSRAQFLSSNVLI*IRKWPL Trigger: TAGGGGCCATTTCCTGATTCATATAAGCACATTTGA...GGACAGGAATTGGGCCCTTGATACCTGACATATCTGAGTCTCATGATTCTGGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR-3UTR TCA 90 bp | ATCCAGAATCATGAGACTCAGATATGTCAGGTATCAAGGGCCCAATTCCTGTCCAGAGAGAATTTGCTTTaGGATAAGTCATGCTTTGAG | + |
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Preference number: 2 (lower is better) Translates to: IQNHETQICQVSRAQFLSRENLL*DKSCFE Trigger: CTCAAAGCATGACTTATCTCAAAGCAAATTCTCTCT...GGACAGGAATTGGGCCCTTGATACCTGACATATCTGAGTCTCATGATTCTGGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR CAA 90 bp | GTTTTCCTTCTCTATGGTTTCCATTTGAAAGGGGATGTTCCTCCTTaGCATGTCACAATGTTGTACAAACAAGCCCATAGCTTGTTTGAC | + |
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Preference number: 2 (lower is better) Translates to: VFLLYGFHLKGDVPP*HVTMLYKQAHSLFD Trigger: GTCAAACAAGCTATGGGCTTGTTTGTACAACATTGTGACATGCAAAGGAGGAACATCCCCTTTCAAATGGAAACCATAGAGAAGGAAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR-3UTR GCA 90 bp | CTAGAGAGAATTTGCTTTGAGATAAGTCATGCTTTGAGTCTCAAGCCAGATTTTATGCTGTGGACTGAATaGCTGTCTCTCTCAAATTCA | + |
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Preference number: 2 (lower is better) Translates to: LERICFEISHALSLKPDFMLWTE*LSLSNS Trigger: TGAATTTGAGAGAGACAGGCATTCAGTCCACAGCAT...AAAATCTGGCTTGAGACTCAAAGCATGACTTATCTCAAAGCAAATTCTCTCTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR-3UTR TCA 90 bp | ATCTGCTATAATTTCAGAACCAGAAATGTAGCTTGCTCTGTATTAAAAACGACCTATCAGTGTATTTCTTaGAAAGGCACACCTGTCATG | + |
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Preference number: 2 (lower is better) Translates to: ICYNFRTRNVACSVLKTTYQCIS*KGTPVM Trigger: CATGACAGGTGTGCCTTTTCAAGAAATACACTGATA...GGTCGTTTTTAATACAGAGCAAGCTACATTTCTGGTTCTGAAATTATAGCAGAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR-3UTR CCA 90 bp | ATCTGCTATAATTTCAGAACCAGAAATGTAGCTTGCTCTGTATTAAAAACGACCGCTTATTACCACAGTTaGAATGGAATGAATGGAAAA | + |
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Preference number: 2 (lower is better) Translates to: ICYNFRTRNVACSVLKTTAYYHS*NGMNGK Trigger: TTTTCCATTCATTCCATTCCAACTGTGGTAATAAGC...GGTCGTTTTTAATACAGAGCAAGCTACATTTCTGGTTCTGAAATTATAGCAGAT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR CCA 72 bp | CCCAAATGCACTTTGGCAGAGGGCAATAGCAAGGGCTaGGCCACCCCAGACGCTCCCCACTACAGCCTTCCC | + |
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Preference number: 3 (lower is better) Translates to: PKCTLAEGNSKG*ATPDAPHYSLP Trigger: GGGAAGGCTGTAGTGGGGAGCGTCTGGGGTGGCCCAGCCCTTGCTATTGCCCTCTGCCAAAGTGCATTTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR CCA 72 bp | GTATTCAACAATGTCTCCTTATGCCCAAATGCACTTTaGCAGAGGGCAATAGCAAGGGCTGGGCCACCCCAG | + |
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Preference number: 3 (lower is better) Translates to: VFNNVSLCPNAL*QRAIARAGPPQ Trigger: CTGGGGTGGCCCAGCCCTTGCTATTGCCCTCTGCCAAAGTGCATTTGGGCATAAGGAGACATTGTTGAATAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR-3UTR CAA 90 bp | TCCTCTTCTCTAACAGAGGGTGCTCAGCTGTGGATTAGTGTGAAGTTTGACTGGTTCAGGGAGCAACAGTaGGATGAGGACACGGATCCA | + |
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Preference number: 3 (lower is better) Translates to: SSSLTEGAQLWISVKFDWFREQQ*DEDTDP Trigger: TGGATCCGTGTCCTCATCCAACTGTTGCTCCCTGAA...CCAGTCAAACTTCACACTAATCCACAGCTGAGCACCCTCTGTTAGAGAAGAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR-3UTR CAA 90 bp | CAGCCTTCCCTAATGGACCTGTGGGAGAGGAGACACCAGATCAGAAGAGTGATTCTGTCCAGGAAAACTTaGGGGATCCAACATCCATCT | + |
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Preference number: 3 (lower is better) Translates to: QPSLMDLWERRHQIRRVILSRKT*GIQHPS Trigger: AGATGGATGTTGGATCCCCAAAGTTTTCCTGGACAG...AATCACTCTTCTGATCTGGTGTCTCCTCTCCCACAGGTCCATTAGGGAAGGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR TCA 72 bp | TGGACCTGTGGGAGAGGAGACACCAGATCAGAAGAGTaGTTGGTATGCACTTGTAGCCTGGTAGCATCTCAA | + |
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Preference number: 3 (lower is better) Translates to: WTCGRGDTRSEE*LVCTCSLVASQ Trigger: TTGAGATGCTACCAGGCTACAAGTGCATACCAATCACTCTTCTGATCTGGTGTCTCCTCTCCCACAGGTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR GCA 72 bp | ACACTACATATGTCGCCTATGAGTGCTCTCGATGTCTaGATTCAGCAGCAGGTCTGCCCCTGCTTCATTTCT | + |
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Preference number: 3 (lower is better) Translates to: TLHMSPMSALDV*IQQQVCPCFIS Trigger: AGAAATGAAGCAGGGGCAGACCTGCTGCTGAATGCAGACATCGAGAGCACTCATAGGCGACATATGTAGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
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| 3UTR CCA 72 bp | TCAGGGAGCAACAGTTGGATGAGGACACGGATCCAATaGAAAAACGCAACAGCGGAGGCAAGGAAAGTTATC | + |
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Preference number: 3 (lower is better) Translates to: SGSNSWMRTRIQ*KNATAEARKVI Trigger: GATAACTTTCCTTGCCTCCGCTGTTGCGTTTTTCCATTGGATCCGTGTCCTCATCCAACTGTTGCTCCCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR CCA 72 bp | CTAGTAGACGGTTCTTATGGAAGGGTGAGATGCTTGTaGACTGGTGAATGCACACAGGTAAAACCAGCAGCC | + |
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Preference number: 3 (lower is better) Translates to: LVDGSYGRVRCL*TGECTQVKPAA Trigger: GGCTGCTGGTTTTACCTGTGTGCATTCACCAGTCCACAAGCATCTCACCCTTCCATAAGAACCGTCTACTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR TCA 72 bp | GTAAGAACTGTCTTTGTTCAGGGAGCAACAGTTGGATaGGGACACGGATCCAATGGAAAAACGCAACAGCGG | + |
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Preference number: 3 (lower is better) Translates to: VRTVFVQGATVG*GHGSNGKTQQR Trigger: CCGCTGTTGCGTTTTTCCATTGGATCCGTGTCCTCATCCAACTGTTGCTCCCTGAACAAAGACAGTTCTTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR TCA 72 bp | GTGTGCCAGGAGCTTATTACCACAGTTGGAATGGAATaGATGGAAAAACCAGGTCAGCCTCTGCCCTTACAG | + |
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Preference number: 3 (lower is better) Translates to: VCQELITTVGME*MEKPGQPLPLQ Trigger: CTGTAAGGGCAGAGGCTGACCTGGTTTTTCCATTCATTCCATTCCAACTGTGGTAATAAGCTCCTGGCACAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR GCA 72 bp | ACAGTTTTGTCTGGGGAAAGTTACCCAAGAACTCCATaGCCCAGTTTCCTCTTCTCTAACAGAGGGTGCTCA | + |
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Preference number: 3 (lower is better) Translates to: TVLSGESYPRTP*PSFLFSNRGCS Trigger: TGAGCACCCTCTGTTAGAGAAGAGGAAACTGGGGCATGGAGTTCTTGGGTAACTTTCCCCAGACAAAACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR CCA 72 bp | GGTTTGTGTGCCAGGAGCTTATTACCACAGTTGGAATaGAATGAATGGAAAAACCAGGTCAGCCTCTGCCCT | + |
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Preference number: 3 (lower is better) Translates to: GLCARSLLPQLE*NEWKNQVSLCP Trigger: AGGGCAGAGGCTGACCTGGTTTTTCCATTCATTCCATTCCAACTGTGGTAATAAGCTCCTGGCACACAAACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR-3UTR CAA 90 bp | CGTATTCAACAATGTCTCCTTATGCCCAAATGCACTTTGGCAGAGGGCAATAGCCTAAACCTAACAACTTaGCTGGGCTTGGGGGTATCC | + |
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Preference number: 3 (lower is better) Translates to: RIQQCLLMPKCTLAEGNSLNLTT*LGLGVS Trigger: GGATACCCCCAAGCCCAGCAAAGTTGTTAGGTTTAG...GCTATTGCCCTCTGCCAAAGTGCATTTGGGCATAAGGAGACATTGTTGAATACG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR-3UTR CAA 90 bp | GCTGCCCTTTTCAAAGAAGAGCAAAGCCCATGTCTACCGTATTCAACAATGTCTATGCCCAAATGCACTTaGGCAGAGGGCAATAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: AALFKEEQSPCLPYSTMSMPKCT*AEGNSK Trigger: CTTGCTATTGCCCTCTGCCAAAGTGCATTTGGGCAT...AGACATTGTTGAATACGGTAGACATGGGCTTTGCTCTTCTTTGAAAAGGGCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR TCA 72 bp | CCTCTGCTTACACAGACGTGGAAAGCATGCCACTTGTaGGCAGCTTTAATTATCACGAGGTTCCCAAGATCT | + |
|
Preference number: 3 (lower is better) Translates to: PLLTQTWKACHL*AALIITRFPRS Trigger: AGATCTTGGGAACCTCGTGATAATTAAAGCTGCTCACAAGTGGCATGCTTTCCACGTCTGTGTAAGCAGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| 3UTR GCA 72 bp | AAGCCCATGTCTACCGTATTCAACAATGTCTCCTTATaGCCAAATGCACTTTGGCAGAGGGCAATAGCAAGG | + |
|
Preference number: 3 (lower is better) Translates to: KPMSTVFNNVSL*PNALWQRAIAR Trigger: CCTTGCTATTGCCCTCTGCCAAAGTGCATTTGGGCATAAGGAGACATTGTTGAATACGGTAGACATGGGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| 3UTR CCA 72 bp | CTTTCTAACCTCCATGTCTATGCAGCAGCCCACCGTTaGACAGAGAATGTCCATACAACCTCTAGAATGACT | + |
|
Preference number: 3 (lower is better) Translates to: LSNLHVYAAAHR*TENVHTTSRMT Trigger: AGTCATTCTAGAGGTTGTATGGACATTCTCTGTCCAACGGTGGGCTGCTGCATAGACATGGAGGTTAGAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| 3UTR CCA 72 bp | GAGGGTGCTCAGCTGTGGATTAGTGTGAAGTTTGACTaGGAAGATTCAGGTGAAATACTCAGGATGGTCTAC | + |
|
Preference number: 3 (lower is better) Translates to: EGAQLWISVKFD*EDSGEILRMVY Trigger: GTAGACCATCCTGAGTATTTCACCTGAATCTTCCCAGTCAAACTTCACACTAATCCACAGCTGAGCACCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| 3UTR CCA 72 bp | CCAGTTTCCTCTTCTCTAACAGAGGGTGCTCAGCTGTaGATTAGTGTGAAGTTTGACTGGGAAGATTCAGGT | + |
|
Preference number: 3 (lower is better) Translates to: PVSSSLTEGAQL*ISVKFDWEDSG Trigger: ACCTGAATCTTCCCAGTCAAACTTCACACTAATCCACAGCTGAGCACCCTCTGTTAGAGAAGAGGAAACTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| 3UTR-3UTR CAA 90 bp | CATGAGACTCAGATATGTCAGGTATCAAGGGCCCAATTCCTGTCCAGGAAAACTCTCTATGGTTTCCATTaGAAAGGGGATGTTCCTCCT | + |
|
Preference number: 3 (lower is better) Translates to: HETQICQVSRAQFLSRKTLYGFH*KGDVPP Trigger: AGGAGGAACATCCCCTTTCAAATGGAAACCATAGAG...AGTTTTCCTGGACAGGAATTGGGCCCTTGATACCTGACATATCTGAGTCTCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| 3UTR TCA 72 bp | GGCAGAGCCTTGAGACAAGAAAGAGATCTAAAGCCTTaGCTGAGGCCCGTTAGTTTTCCTTCTCTATGGTTT | + |
|
Preference number: 3 (lower is better) Translates to: GRALRQERDLKP*LRPVSFPSLWF Trigger: AAACCATAGAGAAGGAAAACTAACGGGCCTCAGTCAAGGCTTTAGATCTCTTTCTTGTCTCAAGGCTCTGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| 3UTR GCA 72 bp | ATTTTCAGTGTTATTAAGGAAGGGAGAGCATCTGAATaGCCTAAGGCCAAGGAGAGAGGCAAGATAACGGTG | + |
|
Preference number: 3 (lower is better) Translates to: IFSVIKEGRASE*PKAKERGKITV Trigger: CACCGTTATCTTGCCTCTCTCCTTGGCCTTAGGGCATTCAGATGCTCTCCCTTCCTTAATAACACTGAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
||
| 3UTR CCA 72 bp | GCTTTATCCAATTTACTGGACCTTCAGTCGACTCTATaGTCATTTCTCAAGAAGCAACTGTGTGGCCTCTGC | + |
|
Preference number: 3 (lower is better) Translates to: ALSNLLDLQSTL*SFLKKQLCGLC Trigger: GCAGAGGCCACACAGTTGCTTCTTGAGAAATGACCATAGAGTCGACTGAAGGTCCAGTAAATTGGATAAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| 3UTR CCA 72 bp | GCCAGGAGCTTATTACCACAGTTGGAATGGAATGAATaGAAAAACCAGGTCAGCCTCTGCCCTTACAGTTTT | + |
|
Preference number: 3 (lower is better) Translates to: ARSLLPQLEWNE*KNQVSLCPYSF Trigger: AAAACTGTAAGGGCAGAGGCTGACCTGGTTTTTCCATTCATTCCATTCCAACTGTGGTAATAAGCTCCTGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| 3UTR-3UTR CAA 90 bp | ATCCAGAATCATGAGACTCAGATATGTCAGGTATCAAGGGCCCAATTCCTGTCCAAAACTGTAAGTGCCTaGACCTTGAACCTAGCTTCT | + |
|
Preference number: 3 (lower is better) Translates to: IQNHETQICQVSRAQFLSKTVSA*TLNLAS Trigger: AGAAGCTAGGTTCAAGGTCAAGGCACTTACAGTTTT...GGACAGGAATTGGGCCCTTGATACCTGACATATCTGAGTCTCATGATTCTGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| 3UTR CCA 72 bp | GGGACAGTTGTTATTAGAGCAGTGGTTCTTAACTTGTaGGTCACTATTCCTTCGGGGTTGAATGACCTTTTC | + |
|
Preference number: 3 (lower is better) Translates to: GTVVIRAVVLNL*VTIPSGLNDLF Trigger: GAAAAGGTCATTCAACCCCGAAGGAATAGTGACCCACAAGTTAAGAACCACTGCTCTAATAACAACTGTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| 3UTR CCA 72 bp | AGTTTGACTGGGAAGATTCAGGTGAAATACTCAGGATaGTCTACAAAGATACCTGTAACTGAGGGGACAGTT | + |
|
Preference number: 3 (lower is better) Translates to: SLTGKIQVKYSG*STKIPVTEGTV Trigger: AACTGTCCCCTCAGTTACAGGTATCTTTGTAGACCATCCTGAGTATTTCACCTGAATCTTCCCAGTCAAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| 3UTR TCA 72 bp | GACTTTTACAGGCCCACAGCTAGAGAGAATTTGCTTTaGGATAAGTCATGCTTTGAGTCTCAAGCCAGATTT | + |
|
Preference number: 3 (lower is better) Translates to: DFYRPTARENLL*DKSCFESQARF Trigger: AAATCTGGCTTGAGACTCAAAGCATGACTTATCTCAAAGCAAATTCTCTCTAGCTGTGGGCCTGTAAAAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| 3UTR GCA 72 bp | TGTTTGACTTTTACAGGCCCACAGCTAGAGAGAATTTaGTTTGAGATAAGTCATGCTTTGAGTCTCAAGCCA | + |
|
Preference number: 3 (lower is better) Translates to: CLTFTGPQLERI*FEISHALSLKP Trigger: TGGCTTGAGACTCAAAGCATGACTTATCTCAAAGCAAATTCTCTCTAGCTGTGGGCCTGTAAAAGTCAAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| 3UTR-3UTR CAA 90 bp | ATCTGCTATAATTTCAGAACCAGAAATGTAGCTTGCTCTGTATTAAAAACGACCCTTATAACATTCAAGTaGGAGGGATTTCATGTCTCA | + |
|
Preference number: 3 (lower is better) Translates to: ICYNFRTRNVACSVLKTTLITFK*EGFHVS Trigger: TGAGACATGAAATCCCTCCAACTTGAATGTTATAAG...GGTCGTTTTTAATACAGAGCAAGCTACATTTCTGGTTCTGAAATTATAGCAGAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| CDS-3UTR CCA 90 bp | TGCCCTAAGGCCAAGGAGAGAGGCAAGATAACGGTGATAGCGCCAGTCGGAGGGGGCCACCCCGAGGTCTaGCTCCGGCTCCTCTGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: CPKAKERGKITVIAPVGGGHPEV*LRLLCH Trigger: ATGGCAGAGGAGCCGGAGCCAGACCTCGGGGTGGCC...CCCTCCGACTGGCGCTATCACCGTTATCTTGCCTCTCTCCTTGGCCTTAGGGCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
||
| CDS-3UTR TCA 90 bp | TGCCCTAAGGCCAAGGAGAGAGGCAAGATAACGGTGATAGCGCCAGTCGGAGGGGGCATCTCCAAGGCCTaGTCCTCTGAGCCCTCGGCC | + |
|
Preference number: 4 (lower is better) Translates to: CPKAKERGKITVIAPVGGGISKA*SSEPSA Trigger: GGCCGAGGGCTCAGAGGATCAGGCCTTGGAGATGCC...CCCTCCGACTGGCGCTATCACCGTTATCTTGCCTCTCTCCTTGGCCTTAGGGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
||
| CDS-3UTR TCA 90 bp | GGAGGGAAAGGCCGTGGCGTTGTCCTGGATCCTCTCAGAAATGGAGGCCACCTGACCAGTCTGGATGGCTaGATCCCAGTCCAGGGACTC | + |
|
Preference number: 4 (lower is better) Translates to: GGKGRGVVLDPLRNGGHLTSLDG*IPVQGL Trigger: GAGTCCCTGGACTGGGATTCAGCCATCCAGACTGGT...CAGGTGGCCTCCATTTCTGAGAGGATCCAGGACAACGCCACGGCCTTTCCCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
||
| CDS-3UTR TCA 90 bp | AAGGAAGGGAGAGCATCTGAATGCCCTAAGGCCAAGGAGAGAGGCAAGATAACGCAAGGCCTGATCCTCTaGGCCCTCGGCCACCCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: KEGRASECPKAKERGKITQGLIL*ALGHPE Trigger: CTCGGGGTGGCCGAGGGCTCAGAGGATCAGGCCTTG...CGTTATCTTGCCTCTCTCCTTGGCCTTAGGGCATTCAGATGCTCTCCCTTCCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
||
| CDS-3UTR CCA 90 bp | AAGGAAGGGAGAGCATCTGAATGCCCTAAGGCCAAGGAGAGAGGCAAGATAACGGGCCACCCCGAGGTCTaGCTCCGGCTCCTCTGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: KEGRASECPKAKERGKITGHPEV*LRLLCH Trigger: ATGGCAGAGGAGCCGGAGCCAGACCTCGGGGTGGCC...CGTTATCTTGCCTCTCTCCTTGGCCTTAGGGCATTCAGATGCTCTCCCTTCCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
||
| CDS-3UTR TCA 90 bp | GGCCCGTTAGTTTTCCTTCTCTATGGTTTCCATTTGAAAGGGGATGTTCCTCCTCAAGGCCTGATCCTCTaGGCCCTCGGCCACCCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: GPLVFLLYGFHLKGDVPPQGLIL*ALGHPE Trigger: CTCGGGGTGGCCGAGGGCTCAGAGGATCAGGCCTTG...AGGAGGAACATCCCCTTTCAAATGGAAACCATAGAGAAGGAAAACTAACGGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| CDS-3UTR TCA 90 bp | GGAGGGAAAGGCCGTGGCGTTGTCCTGGATCCTCTCAGAAATGGAGGCCACCTGAGCCATTCAATTTTGTaGAACCAGTCTGGATGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GGKGRGVVLDPLRNGGHLSHSIL*NQSGWL Trigger: CAGCCATCCAGACTGGTTTCACAAAATTGAATGGCT...CAGGTGGCCTCCATTTCTGAGAGGATCCAGGACAACGCCACGGCCTTTCCCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
||
| CDS-3UTR TCA 90 bp | TGCCCTAAGGCCAAGGAGAGAGGCAAGATAACGGTGATAGCGCCAGTCGGAGGGAATCCATCAAAAGACTaGAAGGACTTGAGCCGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: CPKAKERGKITVIAPVGGNPSKD*KDLSRA Trigger: AGCCCGGCTCAAGTCCTTTCAGTCTTTTGATGGATT...CCCTCCGACTGGCGCTATCACCGTTATCTTGCCTCTCTCCTTGGCCTTAGGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213153.2 |
||
| CDS-3UTR CCA 90 bp | ACAAACAAGCCCATAGCTTGTTTGACTTTTACAGGCCCACAGCTAGAGAGAATTGGCCACCCCGAGGTCTaGCTCCGGCTCCTCTGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: TNKPIACLTFTGPQLERIGHPEV*LRLLCH Trigger: ATGGCAGAGGAGCCGGAGCCAGACCTCGGGGTGGCC...AATTCTCTCTAGCTGTGGGCCTGTAAAAGTCAAACAAGCTATGGGCTTGTTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| CDS-3UTR TCA 90 bp | TGCCCTAAGGCCAAGGAGAGAGGCAAGATAACGGTGATAGCGCCAGTCGGAGGGGTCAAAAGTTGTTCTTaGTTCTTTTGGCCACTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: CPKAKERGKITVIAPVGGVKSCS*FFWPLE Trigger: CTCCAGTGGCCAAAAGAATCAAGAACAACTTTTGAC...CCCTCCGACTGGCGCTATCACCGTTATCTTGCCTCTCTCCTTGGCCTTAGGGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| CDS-3UTR CCA 90 bp | GCCTATGAGTGCTCTCGATGTCTGCATTCAGCAGCAGGTCTGCCCCTGCTTCATTTTGTGAAACCAGTCTaGATGGCTGAATCCCAGTCC | + |
|
Preference number: 4 (lower is better) Translates to: AYECSRCLHSAAGLPLLHFVKPV*MAESQS Trigger: GGACTGGGATTCAGCCATCCAGACTGGTTTCACAAA...ATGAAGCAGGGGCAGACCTGCTGCTGAATGCAGACATCGAGAGCACTCATAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
||
| CDS-3UTR TCA 90 bp | AGGACCCATTTACAGATTTGTCTGAATGCTCTGGATCTAAATAAAGCTACCTACCAAGGCCTGATCCTCTaGGCCCTCGGCCACCCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: RTHLQICLNALDLNKATYQGLIL*ALGHPE Trigger: CTCGGGGTGGCCGAGGGCTCAGAGGATCAGGCCTTG...GTAGGTAGCTTTATTTAGATCCAGAGCATTCAGACAAATCTGTAAATGGGTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
||
| CDS-3UTR TCA 90 bp | GGCCCGTTAGTTTTCCTTCTCTATGGTTTCCATTTGAAAGGGGATGTTCCTCCTACCAGTCTGGATGGCTaGATCCCAGTCCAGGGACTC | + |
|
Preference number: 4 (lower is better) Translates to: GPLVFLLYGFHLKGDVPPTSLDG*IPVQGL Trigger: GAGTCCCTGGACTGGGATTCAGCCATCCAGACTGGT...AGGAGGAACATCCCCTTTCAAATGGAAACCATAGAGAAGGAAAACTAACGGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| 3UTR CAA 72 bp | GCGCCATCTAACAGCTGCCAGGGATCTGAGTGTGACTaGATCTTCCCAATAACAAGACTTAGTGCAAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: APSNSCQGSECD*IFPITRLSARR Trigger: CCTCCTTGCACTAAGTCTTGTTATTGGGAAGATCAAGTCACACTCAGATCCCTGGCAGCTGTTAGATGGCGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| CDS-3UTR TCA 90 bp | ATTACCATTTTCAGTGTTATTAAGGAAGGGAGAGCATCTGAATGCCCTAAGGCCACCAGTCTGGATGGCTaGATCCCAGTCCAGGGACTC | + |
|
Preference number: 4 (lower is better) Translates to: ITIFSVIKEGRASECPKATSLDG*IPVQGL Trigger: GAGTCCCTGGACTGGGATTCAGCCATCCAGACTGGT...GGCCTTAGGGCATTCAGATGCTCTCCCTTCCTTAATAACACTGAAAATGGTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
||
| CDS-3UTR TCA 90 bp | TTGTGTGCCAGGAGCTTATTACCACAGTTGGAATGGAATGAATGGAAAAACCAGCTCACTGAAAGGACTTaGGCCGGGCTCCACGTAGCT | + |
|
Preference number: 4 (lower is better) Translates to: LCARSLLPQLEWNEWKNQLTERT*AGLHVA Trigger: AGCTACGTGGAGCCCGGCTCAAGTCCTTTCAGTGAG...CTGGTTTTTCCATTCATTCCATTCCAACTGTGGTAATAAGCTCCTGGCACACAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| CDS-3UTR TCA 90 bp | CTCTATGGTTTCCATTTGAAAGGGGATGTTCCTCCTTTGCATGTCACAATGTTGCTCACTGAAAGGACTTaGGCCGGGCTCCACGTAGCT | + |
|
Preference number: 4 (lower is better) Translates to: LYGFHLKGDVPPLHVTMLLTERT*AGLHVA Trigger: AGCTACGTGGAGCCCGGCTCAAGTCCTTTCAGTGAG...CAACATTGTGACATGCAAAGGAGGAACATCCCCTTTCAAATGGAAACCATAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| 3UTR CAA 72 bp | CAGGTATCAAGGGCCCAATTCCTGTCCAGGAAAACTTaGGGGATCCAACATCCATCTCATTCCAATAGACCC | + |
|
Preference number: 4 (lower is better) Translates to: QVSRAQFLSRKT*GIQHPSHSNRP Trigger: GGGTCTATTGGAATGAGATGGATGTTGGATCCCCAAAGTTTTCCTGGACAGGAATTGGGCCCTTGATACCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| 3UTR CAA 72 bp | TGCATTCAGCAGCAGGTCTGCCCCTGCTTCATTTCTTaGCTTCCTTATTTGTTCTCGACGGAGGGCTCATTT | + |
|
Preference number: 4 (lower is better) Translates to: CIQQQVCPCFIS*LPYLFSTEGSF Trigger: AAATGAGCCCTCCGTCGAGAACAAATAAGGAAGCAAAGAAATGAAGCAGGGGCAGACCTGCTGCTGAATGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213153.2 |
||
| CDS-3UTR TCA 90 bp | ACCCATTTACAGATTTGTCTGAATGCTCTGGATCTAAATAAAGCTACCTACAAAGGCATCTCCAAGGCCTaGTCCTCTGAGCCCTCGGCC | + |
|
Preference number: 4 (lower is better) Translates to: THLQICLNALDLNKATYKGISKA*SSEPSA Trigger: GGCCGAGGGCTCAGAGGATCAGGCCTTGGAGATGCC...TTTGTAGGTAGCTTTATTTAGATCCAGAGCATTCAGACAAATCTGTAAATGGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
||
| CDS-3UTR TCA 90 bp | TCCTCTTCTCTAACAGAGGGTGCTCAGCTGTGGATTAGTGTGAAGTTTGACTGGAGCCATTCAATTTTGTaGAACCAGTCTGGATGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SSSLTEGAQLWISVKFDWSHSIL*NQSGWL Trigger: CAGCCATCCAGACTGGTTTCACAAAATTGAATGGCT...CCAGTCAAACTTCACACTAATCCACAGCTGAGCACCCTCTGTTAGAGAAGAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| 3UTR CAA 72 bp | CTCACAGGTTTGTGTGCCAGGAGCTTATTACCACAGTaGGAATGGAATGAATGGAAAAACCAGGTCAGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: LTGLCARSLLPQ*EWNEWKNQVSL Trigger: GAGGCTGACCTGGTTTTTCCATTCATTCCATTCCAACTGTGGTAATAAGCTCCTGGCACACAAACCTGTGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| CDS-3UTR TCA 90 bp | GGCCCGTTAGTTTTCCTTCTCTATGGTTTCCATTTGAAAGGGGATGTTCCTCCTAGCCATTCAATTTTGTaGAACCAGTCTGGATGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GPLVFLLYGFHLKGDVPPSHSIL*NQSGWL Trigger: CAGCCATCCAGACTGGTTTCACAAAATTGAATGGCT...AGGAGGAACATCCCCTTTCAAATGGAAACCATAGAGAAGGAAAACTAACGGGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| 3UTR CAA 72 bp | GAGGGGACAGTTGTTATTAGAGCAGTGGTTCTTAACTaGTGGGTCACTATTCCTTCGGGGTTGAATGACCTT | + |
|
Preference number: 4 (lower is better) Translates to: EGTVVIRAVVLN*WVTIPSGLNDL Trigger: AAGGTCATTCAACCCCGAAGGAATAGTGACCCACAAGTTAAGAACCACTGCTCTAATAACAACTGTCCCCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| 3UTR CAA 72 bp | AATCTAGTAGACGGTTCTTATGGAAGGGTGAGATGCTaGTGGACTGGTGAATGCACACAGGTAAAACCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: NLVDGSYGRVRC*WTGECTQVKPA Trigger: TGCTGGTTTTACCTGTGTGCATTCACCAGTCCACAAGCATCTCACCCTTCCATAAGAACCGTCTACTAGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| CDS-3UTR GCA 90 bp | AAGGAAGGGAGAGCATCTGAATGCCCTAAGGCCAAGGAGAGAGGCAAGATAACGTCTCTTTCTCATTTTTaGCTTGAATGTAGCCATTCA | + |
|
Preference number: 4 (lower is better) Translates to: KEGRASECPKAKERGKITSLSHF*LECSHS Trigger: TGAATGGCTACATTCAAGGCAAAAATGAGAAAGAGA...CGTTATCTTGCCTCTCTCCTTGGCCTTAGGGCATTCAGATGCTCTCCCTTCCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
||
| CDS-3UTR CCA 90 bp | TCTTCTCTAACAGAGGGTGCTCAGCTGTGGATTAGTGTGAAGTTTGACTGGGAAGATTCTTTTGGCCACTaGAGAATCCATCAAAAGACC | + |
|
Preference number: 4 (lower is better) Translates to: SSLTEGAQLWISVKFDWEDSFGH*RIHQKT Trigger: GGTCTTTTGATGGATTCTCCAGTGGCCAAAAGAATC...TTCCCAGTCAAACTTCACACTAATCCACAGCTGAGCACCCTCTGTTAGAGAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| 3UTR CAA 72 bp | AAGGAGGTGATTCTAAACCTAACAACTTTGCTGGGCTaGGGGGTATCCAGAATCATGAGACTCAGATATGTC | + |
|
Preference number: 4 (lower is better) Translates to: KEVILNLTTLLG*GVSRIMRLRYV Trigger: GACATATCTGAGTCTCATGATTCTGGATACCCCCAAGCCCAGCAAAGTTGTTAGGTTTAGAATCACCTCCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| CDS-3UTR CCA 90 bp | GCATTCAGCAGCAGGTCTGCCCCTGCTTCATTTCTTTGCTTCCTTATTTGTTCTGATTCTTTTGGCCACTaGAGAATCCATCAAAAGACT | + |
|
Preference number: 4 (lower is better) Translates to: AFSSRSAPASFLCFLICSDSFGH*RIHQKT Trigger: AGTCTTTTGATGGATTCTCCAGTGGCCAAAAGAATC...AGAACAAATAAGGAAGCAAAGAAATGAAGCAGGGGCAGACCTGCTGCTGAATGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000213153.2 |
||
| 3UTR CAA 72 bp | ATGTCACAATGTTGTACAAACAAGCCCATAGCTTGTTaGACTTTTACAGGCCCACAGCTAGAGAGAATTTGC | + |
|
Preference number: 4 (lower is better) Translates to: MSQCCTNKPIAC*TFTGPQLERIC Trigger: GCAAATTCTCTCTAGCTGTGGGCCTGTAAAAGTCAAACAAGCTATGGGCTTGTTTGTACAACATTGTGACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| 3UTR CAA 72 bp | TTGCATGTCACAATGTTGTACAAACAAGCCCATAGCTaGTTTGACTTTTACAGGCCCACAGCTAGAGAGAAT | + |
|
Preference number: 4 (lower is better) Translates to: LHVTMLYKQAHS*FDFYRPTAREN Trigger: ATTCTCTCTAGCTGTGGGCCTGTAAAAGTCAAACAAGCTATGGGCTTGTTTGTACAACATTGTGACATGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
||
| CDS-3UTR TCA 90 bp | AATCCATCATTACCATTTTCAGTGTTATTAAGGAAGGGAGAGCATCTGAATGCCGAGGGCTCATTTTTCTaGATCAGCCACACTTCGTTA | + |
|
Preference number: 4 (lower is better) Translates to: NPSLPFSVLLRKGEHLNAEGSFF*ISHTSL Trigger: TAACGAAGTGTGGCTGATTCAGAAAAATGAGCCCTC...GGCATTCAGATGCTCTCCCTTCCTTAATAACACTGAAAATGGTAATGATGGATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
||
| CDS-3UTR GCA 90 bp | GCATTCAGCAGCAGGTCTGCCCCTGCTTCATTTCTTTGCTTCCTTATTTGTTCTTCTCTTTCTCATTTTTaGCTTGAATGTAGCCATTCA | + |
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Preference number: 4 (lower is better) Translates to: AFSSRSAPASFLCFLICSSLSHF*LECSHS Trigger: TGAATGGCTACATTCAAGGCAAAAATGAGAAAGAGA...AGAACAAATAAGGAAGCAAAGAAATGAAGCAGGGGCAGACCTGCTGCTGAATGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213153.2 |
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| CDS-3UTR CCA 90 bp | TTAGGGAGACTGAGAACCGCTGATCTAGAGAGTTTAATTTTACAAAGATACCTTTTTGTGAAACCAGTCTaGATGGCTGAATCCCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: LGRLRTADLESLILQRYLFVKPV*MAESQS Trigger: GGACTGGGATTCAGCCATCCAGACTGGTTTCACAAA...AAGGTATCTTTGTAAAATTAAACTCTCTAGATCAGCGGTTCTCAGTCTCCCTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020000.7 |
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| 3UTR CAA 72 bp | TTGAAAGGGGATGTTCCTCCTTTGCATGTCACAATGTaGTACAAACAAGCCCATAGCTTGTTTGACTTTTAC | + |
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Preference number: 4 (lower is better) Translates to: LKGDVPPLHVTM*YKQAHSLFDFY Trigger: GTAAAAGTCAAACAAGCTATGGGCTTGTTTGTACAACATTGTGACATGCAAAGGAGGAACATCCCCTTTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| CDS-3UTR GCA 90 bp | CTAGAGAGAATTTGCTTTGAGATAAGTCATGCTTTGAGTCTCAAGCCAGATTTTTCTCTTTCTCATTTTTaGCTTGAATGTAGCCATTCA | + |
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Preference number: 4 (lower is better) Translates to: LERICFEISHALSLKPDFSLSHF*LECSHS Trigger: TGAATGGCTACATTCAAGGCAAAAATGAGAAAGAGA...AAAATCTGGCTTGAGACTCAAAGCATGACTTATCTCAAAGCAAATTCTCTCTAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| 3UTR CAA 72 bp | CCCAAACAGACTAGGACAGACACCATATGCTGTTTTTaGAAGGCATTATTGTTCAGATCTATCTATTTTGTA | + |
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Preference number: 4 (lower is better) Translates to: PKQTRTDTICCF*KALLFRSIYFV Trigger: TACAAAATAGATAGATCTGAACAATAATGCCTTCAAAAAACAGCATATGGTGTCTGTCCTAGTCTGTTTGGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| CDS TCA 90 bp | GTCCTCCGGAGCTTTCCAGCTCGGCATCTCCAAGGCCTGATCCTCTaGGCCCTCGGCCACCCCGAGGTCTGGCTCCGGCTCCTCTGCCAT | + |
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Preference number: 5 (lower is better) Translates to: VLRSFPARHLQGLIL*ALGHPEVWLRLLCH Trigger: ATGGCAGAGGAGCCGGAGCCAGACCTCGGGGTGGCCGAGGGCTCAGAGGATCAGGCCTTGGAGATGCCGAGCTGGAAAGCTCCGGAGGAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 ENSMUST00000214548.2 |
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| CDS TCA 90 bp | GGGTCTATGTCCTCCGGAGCTTTCCAGCTCGGCATCTCCAAGGCCTaGTCCTCTGAGCCCTCGGCCACCCCGAGGTCTGGCTCCGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: GSMSSGAFQLGISKA*SSEPSATPRSGSGS Trigger: GGAGCCGGAGCCAGACCTCGGGGTGGCCGAGGGCTCAGAGGATCAGGCCTTGGAGATGCCGAGCTGGAAAGCTCCGGAGGACATAGACCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 ENSMUST00000214548.2 |
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| CDS CCA 90 bp | GCTGACCCACTTAGCCGGTCCGTAGTGCCGGATCTCATAACTTCCTaGCTGGGGGTCTATGTCCTCCGGAGCTTTCCAGCTCGGCATCTC | + |
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Preference number: 5 (lower is better) Translates to: ADPLSRSVVPDLITS*LGVYVLRSFPARHL Trigger: GAGATGCCGAGCTGGAAAGCTCCGGAGGACATAGACCCCCAGCCAGGAAGTTATGAGATCCGGCACTACGGACCGGCTAAGTGGGTCAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 ENSMUST00000214548.2 |
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| CDS-3UTR CAA 90 bp | CCTATGAGTGCTCTCGATGTCTGCATTCAGCAGCAGGTCTGCCCCTGCTTCATTACGGGGGCTGTCAGCTaGATTTTCATCTCTTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: PMSALDVCIQQQVCPCFITGAVS*IFISFS Trigger: TGAGAAAGAGATGAAAATCAAGCTGACAGCCCCCGT...AATGAAGCAGGGGCAGACCTGCTGCTGAATGCAGACATCGAGAGCACTCATAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
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| CDS-3UTR CAA 90 bp | AGGACCCATTTACAGATTTGTCTGAATGCTCTGGATCTAAATAAAGCTACCTACCGGGCTCCACGTAGCTaGTCACGGGGGCTGTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: RTHLQICLNALDLNKATYRAPRS*SRGLSA Trigger: AGCTGACAGCCCCCGTGACAAGCTACGTGGAGCCCG...GTAGGTAGCTTTATTTAGATCCAGAGCATTCAGACAAATCTGTAAATGGGTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
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| CDS-3UTR CAA 90 bp | TTACAGATTTGTCTGAATGCTCTGGATCTAAATAAAGCTACCTACAAAGGCACACGGGCTCCACGTAGCTaGTCACGGGGGCTGTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: LQICLNALDLNKATYKGTRAPRS*SRGLSA Trigger: AGCTGACAGCCCCCGTGACAAGCTACGTGGAGCCCG...TGTGCCTTTGTAGGTAGCTTTATTTAGATCCAGAGCATTCAGACAAATCTGTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
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| CDS-3UTR CAA 90 bp | GCTGCCCTTTTCAAAGAAGAGCAAAGCCCATGTCTACCGTATTCAACAATGTCTACGGGGGCTGTCAGCTaGATTTTCATCTCTTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: AALFKEEQSPCLPYSTMSTGAVS*IFISFS Trigger: TGAGAAAGAGATGAAAATCAAGCTGACAGCCCCCGT...AGACATTGTTGAATACGGTAGACATGGGCTTTGCTCTTCTTTGAAAAGGGCAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000214548.2 |
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| CDS-3UTR CAA 90 bp | ACCCATTTACAGATTTGTCTGAATGCTCTGGATCTAAATAAAGCTACCTACAAAACGGGGGCTGTCAGCTaGATTTTCATCTCTTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: THLQICLNALDLNKATYKTGAVS*IFISFS Trigger: TGAGAAAGAGATGAAAATCAAGCTGACAGCCCCCGT...TTTGTAGGTAGCTTTATTTAGATCCAGAGCATTCAGACAAATCTGTAAATGGGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 |
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| CDS TCA 72 bp | AGCTTTCCAGCTCGGCATCTCCAAGGCCTGATCCTCTaGGCCCTCGGCCACCCCGAGGTCTGGCTCCGGCTC | + |
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Preference number: 6 (lower is better) Translates to: SFPARHLQGLIL*ALGHPEVWLRL Trigger: GAGCCGGAGCCAGACCTCGGGGTGGCCGAGGGCTCAGAGGATCAGGCCTTGGAGATGCCGAGCTGGAAAGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 ENSMUST00000214548.2 |
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| CDS TCA 72 bp | TCCTCCGGAGCTTTCCAGCTCGGCATCTCCAAGGCCTaGTCCTCTGAGCCCTCGGCCACCCCGAGGTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: SSGAFQLGISKA*SSEPSATPRSG Trigger: GCCAGACCTCGGGGTGGCCGAGGGCTCAGAGGATCAGGCCTTGGAGATGCCGAGCTGGAAAGCTCCGGAGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 ENSMUST00000214548.2 |
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| CDS CCA 72 bp | CTTAGCCGGTCCGTAGTGCCGGATCTCATAACTTCCTaGCTGGGGGTCTATGTCCTCCGGAGCTTTCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: LSRSVVPDLITS*LGVYVLRSFPA Trigger: AGCTGGAAAGCTCCGGAGGACATAGACCCCCAGCCAGGAAGTTATGAGATCCGGCACTACGGACCGGCTAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020000.7 ENSMUST00000213153.2 ENSMUST00000214548.2 |
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