RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HEATR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050244

Ensembl transcript IDs: ENSMUST00000059270.10, ENSMUST00000221046.2, ENSMUST00000222091.2

Found 394 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATGAGTGGAAGAAACTGCTCATTAAGCAAAGCCACTCCATTAGCCTaGGTTTCCTCCTGGGAACTGTATGAAATATATTCTTCAAAAAGA +
Preference number: 1 (lower is better)
Translates to: MSGRNCSLSKATPLA*VSSWELYEIYSSKR
Trigger: TCTTTTTGAAGAATATATTTCATACAGTTCCCAGGAGGAAACCCAGGCTAATGGAGTGGCTTTGCTTAATGAGCAGTTTCTTCCACTCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
3UTR-3UTR CCA 90 bp CTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTCCAGAGCACAGGCGGTaGGCAGATGCGCTTTCTGCC +
Preference number: 2 (lower is better)
Translates to: LCTKGRRGFCGIPDRQGFPEHRR*ADALSA
Trigger: GGCAGAAAGCGCATCTGCCCACCGCCTGTGCTCTGG...AAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
3UTR CCA 72 bp TTCTGCTGGTTGATTGGCGCTCAAGTCCAGGGTGTGTaGGTACCGAAAGTAACATGGCACCACACCCCCATT +
Preference number: 3 (lower is better)
Translates to: FCWLIGAQVQGV*VPKVTWHHTPI
Trigger: AATGGGGGTGTGGTGCCATGTTACTTTCGGTACCCACACACCCTGGACTTGAGCGCCAATCAACCAGCAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
3UTR TCA 72 bp AAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTaGTTGGCGCTCAAGTCCAGGGTGTGTGGGTACCGA +
Preference number: 3 (lower is better)
Translates to: KQVFCSKQISAG*LALKSRVCGYR
Trigger: TCGGTACCCACACACCCTGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
3UTR CCA 72 bp AAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTaGCGCTCAAGTCCAGGGTGTGTGGGTACCGAAAGT +
Preference number: 3 (lower is better)
Translates to: KCSAPSRFLLVD*RSSPGCVGTES
Trigger: ACTTTCGGTACCCACACACCCTGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
3UTR CCA 72 bp GACAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTaGTTGATTGGCGCTCAAGTCCAGGGTGTGTGGGTA +
Preference number: 3 (lower is better)
Translates to: DKTSVLLQADFC*LIGAQVQGVWV
Trigger: TACCCACACACCCTGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
3UTR CCA 72 bp AGAAACTGCTCATTAAGCAAAGCCACTCCATTAGCCTaGGTTTCCTCCTGGGAACTGTATGAAATATATTCT +
Preference number: 3 (lower is better)
Translates to: RNCSLSKATPLA*VSSWELYEIYS
Trigger: AGAATATATTTCATACAGTTCCCAGGAGGAAACCCAGGCTAATGGAGTGGCTTTGCTTAATGAGCAGTTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR TCA 90 bp AACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTGGGCAGATGCGCAGGCTGGGATCAGTTTaGGGGAGGGCGAGTCGCTGG +
Preference number: 4 (lower is better)
Translates to: NMRMSVTSSQSTGGGQMRRLGSV*GRASRW
Trigger: CCAGCGACTCGCCCTCCCTCAAACTGATCCCAGCCT...GCGCATCTGCCCACCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp ACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTCCAGGGGCAGCCAGGGCGCTaGGCAGGCAGACCTCACTGT +
Preference number: 4 (lower is better)
Translates to: TSVLLQADFCWLIGAQVQGQPGR*AGRPHC
Trigger: ACAGTGAGGTCTGCCTGCTCAGCGCCCTGGCTGCCC...CTGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp AGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGGGAGGGCGAGTCGCTaGAGCTGCTGGGCTAAGGAC +
Preference number: 4 (lower is better)
Translates to: SNSVQKAGEDSVVSQTGRGRASR*SCWAKD
Trigger: GTCCTTAGCCCAGCAGCTCCAGCGACTCGCCCTCCC...CCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGATCAGGCTGGGCAGCTaGGGGATGGCCAGCGCTTCC +
Preference number: 4 (lower is better)
Translates to: SNSVQKAGEDSVVSQTGRIRLGS*GMASAS
Trigger: GGAAGCGCTGGCCATCCCCCAGCTGCCCAGCCTGAT...CCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp ACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTGAGGGTACCCCTCTaGGGGCCTGGAGACACTGGA +
Preference number: 4 (lower is better)
Translates to: TLYKRQERILWYPRQAGILRVPL*GPGDTG
Trigger: TCCAGTGTCTCCAGGCCCTCAGAGGGGTACCCTCAA...AATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp ACACCCCCATTAAAACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGGTCTCAACGACTTTGTaGAGGGCAGCCAGGGCGCTG +
Preference number: 4 (lower is better)
Translates to: TPPLKHENECDFFPEHRRVSTTL*RAARAL
Trigger: CAGCGCCCTGGCTGCCCTGCACAAAGTCGTTGAGAC...CCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTTTTAATGGGGGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp ACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTACAGAGGCCACCAGATaGGGAAGCATGCAGCGCAGG +
Preference number: 4 (lower is better)
Translates to: TLYKRQERILWYPRQAGITEATR*GSMQRR
Trigger: CCTGCGCTGCATGCTTCCCCATCTGGTGGCCTCTGT...AATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGCTAGCTGAACAAGGATaGGCAGGCGCCTGTGTTCTG +
Preference number: 4 (lower is better)
Translates to: ATLYKRQERILWYPRQAGLAEQG*AGACVL
Trigger: CAGAACACAGGCGCCTGCCCATCCTTGTTCAGCTAG...CCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp CATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGCCAGATGGGGAAGCATaGAGCGCAGGAGAGGGCTCA +
Preference number: 4 (lower is better)
Translates to: HPVYSLATLYKRQERILWPDGEA*SAGEGS
Trigger: TGAGCCCTCTCCTGCGCTGCATGCTTCCCCATCTGG...CCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp AGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGAGAGGCGGATGCACTaGACTATCAGCTCCACGTTG +
Preference number: 4 (lower is better)
Translates to: SNSVQKAGEDSVVSQTGRERRMH*TISSTL
Trigger: CAACGTGGAGCTGATAGTGCAGTGCATCCGCCTCTC...CCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp AGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGCCCTGTTCAAGTCCGTaGAGGCTCTTAGGACCACCA +
Preference number: 4 (lower is better)
Translates to: SNSVQKAGEDSVVSQTGRPCSSP*RLLGPP
Trigger: TGGTGGTCCTAAGAGCCTGCACGGACTTGAACAGGG...CCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp ACACCCCCATTAAAACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGAGTGGACGTCACCTCTaGTATGCACAGCAGGGCGCT +
Preference number: 4 (lower is better)
Translates to: TPPLKHENECDFFPEHRRSGRHL*YAQQGA
Trigger: AGCGCCCTGCTGTGCATAGCAGAGGTGACGTCCACT...CCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTTTTAATGGGGGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp AACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTGGGCAGATGCGCCTAGAGCAGACACAATaGTGGAGGCATAGAAGGCCA +
Preference number: 4 (lower is better)
Translates to: NMRMSVTSSQSTGGGQMRLEQTQ*WRHRRP
Trigger: TGGCCTTCTATGCCTCCACCATTGTGTCTGCTCTAG...GCGCATCTGCCCACCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTGGGCAGATGCGCCAAGTTGAAGAGGGGTaGGATCAGTATCTGAGGGCA +
Preference number: 4 (lower is better)
Translates to: NMRMSVTSSQSTGGGQMRQVEEG*DQYLRA
Trigger: TGCCCTCAGATACTGATCCCACCCCTCTTCAACTTG...GCGCATCTGCCCACCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp ACACCCCCATTAAAACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGCCAGCGCTTCCAGAGTaGACGTCACCTCTGCTATGC +
Preference number: 4 (lower is better)
Translates to: TPPLKHENECDFFPEHRRPALPE*TSPLLC
Trigger: GCATAGCAGAGGTGACGTCCACTCTGGAAGCGCTGG...CCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTTTTAATGGGGGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp AGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTCCAGGGTAGGCAGACCTCACTGTaGACCAACTCACTGGTGCTC +
Preference number: 4 (lower is better)
Translates to: SVLLQADFCWLIGAQVQGRQTSL*TNSLVL
Trigger: GAGCACCAGTGAGTTGGTCCACAGTGAGGTCTGCCT...ACCCTGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR TCA 90 bp ACACCCCCATTAAAACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTTCCAGGTGCCACTCTaGGGGGATTTCCACAGCAGT +
Preference number: 4 (lower is better)
Translates to: TPPLKHENECDFFPEHRRFQVPL*GDFHSS
Trigger: ACTGCTGTGGAAATCCCCTCAGAGTGGCACCTGGAA...CCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTTTTAATGGGGGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTGGGCAGATGCGCGGCCAGCAAACAGAGTaGAAAGGCCTTTCAACTTCT +
Preference number: 4 (lower is better)
Translates to: NMRMSVTSSQSTGGGQMRGQQTE*KGLSTS
Trigger: AGAAGTTGAAAGGCCTTTTCACTCTGTTTGCTGGCC...GCGCATCTGCCCACCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR GCA 90 bp CATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGACGTCACCTCTGCTATaGACAGCAGGGCGCTTCCCA +
Preference number: 4 (lower is better)
Translates to: HPVYSLATLYKRQERILWTSPLL*TAGRFP
Trigger: TGGGAAGCGCCCTGCTGTGCATAGCAGAGGTGACGT...CCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp GTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCGTCTCAACGACTTTGTaGAGGGCAGCCAGGGCGCTG +
Preference number: 4 (lower is better)
Translates to: VYSLATLYKRQERILWYPVSTTL*RAARAL
Trigger: CAGCGCCCTGGCTGCCCTGCACAAAGTCGTTGAGAC...GGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AAAGCCACTCCATTAGCCTGGGTTTCCTCCTGGGAACTGTATGAAATATATTCTGGGAGGGCGAGTCGCTaGAGCTGCTGGGCTAAGGAC +
Preference number: 4 (lower is better)
Translates to: KATPLAWVSSWELYEIYSGRASR*SCWAKD
Trigger: GTCCTTAGCCCAGCAGCTCCAGCGACTCGCCCTCCC...AGAATATATTTCATACAGTTCCCAGGAGGAAACCCAGGCTAATGGAGTGGCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp ACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTCACTGCTTTGGTCTaGACGCTGCGCTCCAAGCCT +
Preference number: 4 (lower is better)
Translates to: TLYKRQERILWYPRQAGIFTALV*TLRSKP
Trigger: AGGCTTGGAGCGCAGCGTCCAGACCAAAGCAGTGAA...AATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp ATGAGTGGAAGAAACTGCTCATTAAGCAAAGCCACTCCATTAGCCTGGGTTTCCACAGAGGCCACCAGATaGGGAAGCATGCAGCGCAGG +
Preference number: 4 (lower is better)
Translates to: MSGRNCSLSKATPLAWVSTEATR*GSMQRR
Trigger: CCTGCGCTGCATGCTTCCCCATCTGGTGGCCTCTGT...GGAAACCCAGGCTAATGGAGTGGCTTTGCTTAATGAGCAGTTTCTTCCACTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp GCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTGTAAAAACATTAACCCCTCTGAGGGCCTaGAGACACTGGACGGCAGCT +
Preference number: 4 (lower is better)
Translates to: AGEDSVVSQTGRDFVKTLTPLRA*RHWTAA
Trigger: AGCTGCCGTCCAGTGTCTCCAGGCCCTCAGAGGGGT...TAATGTTTTTACAAAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTGGGCAGATGCGCTGCAGTGCTGAGAACTaGTATGAAAGGCTCTCGGTT +
Preference number: 4 (lower is better)
Translates to: NMRMSVTSSQSTGGGQMRCSAEN*YERLSV
Trigger: AACCGAGAGCCTTTCATACCAGTTCTCAGCACTGCA...GCGCATCTGCCCACCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR TCA 90 bp TATTCTTCAAAAAGATGGCTAGCCAGTAGGTGGTCTAAGTTGTTCGTCAGTGGTAGGCTGGGATCAGTTTaGGGGAGGGCGAGTCGCTGG +
Preference number: 4 (lower is better)
Translates to: YSSKRWLASRWSKLFVSGRLGSV*GRASRW
Trigger: CCAGCGACTCGCCCTCCCTCAAACTGATCCCAGCCT...ACCACTGACGAACAACTTAGACCACCTACTGGCTAGCCATCTTTTTGAAGAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR TCA 90 bp AACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTGCTGCCCAGCAGCTaGACCATCTTCTGGTTTCCT +
Preference number: 4 (lower is better)
Translates to: NSVQKAGEDSVVSQTGRDLLPSS*TIFWFP
Trigger: AGGAAACCAGAAGATGGTTCAGCTGCTGGGCAGCAA...ATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTGGGCAGATGCGCGCTCCAGTTCTATTCTaGTTTGTTCAGCATCGACAG +
Preference number: 4 (lower is better)
Translates to: NMRMSVTSSQSTGGGQMRAPVLF*FVQHRQ
Trigger: CTGTCGATGCTGAACAAATCAGAATAGAACTGGAGC...GCGCATCTGCCCACCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp GTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCAGGGCAGCCAGGGCGCTaGGCAGGCAGACCTCACTGT +
Preference number: 4 (lower is better)
Translates to: VKTLSIGRCESTESNMAPGQPGR*AGRPHC
Trigger: ACAGTGAGGTCTGCCTGCTCAGCGCCCTGGCTGCCC...TGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp AGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGCATTCCAGACACTTCTaGGCTGGCTTGAGGAGGAAA +
Preference number: 4 (lower is better)
Translates to: SNSVQKAGEDSVVSQTGRHSRHF*AGLRRK
Trigger: TTTCCTCCTCAAGCCAGCGCAGAAGTGTCTGGAATG...CCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp AGCAAAGCCACTCCATTAGCCTGGGTTTCCTCCTGGGAACTGTATGAAATATATCCAGATGGGGAAGCATaGAGCGCAGGAGAGGGCTCA +
Preference number: 4 (lower is better)
Translates to: SKATPLAWVSSWELYEIYPDGEA*SAGEGS
Trigger: TGAGCCCTCTCCTGCGCTGCATGCTTCCCCATCTGG...ATATATTTCATACAGTTCCCAGGAGGAAACCCAGGCTAATGGAGTGGCTTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR GCA 90 bp CTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTACACACAGGAGCTTCTaGTGGACCTGTCCATCTGAC +
Preference number: 4 (lower is better)
Translates to: LCTKGRRGFCGIPDRQGFTHRSF*WTCPSD
Trigger: GTCAGATGGACAGGTCCAGCAGAAGCTCCTGTGTGT...AAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp CAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTACGTCACCTCTGCTATaGACAGCAGGGCGCTTCCCA +
Preference number: 4 (lower is better)
Translates to: QNKCSAPSRFLLVDWRSSTSPLL*TAGRFP
Trigger: TGGGAAGCGCCCTGCTGTGCATAGCAGAGGTGACGT...ACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp CATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGGTCTCGATAGGAGGCTaGGATCAGTTTGAGGGAGGG +
Preference number: 4 (lower is better)
Translates to: HPVYSLATLYKRQERILWVSIGG*DQFEGG
Trigger: CCCTCCCTCAAACTGATCCCAGCCTCCTATCGAGAC...CCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGCAGACACTTCTGCGCTaGCTTGAGGAGGAAATAAGG +
Preference number: 4 (lower is better)
Translates to: SNSVQKAGEDSVVSQTGRQTLLR*LEEEIR
Trigger: CCTTATTTCCTCCTCAAGCCAGCGCAGAAGTGTCTG...CCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp TCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTAGCACTCTCAACCGGGTaGAGCTTCCAGGATCCTCAG +
Preference number: 4 (lower is better)
Translates to: SGLLLSNSVQKAGEDSVVALSTG*SFQDPQ
Trigger: CTGAGGATCCTGGAAGCTCCACCCGGTTGAGAGTGC...TACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp ATGAGTGGAAGAAACTGCTCATTAAGCAAAGCCACTCCATTAGCCTGGGTTTCCGCACTCTCAACCGGGTaGAGCTTCCAGGATCCTCAG +
Preference number: 4 (lower is better)
Translates to: MSGRNCSLSKATPLAWVSALSTG*SFQDPQ
Trigger: CTGAGGATCCTGGAAGCTCCACCCGGTTGAGAGTGC...GGAAACCCAGGCTAATGGAGTGGCTTTGCTTAATGAGCAGTTTCTTCCACTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp CATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGACCATAGGCAGCAGCTaGGCAAGCACCATCTCACTG +
Preference number: 4 (lower is better)
Translates to: HPVYSLATLYKRQERILWTIGSS*ASTISL
Trigger: CAGTGAGATGGTGCTTGCCCAGCTGCTGCCTATGGT...CCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATCTTTCAGGACAGCTGTaGGCTCCTTCTCCACCTTCT +
Preference number: 4 (lower is better)
Translates to: NSVQKAGEDSVVSQTGRDLSGQL*APSPPS
Trigger: AGAAGGTGGAGAAGGAGCCCACAGCTGTCCTGAAAG...ATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACACTGGGCAGCTGGGGGATaGCCAGCGCTTCCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: KTLSIGRCESTESNMAPHWAAGG*PALPEW
Trigger: CCACTCTGGAAGCGCTGGCCATCCCCCAGCTGCCCA...GTGTGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTGGGCAGATGCGCCTGCTAGGAAAGGAATaGACTCTGGTAGCAGAACAA +
Preference number: 4 (lower is better)
Translates to: NMRMSVTSSQSTGGGQMRLLGKE*TLVAEQ
Trigger: TTGTTCTGCTACCAGAGTCCATTCCTTTCCTAGCAG...GCGCATCTGCCCACCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
3UTR CAA 72 bp AAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTaGATTGGCGCTCAAGTCCAGGGTGTGTGGGTACCG +
Preference number: 4 (lower is better)
Translates to: KTSVLLQADFCW*IGAQVQGVWVP
Trigger: CGGTACCCACACACCCTGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR TCA 90 bp ATAAAAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGAGCAGGGCATGGTGGTaGGTCTGCGGCATCTCCGAG +
Preference number: 4 (lower is better)
Translates to: IKIPSGLLLSNSVQKAGESRAWW*VCGISE
Trigger: CTCGGAGATGCCGCAGACTCACCACCATGCCCTGCT...CTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTTTTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTCCATGTCGTAAGCTTTGCTaGGCAGCGCTCGCCAAAACT +
Preference number: 4 (lower is better)
Translates to: NKCSAPSRFLLVDWRSSPCRKLC*AALAKT
Trigger: AGTTTTGGCGAGCGCTGCTCAGCAAAGCTTACGACA...TGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR GCA 90 bp GCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTGTAAAAACATTAAGTGGACGTCACCTCTaGTATGCACAGCAGGGCGCT +
Preference number: 4 (lower is better)
Translates to: AGEDSVVSQTGRDFVKTLSGRHL*YAQQGA
Trigger: AGCGCCCTGCTGTGCATAGCAGAGGTGACGTCCACT...TAATGTTTTTACAAAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp CATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTTGTGGCCGCCTCCTTaGGGTCAAATAACAGAGAGG +
Preference number: 4 (lower is better)
Translates to: HPVYSLATLYKRQERILWLWPPP*GQITER
Trigger: CCTCTCTGTTATTTGACCCCAAGGAGGCGGCCACAA...CCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTGTAAAAACATTATGTCCCTGTCGATTGTaGCCGCCTCCTTGGGGTCAA +
Preference number: 4 (lower is better)
Translates to: AGEDSVVSQTGRDFVKTLCPCRL*PPPWGQ
Trigger: TTGACCCCAAGGAGGCGGCCACAATCGACAGGGACA...TAATGTTTTTACAAAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GCCACTCCATTAGCCTGGGTTTCCTCCTGGGAACTGTATGAAATATATTCTTCATGTCCCTGTCGATTGTaGCCGCCTCCTTGGGGTCAA +
Preference number: 4 (lower is better)
Translates to: ATPLAWVSSWELYEIYSSCPCRL*PPPWGQ
Trigger: TTGACCCCAAGGAGGCGGCCACAATCGACAGGGACA...TGAAGAATATATTTCATACAGTTCCCAGGAGGAAACCCAGGCTAATGGAGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp GCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGCAGCTGGCTGAACAATaGCGCTTCAAACTGTTCAAA +
Preference number: 4 (lower is better)
Translates to: ATLYKRQERILWYPRQAGQLAEQ*RFKLFK
Trigger: TTTGAACAGTTTGAAGCGCCATTGTTCAGCCAGCTG...CCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATGTGTTCTGGCACATGTaGAAGTGCGTCCACAAAGAC +
Preference number: 4 (lower is better)
Translates to: NSVQKAGEDSVVSQTGRDVFWHM*KCVHKD
Trigger: GTCTTTGTGGACGCACTTCCACATGTGCCAGAACAC...ATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTGTAAAAACATTACCAGCGCTTCCAGAGTaGACGTCACCTCTGCTATGC +
Preference number: 4 (lower is better)
Translates to: AGEDSVVSQTGRDFVKTLPALPE*TSPLLC
Trigger: GCATAGCAGAGGTGACGTCCACTCTGGAAGCGCTGG...TAATGTTTTTACAAAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp TATGATGCTGAACACAGCAGAAAAACTGAGGCCAAAACCCTGAATTATGACAAATGGGCAGCTGGGGGATaGCCAGCGCTTCCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: YDAEHSRKTEAKTLNYDKWAAGG*PALPEW
Trigger: CCACTCTGGAAGCGCTGGCCATCCCCCAGCTGCCCA...TTTGTCATAATTCAGGGTTTTGGCCTCAGTTTTTCTGCTGTGTTCAGCATCATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp CAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTCCTCCAGCTGCTGGATaGTCTTCTGGCACTGATGCT +
Preference number: 4 (lower is better)
Translates to: QNKCSAPSRFLLVDWRSSPPAAG*SSGTDA
Trigger: AGCATCAGTGCCAGAAGACCATCCAGCAGCTGGAGG...ACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR TCA 90 bp CTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTTGAGTCTGCAGCTCTaGCTTCACAGTGCAGTTAAG +
Preference number: 4 (lower is better)
Translates to: LCTKGRRGFCGIPDRQGFLSLQL*LHSAVK
Trigger: CTTAACTGCACTGTGAAGTCAGAGCTGCAGACTCAA...AAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp CATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGCAGCCATACACACAGTaGAGAAGGCTTCTCAGGGTT +
Preference number: 4 (lower is better)
Translates to: HPVYSLATLYKRQERILWQPYTQ*RRLLRV
Trigger: AACCCTGAGAAGCCTTCTTCACTGTGTGTATGGCTG...CCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp ACACCCCCATTAAAACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGCTATCAGCTCCACGTTaGACTTCTCCTCATCCACAA +
Preference number: 4 (lower is better)
Translates to: TPPLKHENECDFFPEHRRLSAPR*TSPHPQ
Trigger: TTGTGGATGAGGAGAAGTTCAACGTGGAGCTGATAG...CCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTTTTAATGGGGGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp ACACCCCCATTAAAACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGGTGATTTTCTCTAGGTaGATCACCTGGGTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: TPPLKHENECDFFPEHRRVIFSR*ITWVRR
Trigger: CCTTCTGACCCAGGTGATTCACCTAGAGAAAATCAC...CCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTTTTAATGGGGGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR TCA 90 bp AGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTCCAGGGTATAAATGGGCCCATGTaGTTCTTCCAGTTCTTCTGG +
Preference number: 4 (lower is better)
Translates to: SVLLQADFCWLIGAQVQGINGPM*FFQFFW
Trigger: CCAGAAGAACTGGAAGAATCACATGGGCCCATTTAT...ACCCTGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR TCA 90 bp ACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTCCACTAGACAGTCAATaGTCCAACCTTCCGTTTTCC +
Preference number: 4 (lower is better)
Translates to: TLYKRQERILWYPRQAGIPLDSQ*SNLPFS
Trigger: GGAAAACGGAAGGTTGGATCATTGACTGTCTAGTGG...AATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp ACACCCCCATTAAAACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTTGGTTACCCGTTCCTaGAACCTTTCTTCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: TPPLKHENECDFFPEHRRLVTRS*NLSSPP
Trigger: TGGAGGAGAAGAAAGGTTTCAGGAACGGGTAACCAA...CCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTTTTAATGGGGGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR GCA 90 bp AGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTCCAGGGTTGTCTGTCTGTTAATTaGCTGTTCATCCTCTGCCTC +
Preference number: 4 (lower is better)
Translates to: SVLLQADFCWLIGAQVQGCLSVN*LFILCL
Trigger: GAGGCAGAGGATGAACAGGCAATTAACAGACAGACA...ACCCTGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR GCA 90 bp AACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTGGGCAGATGCGCTTCATCACCCCAATGTaGTCTTGTAAGATGCTCATA +
Preference number: 4 (lower is better)
Translates to: NMRMSVTSSQSTGGGQMRFITPM*SCKMLI
Trigger: TATGAGCATCTTACAAGAGCACATTGGGGTGATGAA...GCGCATCTGCCCACCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR GCA 90 bp AACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTGGGCAGATGCGCTCAACTTCTCAGCAATaGAGTCAGCCAGATTGTAAA +
Preference number: 4 (lower is better)
Translates to: NMRMSVTSSQSTGGGQMRSTSQQ*SQPDCK
Trigger: TTTACAATCTGGCTGACTGCATTGCTGAGAAGTTGA...GCGCATCTGCCCACCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp CATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGAAGCCTTTTGCCAGCTaGCTGAACAATGGCGCTTCA +
Preference number: 4 (lower is better)
Translates to: HPVYSLATLYKRQERILWKPFAS*LNNGAS
Trigger: TGAAGCGCCATTGTTCAGCCAGCTGGCAAAAGGCTT...CCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGGCCTGGGTTTCCTCCTaGGAACTGTATGAAATATAT +
Preference number: 4 (lower is better)
Translates to: ATLYKRQERILWYPRQAGAWVSS*ELYEIY
Trigger: ATATATTTCATACAGTTCCCAGGAGGAAACCCAGGC...CCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTGGGCAGATGCGCAGAGAAATGAACTGGTaGAACAGCTCCTGCTTTTTA +
Preference number: 4 (lower is better)
Translates to: NMRMSVTSSQSTGGGQMRREMNW*NSSCFL
Trigger: TAAAAAGCAGGAGCTGTTCCACCAGTTCATTTCTCT...GCGCATCTGCCCACCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCAAGGGCCTGGAGACACTaGACGGCAGCTCTGCGGACT +
Preference number: 4 (lower is better)
Translates to: VKTLSIGRCESTESNMAPRAWRH*TAALRT
Trigger: AGTCCGCAGAGCTGCCGTCCAGTGTCTCCAGGCCCT...TGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGATACTGTCTTGGAGGTaGCTTCTTCCTTTTCCTCTG +
Preference number: 4 (lower is better)
Translates to: SNSVQKAGEDSVVSQTGRILSWR*LLPFPL
Trigger: CAGAGGAAAAGGAAGAAGCCACCTCCAAGACAGTAT...CCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp CAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTTCAGGGGTTTCCACATaGAGTCATCTGCCATGGCCA +
Preference number: 4 (lower is better)
Translates to: QNKCSAPSRFLLVDWRSSSGVST*SHLPWP
Trigger: TGGCCATGGCAGATGACTCCATGTGGAAACCCCTGA...ACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp AGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGCTGCTAGGAAAGGAATaGACTCTGGTAGCAGAACAA +
Preference number: 4 (lower is better)
Translates to: SNSVQKAGEDSVVSQTGRLLGKE*TLVAEQ
Trigger: TTGTTCTGCTACCAGAGTCCATTCCTTTCCTAGCAG...CCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTGTAAAAACATTACCTCCAGCTGCTGGATaGTCTTCTGGCACTGATGCT +
Preference number: 4 (lower is better)
Translates to: AGEDSVVSQTGRDFVKTLPPAAG*SSGTDA
Trigger: AGCATCAGTGCCAGAAGACCATCCAGCAGCTGGAGG...TAATGTTTTTACAAAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp CTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTGAATCCTCCAAAAACTaGTACTTGCCTCCACTCGTA +
Preference number: 4 (lower is better)
Translates to: LCTKGRRGFCGIPDRQGFESSKN*YLPPLV
Trigger: TACGAGTGGAGGCAAGTATCAGTTTTTGGAGGATTC...AAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp CATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTCTCAAAGATACCAATaGGCAGGTGCAGGTAGTGTC +
Preference number: 4 (lower is better)
Translates to: HPVYSLATLYKRQERILWSQRYQ*AGAGSV
Trigger: GACACTACCTGCACCTGCTCATTGGTATCTTTGAGA...CCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTGGGCAGATGCGCGTTTCAGACAACTTCTaGTGTGATTTCTGTTTCTCT +
Preference number: 4 (lower is better)
Translates to: NMRMSVTSSQSTGGGQMRVSDNF*CDFCFS
Trigger: AGAGAAACAGAAATCACATCAGAAGTTGTCTGAAAC...GCGCATCTGCCCACCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTGTATTTCCCCAGAGTaGGATGCAAAACAACAGCCT +
Preference number: 4 (lower is better)
Translates to: NSVQKAGEDSVVSQTGRDCISPE*DAKQQP
Trigger: AGGCTGTTGTTTTGCATCTCACTCTGGGGAAATACA...ATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTCCAGGGTACCTTTTTGAGAAAATaGTTGGAAGCCAGGAGTTGG +
Preference number: 4 (lower is better)
Translates to: SVLLQADFCWLIGAQVQGTFLRK*LEARSW
Trigger: CCAACTCCTGGCTTCCAATCATTTTCTCAAAAAGGT...ACCCTGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR TCA 90 bp GCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTGTAAAAACATTATGTCGTAAGCTTTGCTaGGCAGCGCTCGCCAAAACT +
Preference number: 4 (lower is better)
Translates to: AGEDSVVSQTGRDFVKTLCRKLC*AALAKT
Trigger: AGTTTTGGCGAGCGCTGCTCAGCAAAGCTTACGACA...TAATGTTTTTACAAAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp ACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTATAAATGGGCCCATGTaGTTCTTCCAGTTCTTCTGG +
Preference number: 4 (lower is better)
Translates to: TLYKRQERILWYPRQAGIINGPM*FFQFFW
Trigger: CCAGAAGAACTGGAAGAATCACATGGGCCCATTTAT...AATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTAGCCTGTTTTCCAGCTaGTCCACCAGGGGCATCATC +
Preference number: 4 (lower is better)
Translates to: KYHPVYSLATLYKRQERISLFSS*STRGII
Trigger: GATGATGCCCCTGGTGGATCAGCTGGAAAACAGGCT...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AGCAAAGCCACTCCATTAGCCTGGGTTTCCTCCTGGGAACTGTATGAAATATATAGTGAAGGAACGGCCTaGGAAGGAACCTTGGTCAGT +
Preference number: 4 (lower is better)
Translates to: SKATPLAWVSSWELYEIYSEGTA*EGTLVS
Trigger: ACTGACCAAGGTTCCTTCTCAGGCCGTTCCTTCACT...ATATATTTCATACAGTTCCCAGGAGGAAACCCAGGCTAATGGAGTGGCTTTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR GCA 90 bp AGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGATGTTTTCATCCAGCTaGTTGTTCACTGCTTTGGTC +
Preference number: 4 (lower is better)
Translates to: SNSVQKAGEDSVVSQTGRMFSSS*LFTALV
Trigger: GACCAAAGCAGTGAACAAGCAGCTGGATGAAAACAT...CCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp ACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTATCAGAACCCTGAAATaGATGGCATCAGAAACCTCC +
Preference number: 4 (lower is better)
Translates to: TLYKRQERILWYPRQAGIIRTLK*MASETS
Trigger: GGAGGTTTCTGATGCCATGCATTTCAGGGTTCTGAT...AATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp AACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTCCTCCAGAATGTGTaGTGCTGGAGCTTGTTATTC +
Preference number: 4 (lower is better)
Translates to: NSVQKAGEDSVVSQTGRDFLQNV*CWSLLF
Trigger: GAATAACAAGCTCCAGCAGCACACATTCTGGAGGAA...ATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp ACACCCCCATTAAAACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTGCCTGTTCATCCTCTaGCTCCCTTTTCTTATGTTG +
Preference number: 4 (lower is better)
Translates to: TPPLKHENECDFFPEHRRCLFIL*LPFLML
Trigger: CAACATAAGAAAAGGGAGGCAGAGGATGAACAGGCA...CCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTTTTAATGGGGGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR GCA 90 bp AACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTCCACATCATCAGGGCTTCTaGTCTCTCCCTACTCATGAA +
Preference number: 4 (lower is better)
Translates to: NKCSAPSRFLLVDWRSSPHHQGF*SLPTHE
Trigger: TTCATGAGTAGGGAGAGAGCAGAAGCCCTGATGATG...TGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp AAGAAACTGCTCATTAAGCAAAGCCACTCCATTAGCCTGGGTTTCCTCCTGGGAAATACCCGTGTCTCATaGTACGGCAGAACACAAGCA +
Preference number: 4 (lower is better)
Translates to: KKLLIKQSHSISLGFLLGNTRVS*YGRTQA
Trigger: TGCTTGTGTTCTGCCGTACCATGAGACACGGGTATT...TCCCAGGAGGAAACCCAGGCTAATGGAGTGGCTTTGCTTAATGAGCAGTTTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp TCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTAGGGAAGCAGGTTTCTTaGAAGGATGAGCAGCAAGAG +
Preference number: 4 (lower is better)
Translates to: SGLLLSNSVQKAGEDSVVGKQVS*KDEQQE
Trigger: CTCTTGCTGCTCATCCTTCCAAGAAACCTGCTTCCC...TACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp TCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTAAGTGATCCGAACAGTTaGCATTCCTGGGTGAAGCTC +
Preference number: 4 (lower is better)
Translates to: SGLLLSNSVQKAGEDSVVSDPNS*HSWVKL
Trigger: GAGCTTCACCCAGGAATGCCAACTGTTCGGATCACT...TACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp ACACCCCCATTAAAACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTATTCTGCCACCATCTaGGGAGAGTTTTTGGCAGAT +
Preference number: 4 (lower is better)
Translates to: TPPLKHENECDFFPEHRRYSATI*GEFLAD
Trigger: ATCTGCCAAAAACTCTCCCCAGATGGTGGCAGAATA...CCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTTTTAATGGGGGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp ACACCCCCATTAAAACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGATACTGTCTTGGAGGTaGCTTCTTCCTTTTCCTCTG +
Preference number: 4 (lower is better)
Translates to: TPPLKHENECDFFPEHRRILSWR*LLPFPL
Trigger: CAGAGGAAAAGGAAGAAGCCACCTCCAAGACAGTAT...CCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTTTTAATGGGGGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp AACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTGGGCAGATGCGCGTCCACCTTAAAAACTaGCAACATTTCATCTTGTAC +
Preference number: 4 (lower is better)
Translates to: NMRMSVTSSQSTGGGQMRVHLKN*QHFILY
Trigger: GTACAAGATGAAATGTTGCCAGTTTTTAAGGTGGAC...GCGCATCTGCCCACCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp GCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGCAGAATGTGTGCTGCTaGAGCTTGTTATTCAAAAGA +
Preference number: 4 (lower is better)
Translates to: ATLYKRQERILWYPRQAGQNVCC*SLLFKR
Trigger: TCTTTTGAATAACAAGCTCCAGCAGCACACATTCTG...CCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp ACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTAGTTTGAGAAAGCGGTaGACCATTTTCTTCCTCCAG +
Preference number: 4 (lower is better)
Translates to: TLYKRQERILWYPRQAGISLRKR*TIFFLQ
Trigger: CTGGAGGAAGAAAATGGTCCACCGCTTTCTCAAACT...AATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AGCTCTCACCGCTTTAAACTTTATAAAATGTATGATGCTGAACACAGCAGAAAAATCAGGCTGGGCAGCTaGGGGATGGCCAGCGCTTCC +
Preference number: 4 (lower is better)
Translates to: SSHRFKLYKMYDAEHSRKIRLGS*GMASAS
Trigger: GGAAGCGCTGGCCATCCCCCAGCTGCCCAGCCTGAT...TTTTCTGCTGTGTTCAGCATCATACATTTTATAAAGTTTAAAGCGGTGAGAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTAGGCAGACCTCACTGTaGACCAACTCACTGGTGCTC +
Preference number: 4 (lower is better)
Translates to: KYHPVYSLATLYKRQERIRQTSL*TNSLVL
Trigger: GAGCACCAGTGAGTTGGTCCACAGTGAGGTCTGCCT...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGAAAGGTCTGCTCTTTaGAAGAGATTCAGAAGACTT +
Preference number: 4 (lower is better)
Translates to: SNSVQKAGEDSVVSQTGRERSAL*KRFRRL
Trigger: AAGTCTTCTGAATCTCTTTCAAAGAGCAGACCTTTC...CCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp GCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTGTAAAAACATTAGGTTTCTTGGAAGGATaGGCAGCAAGAGATCAGCAC +
Preference number: 4 (lower is better)
Translates to: AGEDSVVSQTGRDFVKTLGFLEG*AARDQH
Trigger: GTGCTGATCTCTTGCTGCTCATCCTTCCAAGAAACC...TAATGTTTTTACAAAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp GTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCTATGGCTTCCCAGATTaGGGAGTAGAGACATCACCA +
Preference number: 4 (lower is better)
Translates to: VYSLATLYKRQERILWYPYGFPD*GVETSP
Trigger: TGGTGATGTCTCTACTCCTCAATCTGGGAAGCCATA...GGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATACCTTTTTGAGAAAATaGTTGGAAGCCAGGAGTTGG +
Preference number: 4 (lower is better)
Translates to: NSVQKAGEDSVVSQTGRDTFLRK*LEARSW
Trigger: CCAACTCCTGGCTTCCAATCATTTTCTCAAAAAGGT...ATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp GTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCTTGGTTACCCGTTCCTaGAACCTTTCTTCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: VYSLATLYKRQERILWYPLVTRS*NLSSPP
Trigger: TGGAGGAGAAGAAAGGTTTCAGGAACGGGTAACCAA...GGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp AAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACACGCGCTCCAAGCCTTTTaGCAGCTGGCTGAACAATGG +
Preference number: 4 (lower is better)
Translates to: KTLSIGRCESTESNMAPHALQAF*QLAEQW
Trigger: CCATTGTTCAGCCAGCTGGCAAAAGGCTTGGAGCGC...GTGTGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp AAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACACCAGCTGCTTGTTCACTaGTTTGGTCTGGACGCTGCG +
Preference number: 4 (lower is better)
Translates to: KTLSIGRCESTESNMAPHQLLVH*FGLDAA
Trigger: CGCAGCGTCCAGACCAAAGCAGTGAACAAGCAGCTG...GTGTGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp AACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTCAGCTTCTTCTCCTaGAATGTGCTGAACAACAGA +
Preference number: 4 (lower is better)
Translates to: NSVQKAGEDSVVSQTGRDFSFFS*NVLNNR
Trigger: TCTGTTGTTCAGCACATTGCAGGAGAAGAAGCTGAA...ATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp AGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGATGAGTGGAAGAAACTaGTCATTAAGCAAAGCCACT +
Preference number: 4 (lower is better)
Translates to: SNSVQKAGEDSVVSQTGRMSGRN*SLSKAT
Trigger: AGTGGCTTTGCTTAATGAGCAGTTTCTTCCACTCAT...CCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp TCAAAAAGATGGCTAGCCAGTAGGTGGTCTAAGTTGTTCGTCAGTGGTATTTTTGTCTCGATAGGAGGCTaGGATCAGTTTGAGGGAGGG +
Preference number: 4 (lower is better)
Translates to: SKRWLASRWSKLFVSGIFVSIGG*DQFEGG
Trigger: CCCTCCCTCAAACTGATCCCAGCCTCCTATCGAGAC...AAAAATACCACTGACGAACAACTTAGACCACCTACTGGCTAGCCATCTTTTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp AGCAAAGCCACTCCATTAGCCTGGGTTTCCTCCTGGGAACTGTATGAAATATATGAGCAGACACAATGGTaGAGGCATAGAAGGCCAAGA +
Preference number: 4 (lower is better)
Translates to: SKATPLAWVSSWELYEIYEQTQW*RHRRPR
Trigger: TCTTGGCCTTCTATGCCTCCACCATTGTGTCTGCTC...ATATATTTCATACAGTTCCCAGGAGGAAACCCAGGCTAATGGAGTGGCTTTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp AACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATCAGCATCCAACGCTCTaGGGTATTTGCTTTCTAAAA +
Preference number: 4 (lower is better)
Translates to: NSVQKAGEDSVVSQTGRDQHPTL*GICFLK
Trigger: TTTTAGAAAGCAAATACCCCAGAGCGTTGGATGCTG...ATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTTGCAATGTAAGATaGGCAGCCATACACACAGTG +
Preference number: 4 (lower is better)
Translates to: NSVQKAGEDSVVSQTGRDFCNVR*AAIHTV
Trigger: CACTGTGTGTATGGCTGCCCATCTTACATTGCAAAA...ATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGAGACTGAATAAGTGCTaGAATGACCATTTTCACTGT +
Preference number: 4 (lower is better)
Translates to: ATLYKRQERILWYPRQAGRLNKC*NDHFHC
Trigger: ACAGTGAAAATGGTCATTCCAGCACTTATTCAGTCT...CCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACAGGCGCCTGTGTTCTaGCACATGTGGAAGTGCGTC +
Preference number: 4 (lower is better)
Translates to: VKTLSIGRCESTESNMAPQAPVF*HMWKCV
Trigger: GACGCACTTCCACATGTGCCAGAACACAGGCGCCTG...TGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTCCAAGTTTGAGAAAGCGGTaGACCATTTTCTTCCTCCAG +
Preference number: 4 (lower is better)
Translates to: NKCSAPSRFLLVDWRSSPSLRKR*TIFFLQ
Trigger: CTGGAGGAAGAAAATGGTCCACCGCTTTCTCAAACT...TGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp ACACCCCCATTAAAACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGAAAGGTTTCACCAAGTaGCCAGCAAACAGAGTGAAA +
Preference number: 4 (lower is better)
Translates to: TPPLKHENECDFFPEHRRKGFTK*PANRVK
Trigger: TTTCACTCTGTTTGCTGGCCACTTGGTGAAACCTTT...CCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTTTTAATGGGGGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTTGGAGTCATCTGCCATaGCCACAGAGAACTGTGCGA +
Preference number: 4 (lower is better)
Translates to: KYHPVYSLATLYKRQERIWSHLP*PQRTVR
Trigger: TCGCACAGTTCTCTGTGGCCATGGCAGATGACTCCA...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTTGGATGTGGAACCTGTaGATCAGCCATTCCAGACAC +
Preference number: 4 (lower is better)
Translates to: KYHPVYSLATLYKRQERIWMWNL*ISHSRH
Trigger: GTGTCTGGAATGGCTGATTCACAGGTTCCACATCCA...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp ATAAAAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGACCTGGACAGCAAGTTaGAGAGGGGTGGGATCAGTA +
Preference number: 4 (lower is better)
Translates to: IKIPSGLLLSNSVQKAGETWTAS*RGVGSV
Trigger: TACTGATCCCACCCCTCTTCAACTTGCTGTCCAGGT...CTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTCCAGGGTTTCCTACAACCTTTTTaGGAAAATGATTGGAAGCCA +
Preference number: 4 (lower is better)
Translates to: SVLLQADFCWLIGAQVQGFLQPF*ENDWKP
Trigger: TGGCTTCCAATCATTTTCTCAAAAAGGTTGTAGGAA...ACCCTGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR TCA 90 bp CTGAATTATGACAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTAGCCTGTTTTCCAGCTaGTCCACCAGGGGCATCATC +
Preference number: 4 (lower is better)
Translates to: LNYDKTSVLLQADFCWLISLFSS*STRGII
Trigger: GATGATGCCCCTGGTGGATCAGCTGGAAAACAGGCT...AATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTTGTCATAATTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR GCA 90 bp GTTTCCTCCTGGGAACTGTATGAAATATATTCTTCAAAAAGATGGCTAGCCAGTGCGCTCCAAGCCTTTTaGCAGCTGGCTGAACAATGG +
Preference number: 4 (lower is better)
Translates to: VSSWELYEIYSSKRWLASALQAF*QLAEQW
Trigger: CCATTGTTCAGCCAGCTGGCAAAAGGCTTGGAGCGC...ACTGGCTAGCCATCTTTTTGAAGAATATATTTCATACAGTTCCCAGGAGGAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR GCA 90 bp ATATATTCTTCAAAAAGATGGCTAGCCAGTAGGTGGTCTAAGTTGTTCGTCAGTCAGCTGCTTGTTCACTaGTTTGGTCTGGACGCTGCG +
Preference number: 4 (lower is better)
Translates to: IYSSKRWLASRWSKLFVSQLLVH*FGLDAA
Trigger: CGCAGCGTCCAGACCAAAGCAGTGAACAAGCAGCTG...ACTGACGAACAACTTAGACCACCTACTGGCTAGCCATCTTTTTGAAGAATATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR GCA 90 bp GCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTGTAAAAACATTATGGTGGAACAGCTCCTaGTTTTTAAGGCCTGTGATC +
Preference number: 4 (lower is better)
Translates to: AGEDSVVSQTGRDFVKTLWWNSS*FLRPVI
Trigger: GATCACAGGCCTTAAAAAGCAGGAGCTGTTCCACCA...TAATGTTTTTACAAAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTAACATCAGTTCCAGGTaGCACTCTGAGGGGATTTCC +
Preference number: 4 (lower is better)
Translates to: KYHPVYSLATLYKRQERINISSR*HSEGIS
Trigger: GGAAATCCCCTCAGAGTGGCACCTGGAACTGATGTT...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp GCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGAAGAACTTGAACAACTaGAGAACATCTTGTAGATGT +
Preference number: 4 (lower is better)
Translates to: ATLYKRQERILWYPRQAGKNLNN*RTSCRC
Trigger: ACATCTACAAGATGTTCTGCAGTTGTTCAAGTTCTT...CCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp CTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTGGAGATGCAGTAGATaGCAGCTTTTGTTTATACTG +
Preference number: 4 (lower is better)
Translates to: LCTKGRRGFCGIPDRQGFWRCSR*QLLFIL
Trigger: CAGTATAAACAAAAGCTGGCATCTACTGCATCTCCA...AAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp GCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTGTAAAAACATTATACTCCATGTTCCCCTaGTCTGATGACAAAGGCTCT +
Preference number: 4 (lower is better)
Translates to: AGEDSVVSQTGRDFVKTLYSMFP*SDDKGS
Trigger: AGAGCCTTTGTCATCAGAGCAGGGGAACATGGAGTA...TAATGTTTTTACAAAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp AACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATCTTTTCCATGGACTGTaGTACCGTGTTAATATAGCT +
Preference number: 4 (lower is better)
Translates to: NSVQKAGEDSVVSQTGRDLFHGL*YRVNIA
Trigger: AGCTATATTAACACGGTAGCACAGTCCATGGAAAAG...ATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AAAGCCACTCCATTAGCCTGGGTTTCCTCCTGGGAACTGTATGAAATATATTCTAAGCCTTTTGCCAGCTaGCTGAACAATGGCGCTTCA +
Preference number: 4 (lower is better)
Translates to: KATPLAWVSSWELYEIYSKPFAS*LNNGAS
Trigger: TGAAGCGCCATTGTTCAGCCAGCTGGCAAAAGGCTT...AGAATATATTTCATACAGTTCCCAGGAGGAAACCCAGGCTAATGGAGTGGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp TGGGAACTGTATGAAATATATTCTTCAAAAAGATGGCTAGCCAGTAGGTGGTCTTTCACTGCTTTGGTCTaGACGCTGCGCTCCAAGCCT +
Preference number: 4 (lower is better)
Translates to: WELYEIYSSKRWLASRWSFTALV*TLRSKP
Trigger: AGGCTTGGAGCGCAGCGTCCAGACCAAAGCAGTGAA...AGACCACCTACTGGCTAGCCATCTTTTTGAAGAATATATTTCATACAGTTCCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp ACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTAGGCTTCGTCTGTTTTaGAGATGTTTACTTGGTTCA +
Preference number: 4 (lower is better)
Translates to: TLYKRQERILWYPRQAGIRLRLF*RCLLGS
Trigger: TGAACCAAGTAAACATCTCCAAAACAGACGAAGCCT...AATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp ACACCCCCATTAAAACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGAGGCTTCGTCTGTTTTaGAGATGTTTACTTGGTTCA +
Preference number: 4 (lower is better)
Translates to: TPPLKHENECDFFPEHRRRLRLF*RCLLGS
Trigger: TGAACCAAGTAAACATCTCCAAAACAGACGAAGCCT...CCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTTTTAATGGGGGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR TCA 90 bp AAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACACCTTTTGCCAGCTGGCTaGACAATGGCGCTTCAAACT +
Preference number: 4 (lower is better)
Translates to: KTLSIGRCESTESNMAPHLLPAG*TMALQT
Trigger: AGTTTGAAGCGCCATTGTTCAGCCAGCTGGCAAAAG...GTGTGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp TCAAAAAGATGGCTAGCCAGTAGGTGGTCTAAGTTGTTCGTCAGTGGTATTTTTTGGATGTGGAACCTGTaGATCAGCCATTCCAGACAC +
Preference number: 4 (lower is better)
Translates to: SKRWLASRWSKLFVSGIFWMWNL*ISHSRH
Trigger: GTGTCTGGAATGGCTGATTCACAGGTTCCACATCCA...AAAAATACCACTGACGAACAACTTAGACCACCTACTGGCTAGCCATCTTTTTGA
44% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR TCA 90 bp GTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCAGTTGGCATTCCTGGGTaGAGCTCCTTTGTTGTGTGC +
Preference number: 4 (lower is better)
Translates to: VKTLSIGRCESTESNMAPVGIPG*SSFVVC
Trigger: GCACACAACAAAGGAGCTTCACCCAGGAATGCCAAC...TGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTGGCCAGCAAACAGAGTaGAAAGGCCTTTCAACTTCT +
Preference number: 4 (lower is better)
Translates to: KYHPVYSLATLYKRQERIGQQTE*KGLSTS
Trigger: AGAAGTTGAAAGGCCTTTTCACTCTGTTTGCTGGCC...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AGCAAAGCCACTCCATTAGCCTGGGTTTCCTCCTGGGAACTGTATGAAATATATCAGCTGGCTGAACAATaGCGCTTCAAACTGTTCAAA +
Preference number: 4 (lower is better)
Translates to: SKATPLAWVSSWELYEIYQLAEQ*RFKLFK
Trigger: TTTGAACAGTTTGAAGCGCCATTGTTCAGCCAGCTG...ATATATTTCATACAGTTCCCAGGAGGAAACCCAGGCTAATGGAGTGGCTTTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp AAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACACGAGCAGACACAATGGTaGAGGCATAGAAGGCCAAGA +
Preference number: 4 (lower is better)
Translates to: KTLSIGRCESTESNMAPHEQTQW*RHRRPR
Trigger: TCTTGGCCTTCTATGCCTCCACCATTGTGTCTGCTC...GTGTGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp TCAAAAAGATGGCTAGCCAGTAGGTGGTCTAAGTTGTTCGTCAGTGGTATTTTTCTAGAGCAGACACAATaGTGGAGGCATAGAAGGCCA +
Preference number: 4 (lower is better)
Translates to: SKRWLASRWSKLFVSGIFLEQTQ*WRHRRP
Trigger: TGGCCTTCTATGCCTCCACCATTGTGTCTGCTCTAG...AAAAATACCACTGACGAACAACTTAGACCACCTACTGGCTAGCCATCTTTTTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp AACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTGTATGGAAAGAGTTTaGCGACTACATTGTCTGATA +
Preference number: 4 (lower is better)
Translates to: NSVQKAGEDSVVSQTGRDCMERV*RLHCLI
Trigger: TATCAGACAATGTAGTCGCCAAACTCTTTCCATACA...ATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GCCAAAACCCTGAATTATGACAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCAATGGCCAGAAGGACTaGAACCAGTTTGAGAAAGCG +
Preference number: 4 (lower is better)
Translates to: AKTLNYDKTSVLLQADFCNGQKD*NQFEKA
Trigger: CGCTTTCTCAAACTGGTTCCAGTCCTTCTGGCCATT...GCAGAAATCTGCTTGGAGCAGAACACTTGTTTTGTCATAATTCAGGGTTTTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp AAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACACGGGGCTGATGAAGTGTaGCAGAGTCTCAACGACTTT +
Preference number: 4 (lower is better)
Translates to: KTLSIGRCESTESNMAPHGADEV*QSLNDF
Trigger: AAAGTCGTTGAGACTCTGCCACACTTCATCAGCCCC...GTGTGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp ACACCCCCATTAAAACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTTCTTCCAGTTCTTCTaGATCTGTTTGAAAGTCTTG +
Preference number: 4 (lower is better)
Translates to: TPPLKHENECDFFPEHRRFFQFF*ICLKVL
Trigger: CAAGACTTTCAAACAGATCCAGAAGAACTGGAAGAA...CCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTTTTAATGGGGGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp TATGATGCTGAACACAGCAGAAAAACTGAGGCCAAAACCCTGAATTATGACAAATGGAGTCATCTGCCATaGCCACAGAGAACTGTGCGA +
Preference number: 4 (lower is better)
Translates to: YDAEHSRKTEAKTLNYDKWSHLP*PQRTVR
Trigger: TCGCACAGTTCTCTGTGGCCATGGCAGATGACTCCA...TTTGTCATAATTCAGGGTTTTGGCCTCAGTTTTTCTGCTGTGTTCAGCATCATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp GTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCATCAGGGGTTTCCACATaGAGTCATCTGCCATGGCCA +
Preference number: 4 (lower is better)
Translates to: VKTLSIGRCESTESNMAPSGVST*SHLPWP
Trigger: TGGCCATGGCAGATGACTCCATGTGGAAACCCCTGA...TGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp ATATATTCTTCAAAAAGATGGCTAGCCAGTAGGTGGTCTAAGTTGTTCGTCAGTCTTTTGCCAGCTGGCTaGACAATGGCGCTTCAAACT +
Preference number: 4 (lower is better)
Translates to: IYSSKRWLASRWSKLFVSLLPAG*TMALQT
Trigger: AGTTTGAAGCGCCATTGTTCAGCCAGCTGGCAAAAG...ACTGACGAACAACTTAGACCACCTACTGGCTAGCCATCTTTTTGAAGAATATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR TCA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTTCTCCAGTATCAGACTaGATAAGTGCTGGAATGACC +
Preference number: 4 (lower is better)
Translates to: KYHPVYSLATLYKRQERISPVSD*ISAGMT
Trigger: GGTCATTCCAGCACTTATTCAGTCTGATACTGGAGA...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp ATGTATGATGCTGAACACAGCAGAAAAACTGAGGCCAAAACCCTGAATTATGACGTGATTTTCTCTAGGTaGATCACCTGGGTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: MYDAEHSRKTEAKTLNYDVIFSR*ITWVRR
Trigger: CCTTCTGACCCAGGTGATTCACCTAGAGAAAATCAC...GTCATAATTCAGGGTTTTGGCCTCAGTTTTTCTGCTGTGTTCAGCATCATACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR GCA 90 bp ATATATTCTTCAAAAAGATGGCTAGCCAGTAGGTGGTCTAAGTTGTTCGTCAGTCATTCCAGACACTTCTaGGCTGGCTTGAGGAGGAAA +
Preference number: 4 (lower is better)
Translates to: IYSSKRWLASRWSKLFVSHSRHF*AGLRRK
Trigger: TTTCCTCCTCAAGCCAGCGCAGAAGTGTCTGGAATG...ACTGACGAACAACTTAGACCACCTACTGGCTAGCCATCTTTTTGAAGAATATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR GCA 90 bp ACAGGCAGGGATTTTGTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGCTTCTTCTTGTGCTaGAGCAACTCCAGGATGAGG +
Preference number: 4 (lower is better)
Translates to: TGRDFVKTLSIGRCESTESFFLC*SNSRMR
Trigger: CCTCATCCTGGAGTTGCTGCAGCACAAGAAGAAGCT...TTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTACAAAATCCCTGCCTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp CATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGCAACTCAGAATTAACTaGTTAGTGTACTCCATGTTC +
Preference number: 4 (lower is better)
Translates to: HPVYSLATLYKRQERILWQLRIN*LVYSMF
Trigger: GAACATGGAGTACACTAAGCAGTTAATTCTGAGTTG...CCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp AGCTCTCACCGCTTTAAACTTTATAAAATGTATGATGCTGAACACAGCAGAAAACCCTGTTCAAGTCCGTaGAGGCTCTTAGGACCACCA +
Preference number: 4 (lower is better)
Translates to: SSHRFKLYKMYDAEHSRKPCSSP*RLLGPP
Trigger: TGGTGGTCCTAAGAGCCTGCACGGACTTGAACAGGG...TTTTCTGCTGTGTTCAGCATCATACATTTTATAAAGTTTAAAGCGGTGAGAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR GCA 90 bp GCCAAAACCCTGAATTATGACAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTTCCTCCAGAATGTGTaGTGCTGGAGCTTGTTATTC +
Preference number: 4 (lower is better)
Translates to: AKTLNYDKTSVLLQADFCFLQNV*CWSLLF
Trigger: GAATAACAAGCTCCAGCAGCACACATTCTGGAGGAA...GCAGAAATCTGCTTGGAGCAGAACACTTGTTTTGTCATAATTCAGGGTTTTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR GCA 90 bp TCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTACAGTTCAAGATAAACTaGAGCAACAAGCAGCACTTT +
Preference number: 4 (lower is better)
Translates to: SGLLLSNSVQKAGEDSVVQFKIN*SNKQHF
Trigger: AAAGTGCTGCTTGTTGCTGCAGTTTATCTTGAACTG...TACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GTTTCCTCCTGGGAACTGTATGAAATATATTCTTCAAAAAGATGGCTAGCCAGTCAGACACTTCTGCGCTaGCTTGAGGAGGAAATAAGG +
Preference number: 4 (lower is better)
Translates to: VSSWELYEIYSSKRWLASQTLLR*LEEEIR
Trigger: CCTTATTTCCTCCTCAAGCCAGCGCAGAAGTGTCTG...ACTGGCTAGCCATCTTTTTGAAGAATATATTTCATACAGTTCCCAGGAGGAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTAACAGTTGGCATTCCTaGGTGAAGCTCCTTTGTTGT +
Preference number: 4 (lower is better)
Translates to: KYHPVYSLATLYKRQERINSWHS*VKLLCC
Trigger: ACAACAAAGGAGCTTCACCCAGGAATGCCAACTGTT...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp CTGAATTATGACAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGGGCTGATGAAGTGTaGCAGAGTCTCAACGACTTT +
Preference number: 4 (lower is better)
Translates to: LNYDKTSVLLQADFCWLIGADEV*QSLNDF
Trigger: AAAGTCGTTGAGACTCTGCCACACTTCATCAGCCCC...AATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTTGTCATAATTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp CATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTTCTTCCAGTTCTTCTaGATCTGTTTGAAAGTCTTG +
Preference number: 4 (lower is better)
Translates to: HPVYSLATLYKRQERILWFFQFF*ICLKVL
Trigger: CAAGACTTTCAAACAGATCCAGAAGAACTGGAAGAA...CCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp GTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACCACCCCTCGTTCTTTaGAAGGTCTGCTCTTTGAAA +
Preference number: 4 (lower is better)
Translates to: VKTLSIGRCESTESNMAPPPLVL*KVCSLK
Trigger: TTTCAAAGAGCAGACCTTTCAAAGAACGAGGGGTGG...TGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTGCAGTTAAGTGGATTTaGAAGGCTAGAACCATAGGT +
Preference number: 4 (lower is better)
Translates to: KYHPVYSLATLYKRQERIAVKWI*KARTIG
Trigger: ACCTATGGTTCTAGCCTTTCAAATCCACTTAACTGC...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp CTGAATTATGACAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTCCACTAGACAGTCAATaGTCCAACCTTCCGTTTTCC +
Preference number: 4 (lower is better)
Translates to: LNYDKTSVLLQADFCWLIPLDSQ*SNLPFS
Trigger: GGAAAACGGAAGGTTGGATCATTGACTGTCTAGTGG...AATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTTGTCATAATTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR GCA 90 bp GTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGCAATGAGACTATCTaGATTGTAAAGATGGATGTG +
Preference number: 4 (lower is better)
Translates to: VYSLATLYKRQERILWYPSNETI*IVKMDV
Trigger: CACATCCATCTTTACAATGCAGATAGTCTCATTGCT...GGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp GTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCATCAGACTGAATAAGTaGTGGAATGACCATTTTCAC +
Preference number: 4 (lower is better)
Translates to: VYSLATLYKRQERILWYPIRLNK*WNDHFH
Trigger: GTGAAAATGGTCATTCCAGCACTTATTCAGTCTGAT...GGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp ATAAAAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGTGTCTGTCTGTTAATTaGCTGTTCATCCTCTGCCTC +
Preference number: 4 (lower is better)
Translates to: IKIPSGLLLSNSVQKAGECLSVN*LFILCL
Trigger: GAGGCAGAGGATGAACAGGCAATTAACAGACAGACA...CTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTTTTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp GTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACATCATCAGGGCTTCTaGTCTCTCCCTACTCATGAA +
Preference number: 4 (lower is better)
Translates to: VKTLSIGRCESTESNMAPHHQGF*SLPTHE
Trigger: TTCATGAGTAGGGAGAGAGCAGAAGCCCTGATGATG...TGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp ACAGGCAGGGATTTTGTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAATACCCGTGTCTCATaGTACGGCAGAACACAAGCA +
Preference number: 4 (lower is better)
Translates to: TGRDFVKTLSIGRCESTENTRVS*YGRTQA
Trigger: TGCTTGTGTTCTGCCGTACCATGAGACACGGGTATT...TTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTACAAAATCCCTGCCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACACAGTGTTTTGATGAGCTaGGATGCCAGTGACTTCACA +
Preference number: 4 (lower is better)
Translates to: KTLSIGRCESTESNMAPHSVLMS*DASDFT
Trigger: TGTGAAGTCACTGGCATCCCAGCTCATCAAAACACT...GTGTGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GCCTGGGTTTCCTCCTGGGAACTGTATGAAATATATTCTTCAAAAAGATGGCTAAGTGTTTTGATGAGCTaGGATGCCAGTGACTTCACA +
Preference number: 4 (lower is better)
Translates to: AWVSSWELYEIYSSKRWLSVLMS*DASDFT
Trigger: TGTGAAGTCACTGGCATCCCAGCTCATCAAAACACT...TAGCCATCTTTTTGAAGAATATATTTCATACAGTTCCCAGGAGGAAACCCAGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp GTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCATCTCACAGGAGCCAGTaGGTGATTCAAACTGAGCAT +
Preference number: 4 (lower is better)
Translates to: VKTLSIGRCESTESNMAPSHRSQ*VIQTEH
Trigger: ATGCTCAGTTTGAATCACCCACTGGCTCCTGTGAGA...TGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCGTCCACCTTAAAAACTaGCAACATTTCATCTTGTAC +
Preference number: 4 (lower is better)
Translates to: VYSLATLYKRQERILWYPVHLKN*QHFILY
Trigger: GTACAAGATGAAATGTTGCCAGTTTTTAAGGTGGAC...GGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCAAATGGCCAGAAGGACTaGAACCAGTTTGAGAAAGCG +
Preference number: 4 (lower is better)
Translates to: VKTLSIGRCESTESNMAPNGQKD*NQFEKA
Trigger: CGCTTTCTCAAACTGGTTCCAGTCCTTCTGGCCATT...TGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp GCCAAAACCCTGAATTATGACAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCAAAGGTTTCACCAAGTaGCCAGCAAACAGAGTGAAA +
Preference number: 4 (lower is better)
Translates to: AKTLNYDKTSVLLQADFCKGFTK*PANRVK
Trigger: TTTCACTCTGTTTGCTGGCCACTTGGTGAAACCTTT...GCAGAAATCTGCTTGGAGCAGAACACTTGTTTTGTCATAATTCAGGGTTTTGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR TCA 90 bp ACAGGCAGGGATTTTGTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAGTGAAGGAGGAACGATaGAATGTTTTCATCCAGCTG +
Preference number: 4 (lower is better)
Translates to: TGRDFVKTLSIGRCESTEVKEER*NVFIQL
Trigger: CAGCTGGATGAAAACATTTCATCGTTCCTCCTTCAC...TTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTACAAAATCCCTGCCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTGAATTCACAACAGACTaGAATCCAGAACTCAGTATC +
Preference number: 4 (lower is better)
Translates to: KYHPVYSLATLYKRQERIEFTTD*NPELSI
Trigger: GATACTGAGTTCTGGATTTCAGTCTGTTGTGAATTC...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp GCCAAAACCCTGAATTATGACAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCGAATTCACAACAGACTaGAATCCAGAACTCAGTATC +
Preference number: 4 (lower is better)
Translates to: AKTLNYDKTSVLLQADFCEFTTD*NPELSI
Trigger: GATACTGAGTTCTGGATTTCAGTCTGTTGTGAATTC...GCAGAAATCTGCTTGGAGCAGAACACTTGTTTTGTCATAATTCAGGGTTTTGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR TCA 90 bp GCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTGTAAAAACATTATTCCTACAACCTTTTTaGGAAAATGATTGGAAGCCA +
Preference number: 4 (lower is better)
Translates to: AGEDSVVSQTGRDFVKTLFLQPF*ENDWKP
Trigger: TGGCTTCCAATCATTTTCTCAAAAAGGTTGTAGGAA...TAATGTTTTTACAAAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp GTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCATTCCCCAGAGTGAGATaGAAAACAACAGCCTCATCT +
Preference number: 4 (lower is better)
Translates to: VKTLSIGRCESTESNMAPFPRVR*KTTASS
Trigger: AGATGAGGCTGTTGTTTTGCATCTCACTCTGGGGAA...TGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTAGCTCCTTTGTTGTGTaGATAGCTTTTATGAACAGG +
Preference number: 4 (lower is better)
Translates to: KYHPVYSLATLYKRQERISSFVV*IAFMNR
Trigger: CCTGTTCATAAAAGCTATGCACACAACAAAGGAGCT...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTTCAACTTCTCAGCAATaGAGTCAGCCAGATTGTAAA +
Preference number: 4 (lower is better)
Translates to: KYHPVYSLATLYKRQERISTSQQ*SQPDCK
Trigger: TTTACAATCTGGCTGACTGCATTGCTGAGAAGTTGA...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp ATGAGTGGAAGAAACTGCTCATTAAGCAAAGCCACTCCATTAGCCTGGGTTTCCGATTTCAATCCCTTTTaGATGTATGGAAAGAGTTTG +
Preference number: 4 (lower is better)
Translates to: MSGRNCSLSKATPLAWVSDFNPF*MYGKSL
Trigger: CAAACTCTTTCCATACATCCAAAAGGGATTGAAATC...GGAAACCCAGGCTAATGGAGTGGCTTTGCTTAATGAGCAGTTTCTTCCACTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp AAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACACCTCCTCCTTTTTCTCTaGTTCTATCAGCTTTACTGC +
Preference number: 4 (lower is better)
Translates to: KTLSIGRCESTESNMAPHLLLFL*FYQLYC
Trigger: GCAGTAAAGCTGATAGAACCAGAGAAAAAGGAGGAG...GTGTGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp AAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACACGCAGAACACAAGCAATaGGACTATCTGCATTGTAAA +
Preference number: 4 (lower is better)
Translates to: KTLSIGRCESTESNMAPHAEHKQ*DYLHCK
Trigger: TTTACAATGCAGATAGTCTCATTGCTTGTGTTCTGC...GTGTGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR TCA 90 bp ACAGGCAGGGATTTTGTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAACCACAAAGACACCGATaGTTTTCACCACAATCTGTT +
Preference number: 4 (lower is better)
Translates to: TGRDFVKTLSIGRCESTEPQRHR*FSPQSV
Trigger: AACAGATTGTGGTGAAAATCATCGGTGTCTTTGTGG...TTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTACAAAATCCCTGCCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp ATGTATGATGCTGAACACAGCAGAAAAACTGAGGCCAAAACCCTGAATTATGACCTTTTCCATGGACTGTaGTACCGTGTTAATATAGCT +
Preference number: 4 (lower is better)
Translates to: MYDAEHSRKTEAKTLNYDLFHGL*YRVNIA
Trigger: AGCTATATTAACACGGTAGCACAGTCCATGGAAAAG...GTCATAATTCAGGGTTTTGGCCTCAGTTTTTCTGCTGTGTTCAGCATCATACAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR GCA 90 bp AAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACACTTCATCACCCCAATGTaGTCTTGTAAGATGCTCATA +
Preference number: 4 (lower is better)
Translates to: KTLSIGRCESTESNMAPHFITPM*SCKMLI
Trigger: TATGAGCATCTTACAAGAGCACATTGGGGTGATGAA...GTGTGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp TATTCTTCAAAAAGATGGCTAGCCAGTAGGTGGTCTAAGTTGTTCGTCAGTGGTTGTATGGAAAGAGTTTaGCGACTACATTGTCTGATA +
Preference number: 4 (lower is better)
Translates to: YSSKRWLASRWSKLFVSGCMERV*RLHCLI
Trigger: TATCAGACAATGTAGTCGCCAAACTCTTTCCATACA...ACCACTGACGAACAACTTAGACCACCTACTGGCTAGCCATCTTTTTGAAGAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CCA 90 bp GCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTGTAAAAACATTAGATTTCAATCCCTTTTaGATGTATGGAAAGAGTTTG +
Preference number: 4 (lower is better)
Translates to: AGEDSVVSQTGRDFVKTLDFNPF*MYGKSL
Trigger: CAAACTCTTTCCATACATCCAAAAGGGATTGAAATC...TAATGTTTTTACAAAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AGCTCTCACCGCTTTAAACTTTATAAAATGTATGATGCTGAACACAGCAGAAAATGCAGTGCTGAGAACTaGTATGAAAGGCTCTCGGTT +
Preference number: 4 (lower is better)
Translates to: SSHRFKLYKMYDAEHSRKCSAEN*YERLSV
Trigger: AACCGAGAGCCTTTCATACCAGTTCTCAGCACTGCA...TTTTCTGCTGTGTTCAGCATCATACATTTTATAAAGTTTAAAGCGGTGAGAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp CTGAATTATGACAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTCTCCTCCTTTTTCTCTaGTTCTATCAGCTTTACTGC +
Preference number: 4 (lower is better)
Translates to: LNYDKTSVLLQADFCWLILLLFL*FYQLYC
Trigger: GCAGTAAAGCTGATAGAACCAGAGAAAAAGGAGGAG...AATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTTGTCATAATTCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR TCA 90 bp ATATATTCTTCAAAAAGATGGCTAGCCAGTAGGTGGTCTAAGTTGTTCGTCAGTGCAGAACACAAGCAATaGGACTATCTGCATTGTAAA +
Preference number: 4 (lower is better)
Translates to: IYSSKRWLASRWSKLFVSAEHKQ*DYLHCK
Trigger: TTTACAATGCAGATAGTCTCATTGCTTGTGTTCTGC...ACTGACGAACAACTTAGACCACCTACTGGCTAGCCATCTTTTTGAAGAATATAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR TCA 90 bp ACAGGCAGGGATTTTGTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAATTATACTGTGTATTCTaGGAAGAAAGCATCGCAGAG +
Preference number: 4 (lower is better)
Translates to: TGRDFVKTLSIGRCESTELYCVF*EESIAE
Trigger: CTCTGCGATGCTTTCTTCTCAGAATACACAGTATAA...TTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTACAAAATCCCTGCCTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR GCA 90 bp GCCTGGGTTTCCTCCTGGGAACTGTATGAAATATATTCTTCAAAAAGATGGCTAAGCAATGAGACTATCTaGATTGTAAAGATGGATGTG +
Preference number: 4 (lower is better)
Translates to: AWVSSWELYEIYSSKRWLSNETI*IVKMDV
Trigger: CACATCCATCTTTACAATGCAGATAGTCTCATTGCT...TAGCCATCTTTTTGAAGAATATATTTCATACAGTTCCCAGGAGGAAACCCAGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR GCA 90 bp TATGATGCTGAACACAGCAGAAAAACTGAGGCCAAAACCCTGAATTATGACAAACAGTTCAAGATAAACTaGAGCAACAAGCAGCACTTT +
Preference number: 4 (lower is better)
Translates to: YDAEHSRKTEAKTLNYDKQFKIN*SNKQHF
Trigger: AAAGTGCTGCTTGTTGCTGCAGTTTATCTTGAACTG...TTTGTCATAATTCAGGGTTTTGGCCTCAGTTTTTCTGCTGTGTTCAGCATCATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CCA 90 bp AAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACACACACCAAAGTGTTGTTaGAAAATCTCAAAAGCACTC +
Preference number: 4 (lower is better)
Translates to: KTLSIGRCESTESNMAPHTPKCC*KISKAL
Trigger: GAGTGCTTTTGAGATTTTCCAACAACACTTTGGTGT...GTGTGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp AGGGATTTTGTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACCGGACTTCTTTGATATaGCTTCCCAGATTGAGGAGT +
Preference number: 4 (lower is better)
Translates to: RDFVKTLSIGRCESTESNRTSLI*LPRLRS
Trigger: ACTCCTCAATCTGGGAAGCCATATCAAAGAAGTCCG...GTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTACAAAATCCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CCA 90 bp CTGAATTATGACAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTCAGAATGTGTGCTGCTaGAGCTTGTTATTCAAAAGA +
Preference number: 4 (lower is better)
Translates to: LNYDKTSVLLQADFCWLIQNVCC*SLLFKR
Trigger: TCTTTTGAATAACAAGCTCCAGCAGCACACATTCTG...AATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTTGTCATAATTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
3UTR CAA 72 bp TCTTCAAAAAGATGGCTAGCCAGTAGGTGGTCTAAGTaGTTCGTCAGTGGTATTTTTATAAGTATTTCTTCT +
Preference number: 4 (lower is better)
Translates to: SSKRWLASRWSK*FVSGIFISISS
Trigger: AGAAGAAATACTTATAAAAATACCACTGACGAACAACTTAGACCACCTACTGGCTAGCCATCTTTTTGAAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS CCA 90 bp ACTTTGTGCAGGGCAGCCAGGGCGCTGAGCAGGCAGACCTCACTGTaGACCAACTCACTGGTGCTCTTCATGGCTGTCAGCAGCGAAGGC +
Preference number: 5 (lower is better)
Translates to: TLCRAARALSRQTSL*TNSLVLFMAVSSEG
Trigger: GCCTTCGCTGCTGACAGCCATGAAGAGCACCAGTGAGTTGGTCCACAGTGAGGTCTGCCTGCTCAGCGCCCTGGCTGCCCTGCACAAAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS TCA 90 bp AGTGTGGCAGAGTCTCAACGACTTTGTGCAGGGCAGCCAGGGCGCTaGGCAGGCAGACCTCACTGTGGACCAACTCACTGGTGCTCTTCA +
Preference number: 5 (lower is better)
Translates to: SVAESQRLCAGQPGR*AGRPHCGPTHWCSS
Trigger: TGAAGAGCACCAGTGAGTTGGTCCACAGTGAGGTCTGCCTGCTCAGCGCCCTGGCTGCCCTGCACAAAGTCGTTGAGACTCTGCCACACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS TCA 90 bp GGCTCTCCCAGCACGGCCTCCAGCTGCTGGATGGTCTTCTGGCACTaGTGCTCCACTTCTTCACACTCGTCTTCCATCAGCTCTGCTAGG +
Preference number: 5 (lower is better)
Translates to: GSPSTASSCWMVFWH*CSTSSHSSSISSAR
Trigger: CCTAGCAGAGCTGATGGAAGACGAGTGTGAAGAAGTGGAGCATCAGTGCCAGAAGACCATCCAGCAGCTGGAGGCCGTGCTGGGAGAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS GCA 90 bp CTCCTGCAATGTGCTGAACAACAGAGGCCACCAGATGGGGAAGCATaGAGCGCAGGAGAGGGCTCACATCGTAGCTCTCGGAGATCCCGT +
Preference number: 5 (lower is better)
Translates to: LLQCAEQQRPPDGEA*SAGEGSHRSSRRSR
Trigger: ACGGGATCTCCGAGAGCTACGATGTGAGCCCTCTCCTGCGCTGCATGCTTCCCCATCTGGTGGCCTCTGTTGTTCAGCACATTGCAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 90 bp CCAGGCCAGTGCATCCGATGGCAAAGGCGGTGTCCCTGTCGATTGTaGCCGCCTCCTTGGGGTCAAATAACAGAGAGGCAACTTCACGTC +
Preference number: 5 (lower is better)
Translates to: PGQCIRWQRRCPCRL*PPPWGQITERQLHV
Trigger: GACGTGAAGTTGCCTCTCTGTTATTTGACCCCAAGGAGGCGGCCACAATCGACAGGGACACCGCCTTTGCCATCGGATGCACTGGCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 90 bp AGTAGCTCTGCAGCGGCTCTCCCAGCACGGCCTCCAGCTGCTGGATaGTCTTCTGGCACTGATGCTCCACTTCTTCACACTCGTCTTCCA +
Preference number: 5 (lower is better)
Translates to: SSSAAALPARPPAAG*SSGTDAPLLHTRLP
Trigger: TGGAAGACGAGTGTGAAGAAGTGGAGCATCAGTGCCAGAAGACCATCCAGCAGCTGGAGGCCGTGCTGGGAGAGCCGCTGCAGAGCTACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CCA 90 bp TGGGGTCAAATAACAGAGAGGCAACTTCACGTCTCGATAGGAGGCTaGGATCAGTTTGAGGGAGGGCGAGTCGCTGGAGCTGCTGGGCTA +
Preference number: 5 (lower is better)
Translates to: WGQITERQLHVSIGG*DQFEGGRVAGAAGL
Trigger: TAGCCCAGCAGCTCCAGCGACTCGCCCTCCCTCAAACTGATCCCAGCCTCCTATCGAGACGTGAAGTTGCCTCTCTGTTATTTGACCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 90 bp ATCCGATGGCAAAGGCGGTGTCCCTGTCGATTGTGGCCGCCTCCTTaGGGTCAAATAACAGAGAGGCAACTTCACGTCTCGATAGGAGGC +
Preference number: 5 (lower is better)
Translates to: IRWQRRCPCRLWPPP*GQITERQLHVSIGG
Trigger: GCCTCCTATCGAGACGTGAAGTTGCCTCTCTGTTATTTGACCCCAAGGAGGCGGCCACAATCGACAGGGACACCGCCTTTGCCATCGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS-3UTR CAA 90 bp AGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGAGGCTGGGATCAGTTaGAGGGAGGGCGAGTCGCTG +
Preference number: 5 (lower is better)
Translates to: SNSVQKAGEDSVVSQTGREAGIS*REGESL
Trigger: CAGCGACTCGCCCTCCCTCAAACTGATCCCAGCCTC...CCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CCA 90 bp GGTCTGGACGCTGCGCTCCAAGCCTTTTGCCAGCTGGCTGAACAATaGCGCTTCAAACTGTTCAAAGGCAGGGTCAATCCCAAGAAGCTC +
Preference number: 5 (lower is better)
Translates to: GLDAALQAFCQLAEQ*RFKLFKGRVNPKKL
Trigger: GAGCTTCTTGGGATTGACCCTGCCTTTGAACAGTTTGAAGCGCCATTGTTCAGCCAGCTGGCAAAAGGCTTGGAGCGCAGCGTCCAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 90 bp ACACAATGGTGGAGGCATAGAAGGCCAAGAGCACTCTCAACCGGGTaGAGCTTCCAGGATCCTCAGCGAAGGCCTTCACAGATCTCGTCA +
Preference number: 5 (lower is better)
Translates to: TQWWRHRRPRALSTG*SFQDPQRRPSQISS
Trigger: TGACGAGATCTGTGAAGGCCTTCGCTGAGGATCCTGGAAGCTCCACCCGGTTGAGAGTGCTCTTGGCCTTCTATGCCTCCACCATTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS TCA 90 bp CTGCTTTGGTCTGGACGCTGCGCTCCAAGCCTTTTGCCAGCTGGCTaGACAATGGCGCTTCAAACTGTTCAAAGGCAGGGTCAATCCCAA +
Preference number: 5 (lower is better)
Translates to: LLWSGRCAPSLLPAG*TMALQTVQRQGQSQ
Trigger: TTGGGATTGACCCTGCCTTTGAACAGTTTGAAGCGCCATTGTTCAGCCAGCTGGCAAAAGGCTTGGAGCGCAGCGTCCAGACCAAAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS GCA 90 bp CTGCTTGTTCACTGCTTTGGTCTGGACGCTGCGCTCCAAGCCTTTTaGCAGCTGGCTGAACAATGGCGCTTCAAACTGTTCAAAGGCAGG +
Preference number: 5 (lower is better)
Translates to: LLVHCFGLDAALQAF*QLAEQWRFKLFKGR
Trigger: CCTGCCTTTGAACAGTTTGAAGCGCCATTGTTCAGCCAGCTGGCAAAAGGCTTGGAGCGCAGCGTCCAGACCAAAGCAGTGAACAAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 90 bp CATTGTCTGATAGGTTCTCAGCGGCCACTAGAGCAGACACAATGGTaGAGGCATAGAAGGCCAAGAGCACTCTCAACCGGGTGGAGCTTC +
Preference number: 5 (lower is better)
Translates to: HCLIGSQRPLEQTQW*RHRRPRALSTGWSF
Trigger: GAAGCTCCACCCGGTTGAGAGTGCTCTTGGCCTTCTATGCCTCCACCATTGTGTCTGCTCTAGTGGCCGCTGAGAACCTATCAGACAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 90 bp CTACATTGTCTGATAGGTTCTCAGCGGCCACTAGAGCAGACACAATaGTGGAGGCATAGAAGGCCAAGAGCACTCTCAACCGGGTGGAGC +
Preference number: 5 (lower is better)
Translates to: LHCLIGSQRPLEQTQ*WRHRRPRALSTGWS
Trigger: GCTCCACCCGGTTGAGAGTGCTCTTGGCCTTCTATGCCTCCACCATTGTGTCTGCTCTAGTGGCCGCTGAGAACCTATCAGACAATGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 90 bp AGGGCCTGGAGACACTGGACGGCAGCTCTGCGGACTTCTTTGATATaGCTTCCCAGATTGAGGAGTAGAGACATCACCACTGGAGATGCA +
Preference number: 5 (lower is better)
Translates to: RAWRHWTAALRTSLI*LPRLRSRDITTGDA
Trigger: TGCATCTCCAGTGGTGATGTCTCTACTCCTCAATCTGGGAAGCCATATCAAAGAAGTCCGCAGAGCTGCCGTCCAGTGTCTCCAGGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp ACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTAGAGTCTCAACGACTTaGTGCAGGGCAGCCAGGGCG +
Preference number: 5 (lower is better)
Translates to: TLYKRQERILWYPRQAGIRVSTT*CRAARA
Trigger: CGCCCTGGCTGCCCTGCACAAAGTCGTTGAGACTCT...AATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp AACATGAGAATGAGTGTGACTTCTTCCCAGAGCACAGGCGGTGGGCAGATGCGCGGCGCATCTTCTGTCTaGGCCCAATCAAACAGCTTG +
Preference number: 5 (lower is better)
Translates to: NMRMSVTSSQSTGGGQMRGASSV*AQSNSL
Trigger: CAAGCTGTTTGATTGGGCCAAGACAGAAGATGCGCC...GCGCATCTGCCCACCGCCTGTGCTCTGGGAAGAAGTCACACTCATTCTCATGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CCA 90 bp TTCACTGCTTTGGTCTGGACGCTGCGCTCCAAGCCTTTTGCCAGCTaGCTGAACAATGGCGCTTCAAACTGTTCAAAGGCAGGGTCAATC +
Preference number: 5 (lower is better)
Translates to: FTALVWTLRSKPFAS*LNNGASNCSKAGSI
Trigger: GATTGACCCTGCCTTTGAACAGTTTGAAGCGCCATTGTTCAGCCAGCTGGCAAAAGGCTTGGAGCGCAGCGTCCAGACCAAAGCAGTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS GCA 90 bp CTTCAGCAAAATCTGGTAGTTCAGGGGTTTCCACATGGAGTCATCTaGCATGGCCACAGAGAACTGTGCGATGCAGGGCACCAGGTACTT +
Preference number: 5 (lower is better)
Translates to: LQQNLVVQGFPHGVI*HGHRELCDAGHQVL
Trigger: AAGTACCTGGTGCCCTGCATCGCACAGTTCTCTGTGGCCATGGCAGATGACTCCATGTGGAAACCCCTGAACTACCAGATTTTGCTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CCA 90 bp GCAAAATCTGGTAGTTCAGGGGTTTCCACATGGAGTCATCTGCCATaGCCACAGAGAACTGTGCGATGCAGGGCACCAGGTACTTGGTTA +
Preference number: 5 (lower is better)
Translates to: AKSGSSGVSTWSHLP*PQRTVRCRAPGTWL
Trigger: TAACCAAGTACCTGGTGCCCTGCATCGCACAGTTCTCTGTGGCCATGGCAGATGACTCCATGTGGAAACCCCTGAACTACCAGATTTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS TCA 90 bp CTCCTCCGGCAATCCTCTGTTCAACATCAGTTCCAGGTGCCACTCTaGGGGGATTTCCACAGCAGTGATGACGCTTTTGAGCTTCCTTAT +
Preference number: 5 (lower is better)
Translates to: LLRQSSVQHQFQVPL*GDFHSSDDAFELPY
Trigger: ATAAGGAAGCTCAAAAGCGTCATCACTGCTGTGGAAATCCCCTCAGAGTGGCACCTGGAACTGATGTTGAACAGAGGATTGCCGGAGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 90 bp TCTAAACACCTGGACAGCAAGTTGAAGAGGGGTGGGATCAGTATCTaGGGGCACTTGAGCTTCTTCTTGTGCTGCAGCAACTCCAGGATG +
Preference number: 5 (lower is better)
Translates to: SKHLDSKLKRGGISI*GHLSFFLCCSNSRM
Trigger: CATCCTGGAGTTGCTGCAGCACAAGAAGAAGCTCAAGTGCCCTCAGATACTGATCCCACCCCTCTTCAACTTGCTGTCCAGGTGTTTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CCA 90 bp AACGATGAAATGTTTTCATCCAGCTGCTTGTTCACTGCTTTGGTCTaGACGCTGCGCTCCAAGCCTTTTGCCAGCTGGCTGAACAATGGC +
Preference number: 5 (lower is better)
Translates to: NDEMFSSSCLFTALV*TLRSKPFASWLNNG
Trigger: GCCATTGTTCAGCCAGCTGGCAAAAGGCTTGGAGCGCAGCGTCCAGACCAAAGCAGTGAACAAGCAGCTGGATGAAAACATTTCATCGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 90 bp TCCTTCTCCACCTTCTCTAGGAGTTGTTCCACCATAGGCAGCAGCTaGGCAAGCACCATCTCACTGTTCACACCTTGGAGTACTTTCATC +
Preference number: 5 (lower is better)
Translates to: SFSTFSRSCSTIGSS*ASTISLFTPWSTFI
Trigger: GATGAAAGTACTCCAAGGTGTGAACAGTGAGATGGTGCTTGCCCAGCTGCTGCCTATGGTGGAACAACTCCTAGAGAAGGTGGAGAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CCA 90 bp AGTCTCTTGTCTTCAGCAAAATCTGGTAGTTCAGGGGTTTCCACATaGAGTCATCTGCCATGGCCACAGAGAACTGTGCGATGCAGGGCA +
Preference number: 5 (lower is better)
Translates to: SLLSSAKSGSSGVST*SHLPWPQRTVRCRA
Trigger: TGCCCTGCATCGCACAGTTCTCTGTGGCCATGGCAGATGACTCCATGTGGAAACCCCTGAACTACCAGATTTTGCTGAAGACAAGAGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR CAA 90 bp ACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTATTGTGGCCGCCTCCTaGGGGTCAAATAACAGAGAG +
Preference number: 5 (lower is better)
Translates to: TLYKRQERILWYPRQAGIIVAAS*GSNNRE
Trigger: CTCTCTGTTATTTGACCCCAAGGAGGCGGCCACAAT...AATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp ACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTCACTTGAGCTTCTTCTaGTGCTGCAGCAACTCCAGG +
Preference number: 5 (lower is better)
Translates to: TLYKRQERILWYPRQAGIHLSFF*CCSNSR
Trigger: CCTGGAGTTGCTGCAGCACAAGAAGAAGCTCAAGTG...AATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp CATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGCACCTGGACAGCAAGTaGAAGAGGGGTGGGATCAGT +
Preference number: 5 (lower is better)
Translates to: HPVYSLATLYKRQERILWHLDSK*KRGGIS
Trigger: ACTGATCCCACCCCTCTTCAACTTGCTGTCCAGGTG...CCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp CTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTGGCGCATCTTCTGTCTaGGCCCAATCAAACAGCTTG +
Preference number: 5 (lower is better)
Translates to: LCTKGRRGFCGIPDRQGFGASSV*AQSNSL
Trigger: CAAGCTGTTTGATTGGGCCAAGACAGAAGATGCGCC...AAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 90 bp AATGCATGGCATCAGAAACCTCCAGCAGCATCTCAAAGATACCAATaGGCAGGTGCAGGTAGTGTCTGCTGTCTTCATCTAGCTGCTCGG +
Preference number: 5 (lower is better)
Translates to: NAWHQKPPAASQRYQ*AGAGSVCCLHLAAR
Trigger: CCGAGCAGCTAGATGAAGACAGCAGACACTACCTGCACCTGCTCATTGGTATCTTTGAGATGCTGCTGGAGGTTTCTGATGCCATGCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 90 bp TGGTGGAACAGCTCCTGCTTTTTAAGGCCTGTGATCTCCTTCAGGTaGTCCTCTAACACAGCATCCAACGCTCTGGGGTATTTGCTTTCT +
Preference number: 5 (lower is better)
Translates to: WWNSSCFLRPVISFR*SSNTASNALGYLLS
Trigger: AGAAAGCAAATACCCCAGAGCGTTGGATGCTGTGTTAGAGGAGCACCTGAAGGAGATCACAGGCCTTAAAAAGCAGGAGCTGTTCCACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 90 bp ACCAGTTTGAGAAAGCGGTGGACCATTTTCTTCCTCCAGAATGTGTaGTGCTGGAGCTTGTTATTCAAAAGATCCAGCGCCTTCCGACGC +
Preference number: 5 (lower is better)
Translates to: TSLRKRWTIFFLQNV*CWSLLFKRSSAFRR
Trigger: GCGTCGGAAGGCGCTGGATCTTTTGAATAACAAGCTCCAGCAGCACACATTCTGGAGGAAGAAAATGGTCCACCGCTTTCTCAAACTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CCA 90 bp TTGAGAAAGCGGTGGACCATTTTCTTCCTCCAGAATGTGTGCTGCTaGAGCTTGTTATTCAAAAGATCCAGCGCCTTCCGACGCACAGAC +
Preference number: 5 (lower is better)
Translates to: LRKRWTIFFLQNVCC*SLLFKRSSAFRRTD
Trigger: GTCTGTGCGTCGGAAGGCGCTGGATCTTTTGAATAACAAGCTCCAGCAGCACACATTCTGGAGGAAGAAAATGGTCCACCGCTTTCTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR CAA 90 bp TCAAAAAGATGGCTAGCCAGTAGGTGGTCTAAGTTGTTCGTCAGTGGTATTTTTGAGGCTGGGATCAGTTaGAGGGAGGGCGAGTCGCTG +
Preference number: 5 (lower is better)
Translates to: SKRWLASRWSKLFVSGIFEAGIS*REGESL
Trigger: CAGCGACTCGCCCTCCCTCAAACTGATCCCAGCCTC...AAAAATACCACTGACGAACAACTTAGACCACCTACTGGCTAGCCATCTTTTTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CAA 90 bp ACAGGCAGGGATTTTGTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAACGGTGTCCCTGTCGATaGTGGCCGCCTCCTTGGGGT +
Preference number: 5 (lower is better)
Translates to: TGRDFVKTLSIGRCESTERCPCR*WPPPWG
Trigger: ACCCCAAGGAGGCGGCCACAATCGACAGGGACACCG...TTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTACAAAATCCCTGCCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp CAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTGTGGGCAGCAAGGCATaGACCTTATCCAGCATGTCG +
Preference number: 5 (lower is better)
Translates to: QNKCSAPSRFLLVDWRSSVGSKA*TLSSMS
Trigger: CGACATGCTGGATAAGGTCAATGCCTTGCTGCCCAC...ACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS GCA 90 bp TTGCCTCCACTCGTAGAGAGAGAAATGAACTGGTGGAACAGCTCCTaGTTTTTAAGGCCTGTGATCTCCTTCAGGTGCTCCTCTAACACA +
Preference number: 5 (lower is better)
Translates to: LPPLVEREMNWWNSS*FLRPVISFRCSSNT
Trigger: TGTGTTAGAGGAGCACCTGAAGGAGATCACAGGCCTTAAAAAGCAGGAGCTGTTCCACCAGTTCATTTCTCTCTCTACGAGTGGAGGCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 90 bp AGTTTGAGAAAGCGGTGGACCATTTTCTTCCTCCAGAATGTGTGCTaGTGGAGCTTGTTATTCAAAAGATCCAGCGCCTTCCGACGCACA +
Preference number: 5 (lower is better)
Translates to: SLRKRWTIFFLQNVC*WSLLFKRSSAFRRT
Trigger: TGTGCGTCGGAAGGCGCTGGATCTTTTGAATAACAAGCTCCAGCAGCACACATTCTGGAGGAAGAAAATGGTCCACCGCTTTCTCAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CCA 90 bp CTCCTTTTTCTCTGGTTCTATCAGCTTTACTGCAGTGCTGAGAACTaGTATGAAAGGCTCTCGGTTCTGTGCCCCGAAGTTCTTGCACAG +
Preference number: 5 (lower is better)
Translates to: LLFLWFYQLYCSAEN*YERLSVLCPEVLAQ
Trigger: CTGTGCAAGAACTTCGGGGCACAGAACCGAGAGCCTTTCATACCAGTTCTCAGCACTGCAGTAAAGCTGATAGAACCAGAGAAAAAGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR CAA 90 bp AACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATGTGTGCTGCTGGAGCTaGTTATTCAAAAGATCCAGC +
Preference number: 5 (lower is better)
Translates to: NSVQKAGEDSVVSQTGRDVCCWS*LFKRSS
Trigger: GCTGGATCTTTTGAATAACAAGCTCCAGCAGCACAC...ATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp ACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTCCAGCTCCCTTTTCTTATGTaGCACAATGGCCAGAAGGAC +
Preference number: 5 (lower is better)
Translates to: TSVLLQADFCWLIGAQVQLPFLM*HNGQKD
Trigger: GTCCTTCTGGCCATTGTGCAACATAAGAAAAGGGAG...CTGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS TCA 90 bp CGCTGGCTTGAGGAGGAAATAAGGAGACAAGTGAAGGAGGAACGATaGAATGTTTTCATCCAGCTGCTTGTTCACTGCTTTGGTCTGGAC +
Preference number: 5 (lower is better)
Translates to: RWLEEEIRRQVKEER*NVFIQLLVHCFGLD
Trigger: GTCCAGACCAAAGCAGTGAACAAGCAGCTGGATGAAAACATTTCATCGTTCCTCCTTCACTTGTCTCCTTATTTCCTCCTCAAGCCAGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS TCA 90 bp TGTGGAACCTGTGAATCAGCCATTCCAGACACTTCTGCGCTGGCTTaGGGAGGAAATAAGGAGACAAGTGAAGGAGGAACGATGAAATGT +
Preference number: 5 (lower is better)
Translates to: CGTCESAIPDTSALA*GGNKETSEGGTMKC
Trigger: ACATTTCATCGTTCCTCCTTCACTTGTCTCCTTATTTCCTCCTCAAGCCAGCGCAGAAGTGTCTGGAATGGCTGATTCACAGGTTCCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS TCA 90 bp CCCTTTTCTTATGTTGCACAATGGCCAGAAGGACTGGAACCAGTTTaGGAAAGCGGTGGACCATTTTCTTCCTCCAGAATGTGTGCTGCT +
Preference number: 5 (lower is better)
Translates to: PFSYVAQWPEGLEPV*ESGGPFSSSRMCAA
Trigger: AGCAGCACACATTCTGGAGGAAGAAAATGGTCCACCGCTTTCTCAAACTGGTTCCAGTCCTTCTGGCCATTGTGCAACATAAGAAAAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS TCA 90 bp GATCCACCAGGGGCATCATCAGGGCTTCTGCTCTCTCCCTACTCATaGAATTCTGGGTGTCAAAAAGGAAGACCTTATACAAGCAGTTCA +
Preference number: 5 (lower is better)
Translates to: DPPGASSGLLLSPYS*NSGCQKGRPYTSSS
Trigger: TGAACTGCTTGTATAAGGTCTTCCTTTTTGACACCCAGAATTTCATGAGTAGGGAGAGAGCAGAAGCCCTGATGATGCCCCTGGTGGATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS GCA 90 bp AGCTTTGCTGAGCAGCGCTCGCCAAAACTTCCCAGTCAGTTTGTCTaGATTCTTTTCCATGGACTGTGCTACCGTGTTAATATAGCTGAG +
Preference number: 5 (lower is better)
Translates to: SFAEQRSPKLPSQFV*ILFHGLCYRVNIAE
Trigger: CTCAGCTATATTAACACGGTAGCACAGTCCATGGAAAAGAATGCAGACAAACTGACTGGGAAGTTTTGGCGAGCGCTGCTCAGCAAAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CCA 90 bp ATCCTCTGCCTCCCTTTTCTTATGTTGCACAATGGCCAGAAGGACTaGAACCAGTTTGAGAAAGCGGTGGACCATTTTCTTCCTCCAGAA +
Preference number: 5 (lower is better)
Translates to: ILCLPFLMLHNGQKD*NQFEKAVDHFLPPE
Trigger: TTCTGGAGGAAGAAAATGGTCCACCGCTTTCTCAAACTGGTTCCAGTCCTTCTGGCCATTGTGCAACATAAGAAAAGGGAGGCAGAGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR CAA 90 bp CATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTTTTCATCCAGCTGCTaGTTCACTGCTTTGGTCTGG +
Preference number: 5 (lower is better)
Translates to: HPVYSLATLYKRQERILWFSSSC*FTALVW
Trigger: CCAGACCAAAGCAGTGAACAAGCAGCTGGATGAAAA...CCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp AGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGCAGTGATGACGCTTTaGAGCTTCCTTATCTTTTTC +
Preference number: 5 (lower is better)
Translates to: SNSVQKAGEDSVVSQTGRAVMTL*SFLIFF
Trigger: GAAAAAGATAAGGAAGCTCAAAAGCGTCATCACTGC...CCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTGTGGGCAGCAAGGCATaGACCTTATCCAGCATGTCG +
Preference number: 5 (lower is better)
Translates to: KYHPVYSLATLYKRQERIVGSKA*TLSSMS
Trigger: CGACATGCTGGATAAGGTCAATGCCTTGCTGCCCAC...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp CTGAATTATGACAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTAGAGTCTCAACGACTTaGTGCAGGGCAGCCAGGGCG +
Preference number: 5 (lower is better)
Translates to: LNYDKTSVLLQADFCWLIRVSTT*CRAARA
Trigger: CGCCCTGGCTGCCCTGCACAAAGTCGTTGAGACTCT...AATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTTGTCATAATTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS TCA 90 bp CCCGCACAAATACCCGTGTCTCATGGTACGGCAGAACACAAGCAATaGGACTATCTGCATTGTAAAGATGGATGTGGAACCTGTGAATCA +
Preference number: 5 (lower is better)
Translates to: PAQIPVSHGTAEHKQ*DYLHCKDGCGTCES
Trigger: TGATTCACAGGTTCCACATCCATCTTTACAATGCAGATAGTCTCATTGCTTGTGTTCTGCCGTACCATGAGACACGGGTATTTGTGCGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS TCA 90 bp TGTTCAGCATCGACAGAAATCCCCTTAAAAACACTGCCGACCGTCTaGACACAGTGTGCGTCTTTGCAGTTCACTAACAAGTCAAACAGC +
Preference number: 5 (lower is better)
Translates to: CSASTEIPLKTLPTV*TQCASLQFTNKSNS
Trigger: GCTGTTTGACTTGTTAGTGAACTGCAAAGACGCACACTGTGTTCAGACGGTCGGCAGTGTTTTTAAGGGGATTTCTGTCGATGCTGAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 90 bp GGTAGTGGAGGATATGCATCAAGCTCTGGACCTGATGCTGGACACTaGATTCACAACAGACTGAAATCCAGAACTCAGTATCTGCCTCTA +
Preference number: 5 (lower is better)
Translates to: GSGGYASSSGPDAGH*IHNRLKSRTQYLPL
Trigger: TAGAGGCAGATACTGAGTTCTGGATTTCAGTCTGTTGTGAATTCAGTGTCCAGCATCAGGTCCAGAGCTTGATGCATATCCTCCACTACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS GCA 90 bp TACCCGTGTCTCATGGTACGGCAGAACACAAGCAATGAGACTATCTaGATTGTAAAGATGGATGTGGAACCTGTGAATCAGCCATTCCAG +
Preference number: 5 (lower is better)
Translates to: YPCLMVRQNTSNETI*IVKMDVEPVNQPFQ
Trigger: CTGGAATGGCTGATTCACAGGTTCCACATCCATCTTTACAATGCAGATAGTCTCATTGCTTGTGTTCTGCCGTACCATGAGACACGGGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 90 bp CCACTTCTTCACACTCGTCTTCCATCAGCTCTGCTAGGAAAGGAATaGACTCTGGTAGCAGAACAATGTAATTCTCTCTCAGCTTCTCAG +
Preference number: 5 (lower is better)
Translates to: PLLHTRLPSALLGKE*TLVAEQCNSLSASQ
Trigger: CTGAGAAGCTGAGAGAGAATTACATTGTTCTGCTACCAGAGTCCATTCCTTTCCTAGCAGAGCTGATGGAAGACGAGTGTGAAGAAGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR CAA 90 bp AACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATAGAGATTCAGAAGACTaGAAACCGTCTCTTCTACAC +
Preference number: 5 (lower is better)
Translates to: NSVQKAGEDSVVSQTGRDRDSED*KPSLLH
Trigger: GTGTAGAAGAGACGGTTTCAAGTCTTCTGAATCTCT...ATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp TCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTACTCCCTTTTCTTATGTaGCACAATGGCCAGAAGGAC +
Preference number: 5 (lower is better)
Translates to: SGLLLSNSVQKAGEDSVVLPFLM*HNGQKD
Trigger: GTCCTTCTGGCCATTGTGCAACATAAGAAAAGGGAG...TACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 90 bp TGTCGCTGTAAGAGAATTATCAGGCAACCTAATCCATCATTGACCTaGGAAGGAACCTTGGTCAGTGTTTTGATGAGCTGGGATGCCAGT +
Preference number: 5 (lower is better)
Translates to: CRCKRIIRQPNPSLT*EGTLVSVLMSWDAS
Trigger: ACTGGCATCCCAGCTCATCAAAACACTGACCAAGGTTCCTTCTCAGGTCAATGATGGATTAGGTTGCCTGATAATTCTCTTACAGCGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 90 bp TCAAGCACCCTGAACCACCCCTCGTTCTTTGAAAGGTCTGCTCTTTaGAAGAGATTCAGAAGACTTGAAACCGTCTCTTCTACACCAAAG +
Preference number: 5 (lower is better)
Translates to: SSTLNHPSFFERSAL*KRFRRLETVSSTPK
Trigger: CTTTGGTGTAGAAGAGACGGTTTCAAGTCTTCTGAATCTCTTTCAAAGAGCAGACCTTTCAAAGAACGAGGGGTGGTTCAGGGTGCTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 90 bp CACCATCTCACTGTTCACACCTTGGAGTACTTTCATCAAGCCTTTTaGAATGTAAGATGGGCAGCCATACACACAGTGAAGAAGGCTTCT +
Preference number: 5 (lower is better)
Translates to: HHLTVHTLEYFHQAF*NVRWAAIHTVKKAS
Trigger: AGAAGCCTTCTTCACTGTGTGTATGGCTGCCCATCTTACATTGCAAAAGGCTTGATGAAAGTACTCCAAGGTGTGAACAGTGAGATGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CCA 90 bp CTGGTAAAGAGGATTTCAATCCCTTTTGGATGTATGGAAAGAGTTTaGCGACTACATTGTCTGATAGGTTCTCAGCGGCCACTAGAGCAG +
Preference number: 5 (lower is better)
Translates to: LVKRISIPFGCMERV*RLHCLIGSQRPLEQ
Trigger: CTGCTCTAGTGGCCGCTGAGAACCTATCAGACAATGTAGTCGCCAAACTCTTTCCATACATCCAAAAGGGATTGAAATCCTCTTTACCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 90 bp GTTCACACCTTGGAGTACTTTCATCAAGCCTTTTGCAATGTAAGATaGGCAGCCATACACACAGTGAAGAAGGCTTCTCAGGGTTTCAGA +
Preference number: 5 (lower is better)
Translates to: VHTLEYFHQAFCNVR*AAIHTVKKASQGFR
Trigger: TCTGAAACCCTGAGAAGCCTTCTTCACTGTGTGTATGGCTGCCCATCTTACATTGCAAAAGGCTTGATGAAAGTACTCCAAGGTGTGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp GCCTGGGTTTCCTCCTGGGAACTGTATGAAATATATTCTTCAAAAAGATGGCTAATTGTGGCCGCCTCCTaGGGGTCAAATAACAGAGAG +
Preference number: 5 (lower is better)
Translates to: AWVSSWELYEIYSSKRWLIVAAS*GSNNRE
Trigger: CTCTCTGTTATTTGACCCCAAGGAGGCGGCCACAAT...TAGCCATCTTTTTGAAGAATATATTTCATACAGTTCCCAGGAGGAAACCCAGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CAA 90 bp GCAGGAGAGGATTCTGTGGTATCCCAGACAGGCAGGGATTTTGTAAAAACATTAATATGGCTTCCCAGATaGAGGAGTAGAGACATCACC +
Preference number: 5 (lower is better)
Translates to: AGEDSVVSQTGRDFVKTLIWLPR*RSRDIT
Trigger: GGTGATGTCTCTACTCCTCAATCTGGGAAGCCATAT...TAATGTTTTTACAAAATCCCTGCCTGTCTGGGATACCACAGAATCCTCTCCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp AGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTCCAGGGTTGGCAACATTTCATCTaGTACTTCACTCTTAGTAGA +
Preference number: 5 (lower is better)
Translates to: SVLLQADFCWLIGAQVQGWQHFI*YFTLSR
Trigger: TCTACTAAGAGTGAAGTACAAGATGAAATGTTGCCA...ACCCTGGACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS TCA 90 bp CTGAGAAGGAACCTTGGTCAGTGTTTTGATGAGCTGGGATGCCAGTaGCTTCACAAAGGTATCTTCCATCGTTACTTTCACAGAAATCTG +
Preference number: 5 (lower is better)
Translates to: LRRNLGQCFDELGCQ*LHKGIFHRYFHRNL
Trigger: CAGATTTCTGTGAAAGTAACGATGGAAGATACCTTTGTGAAGTCACTGGCATCCCAGCTCATCAAAACACTGACCAAGGTTCCTTCTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS TCA 90 bp CTTTCTGTAAGAGTGAAGCTGAATACTCATTGTATTTCCCCAGAGTaGGATGCAAAACAACAGCCTCATCTTTCAGGACAGCTGTGGGCT +
Preference number: 5 (lower is better)
Translates to: LSVRVKLNTHCISPE*DAKQQPHLSGQLWA
Trigger: AGCCCACAGCTGTCCTGAAAGATGAGGCTGTTGTTTTGCATCTCACTCTGGGGAAATACAATGAGTATTCAGCTTCACTCTTACAGAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 90 bp GTAATCTTTTCGAGAGCAGTGATCCGAACAGTTGGCATTCCTGGGTaGAGCTCCTTTGTTGTGTGCATAGCTTTTATGAACAGGTCTAGA +
Preference number: 5 (lower is better)
Translates to: VIFSRAVIRTVGIPG*SSFVVCIAFMNRSR
Trigger: TCTAGACCTGTTCATAAAAGCTATGCACACAACAAAGGAGCTTCACCCAGGAATGCCAACTGTTCGGATCACTGCTCTCGAAAAGATTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 90 bp AGCAAACAACTCAGAATTAACTGCTTAGTGTACTCCATGTTCCCCTaGTCTGATGACAAAGGCTCTAAACACCTGGACAGCAAGTTGAAG +
Preference number: 5 (lower is better)
Translates to: SKQLRINCLVYSMFP*SDDKGSKHLDSKLK
Trigger: CTTCAACTTGCTGTCCAGGTGTTTAGAGCCTTTGTCATCAGAGCAGGGGAACATGGAGTACACTAAGCAGTTAATTCTGAGTTGTTTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 90 bp TGGGTGTCAAAAAGGAAGACCTTATACAAGCAGTTCAAGATAAACTaGAGCAACAAGCAGCACTTTTCAGGGTCACGTTCGGAGTCAAAG +
Preference number: 5 (lower is better)
Translates to: WVSKRKTLYKQFKIN*SNKQHFSGSRSESK
Trigger: CTTTGACTCCGAACGTGACCCTGAAAAGTGCTGCTTGTTGCTGCAGTTTATCTTGAACTGCTTGTATAAGGTCTTCCTTTTTGACACCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS-3UTR CAA 90 bp TCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTATCTAGACGCATGACATaGGCTCCCATGAATGTAAAA +
Preference number: 5 (lower is better)
Translates to: SGLLLSNSVQKAGEDSVVSRRMT*APMNVK
Trigger: TTTTACATTCATGGGAGCCAATGTCATGCGTCTAGA...TACCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp CAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGGCGCTCAAGTAACTTCCCAGTCAGTTaGTCTGCATTCTTTTCCATG +
Preference number: 5 (lower is better)
Translates to: QNKCSAPSRFLLVDWRSSNFPVS*SAFFSM
Trigger: CATGGAAAAGAATGCAGACAAACTGACTGGGAAGTT...ACTTGAGCGCCAATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CAA 90 bp ATAAAAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGACCACCCCTCGTTCTTaGAAAGGTCTGCTCTTTGAA +
Preference number: 5 (lower is better)
Translates to: IKIPSGLLLSNSVQKAGETTPRS*KGLLFE
Trigger: TTCAAAGAGCAGACCTTTCAAAGAACGAGGGGTGGT...CTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTTTTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTTTTCTGCCTTCTCGTTaGCTGAATTGTGCCCAAAGA +
Preference number: 5 (lower is better)
Translates to: KYHPVYSLATLYKRQERIFLPSR*LNCAQR
Trigger: TCTTTGGGCACAATTCAGCAAACGAGAAGGCAGAAA...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp CATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTCTGTGGTGGCAACATTTCATCTaGTACTTCACTCTTAGTAGA +
Preference number: 5 (lower is better)
Translates to: HPVYSLATLYKRQERILWWQHFI*YFTLSR
Trigger: TCTACTAAGAGTGAAGTACAAGATGAAATGTTGCCA...CCACAGAATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 90 bp ATCACCCCAATGTGCTCTTGTAAGATGCTCATAAATGGGCCCATGTaGTTCTTCCAGTTCTTCTGGATCTGTTTGAAAGTCTTGCTAATG +
Preference number: 5 (lower is better)
Translates to: ITPMCSCKMLINGPM*FFQFFWICLKVLLM
Trigger: CATTAGCAAGACTTTCAAACAGATCCAGAAGAACTGGAAGAATCACATGGGCCCATTTATGAGCATCTTACAAGAGCACATTGGGGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CCA 90 bp TCCACAACATCTTTAGGTATTCTGCCACCATCTGGGGAGAGTTTTTaGCAGATGTTGAGCAAACAACTCAGAATTAACTGCTTAGTGTAC +
Preference number: 5 (lower is better)
Translates to: STTSLGILPPSGESF*QMLSKQLRINCLVY
Trigger: GTACACTAAGCAGTTAATTCTGAGTTGTTTGCTCAACATCTGCCAAAAACTCTCCCCAGATGGTGGCAGAATACCTAAAGATGTTGTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp TGGGAACTGTATGAAATATATTCTTCAAAAAGATGGCTAGCCAGTAGGTGGTCTTTTTCATCCAGCTGCTaGTTCACTGCTTTGGTCTGG +
Preference number: 5 (lower is better)
Translates to: WELYEIYSSKRWLASRWSFSSSC*FTALVW
Trigger: CCAGACCAAAGCAGTGAACAAGCAGCTGGATGAAAA...AGACCACCTACTGGCTAGCCATCTTTTTGAAGAATATATTTCATACAGTTCCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000221046.2
CDS-3UTR CAA 90 bp TATGATGCTGAACACAGCAGAAAAACTGAGGCCAAAACCCTGAATTATGACAAAGTGTGCTGCTGGAGCTaGTTATTCAAAAGATCCAGC +
Preference number: 5 (lower is better)
Translates to: YDAEHSRKTEAKTLNYDKVCCWS*LFKRSS
Trigger: GCTGGATCTTTTGAATAACAAGCTCCAGCAGCACAC...TTTGTCATAATTCAGGGTTTTGGCCTCAGTTTTTCTGCTGTGTTCAGCATCATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CAA 90 bp CTGAATTATGACAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTGCCCAATCAAACAGCTaGAAGAAGAGAGGCCTGAAT +
Preference number: 5 (lower is better)
Translates to: LNYDKTSVLLQADFCWLIAQSNS*KKRGLN
Trigger: ATTCAGGCCTCTCTTCTTCAAGCTGTTTGATTGGGC...AATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTTGTCATAATTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS TCA 90 bp AACACTGTAGAGCGCTCTCCTAAACTTAAATTGCTGCCCAGCAGCTaGACCATCTTCTGGTTTCCTACACCAATTATTTCTCTTGATTTT +
Preference number: 5 (lower is better)
Translates to: NTVERSPKLKLLPSS*TIFWFPTPIISLDF
Trigger: AAAATCAAGAGAAATAATTGGTGTAGGAAACCAGAAGATGGTTCAGCTGCTGGGCAGCAATTTAAGTTTAGGAGAGCGCTCTACAGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 90 bp AAGGACACTGACAAATACTTAAAATGCCGAAGCTGCTTGCTTGTGTaGGCGTCCACCTTAAAAACTGGCAACATTTCATCTTGTACTTCA +
Preference number: 5 (lower is better)
Translates to: KDTDKYLKCRSCLLV*ASTLKTGNISSCTS
Trigger: TGAAGTACAAGATGAAATGTTGCCAGTTTTTAAGGTGGACGCTCACACAAGCAAGCAGCTTCGGCATTTTAAGTATTTGTCAGTGTCCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS GCA 90 bp TCTTGTAGATGTACCTTCATTATAAGCCTAATCAGAACCCTGAAATaGATGGCATCAGAAACCTCCAGCAGCATCTCAAAGATACCAATG +
Preference number: 5 (lower is better)
Translates to: SCRCTFIISLIRTLK*MASETSSSISKIPM
Trigger: CATTGGTATCTTTGAGATGCTGCTGGAGGTTTCTGATGCCATGCATTTCAGGGTTCTGATTAGGCTTATAATGAAGGTACATCTACAAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp ATAAAAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGAACGCTCTGGGGTATTaGCTTTCTAAAAGTCTGATG +
Preference number: 5 (lower is better)
Translates to: IKIPSGLLLSNSVQKAGENALGY*LSKSLM
Trigger: CATCAGACTTTTAGAAAGCAAATACCCCAGAGCGTT...CTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp GTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCACTTTCATCAAGCCTTTaGCAATGTAAGATGGGCAGC +
Preference number: 5 (lower is better)
Translates to: VKTLSIGRCESTESNMAPLSSSL*QCKMGS
Trigger: GCTGCCCATCTTACATTGCAAAAGGCTTGATGAAAG...TGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp ACAGGCAGGGATTTTGTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAATCTGGGGAGAGTTTTaGGCAGATGTTGAGCAAACA +
Preference number: 5 (lower is better)
Translates to: TGRDFVKTLSIGRCESTEIWGEF*ADVEQT
Trigger: TGTTTGCTCAACATCTGCCAAAAACTCTCCCCAGAT...TTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTACAAAATCCCTGCCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp ATAAAAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGAACTTCCCAGTCAGTTaGTCTGCATTCTTTTCCATG +
Preference number: 5 (lower is better)
Translates to: IKIPSGLLLSNSVQKAGENFPVS*SAFFSM
Trigger: CATGGAAAAGAATGCAGACAAACTGACTGGGAAGTT...CTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp ACAGGCAGGGATTTTGTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAATCTGTTTGAAAGTCTaGCTAATGGCTGGCAGTAGG +
Preference number: 5 (lower is better)
Translates to: TGRDFVKTLSIGRCESTEICLKV*LMAGSR
Trigger: CCTACTGCCAGCCATTAGCAAGACTTTCAAACAGAT...TTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTACAAAATCCCTGCCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp CTGAATTATGACAAAACAAGTGTTCTGCTCCAAGCAGATTTCTGCTGGTTGATTATCTGTTTGAAAGTCTaGCTAATGGCTGGCAGTAGG +
Preference number: 5 (lower is better)
Translates to: LNYDKTSVLLQADFCWLIICLKV*LMAGSR
Trigger: CCTACTGCCAGCCATTAGCAAGACTTTCAAACAGAT...AATCAACCAGCAGAAATCTGCTTGGAGCAGAACACTTGTTTTGTCATAATTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS-3UTR CAA 90 bp AAATACCATCCGGTTTACTCCTTAGCAACTCTGTACAAAAGGCAGGAGAGGATTAGTTTTTGGCAGATGTaGAGCAAACAACTCAGAATT +
Preference number: 5 (lower is better)
Translates to: KYHPVYSLATLYKRQERISFWQM*SKQLRI
Trigger: AATTCTGAGTTGTTTGCTCAACATCTGCCAAAAACT...AATCCTCTCCTGCCTTTTGTACAGAGTTGCTAAGGAGTAAACCGGATGGTATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp AGGGATTTTGTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACACTATCAGCTCCACGTaGAACTTCTCCTCATCCACA +
Preference number: 5 (lower is better)
Translates to: RDFVKTLSIGRCESTESNTISST*NFSSST
Trigger: TGTGGATGAGGAGAAGTTCAACGTGGAGCTGATAGT...GTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTACAAAATCCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp AGGGATTTTGTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACGCCCAATCAAACAGCTaGAAGAAGAGAGGCCTGAAT +
Preference number: 5 (lower is better)
Translates to: RDFVKTLSIGRCESTESNAQSNS*KKRGLN
Trigger: ATTCAGGCCTCTCTTCTTCAAGCTGTTTGATTGGGC...GTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTACAAAATCCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp GTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACATGGCACCAAAGGCTTCGTCTGTTTaGGAGATGTTTACTTGGTTC +
Preference number: 5 (lower is better)
Translates to: VKTLSIGRCESTESNMAPKASSV*EMFTWF
Trigger: GAACCAAGTAAACATCTCCAAAACAGACGAAGCCTT...TGGTGCCATGTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp TATGATGCTGAACACAGCAGAAAAACTGAGGCCAAAACCCTGAATTATGACAAAAAGGCTTCGTCTGTTTaGGAGATGTTTACTTGGTTC +
Preference number: 5 (lower is better)
Translates to: YDAEHSRKTEAKTLNYDKKASSV*EMFTWF
Trigger: GAACCAAGTAAACATCTCCAAAACAGACGAAGCCTT...TTTGTCATAATTCAGGGTTTTGGCCTCAGTTTTTCTGCTGTGTTCAGCATCATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000222091.2
CDS TCA 90 bp TGTTCAACATTCCTAGTGACTTCTACAGAGTCTCCAGTATCAGACTaGATAAGTGCTGGAATGACCATTTTCACTGTCTTGCTAATAACT +
Preference number: 5 (lower is better)
Translates to: CSTFLVTSTESPVSD*ISAGMTIFTVLLIT
Trigger: AGTTATTAGCAAGACAGTGAAAATGGTCATTCCAGCACTTATTCAGTCTGATACTGGAGACTCTGTAGAAGTCACTAGGAATGTTGAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS-3UTR CAA 90 bp AGGGATTTTGTAAAAACATTAAGTATCGGCAGATGTGAAAGTACCGAAAGTAACCAGTTCTATTCTGATTaGTTCAGCATCGACAGAAAT +
Preference number: 5 (lower is better)
Translates to: RDFVKTLSIGRCESTESNQFYSD*FSIDRN
Trigger: ATTTCTGTCGATGCTGAACAAATCAGAATAGAACTG...GTTACTTTCGGTACTTTCACATCTGCCGATACTTAATGTTTTTACAAAATCCCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CCA 72 bp ATGGCTGTCAGCAGCGAAGGCATCAGGCTGGGCAGCTaGGGGATGGCCAGCGCTTCCAGAGTGGACGTCACC +
Preference number: 6 (lower is better)
Translates to: MAVSSEGIRLGS*GMASASRVDVT
Trigger: GGTGACGTCCACTCTGGAAGCGCTGGCCATCCCCCAGCTGCCCAGCCTGATGCCTTCGCTGCTGACAGCCAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CCA 72 bp AGGGCAGCCAGGGCGCTGAGCAGGCAGACCTCACTGTaGACCAACTCACTGGTGCTCTTCATGGCTGTCAGC +
Preference number: 6 (lower is better)
Translates to: RAARALSRQTSL*TNSLVLFMAVS
Trigger: GCTGACAGCCATGAAGAGCACCAGTGAGTTGGTCCACAGTGAGGTCTGCCTGCTCAGCGCCCTGGCTGCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CCA 72 bp GCAGCGGCTCTCCCAGCACGGCCTCCAGCTGCTGGATaGTCTTCTGGCACTGATGCTCCACTTCTTCACACT +
Preference number: 6 (lower is better)
Translates to: AAALPARPPAAG*SSGTDAPLLHT
Trigger: AGTGTGAAGAAGTGGAGCATCAGTGCCAGAAGACCATCCAGCAGCTGGAGGCCGTGCTGGGAGAGCCGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS GCA 72 bp TGTGCTGAACAACAGAGGCCACCAGATGGGGAAGCATaGAGCGCAGGAGAGGGCTCACATCGTAGCTCTCGG +
Preference number: 6 (lower is better)
Translates to: CAEQQRPPDGEA*SAGEGSHRSSR
Trigger: CCGAGAGCTACGATGTGAGCCCTCTCCTGCGCTGCATGCTTCCCCATCTGGTGGCCTCTGTTGTTCAGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CAA 90 bp CCTCCAGGCCAGTGCATCCGATGGCAAAGGCGGTGTCCCTGTCGATaGTGGCCGCCTCCTTGGGGTCAAATAACAGAGAGGCAACTTCAC +
Preference number: 6 (lower is better)
Translates to: PPGQCIRWQRRCPCR*WPPPWGQITERQLH
Trigger: GTGAAGTTGCCTCTCTGTTATTTGACCCCAAGGAGGCGGCCACAATCGACAGGGACACCGCCTTTGCCATCGGATGCACTGGCCTGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 72 bp TGGAGGCATAGAAGGCCAAGAGCACTCTCAACCGGGTaGAGCTTCCAGGATCCTCAGCGAAGGCCTTCACAG +
Preference number: 6 (lower is better)
Translates to: WRHRRPRALSTG*SFQDPQRRPSQ
Trigger: CTGTGAAGGCCTTCGCTGAGGATCCTGGAAGCTCCACCCGGTTGAGAGTGCTCTTGGCCTTCTATGCCTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 72 bp ACCAGCTCAAACTTTGAGGGTACCCCTCTGAGGGCCTaGAGACACTGGACGGCAGCTCTGCGGACTTCTTTG +
Preference number: 6 (lower is better)
Translates to: TSSNFEGTPLRA*RHWTAALRTSL
Trigger: CAAAGAAGTCCGCAGAGCTGCCGTCCAGTGTCTCCAGGCCCTCAGAGGGGTACCCTCAAAGTTTGAGCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CAA 72 bp CAGTGCATCCGATGGCAAAGGCGGTGTCCCTGTCGATaGTGGCCGCCTCCTTGGGGTCAAATAACAGAGAGG +
Preference number: 6 (lower is better)
Translates to: QCIRWQRRCPCR*WPPPWGQITER
Trigger: CCTCTCTGTTATTTGACCCCAAGGAGGCGGCCACAATCGACAGGGACACCGCCTTTGCCATCGGATGCACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CAA 72 bp AGATCCAGCGCCTTCCGACGCACAGACGGCAGGGGGTaGCCCACCAGCCCTCTAATCACAGAGATGAATGTT +
Preference number: 6 (lower is better)
Translates to: RSSAFRRTDGRG*PTSPLITEMNV
Trigger: AACATTCATCTCTGTGATTAGAGGGCTGGTGGGCAACCCCCTGCCGTCTGTGCGTCGGAAGGCGCTGGATCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CAA 90 bp CATCCGATGGCAAAGGCGGTGTCCCTGTCGATTGTGGCCGCCTCCTaGGGGTCAAATAACAGAGAGGCAACTTCACGTCTCGATAGGAGG +
Preference number: 6 (lower is better)
Translates to: HPMAKAVSLSIVAAS*GSNNREATSRLDRR
Trigger: CCTCCTATCGAGACGTGAAGTTGCCTCTCTGTTATTTGACCCCAAGGAGGCGGCCACAATCGACAGGGACACCGCCTTTGCCATCGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 72 bp CAAAGGCGGTGTCCCTGTCGATTGTGGCCGCCTCCTTaGGGTCAAATAACAGAGAGGCAACTTCACGTCTCG +
Preference number: 6 (lower is better)
Translates to: QRRCPCRLWPPP*GQITERQLHVS
Trigger: CGAGACGTGAAGTTGCCTCTCTGTTATTTGACCCCAAGGAGGCGGCCACAATCGACAGGGACACCGCCTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 72 bp TGCATCCGATGGCAAAGGCGGTGTCCCTGTCGATTGTaGCCGCCTCCTTGGGGTCAAATAACAGAGAGGCAA +
Preference number: 6 (lower is better)
Translates to: CIRWQRRCPCRL*PPPWGQITERQ
Trigger: TTGCCTCTCTGTTATTTGACCCCAAGGAGGCGGCCACAATCGACAGGGACACCGCCTTTGCCATCGGATGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CAA 72 bp GCAAAGGCGGTGTCCCTGTCGATTGTGGCCGCCTCCTaGGGGTCAAATAACAGAGAGGCAACTTCACGTCTC +
Preference number: 6 (lower is better)
Translates to: AKAVSLSIVAAS*GSNNREATSRL
Trigger: GAGACGTGAAGTTGCCTCTCTGTTATTTGACCCCAAGGAGGCGGCCACAATCGACAGGGACACCGCCTTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CAA 90 bp CCTCTGAGGGCCTGGAGACACTGGACGGCAGCTCTGCGGACTTCTTaGATATGGCTTCCCAGATTGAGGAGTAGAGACATCACCACTGGA +
Preference number: 6 (lower is better)
Translates to: PLRAWRHWTAALRTS*IWLPRLRSRDITTG
Trigger: TCCAGTGGTGATGTCTCTACTCCTCAATCTGGGAAGCCATATCAAAGAAGTCCGCAGAGCTGCCGTCCAGTGTCTCCAGGCCCTCAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 72 bp TCTGGACGCTGCGCTCCAAGCCTTTTGCCAGCTGGCTaGACAATGGCGCTTCAAACTGTTCAAAGGCAGGGT +
Preference number: 6 (lower is better)
Translates to: SGRCAPSLLPAG*TMALQTVQRQG
Trigger: ACCCTGCCTTTGAACAGTTTGAAGCGCCATTGTTCAGCCAGCTGGCAAAAGGCTTGGAGCGCAGCGTCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS GCA 72 bp CACTGCTTTGGTCTGGACGCTGCGCTCCAAGCCTTTTaGCAGCTGGCTGAACAATGGCGCTTCAAACTGTTC +
Preference number: 6 (lower is better)
Translates to: HCFGLDAALQAF*QLAEQWRFKLF
Trigger: GAACAGTTTGAAGCGCCATTGTTCAGCCAGCTGGCAAAAGGCTTGGAGCGCAGCGTCCAGACCAAAGCAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 72 bp ATAACAGAGAGGCAACTTCACGTCTCGATAGGAGGCTaGGATCAGTTTGAGGGAGGGCGAGTCGCTGGAGCT +
Preference number: 6 (lower is better)
Translates to: ITERQLHVSIGG*DQFEGGRVAGA
Trigger: AGCTCCAGCGACTCGCCCTCCCTCAAACTGATCCCAGCCTCCTATCGAGACGTGAAGTTGCCTCTCTGTTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 72 bp GCTGCGCTCCAAGCCTTTTGCCAGCTGGCTGAACAATaGCGCTTCAAACTGTTCAAAGGCAGGGTCAATCCC +
Preference number: 6 (lower is better)
Translates to: AALQAFCQLAEQ*RFKLFKGRVNP
Trigger: GGGATTGACCCTGCCTTTGAACAGTTTGAAGCGCCATTGTTCAGCCAGCTGGCAAAAGGCTTGGAGCGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 72 bp ATAGGTTCTCAGCGGCCACTAGAGCAGACACAATGGTaGAGGCATAGAAGGCCAAGAGCACTCTCAACCGGG +
Preference number: 6 (lower is better)
Translates to: IGSQRPLEQTQW*RHRRPRALSTG
Trigger: CCCGGTTGAGAGTGCTCTTGGCCTTCTATGCCTCCACCATTGTGTCTGCTCTAGTGGCCGCTGAGAACCTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CAA 90 bp TTATTCAAAAGATCCAGCGCCTTCCGACGCACAGACGGCAGGGGGTaGCCCACCAGCCCTCTAATCACAGAGATGAATGTTTCTGTGGGC +
Preference number: 6 (lower is better)
Translates to: LFKRSSAFRRTDGRG*PTSPLITEMNVSVG
Trigger: GCCCACAGAAACATTCATCTCTGTGATTAGAGGGCTGGTGGGCAACCCCCTGCCGTCTGTGCGTCGGAAGGCGCTGGATCTTTTGAATAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS TCA 72 bp GCGATGCAGGGCACCAGGTACTTGGTTACCCGTTCCTaGAACCTTTCTTCTCCTCCAAGCCTGTTTTCCAGC +
Preference number: 6 (lower is better)
Translates to: AMQGTRYLVTRS*NLSSPPSLFSS
Trigger: GCTGGAAAACAGGCTTGGAGGAGAAGAAAGGTTTCAGGAACGGGTAACCAAGTACCTGGTGCCCTGCATCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS GCA 72 bp TCCTCCGGCAATCCTCTGTTCAACATCAGTTCCAGGTaGCACTCTGAGGGGATTTCCACAGCAGTGATGACG +
Preference number: 6 (lower is better)
Translates to: SSGNPLFNISSR*HSEGISTAVMT
Trigger: CGTCATCACTGCTGTGGAAATCCCCTCAGAGTGGCACCTGGAACTGATGTTGAACAGAGGATTGCCGGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CCA 72 bp TTGGTCTGGACGCTGCGCTCCAAGCCTTTTGCCAGCTaGCTGAACAATGGCGCTTCAAACTGTTCAAAGGCA +
Preference number: 6 (lower is better)
Translates to: LVWTLRSKPFAS*LNNGASNCSKA
Trigger: TGCCTTTGAACAGTTTGAAGCGCCATTGTTCAGCCAGCTGGCAAAAGGCTTGGAGCGCAGCGTCCAGACCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 72 bp ATGTTTTCATCCAGCTGCTTGTTCACTGCTTTGGTCTaGACGCTGCGCTCCAAGCCTTTTGCCAGCTGGCTG +
Preference number: 6 (lower is better)
Translates to: MFSSSCLFTALV*TLRSKPFASWL
Trigger: CAGCCAGCTGGCAAAAGGCTTGGAGCGCAGCGTCCAGACCAAAGCAGTGAACAAGCAGCTGGATGAAAACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 72 bp CTGATAGGTTCTCAGCGGCCACTAGAGCAGACACAATaGTGGAGGCATAGAAGGCCAAGAGCACTCTCAACC +
Preference number: 6 (lower is better)
Translates to: LIGSQRPLEQTQ*WRHRRPRALST
Trigger: GGTTGAGAGTGCTCTTGGCCTTCTATGCCTCCACCATTGTGTCTGCTCTAGTGGCCGCTGAGAACCTATCAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CAA 72 bp GCCTGGAGACACTGGACGGCAGCTCTGCGGACTTCTTaGATATGGCTTCCCAGATTGAGGAGTAGAGACATC +
Preference number: 6 (lower is better)
Translates to: AWRHWTAALRTS*IWLPRLRSRDI
Trigger: GATGTCTCTACTCCTCAATCTGGGAAGCCATATCAAAGAAGTCCGCAGAGCTGCCGTCCAGTGTCTCCAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CAA 72 bp GGTATGAAAGGCTCTCGGTTCTGTGCCCCGAAGTTCTaGCACAGGAGTTTCAGGGTGTACAGCGCTGTCTGT +
Preference number: 6 (lower is better)
Translates to: GMKGSRFCAPKF*HRSFRVYSAVC
Trigger: ACAGACAGCGCTGTACACCCTGAAACTCCTGTGCAAGAACTTCGGGGCACAGAACCGAGAGCCTTTCATACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CAA 90 bp CACTGGACGGCAGCTCTGCGGACTTCTTTGATATGGCTTCCCAGATaGAGGAGTAGAGACATCACCACTGGAGATGCAGTAGATGCCAGC +
Preference number: 6 (lower is better)
Translates to: HWTAALRTSLIWLPR*RSRDITTGDAVDAS
Trigger: GCTGGCATCTACTGCATCTCCAGTGGTGATGTCTCTACTCCTCAATCTGGGAAGCCATATCAAAGAAGTCCGCAGAGCTGCCGTCCAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CAA 90 bp AAGCGGTGGACCATTTTCTTCCTCCAGAATGTGTGCTGCTGGAGCTaGTTATTCAAAAGATCCAGCGCCTTCCGACGCACAGACGGCAGG +
Preference number: 6 (lower is better)
Translates to: KRWTIFFLQNVCCWS*LFKRSSAFRRTDGR
Trigger: CCTGCCGTCTGTGCGTCGGAAGGCGCTGGATCTTTTGAATAACAAGCTCCAGCAGCACACATTCTGGAGGAAGAAAATGGTCCACCGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS TCA 72 bp CCATCAATCCCTTCAGCTTCTTCTCCTGCAATGTGCTaGACAACAGAGGCCACCAGATGGGGAAGCATGCAG +
Preference number: 6 (lower is better)
Translates to: PSIPSASSPAMC*TTEATRWGSMQ
Trigger: CTGCATGCTTCCCCATCTGGTGGCCTCTGTTGTTCAGCACATTGCAGGAGAAGAAGCTGAAGGGATTGATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 72 bp CTGGACAGCAAGTTGAAGAGGGGTGGGATCAGTATCTaGGGGCACTTGAGCTTCTTCTTGTGCTGCAGCAAC +
Preference number: 6 (lower is better)
Translates to: LDSKLKRGGISI*GHLSFFLCCSN
Trigger: GTTGCTGCAGCACAAGAAGAAGCTCAAGTGCCCTCAGATACTGATCCCACCCCTCTTCAACTTGCTGTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CCA 72 bp ACCTTCTCTAGGAGTTGTTCCACCATAGGCAGCAGCTaGGCAAGCACCATCTCACTGTTCACACCTTGGAGT +
Preference number: 6 (lower is better)
Translates to: TFSRSCSTIGSS*ASTISLFTPWS
Trigger: ACTCCAAGGTGTGAACAGTGAGATGGTGCTTGCCCAGCTGCTGCCTATGGTGGAACAACTCCTAGAGAAGGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CAA 90 bp AGGAGGAACGATGAAATGTTTTCATCCAGCTGCTTGTTCACTGCTTaGGTCTGGACGCTGCGCTCCAAGCCTTTTGCCAGCTGGCTGAAC +
Preference number: 6 (lower is better)
Translates to: RRNDEMFSSSCLFTA*VWTLRSKPFASWLN
Trigger: GTTCAGCCAGCTGGCAAAAGGCTTGGAGCGCAGCGTCCAGACCAAAGCAGTGAACAAGCAGCTGGATGAAAACATTTCATCGTTCCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CAA 90 bp TGCGGCATCTCCGAGAGGCGGATGCACTGCACTATCAGCTCCACGTaGAACTTCTCCTCATCCACAACATCTTTAGGTATTCTGCCACCA +
Preference number: 6 (lower is better)
Translates to: CGISERRMHCTISST*NFSSSTTSLGILPP
Trigger: TGGTGGCAGAATACCTAAAGATGTTGTGGATGAGGAGAAGTTCAACGTGGAGCTGATAGTGCAGTGCATCCGCCTCTCGGAGATGCCGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CAA 90 bp CACCATAGGCAGCAGCTGGGCAAGCACCATCTCACTGTTCACACCTaGGAGTACTTTCATCAAGCCTTTTGCAATGTAAGATGGGCAGCC +
Preference number: 6 (lower is better)
Translates to: HHRQQLGKHHLTVHT*EYFHQAFCNVRWAA
Trigger: GGCTGCCCATCTTACATTGCAAAAGGCTTGATGAAAGTACTCCAAGGTGTGAACAGTGAGATGGTGCTTGCCCAGCTGCTGCCTATGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 72 bp GTAGATCTGACCATCAATCCCTTCAGCTTCTTCTCCTaGAATGTGCTGAACAACAGAGGCCACCAGATGGGG +
Preference number: 6 (lower is better)
Translates to: VDLTINPFSFFS*NVLNNRGHQMG
Trigger: CCCCATCTGGTGGCCTCTGTTGTTCAGCACATTGCAGGAGAAGAAGCTGAAGGGATTGATGGTCAGATCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 72 bp AGCTCCTGCTTTTTAAGGCCTGTGATCTCCTTCAGGTaGTCCTCTAACACAGCATCCAACGCTCTGGGGTAT +
Preference number: 6 (lower is better)
Translates to: SSCFLRPVISFR*SSNTASNALGY
Trigger: ATACCCCAGAGCGTTGGATGCTGTGTTAGAGGAGCACCTGAAGGAGATCACAGGCCTTAAAAAGCAGGAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 72 bp AGTGCTGAGAACTGGTATGAAAGGCTCTCGGTTCTGTaGCCCGAAGTTCTTGCACAGGAGTTTCAGGGTGTA +
Preference number: 6 (lower is better)
Translates to: SAENWYERLSVL*PEVLAQEFQGV
Trigger: TACACCCTGAAACTCCTGTGCAAGAACTTCGGGGCACAGAACCGAGAGCCTTTCATACCAGTTCTCAGCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS GCA 72 bp TTCCAGCTGATCCACCAGGGGCATCATCAGGGCTTCTaGTCTCTCCCTACTCATGAAATTCTGGGTGTCAAA +
Preference number: 6 (lower is better)
Translates to: FQLIHQGHHQGF*SLPTHEILGVK
Trigger: TTTGACACCCAGAATTTCATGAGTAGGGAGAGAGCAGAAGCCCTGATGATGCCCCTGGTGGATCAGCTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CCA 72 bp AGACACTGGACGGCAGCTCTGCGGACTTCTTTGATATaGCTTCCCAGATTGAGGAGTAGAGACATCACCACT +
Preference number: 6 (lower is better)
Translates to: RHWTAALRTSLI*LPRLRSRDITT
Trigger: AGTGGTGATGTCTCTACTCCTCAATCTGGGAAGCCATATCAAAGAAGTCCGCAGAGCTGCCGTCCAGTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CAA 72 bp GATGAAATGTTTTCATCCAGCTGCTTGTTCACTGCTTaGGTCTGGACGCTGCGCTCCAAGCCTTTTGCCAGC +
Preference number: 6 (lower is better)
Translates to: DEMFSSSCLFTA*VWTLRSKPFAS
Trigger: GCTGGCAAAAGGCTTGGAGCGCAGCGTCCAGACCAAAGCAGTGAACAAGCAGCTGGATGAAAACATTTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CAA 72 bp TTGCTGAGCAGCGCTCGCCAAAACTTCCCAGTCAGTTaGTCTGCATTCTTTTCCATGGACTGTGCTACCGTG +
Preference number: 6 (lower is better)
Translates to: LLSSARQNFPVS*SAFFSMDCATV
Trigger: CACGGTAGCACAGTCCATGGAAAAGAATGCAGACAAACTGACTGGGAAGTTTTGGCGAGCGCTGCTCAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CAA 72 bp AATGTCAACAGCCTGTCCTTCGGCGCATCTTCTGTCTaGGCCCAATCAAACAGCTTGAAGAAGAGAGGCCTG +
Preference number: 6 (lower is better)
Translates to: NVNSLSFGASSV*AQSNSLKKRGL
Trigger: CAGGCCTCTCTTCTTCAAGCTGTTTGATTGGGCCAAGACAGAAGATGCGCCGAAGGACAGGCTGTTGACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CAA 90 bp CTGAGAACTGGTATGAAAGGCTCTCGGTTCTGTGCCCCGAAGTTCTaGCACAGGAGTTTCAGGGTGTACAGCGCTGTCTGTCTGTTAATT +
Preference number: 6 (lower is better)
Translates to: LRTGMKGSRFCAPKF*HRSFRVYSAVCLLI
Trigger: AATTAACAGACAGACAGCGCTGTACACCCTGAAACTCCTGTGCAAGAACTTCGGGGCACAGAACCGAGAGCCTTTCATACCAGTTCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS TCA 72 bp ATTTCATGGAAAATACAAGTAAAATGGCGTCCTCCATaGCAACCCTCTGGGCACCGTGGAGCTCCTGCACGT +
Preference number: 6 (lower is better)
Translates to: ISWKIQVKWRPP*QPSGHRGAPAR
Trigger: ACGTGCAGGAGCTCCACGGTGCCCAGAGGGTTGTCATGGAGGACGCCATTTTACTTGTATTTTCCATGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 72 bp CTCGTAGAGAGAGAAATGAACTGGTGGAACAGCTCCTaGTTTTTAAGGCCTGTGATCTCCTTCAGGTGCTCC +
Preference number: 6 (lower is better)
Translates to: LVEREMNWWNSS*FLRPVISFRCS
Trigger: GGAGCACCTGAAGGAGATCACAGGCCTTAAAAAGCAGGAGCTGTTCCACCAGTTCATTTCTCTCTCTACGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CCA 72 bp ATGAAATGTTTTCATCCAGCTGCTTGTTCACTGCTTTaGTCTGGACGCTGCGCTCCAAGCCTTTTGCCAGCT +
Preference number: 6 (lower is better)
Translates to: MKCFHPAACSLL*SGRCAPSLLPA
Trigger: AGCTGGCAAAAGGCTTGGAGCGCAGCGTCCAGACCAAAGCAGTGAACAAGCAGCTGGATGAAAACATTTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 72 bp GATGCAAAACAACAGCCTCATCTTTCAGGACAGCTGTaGGCTCCTTCTCCACCTTCTCTAGGAGTTGTTCCA +
Preference number: 6 (lower is better)
Translates to: DAKQQPHLSGQL*APSPPSLGVVP
Trigger: TGGAACAACTCCTAGAGAAGGTGGAGAAGGAGCCCACAGCTGTCCTGAAAGATGAGGCTGTTGTTTTGCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CCA 72 bp TCTTCAGCAAAATCTGGTAGTTCAGGGGTTTCCACATaGAGTCATCTGCCATGGCCACAGAGAACTGTGCGA +
Preference number: 6 (lower is better)
Translates to: SSAKSGSSGVST*SHLPWPQRTVR
Trigger: TCGCACAGTTCTCTGTGGCCATGGCAGATGACTCCATGTGGAAACCCCTGAACTACCAGATTTTGCTGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CAA 72 bp GCAGCTCTGCGGACTTCTTTGATATGGCTTCCCAGATaGAGGAGTAGAGACATCACCACTGGAGATGCAGTA +
Preference number: 6 (lower is better)
Translates to: AALRTSLIWLPR*RSRDITTGDAV
Trigger: TACTGCATCTCCAGTGGTGATGTCTCTACTCCTCAATCTGGGAAGCCATATCAAAGAAGTCCGCAGAGCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 72 bp GCGTCTGAAGTGATCTCTTCTGCCTTAGGAATGAGGTaGTCTATCACCAGCTCAAACTTTGAGGGTACCCCT +
Preference number: 6 (lower is better)
Translates to: ASEVISSALGMR*SITSSNFEGTP
Trigger: AGGGGTACCCTCAAAGTTTGAGCTGGTGATAGATCACCTCATTCCTAAGGCAGAAGAGATCACTTCAGACGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 72 bp CTGAGAGCTTCACCACCATGGCCACTAGACAGTCAATaGTCCAACCTTCCGTTTTCCCAACTTCCTCTAGAT +
Preference number: 6 (lower is better)
Translates to: LRASPPWPLDSQ*SNLPFSQLPLD
Trigger: ATCTAGAGGAAGTTGGGAAAACGGAAGGTTGGATCATTGACTGTCTAGTGGCCATGGTGGTGAAGCTCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS GCA 72 bp AAACACTGCCGACCGTCTGAACACAGTGTGCGTCTTTaGAGTTCACTAACAAGTCAAACAGCACACACAGGA +
Preference number: 6 (lower is better)
Translates to: KHCRPSEHSVRL*SSLTSQTAHTG
Trigger: TCCTGTGTGTGCTGTTTGACTTGTTAGTGAACTGCAAAGACGCACACTGTGTTCAGACGGTCGGCAGTGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 72 bp GAGCAGCGCTCGCCAAAACTTCCCAGTCAGTTTGTCTaGATTCTTTTCCATGGACTGTGCTACCGTGTTAAT +
Preference number: 6 (lower is better)
Translates to: EQRSPKLPSQFV*ILFHGLCYRVN
Trigger: ATTAACACGGTAGCACAGTCCATGGAAAAGAATGCAGACAAACTGACTGGGAAGTTTTGGCGAGCGCTGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS GCA 72 bp AGAAAGCGGTGGACCATTTTCTTCCTCCAGAATGTGTaGTGCTGGAGCTTGTTATTCAAAAGATCCAGCGCC +
Preference number: 6 (lower is better)
Translates to: RKRWTIFFLQNV*CWSLLFKRSSA
Trigger: GGCGCTGGATCTTTTGAATAACAAGCTCCAGCAGCACACATTCTGGAGGAAGAAAATGGTCCACCGCTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CCA 72 bp AGAAGCTGTATCACCCGCACAAATACCCGTGTCTCATaGTACGGCAGAACACAAGCAATGAGACTATCTGCA +
Preference number: 6 (lower is better)
Translates to: RSCITRTNTRVS*YGRTQAMRLSA
Trigger: TGCAGATAGTCTCATTGCTTGTGTTCTGCCGTACCATGAGACACGGGTATTTGTGCGGGTGATACAGCTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 72 bp TACTTGCCTCCACTCGTAGAGAGAGAAATGAACTGGTaGAACAGCTCCTGCTTTTTAAGGCCTGTGATCTCC +
Preference number: 6 (lower is better)
Translates to: YLPPLVEREMNW*NSSCFLRPVIS
Trigger: GGAGATCACAGGCCTTAAAAAGCAGGAGCTGTTCCACCAGTTCATTTCTCTCTCTACGAGTGGAGGCAAGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CCA 72 bp CTGAACACTCTTAGAGCAAACGGGAAGCAGGTTTCTTaGAAGGATGAGCAGCAAGAGATCAGCACAGACACA +
Preference number: 6 (lower is better)
Translates to: LNTLRANGKQVS*KDEQQEISTDT
Trigger: TGTGTCTGTGCTGATCTCTTGCTGCTCATCCTTCCAAGAAACCTGCTTCCCGTTTGCTCTAAGAGTGTTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CAA 72 bp CCCTTTTGGATGTATGGAAAGAGTTTGGCGACTACATaGTCTGATAGGTTCTCAGCGGCCACTAGAGCAGAC +
Preference number: 6 (lower is better)
Translates to: PFWMYGKSLATT*SDRFSAATRAD
Trigger: GTCTGCTCTAGTGGCCGCTGAGAACCTATCAGACAATGTAGTCGCCAAACTCTTTCCATACATCCAAAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CAA 72 bp TCCGAGAGGCGGATGCACTGCACTATCAGCTCCACGTaGAACTTCTCCTCATCCACAACATCTTTAGGTATT +
Preference number: 6 (lower is better)
Translates to: SERRMHCTISST*NFSSSTTSLGI
Trigger: AATACCTAAAGATGTTGTGGATGAGGAGAAGTTCAACGTGGAGCTGATAGTGCAGTGCATCCGCCTCTCGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CAA 90 bp TCCCTTTTCTTATGTTGCACAATGGCCAGAAGGACTGGAACCAGTTaGAGAAAGCGGTGGACCATTTTCTTCCTCCAGAATGTGTGCTGC +
Preference number: 6 (lower is better)
Translates to: SLFLCCTMARRTGTS*RKRWTIFFLQNVCC
Trigger: GCAGCACACATTCTGGAGGAAGAAAATGGTCCACCGCTTTCTCAAACTGGTTCCAGTCCTTCTGGCCATTGTGCAACATAAGAAAAGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CAA 90 bp GCACCATCTCACTGTTCACACCTTGGAGTACTTTCATCAAGCCTTTaGCAATGTAAGATGGGCAGCCATACACACAGTGAAGAAGGCTTC +
Preference number: 6 (lower is better)
Translates to: APSHCSHLGVLSSSL*QCKMGSHTHSEEGF
Trigger: GAAGCCTTCTTCACTGTGTGTATGGCTGCCCATCTTACATTGCAAAAGGCTTGATGAAAGTACTCCAAGGTGTGAACAGTGAGATGGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 72 bp TCGAGAGCAGTGATCCGAACAGTTGGCATTCCTGGGTaGAGCTCCTTTGTTGTGTGCATAGCTTTTATGAAC +
Preference number: 6 (lower is better)
Translates to: SRAVIRTVGIPG*SSFVVCIAFMN
Trigger: GTTCATAAAAGCTATGCACACAACAAAGGAGCTTCACCCAGGAATGCCAACTGTTCGGATCACTGCTCTCGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 72 bp TCGACAGAAATCCCCTTAAAAACACTGCCGACCGTCTaGACACAGTGTGCGTCTTTGCAGTTCACTAACAAG +
Preference number: 6 (lower is better)
Translates to: STEIPLKTLPTV*TQCASLQFTNK
Trigger: CTTGTTAGTGAACTGCAAAGACGCACACTGTGTTCAGACGGTCGGCAGTGTTTTTAAGGGGATTTCTGTCGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 72 bp CTCAGAATTAACTGCTTAGTGTACTCCATGTTCCCCTaGTCTGATGACAAAGGCTCTAAACACCTGGACAGC +
Preference number: 6 (lower is better)
Translates to: LRINCLVYSMFP*SDDKGSKHLDS
Trigger: GCTGTCCAGGTGTTTAGAGCCTTTGTCATCAGAGCAGGGGAACATGGAGTACACTAAGCAGTTAATTCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 72 bp CAGAACAATGTAATTCTCTCTCAGCTTCTCAGCCAGTaGCAAGACAGTAATCAAGGCTGCAAACCGCACCTT +
Preference number: 6 (lower is better)
Translates to: QNNVILSQLLSQ*QDSNQGCKPHL
Trigger: AAGGTGCGGTTTGCAGCCTTGATTACTGTCTTGGCACTGGCTGAGAAGCTGAGAGAGAATTACATTGTTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CAA 72 bp CAGCAGCTGGGCAAGCACCATCTCACTGTTCACACCTaGGAGTACTTTCATCAAGCCTTTTGCAATGTAAGA +
Preference number: 6 (lower is better)
Translates to: QQLGKHHLTVHT*EYFHQAFCNVR
Trigger: TCTTACATTGCAAAAGGCTTGATGAAAGTACTCCAAGGTGTGAACAGTGAGATGGTGCTTGCCCAGCTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CAA 90 bp GATTTCAATCCCTTTTGGATGTATGGAAAGAGTTTGGCGACTACATaGTCTGATAGGTTCTCAGCGGCCACTAGAGCAGACACAATGGTG +
Preference number: 6 (lower is better)
Translates to: DFNPFWMYGKSLATT*SDRFSAATRADTMV
Trigger: CACCATTGTGTCTGCTCTAGTGGCCGCTGAGAACCTATCAGACAATGTAGTCGCCAAACTCTTTCCATACATCCAAAAGGGATTGAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CAA 90 bp TCCTTCAGGTGCTCCTCTAACACAGCATCCAACGCTCTGGGGTATTaGCTTTCTAAAAGTCTGATGAGTGGAAGAAACTGCTCATTAAGC +
Preference number: 6 (lower is better)
Translates to: SFRCSSNTASNALGY*LSKSLMSGRNCSLS
Trigger: GCTTAATGAGCAGTTTCTTCCACTCATCAGACTTTTAGAAAGCAAATACCCCAGAGCGTTGGATGCTGTGTTAGAGGAGCACCTGAAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 72 bp ATACCCGTGTCTCATGGTACGGCAGAACACAAGCAATaGGACTATCTGCATTGTAAAGATGGATGTGGAACC +
Preference number: 6 (lower is better)
Translates to: IPVSHGTAEHKQ*DYLHCKDGCGT
Trigger: GGTTCCACATCCATCTTTACAATGCAGATAGTCTCATTGCTTGTGTTCTGCCGTACCATGAGACACGGGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS TCA 72 bp AGGGCCCTCCACTTCTTGGACAGACTCTACATCTTGTaGCTTTTTCTGTTGCATTTTCTGCCTTCTCGTTTG +
Preference number: 6 (lower is better)
Translates to: RALHFLDRLYIL*LFLLHFLPSRL
Trigger: CAAACGAGAAGGCAGAAAATGCAACAGAAAAAGTCACAAGATGTAGAGTCTGTCCAAGAAGTGGAGGGCCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CCA 72 bp CTCCCTTTTCTTATGTTGCACAATGGCCAGAAGGACTaGAACCAGTTTGAGAAAGCGGTGGACCATTTTCTT +
Preference number: 6 (lower is better)
Translates to: LPFLMLHNGQKD*NQFEKAVDHFL
Trigger: AAGAAAATGGTCCACCGCTTTCTCAAACTGGTTCCAGTCCTTCTGGCCATTGTGCAACATAAGAAAAGGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CAA 72 bp GAGGATTTCAATCCCTTTTGGATGTATGGAAAGAGTTaGGCGACTACATTGTCTGATAGGTTCTCAGCGGCC +
Preference number: 6 (lower is better)
Translates to: EDFNPFWMYGKS*ATTLSDRFSAA
Trigger: GGCCGCTGAGAACCTATCAGACAATGTAGTCGCCAAACTCTTTCCATACATCCAAAAGGGATTGAAATCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CAA 90 bp TCTGGTAAAGAGGATTTCAATCCCTTTTGGATGTATGGAAAGAGTTaGGCGACTACATTGTCTGATAGGTTCTCAGCGGCCACTAGAGCA +
Preference number: 6 (lower is better)
Translates to: SGKEDFNPFWMYGKS*ATTLSDRFSAATRA
Trigger: TGCTCTAGTGGCCGCTGAGAACCTATCAGACAATGTAGTCGCCAAACTCTTTCCATACATCCAAAAGGGATTGAAATCCTCTTTACCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CAA 90 bp GCCCAAAGATTTAGCTTTATCTCGTGGCTCCAGTTCTATTCTGATTaGTTCAGCATCGACAGAAATCCCCTTAAAAACACTGCCGACCGT +
Preference number: 6 (lower is better)
Translates to: AQRFSFISWLQFYSD*FSIDRNPLKNTADR
Trigger: ACGGTCGGCAGTGTTTTTAAGGGGATTTCTGTCGATGCTGAACAAATCAGAATAGAACTGGAGCCACGAGATAAAGCTAAATCTTTGGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 72 bp AACCTTGGTCAGTGTTTTGATGAGCTGGGATGCCAGTaGCTTCACAAAGGTATCTTCCATCGTTACTTTCAC +
Preference number: 6 (lower is better)
Translates to: NLGQCFDELGCQ*LHKGIFHRYFH
Trigger: GTGAAAGTAACGATGGAAGATACCTTTGTGAAGTCACTGGCATCCCAGCTCATCAAAACACTGACCAAGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS TCA 72 bp CTGAGCATCAAAGAGGTGTCAGAATCCTCCAAAAACTaGTACTTGCCTCCACTCGTAGAGAGAGAAATGAAC +
Preference number: 6 (lower is better)
Translates to: LSIKEVSESSKN*YLPPLVEREMN
Trigger: GTTCATTTCTCTCTCTACGAGTGGAGGCAAGTATCAGTTTTTGGAGGATTCTGACACCTCTTTGATGCTCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 72 bp CTCATGGTACGGCAGAACACAAGCAATGAGACTATCTaGATTGTAAAGATGGATGTGGAACCTGTGAATCAG +
Preference number: 6 (lower is better)
Translates to: LMVRQNTSNETI*IVKMDVEPVNQ
Trigger: CTGATTCACAGGTTCCACATCCATCTTTACAATGCAGATAGTCTCATTGCTTGTGTTCTGCCGTACCATGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS GCA 72 bp GTGACCAAAGTTCCTCTAGCTAAAGGTACTCCAGAGTaGTTAACAGGAGACAGCCAAAACCATTTGTGTTTC +
Preference number: 6 (lower is better)
Translates to: VTKVPLAKGTPE*LTGDSQNHLCF
Trigger: GAAACACAAATGGTTTTGGCTGTCTCCTGTTAAGCACTCTGGAGTACCTTTAGCTAGAGGAACTTTGGTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CCA 72 bp TTGGAGTACTTTCATCAAGCCTTTTGCAATGTAAGATaGGCAGCCATACACACAGTGAAGAAGGCTTCTCAG +
Preference number: 6 (lower is better)
Translates to: LEYFHQAFCNVR*AAIHTVKKASQ
Trigger: CTGAGAAGCCTTCTTCACTGTGTGTATGGCTGCCCATCTTACATTGCAAAAGGCTTGATGAAAGTACTCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CAA 72 bp CACTGTTCACACCTTGGAGTACTTTCATCAAGCCTTTaGCAATGTAAGATGGGCAGCCATACACACAGTGAA +
Preference number: 6 (lower is better)
Translates to: HCSHLGVLSSSL*QCKMGSHTHSE
Trigger: TTCACTGTGTGTATGGCTGCCCATCTTACATTGCAAAAGGCTTGATGAAAGTACTCCAAGGTGTGAACAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CAA 90 bp CTTGCTTGTGTGAGCGTCCACCTTAAAAACTGGCAACATTTCATCTaGTACTTCACTCTTAGTAGATACTGTCTTGGAGGTGGCTTCTTC +
Preference number: 6 (lower is better)
Translates to: LACVSVHLKNWQHFI*YFTLSRYCLGGGFF
Trigger: GAAGAAGCCACCTCCAAGACAGTATCTACTAAGAGTGAAGTACAAGATGAAATGTTGCCAGTTTTTAAGGTGGACGCTCACACAAGCAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS TCA 72 bp AAGAGAATTATCAGGCAACCTAATCCATCATTGACCTaGGAAGGAACCTTGGTCAGTGTTTTGATGAGCTGG +
Preference number: 6 (lower is better)
Translates to: KRIIRQPNPSLT*EGTLVSVLMSW
Trigger: CCAGCTCATCAAAACACTGACCAAGGTTCCTTCTCAGGTCAATGATGGATTAGGTTGCCTGATAATTCTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 72 bp TGTACCTTCATTATAAGCCTAATCAGAACCCTGAAATaGATGGCATCAGAAACCTCCAGCAGCATCTCAAAG +
Preference number: 6 (lower is better)
Translates to: CTFIISLIRTLK*MASETSSSISK
Trigger: CTTTGAGATGCTGCTGGAGGTTTCTGATGCCATGCATTTCAGGGTTCTGATTAGGCTTATAATGAAGGTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS GCA 72 bp TTTTGGCAGATGTTGAGCAAACAACTCAGAATTAACTaGTTAGTGTACTCCATGTTCCCCTGCTCTGATGAC +
Preference number: 6 (lower is better)
Translates to: FWQMLSKQLRIN*LVYSMFPCSDD
Trigger: GTCATCAGAGCAGGGGAACATGGAGTACACTAAGCAGTTAATTCTGAGTTGTTTGCTCAACATCTGCCAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CAA 90 bp GCTAAAGGTACTCCAGAGTGCTTAACAGGAGACAGCCAAAACCATTaGTGTTTCGGATTACTAATTTTTAGAAGCTGTATCACCCGCACA +
Preference number: 6 (lower is better)
Translates to: AKGTPECLTGDSQNH*CFGLLIFRSCITRT
Trigger: TGTGCGGGTGATACAGCTTCTAAAAATTAGTAATCCGAAACACAAATGGTTTTGGCTGTCTCCTGTTAAGCACTCTGGAGTACCTTTAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS TCA 72 bp GACAAATACTTAAAATGCCGAAGCTGCTTGCTTGTGTaGGCGTCCACCTTAAAAACTGGCAACATTTCATCT +
Preference number: 6 (lower is better)
Translates to: DKYLKCRSCLLV*ASTLKTGNISS
Trigger: AGATGAAATGTTGCCAGTTTTTAAGGTGGACGCTCACACAAGCAAGCAGCTTCGGCATTTTAAGTATTTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CAA 72 bp ATTTCATCTTGTACTTCACTCTTAGTAGATACTGTCTaGGAGGTGGCTTCTTCCTTTTCCTCTGGCAGCTTT +
Preference number: 6 (lower is better)
Translates to: ISSCTSLLVDTV*EVASSFSSGSF
Trigger: AAAGCTGCCAGAGGAAAAGGAAGAAGCCACCTCCAAGACAGTATCTACTAAGAGTGAAGTACAAGATGAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CAA 72 bp GTGAGCGTCCACCTTAAAAACTGGCAACATTTCATCTaGTACTTCACTCTTAGTAGATACTGTCTTGGAGGT +
Preference number: 6 (lower is better)
Translates to: VSVHLKNWQHFI*YFTLSRYCLGG
Trigger: ACCTCCAAGACAGTATCTACTAAGAGTGAAGTACAAGATGAAATGTTGCCAGTTTTTAAGGTGGACGCTCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CAA 72 bp GTCAAAGAAGGCTTCGTCTGTTTTGGAGATGTTTACTaGGTTCAAGGTATCAGCAAAAGGTTTCACCAAGTG +
Preference number: 6 (lower is better)
Translates to: VKEGFVCFGDVY*VQGISKRFHQV
Trigger: CACTTGGTGAAACCTTTTGCTGATACCTTGAACCAAGTAAACATCTCCAAAACAGACGAAGCCTTCTTTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000222091.2
CDS CAA 90 bp CCTCGTTCTTTGAAAGGTCTGCTCTTTGAAAGAGATTCAGAAGACTaGAAACCGTCTCTTCTACACCAAAGTGTTGTTGGAAAATCTCAA +
Preference number: 6 (lower is better)
Translates to: PRSLKGLLFERDSED*KPSLLHQSVVGKSQ
Trigger: TTGAGATTTTCCAACAACACTTTGGTGTAGAAGAGACGGTTTCAAGTCTTCTGAATCTCTTTCAAAGAGCAGACCTTTCAAAGAACGAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CAA 72 bp TTGAAAGGTCTGCTCTTTGAAAGAGATTCAGAAGACTaGAAACCGTCTCTTCTACACCAAAGTGTTGTTGGA +
Preference number: 6 (lower is better)
Translates to: LKGLLFERDSED*KPSLLHQSVVG
Trigger: TCCAACAACACTTTGGTGTAGAAGAGACGGTTTCAAGTCTTCTGAATCTCTTTCAAAGAGCAGACCTTTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS TCA 72 bp GTAATAACCATAAAAGGCAGCAACTGGACAACCACCTaGTTTGCCAACTGGTCATTTTTACTTAGTATCTCT +
Preference number: 6 (lower is better)
Translates to: VITIKGSNWTTT*FANWSFLLSIS
Trigger: AGAGATACTAAGTAAAAATGACCAGTTGGCAAATCAGGTGGTTGTCCAGTTGCTGCCTTTTATGGTTATTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10
CDS CAA 72 bp ACTCCAGAGTGCTTAACAGGAGACAGCCAAAACCATTaGTGTTTCGGATTACTAATTTTTAGAAGCTGTATC +
Preference number: 6 (lower is better)
Translates to: TPECLTGDSQNH*CFGLLIFRSCI
Trigger: GATACAGCTTCTAAAAATTAGTAATCCGAAACACAAATGGTTTTGGCTGTCTCCTGTTAAGCACTCTGGAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000059270.10
ENSMUST00000221046.2
CDS CAA 72 bp TTTAGCTTTATCTCGTGGCTCCAGTTCTATTCTGATTaGTTCAGCATCGACAGAAATCCCCTTAAAAACACT +
Preference number: 6 (lower is better)
Translates to: FSFISWLQFYSD*FSIDRNPLKNT
Trigger: AGTGTTTTTAAGGGGATTTCTGTCGATGCTGAACAAATCAGAATAGAACTGGAGCCACGAGATAAAGCTAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000059270.10