RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for HDLBP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034088

Ensembl transcript IDs: ENSMUST00000042498.14, ENSMUST00000170883.8, ENSMUST00000186164.7, ENSMUST00000186787.7, ENSMUST00000188988.7, ENSMUST00000189025.7

Found 571 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCCCAGAGCACAGCATCAGGAGCAGACCCTGAGCCTGCTGGGTGCTaGCCAGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGC +
Preference number: 1 (lower is better)
Translates to: SQSTASGADPEPAGC*PGLEKQPHKASPPG
Trigger: GCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCTGGTCAGCACCCAGCAGGCTCAGGGTCTGCTCCTGATGCTGTGCTCTGGGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
3UTR CCA 90 bp CAGCATCAGGAGCAGACCCTGAGCCTGCTGGGTGCTGACCAGGCCTaGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGA +
Preference number: 1 (lower is better)
Translates to: QHQEQTLSLLGADQA*RSSHTRPAHQALLR
Trigger: TCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCTGGTCAGCACCCAGCAGGCTCAGGGTCTGCTCCTGATGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
3UTR CCA 90 bp CTGGAAGGGAAGGAGGGAAGCAAGGTGTCCCCAGTCTCATGCAGATaGGAGAAGAGACGGCTCCAGGGAAAGGCAGGGAAGCGCTCTCCC +
Preference number: 1 (lower is better)
Translates to: LEGKEGSKVSPVSCR*EKRRLQGKAGKRSP
Trigger: GGGAGAGCGCTTCCCTGCCTTTCCCTGGAGCCGTCTCTTCTCCCATCTGCATGAGACTGGGGACACCTTGCTTCCCTCCTTCCCTTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR TCA 90 bp GGGAAGGAACACCCAGCTCTGGCCCAGTCCCTGAATCATGTGGACTaGGGGAAAGCACTGGCCTCCACCCTCAACTCAATGGCAAGCCCA +
Preference number: 1 (lower is better)
Translates to: GKEHPALAQSLNHVD*GKALASTLNSMASP
Trigger: TGGGCTTGCCATTGAGTTGAGGGTGGAGGCCAGTGCTTTCCCTCAGTCCACATGATTCAGGGACTGGGCCAGAGCTGGGTGTTCCTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CCA 90 bp AAGCATCCAGGTTATGCTTGCCAGAGCCTGCATGGTCAGGCTGGCTaGGAAGGAACACCCAGCTCTGGCCCAGTCCCTGAATCATGTGGA +
Preference number: 1 (lower is better)
Translates to: KHPGYACQSLHGQAG*EGTPSSGPVPESCG
Trigger: TCCACATGATTCAGGGACTGGGCCAGAGCTGGGTGTTCCTTCCCAGCCAGCCTGACCATGCAGGCTCTGGCAAGCATAACCTGGATGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CCA 90 bp TTAGGACTGCATAAAGCATCCAGGTTATGCTTGCCAGAGCCTGCATaGTCAGGCTGGCTGGGAAGGAACACCCAGCTCTGGCCCAGTCCC +
Preference number: 1 (lower is better)
Translates to: LGLHKASRLCLPEPA*SGWLGRNTQLWPSP
Trigger: GGGACTGGGCCAGAGCTGGGTGTTCCTTCCCAGCCAGCCTGACCATGCAGGCTCTGGCAAGCATAACCTGGATGCTTTATGCAGTCCTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR GCA 90 bp CTACATGCTGGGTGGACCAGGAAGCTGGAGTCTGTGATCACGAAATaGTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTC +
Preference number: 1 (lower is better)
Translates to: LHAGWTRKLESVITK*SITLLSVSHSGVPV
Trigger: GACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCGTGATCACAGACTCCAGCTTCCTGGTCCACCCAGCATGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
3UTR TCA 90 bp TATCCTGAAGCCTGTGCTAAGCAGATTTTGACAGCTAAAGGAAGCTaGCTGCTTTCAACAGAGGAAGGTCTGGGCGACAGGTGGTGGGCA +
Preference number: 1 (lower is better)
Translates to: YPEACAKQILTAKGS*LLSTEEGLGDRWWA
Trigger: TGCCCACCACCTGTCGCCCAGACCTTCCTCTGTTGAAAGCAGTCAGCTTCCTTTAGCTGTCAAAATCTGCTTAGCACAGGCTTCAGGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CCA 90 bp GCAAGCCCAGAATCACCAGAAATGTCTACATCACAAGAAGAGCCTTaGGTGGCACTAACCCACATGAGAGTACTACCACACTGGCTGAGG +
Preference number: 1 (lower is better)
Translates to: ASPESPEMSTSQEEP*VALTHMRVLPHWLR
Trigger: CCTCAGCCAGTGTGGTAGTACTCTCATGTGGGTTAGTGCCACCCAAGGCTCTTCTTGTGATGTAGACATTTCTGGTGATTCTGGGCTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR TCA 90 bp ATACCATGCCTTCCTCCTATCCTGAAGCCTGTGCTAAGCAGATTTTaGCAGCTAAAGGAAGCTGACTGCTTTCAACAGAGGAAGGTCTGG +
Preference number: 1 (lower is better)
Translates to: IPCLPPILKPVLSRF*QLKEADCFQQRKVW
Trigger: CCAGACCTTCCTCTGTTGAAAGCAGTCAGCTTCCTTTAGCTGTCAAAATCTGCTTAGCACAGGCTTCAGGATAGGAGGAAGGCATGGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CCA 90 bp TTTTCCCATCTCAGTATCGTTCTTCTAAGTGGGTACATGTGGGACTaGTTCCATCCAAAGGGAACTGAAGTTAGACTTGGGAAAGCAATT +
Preference number: 1 (lower is better)
Translates to: FSHLSIVLLSGYMWD*FHPKGTEVRLGKAI
Trigger: AATTGCTTTCCCAAGTCTAACTTCAGTTCCCTTTGGATGGAACCAGTCCCACATGTACCCACTTAGAAGAACGATACTGAGATGGGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CCA 90 bp ATGTTCTTTTCCCATCTCAGTATCGTTCTTCTAAGTGGGTACATGTaGGACTGGTTCCATCCAAAGGGAACTGAAGTTAGACTTGGGAAA +
Preference number: 1 (lower is better)
Translates to: MFFSHLSIVLLSGYM*DWFHPKGTEVRLGK
Trigger: TTTCCCAAGTCTAACTTCAGTTCCCTTTGGATGGAACCAGTCCCACATGTACCCACTTAGAAGAACGATACTGAGATGGGAAAAGAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR-3UTR CCA 90 bp AGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAACCATTGTGTGGTTaGGTTTGGGCAGCAGGCTGG +
Preference number: 2 (lower is better)
Translates to: SSHTRPAHQALLRDLGEGKPLCG*VWAAGW
Trigger: CCAGCCTGCTGCCCAAACCCAACCACACAATGGTTT...CCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
3UTR-3UTR CCA 90 bp AGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAGACAAACCATTGTGTaGTTGGGTTTGGGCAGCAGG +
Preference number: 2 (lower is better)
Translates to: SSHTRPAHQALLRDLGEGRQTIV*LGLGSR
Trigger: CCTGCTGCCCAAACCCAACCACACAATGGTTTGTCT...CCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
3UTR-3UTR CCA 90 bp GTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGGTGCTGACCAGGCCTaGAGAAGCAGCCACACAAGG +
Preference number: 2 (lower is better)
Translates to: VFHTVACLSQSTASGADPGADQA*RSSHTR
Trigger: CCTTGTGTGGCTGCTTCTCCAGGCCTGGTCAGCACC...AGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
3UTR-3UTR CCA 90 bp GGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGGTTTGGGCAGCAGGCTaGAAAGGTTTCTTTTTGATC +
Preference number: 2 (lower is better)
Translates to: GEAATQGQPTRLCCETSGVWAAG*KGFFLI
Trigger: GATCAAAAAGAAACCTTTCCAGCCTGCTGCCCAAAC...CCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
3UTR-3UTR CCA 90 bp ACAAGGAGGAAAAGACACTCCCACCCCTGCCCTAGGCTCCTCAACATCTTGGAGCCTGCATGGTCAGGCTaGCTGGGAAGGAACACCCAG +
Preference number: 2 (lower is better)
Translates to: TRRKRHSHPCPRLLNILEPAWSG*LGRNTQ
Trigger: CTGGGTGTTCCTTCCCAGCCAGCCTGACCATGCAGG...CTCCAAGATGTTGAGGAGCCTAGGGCAGGGGTGGGAGTGTCTTTTCCTCCTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR-3UTR CCA 90 bp AGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCGTTTGGGCAGCAGGCTaGAAAGGTTTCTTTTTGATC +
Preference number: 2 (lower is better)
Translates to: RPGEAATQGQPTRLCCETVWAAG*KGFFLI
Trigger: GATCAAAAAGAAACCTTTCCAGCCTGCTGCCCAAAC...GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
3UTR-3UTR CCA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTAGACAAACCATTGTGTaGTTGGGTTTGGGCAGCAGG +
Preference number: 2 (lower is better)
Translates to: ARPRGGERASTIYEGPAARQTIV*LGLGSR
Trigger: CCTGCTGCCCAAACCCAACCACACAATGGTTTGTCT...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
3UTR-3UTR CCA 90 bp TCACGAAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCGGTGCTGACCAGGCCTaGAGAAGCAGCCACACAAGG +
Preference number: 2 (lower is better)
Translates to: SRNARLPCLVFHTVACLSGADQA*RSSHTR
Trigger: CCTTGTGTGGCTGCTTCTCCAGGCCTGGTCAGCACC...GGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
3UTR CAA 90 bp TGGACCAGGAAGCTGGAGTCTGTGATCACGAAATGCTCGATTACCTaGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGC +
Preference number: 2 (lower is better)
Translates to: WTRKLESVITKCSIT*LSVSHSGVPVPEHS
Trigger: GCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCGTGATCACAGACTCCAGCTTCCTGGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
3UTR CAA 90 bp ACCCTCTACTTCTCAGCCCACTCTATCACCAGGACATCTGACCTCTaGCTGTCCGATACCATGCCTTCCTCCTATCCTGAAGCCTGTGCT +
Preference number: 2 (lower is better)
Translates to: TLYFSAHSITRTSDL*LSDTMPSSYPEACA
Trigger: AGCACAGGCTTCAGGATAGGAGGAAGGCATGGTATCGGACAGCAAGAGGTCAGATGTCCTGGTGATAGAGTGGGCTGAGAAGTAGAGGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR-3UTR CCA 90 bp ACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAAAACCATTGTGTGGTTaGGTTTGGGCAGCAGGCTGG +
Preference number: 2 (lower is better)
Translates to: TRLCCETSGRGKSINNLRKPLCG*VWAAGW
Trigger: CCAGCCTGCTGCCCAAACCCAACCACACAATGGTTT...TCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
3UTR-3UTR CCA 90 bp TCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGAAGACAAACCATTGTGTaGTTGGGTTTGGGCAGCAGG +
Preference number: 2 (lower is better)
Translates to: SGRGKSINNLRGSSCWVRRQTIV*LGLGSR
Trigger: CCTGCTGCCCAAACCCAACCACACAATGGTTTGTCT...TCTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
3UTR CAA 90 bp GGCAAGCCCAGAATCACCAGAAATGTCTACATCACAAGAAGAGCCTaGGGTGGCACTAACCCACATGAGAGTACTACCACACTGGCTGAG +
Preference number: 2 (lower is better)
Translates to: GKPRITRNVYITRRA*GGTNPHESTTTLAE
Trigger: CTCAGCCAGTGTGGTAGTACTCTCATGTGGGTTAGTGCCACCCAAGGCTCTTCTTGTGATGTAGACATTTCTGGTGATTCTGGGCTTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR-3UTR CCA 90 bp ACATGTGGGACTGGTTCCATCCAAAGGGAACTGAAGTTAGACTTGGGAAAGCAACCACCCTCAACTCAATaGCAAGCCCAGAATCACCAG +
Preference number: 2 (lower is better)
Translates to: TCGTGSIQRELKLDLGKQPPSTQ*QAQNHQ
Trigger: CTGGTGATTCTGGGCTTGCCATTGAGTTGAGGGTGG...TTGCTTTCCCAAGTCTAACTTCAGTTCCCTTTGGATGGAACCAGTCCCACATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR-3UTR TCA 90 bp CCACATGAGAGTACTACCACACTGGCTGAGGTAGAAAGAAGGCAACTGAACAAGGTGCTAAGCAGATTTTaGCAGCTAAAGGAAGCTGAC +
Preference number: 2 (lower is better)
Translates to: PHESTTTLAEVERRQLNKVLSRF*QLKEAD
Trigger: GTCAGCTTCCTTTAGCTGTCAAAATCTGCTTAGCAC...CTTGTTCAGTTGCCTTCTTTCTACCTCAGCCAGTGTGGTAGTACTCTCATGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR-3UTR CCA 90 bp TCCATCCAAAGGGAACTGAAGTTAGACTTGGGAAAGCAATTCTGGATCCACTTACACAGGGAACCCAAGTaGAATACACACAGCTGTGCC +
Preference number: 2 (lower is better)
Translates to: SIQRELKLDLGKQFWIHLHREPK*NTHSCA
Trigger: GGCACAGCTGTGTGTATTCCACTTGGGTTCCCTGTG...TAAGTGGATCCAGAATTGCTTTCCCAAGTCTAACTTCAGTTCCCTTTGGATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR-3UTR CCA 90 bp TCCATCCAAAGGGAACTGAAGTTAGACTTGGGAAAGCAATTCTGGATCCACTTAGTTTGGGCAGCAGGCTaGAAAGGTTTCTTTTTGATC +
Preference number: 2 (lower is better)
Translates to: SIQRELKLDLGKQFWIHLVWAAG*KGFFLI
Trigger: GATCAAAAAGAAACCTTTCCAGCCTGCTGCCCAAAC...TAAGTGGATCCAGAATTGCTTTCCCAAGTCTAACTTCAGTTCCCTTTGGATGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR-3UTR GCA 90 bp GAACAGCTTAGGATAGGGCTTACATCTACAGCACTTAGCAATAAAAGGAGATGTCTAAAGGAAGCTGACTaGTTTCAACAGAGGAAGGTC +
Preference number: 2 (lower is better)
Translates to: EQLRIGLTSTALSNKRRCLKEAD*FQQRKV
Trigger: GACCTTCCTCTGTTGAAAGCAGTCAGCTTCCTTTAG...ACATCTCCTTTTATTGCTAAGTGCTGTAGATGTAAGCCCTATCCTAAGCTGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR TCA 72 bp GTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTaGGCCTGCTGGGTGCTGACCAGGCCTGGAGAAGCA +
Preference number: 3 (lower is better)
Translates to: VPVPEHSIRSRP*ACWVLTRPGEA
Trigger: TGCTTCTCCAGGCCTGGTCAGCACCCAGCAGGCTCAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
3UTR GCA 72 bp GGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTaGTGCGAGACCTCGGGGAGGGGAAAGAGCATCAAC +
Preference number: 3 (lower is better)
Translates to: GEAATQGQPTRL*CETSGRGKSIN
Trigger: GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
3UTR CCA 72 bp GGTTATGCTTGCCAGAGCCTGCATGGTCAGGCTGGCTaGGAAGGAACACCCAGCTCTGGCCCAGTCCCTGAA +
Preference number: 3 (lower is better)
Translates to: GYACQSLHGQAG*EGTPSSGPVPE
Trigger: TTCAGGGACTGGGCCAGAGCTGGGTGTTCCTTCCCAGCCAGCCTGACCATGCAGGCTCTGGCAAGCATAACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR TCA 72 bp TGGCTGGGAAGGAACACCCAGCTCTGGCCCAGTCCCTaGATCATGTGGACTGAGGGAAAGCACTGGCCTCCA +
Preference number: 3 (lower is better)
Translates to: WLGRNTQLWPSP*IMWTEGKHWPP
Trigger: TGGAGGCCAGTGCTTTCCCTCAGTCCACATGATTCAGGGACTGGGCCAGAGCTGGGTGTTCCTTCCCAGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR GCA 72 bp GAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTaGGAGACCTCGGGGAGGGGAAAGAGCATCAACAAT +
Preference number: 3 (lower is better)
Translates to: EAATQGQPTRLC*ETSGRGKSINN
Trigger: ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
3UTR TCA 72 bp CTTTCGGAACCCAAAGTGGGCACGGTCAGCACTATCTaGGGACCCAGGCCACCCTCTACTTCTCAGCCCACT +
Preference number: 3 (lower is better)
Translates to: LSEPKVGTVSTI*GPRPPSTSQPT
Trigger: AGTGGGCTGAGAAGTAGAGGGTGGCCTGGGTCCTCAGATAGTGCTGACCGTGCCCACTTTGGGTTCCGAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR TCA 72 bp CACCCAGCTCTGGCCCAGTCCCTGAATCATGTGGACTaGGGGAAAGCACTGGCCTCCACCCTCAACTCAATG +
Preference number: 3 (lower is better)
Translates to: HPALAQSLNHVD*GKALASTLNSM
Trigger: CATTGAGTTGAGGGTGGAGGCCAGTGCTTTCCCTCAGTCCACATGATTCAGGGACTGGGCCAGAGCTGGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR GCA 72 bp GAAGGGAAGGAGGGAAGCAAGGTGTCCCCAGTCTCATaGAGATGGGAGAAGAGACGGCTCCAGGGAAAGGCA +
Preference number: 3 (lower is better)
Translates to: EGKEGSKVSPVS*RWEKRRLQGKA
Trigger: TGCCTTTCCCTGGAGCCGTCTCTTCTCCCATCTGCATGAGACTGGGGACACCTTGCTTCCCTCCTTCCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CCA 72 bp GTTTGTCTGCTCGGGACCACTTTTCTTGGTGAGGGTTaGCCTACAGCCAAGCTAGCTGGAGGCCAGTGGTCC +
Preference number: 3 (lower is better)
Translates to: VCLLGTTFLGEG*PTAKLAGGQWS
Trigger: GGACCACTGGCCTCCAGCTAGCTTGGCTGTAGGCCAACCCTCACCAAGAAAAGTGGTCCCGAGCAGACAAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CCA 72 bp AAGGAGGGAAGCAAGGTGTCCCCAGTCTCATGCAGATaGGAGAAGAGACGGCTCCAGGGAAAGGCAGGGAAG +
Preference number: 3 (lower is better)
Translates to: KEGSKVSPVSCR*EKRRLQGKAGK
Trigger: CTTCCCTGCCTTTCCCTGGAGCCGTCTCTTCTCCCATCTGCATGAGACTGGGGACACCTTGCTTCCCTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CCA 72 bp CATAAAGCATCCAGGTTATGCTTGCCAGAGCCTGCATaGTCAGGCTGGCTGGGAAGGAACACCCAGCTCTGG +
Preference number: 3 (lower is better)
Translates to: HKASRLCLPEPA*SGWLGRNTQLW
Trigger: CCAGAGCTGGGTGTTCCTTCCCAGCCAGCCTGACCATGCAGGCTCTGGCAAGCATAACCTGGATGCTTTATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR GCA 72 bp GCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTaGCTGTCCCAGAGCACAGCATCAGGAGCAGACCCT +
Preference number: 3 (lower is better)
Translates to: ARLPCLVFHTVA*LSQSTASGADP
Trigger: AGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
3UTR GCA 72 bp GCCTGTTCCTTAGGACTGCATAAAGCATCCAGGTTATaGTTGCCAGAGCCTGCATGGTCAGGCTGGCTGGGA +
Preference number: 3 (lower is better)
Translates to: ACSLGLHKASRL*LPEPAWSGWLG
Trigger: TCCCAGCCAGCCTGACCATGCAGGCTCTGGCAAGCATAACCTGGATGCTTTATGCAGTCCTAAGGAACAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR GCA 72 bp AGACATTCAACAAGGAGGAAAAGACACTCCCACCCCTaGCCTAGGCTCCTCAACATCTTGGAGGCTGCAGAG +
Preference number: 3 (lower is better)
Translates to: RHSTRRKRHSHP*PRLLNILEAAE
Trigger: CTCTGCAGCCTCCAAGATGTTGAGGAGCCTAGGGCAGGGGTGGGAGTGTCTTTTCCTCCTTGTTGAATGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR GCA 72 bp TCACCAGGACATCTGACCTCTTGCTGTCCGATACCATaGCTTCCTCCTATCCTGAAGCCTGTGCTAAGCAGA +
Preference number: 3 (lower is better)
Translates to: SPGHLTSCCPIP*LPPILKPVLSR
Trigger: TCTGCTTAGCACAGGCTTCAGGATAGGAGGAAGGCATGGTATCGGACAGCAAGAGGTCAGATGTCCTGGTGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR TCA 72 bp GCCTGTGCTAAGCAGATTTTGACAGCTAAAGGAAGCTaGCTGCTTTCAACAGAGGAAGGTCTGGGCGACAGG +
Preference number: 3 (lower is better)
Translates to: ACAKQILTAKGS*LLSTEEGLGDR
Trigger: CCTGTCGCCCAGACCTTCCTCTGTTGAAAGCAGTCAGCTTCCTTTAGCTGTCAAAATCTGCTTAGCACAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR GCA 72 bp GGGTGGACCAGGAAGCTGGAGTCTGTGATCACGAAATaGTCGATTACCTTGCTTAGTGTTTCACACAGTGGC +
Preference number: 3 (lower is better)
Translates to: GWTRKLESVITK*SITLLSVSHSG
Trigger: GCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCGTGATCACAGACTCCAGCTTCCTGGTCCACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
3UTR CCA 72 bp ACTGAGGGAAAGCACTGGCCTCCACCCTCAACTCAATaGCAAGCCCAGAATCACCAGAAATGTCTACATCAC +
Preference number: 3 (lower is better)
Translates to: TEGKHWPPPSTQ*QAQNHQKCLHH
Trigger: GTGATGTAGACATTTCTGGTGATTCTGGGCTTGCCATTGAGTTGAGGGTGGAGGCCAGTGCTTTCCCTCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CCA 72 bp GAGGGTTGGCCTACAGCCAAGCTAGCTGGAGGCCAGTaGTCCAAAAATTACCTCTTGTACCTGAGGAAAAGA +
Preference number: 3 (lower is better)
Translates to: EGWPTAKLAGGQ*SKNYLLYLRKR
Trigger: TCTTTTCCTCAGGTACAAGAGGTAATTTTTGGACCACTGGCCTCCAGCTAGCTTGGCTGTAGGCCAACCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR GCA 72 bp GATAGCTGTGCTCCCTGCTTTGGGTTGTTTTCATTCTaGCTTCCCTGTGAATCCACCCTAAATGACCACCTC +
Preference number: 3 (lower is better)
Translates to: DSCAPCFGLFSF*LPCESTLNDHL
Trigger: GAGGTGGTCATTTAGGGTGGATTCACAGGGAAGGCAGAATGAAAACAACCCAAAGCAGGGAGCACAGCTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR TCA 72 bp CTTCCTCCTATCCTGAAGCCTGTGCTAAGCAGATTTTaGCAGCTAAAGGAAGCTGACTGCTTTCAACAGAGG +
Preference number: 3 (lower is better)
Translates to: LPPILKPVLSRF*QLKEADCFQQR
Trigger: CCTCTGTTGAAAGCAGTCAGCTTCCTTTAGCTGTCAAAATCTGCTTAGCACAGGCTTCAGGATAGGAGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR GCA 72 bp CTGAGGAAAAGATCTCCTTCAGATAGCTGTGCTCCCTaGTTTGGGTTGTTTTCATTCTGCCTTCCCTGTGAA +
Preference number: 3 (lower is better)
Translates to: LRKRSPSDSCAP*FGLFSFCLPCE
Trigger: TTCACAGGGAAGGCAGAATGAAAACAACCCAAAGCAGGGAGCACAGCTATCTGAAGGAGATCTTTTCCTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CCA 72 bp GAATCACCAGAAATGTCTACATCACAAGAAGAGCCTTaGGTGGCACTAACCCACATGAGAGTACTACCACAC +
Preference number: 3 (lower is better)
Translates to: ESPEMSTSQEEP*VALTHMRVLPH
Trigger: GTGTGGTAGTACTCTCATGTGGGTTAGTGCCACCCAAGGCTCTTCTTGTGATGTAGACATTTCTGGTGATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CCA 72 bp CTCAGTATCGTTCTTCTAAGTGGGTACATGTGGGACTaGTTCCATCCAAAGGGAACTGAAGTTAGACTTGGG +
Preference number: 3 (lower is better)
Translates to: LSIVLLSGYMWD*FHPKGTEVRLG
Trigger: CCCAAGTCTAACTTCAGTTCCCTTTGGATGGAACCAGTCCCACATGTACCCACTTAGAAGAACGATACTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CCA 72 bp TCCCATCTCAGTATCGTTCTTCTAAGTGGGTACATGTaGGACTGGTTCCATCCAAAGGGAACTGAAGTTAGA +
Preference number: 3 (lower is better)
Translates to: SHLSIVLLSGYM*DWFHPKGTEVR
Trigger: TCTAACTTCAGTTCCCTTTGGATGGAACCAGTCCCACATGTACCCACTTAGAAGAACGATACTGAGATGGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CCA 72 bp GATGTTCTTTTCCCATCTCAGTATCGTTCTTCTAAGTaGGTACATGTGGGACTGGTTCCATCCAAAGGGAAC +
Preference number: 3 (lower is better)
Translates to: DVLFPSQYRSSK*VHVGLVPSKGN
Trigger: GTTCCCTTTGGATGGAACCAGTCCCACATGTACCCACTTAGAAGAACGATACTGAGATGGGAAAAGAACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR-3UTR CAA 90 bp CCACATGAGAGTACTACCACACTGGCTGAGGTAGAAAGAAGGCAACTGAACAAGAAATGCTCGATTACCTaGCTTAGTGTTTCACACAGT +
Preference number: 3 (lower is better)
Translates to: PHESTTTLAEVERRQLNKKCSIT*LSVSHS
Trigger: ACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTT...CTTGTTCAGTTGCCTTCTTTCTACCTCAGCCAGTGTGGTAGTACTCTCATGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp AAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGTCCCGCTTGGCCTGCTaGACACCCTGTGGGTCTCCC +
Preference number: 4 (lower is better)
Translates to: KQPHKASPPGFAARPRGGSRLAC*TPCGSP
Trigger: GGGAGACCCACAGGGTGTTCAGCAGGCCAAGCGGGA...CCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGCCAGCAGCTCCCGCTTaGCCTGCTGAACACCCTGTG +
Preference number: 4 (lower is better)
Translates to: EAATQGQPTRLCCETSGRPAAPA*PAEHPV
Trigger: CACAGGGTGTTCAGCAGGCCAAGCGGGAGCTGCTGG...CCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGGGCATCCAGCTTCCCTaGGACCATGATGGAGAGACC +
Preference number: 4 (lower is better)
Translates to: SSHTRPAHQALLRDLGEGGIQLP*DHDGET
Trigger: GGTCTCTCCATCATGGTCTCAGGGAAGCTGGATGCC...CCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCT
64% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGTGGGGCCCTCCAGGGTaGTCTTGTCCTCACCTTCTG +
Preference number: 4 (lower is better)
Translates to: GEAATQGQPTRLCCETSGWGPPG*SCPHLL
Trigger: CAGAAGGTGAGGACAAGATCACCCTGGAGGGCCCCA...CCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp AAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGGTGACTGGAACCAGTaGCTCCAGGGCTTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: KQPHKASPPGFAARPRGGGDWNQ*LQGFLG
Trigger: GCCAAGGAAGCCCTGGAGGCACTGGTTCCAGTCACC...CCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGAGCCTGCTGGGTGCTCCAGCAGCTCCCGCTTaGCCTGCTGAACACCCTGTG +
Preference number: 4 (lower is better)
Translates to: RACPRAQHQEQTLSLLGAPAAPA*PAEHPV
Trigger: CACAGGGTGTTCAGCAGGCCAAGCGGGAGCTGCTGG...AGCACCCAGCAGGCTCAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp AGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCCAGGGTCGGTCTCCTTaGCCTCTCTGCCCTCTCCAG +
Preference number: 4 (lower is better)
Translates to: RPGEAATQGQPTRLCCETQGRSP*PLCPLQ
Trigger: CTGGAGAGGGCAGAGAGGCCAAGGAGACCGACCCTG...GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCAGGGTCGGTCTCCTTaGCCTCTCTGCCCTCTCCAG +
Preference number: 4 (lower is better)
Translates to: HTRPAHQALLRDLGEGKEQGRSP*PLCPLQ
Trigger: CTGGAGAGGGCAGAGAGGCCAAGGAGACCGACCCTG...CTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAACAGGGTCGGTCTCCTTaGCCTCTCTGCCCTCTCCAG +
Preference number: 4 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKQGRSP*PLCPLQ
Trigger: CTGGAGAGGGCAGAGAGGCCAAGGAGACCGACCCTG...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCCCCAAGGGAGGGTCTTaGGGGCCACTTGAGCCCCAA +
Preference number: 4 (lower is better)
Translates to: RPGEAATQGQPTRLCCETPKGGS*GPLEPQ
Trigger: TTGGGGCTCAAGTGGCCCCCAAGACCCTCCCTTGGG...GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAACTTTGCGGGCTTTCATaGCGGCATCCAGCTTCCCTG +
Preference number: 4 (lower is better)
Translates to: QPHKASPPGFAARPRGGELCGLS*RHPASL
Trigger: CAGGGAAGCTGGATGCCGTCATGAAAGCCCGCAAAG...TTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAATGCGAGCCACAGCCTaGGCCAGCTGCTCCTTCTCT +
Preference number: 4 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKMRATA*ASCSFS
Trigger: AGAGAAGGAGCAGCTGGCTCAGGCTGTGGCTCGCAT...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACTGGGGCCCTCCAGGGTaGTCTTGTCCTCACCTTCTG +
Preference number: 4 (lower is better)
Translates to: GQPTRLCCETSGRGKSINWGPPG*SCPHLL
Trigger: CAGAAGGTGAGGACAAGATCACCCTGGAGGGCCCCA...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACGGAGTCCTGTCACAGTaGCGCAATTGGGGTCTGGCG +
Preference number: 4 (lower is better)
Translates to: GQPTRLCCETSGRGKSINGVLSQ*RNWGLA
Trigger: CGCCAGACCCCAATTGCGTCACTGTGACAGGACTCC...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATGCGAGCCACAGCCTaGGCCAGCTGCTCCTTCTCT +
Preference number: 4 (lower is better)
Translates to: ASPPGFAARPRGGERASTMRATA*ASCSFS
Trigger: AGAGAAGGAGCAGCTGGCTCAGGCTGTGGCTCGCAT...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCCTCTACCTCGATGGTaGCTGGAACCAGTGCCTCCA +
Preference number: 4 (lower is better)
Translates to: HTRPAHQALLRDLGEGKEPLPRW*LEPVPP
Trigger: TGGAGGCACTGGTTCCAGTCACCATCGAGGTAGAGG...CTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAACCAAGCGGATCTGGGTaGTCACTGCTCCTTTTCTCC +
Preference number: 4 (lower is better)
Translates to: QPHKASPPGFAARPRGGEPSGSG*SLLLFS
Trigger: GGAGAAAAGGAGCAGTGATCACCCAGATCCGCTTGG...TTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp AAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGCCAGGTGCAGGAGCTaGTTCTTGGCCTTCTCTACA +
Preference number: 4 (lower is better)
Translates to: KQPHKASPPGFAARPRGGARCRS*FLAFST
Trigger: TGTAGAGAAGGCCAAGAAGCAGCTCCTGCACCTGGC...CCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGGGGTCATCTGGGCGTaGGATCTGGATTTTGGTTGC +
Preference number: 4 (lower is better)
Translates to: KQPHKASPPGFAARPRGGGVIWA*DLDFGC
Trigger: GCAACCAAAATCCAGATCCCACGCCCAGATGACCCC...CCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTT
62% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACGACGCAATTGGGGTCTaGCGCTCCACTCTGTGGGAA +
Preference number: 4 (lower is better)
Translates to: GQPTRLCCETSGRGKSINDAIGV*RSTLWE
Trigger: TTCCCACAGAGTGGAGCGCCAGACCCCAATTGCGTC...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGCCAGTGATCTTGATCTaGTTACTGGGGTCATCTGGG +
Preference number: 4 (lower is better)
Translates to: SSHTRPAHQALLRDLGEGPVILI*LLGSSG
Trigger: CCCAGATGACCCCAGTAATCAGATCAAGATCACTGG...CCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACCCAAGCGGATCTGGGTaGTCACTGCTCCTTTTCTCC +
Preference number: 4 (lower is better)
Translates to: GQPTRLCCETSGRGKSINPSGSG*SLLLFS
Trigger: GGAGAAAAGGAGCAGTGATCACCCAGATCCGCTTGG...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp GGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGGTGACTTTATCACTCTaGGTGCCAGAGCGTGGGAAG +
Preference number: 4 (lower is better)
Translates to: GEAATQGQPTRLCCETSGVTLSL*VPERGK
Trigger: CTTCCCACGCTCTGGCACGCAGAGTGATAAAGTCAC...CCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGCTGCTGAACACCCTGTaGGTCTCCCTCAATTCGGAT +
Preference number: 4 (lower is better)
Translates to: GEAATQGQPTRLCCETSGLLNTL*VSLNSD
Trigger: ATCCGAATTGAGGGAGACCCACAGGGTGTTCAGCAG...CCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGATGACAAAATGGCGGTaGTGTTTGGGGTCCACCAGC +
Preference number: 4 (lower is better)
Translates to: GEAATQGQPTRLCCETSGMTKWR*CLGSTS
Trigger: GCTGGTGGACCCCAAACACCACCGCCATTTTGTCAT...CCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGTCGGGGGCTGGTACATaGATGTTCACCTCAAACTCA +
Preference number: 4 (lower is better)
Translates to: SSHTRPAHQALLRDLGEGSGAGT*MFTSNS
Trigger: TGAGTTTGAGGTGAACATCCATGTACCAGCCCCCGA...CCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGCACCACAAAGCCTTTaGATGGTGCCCTGGACTCTT +
Preference number: 4 (lower is better)
Translates to: KQPHKASPPGFAARPRGGAPQSL*MVPWTL
Trigger: AAGAGTCCAGGGCACCATCCAAAGGCTTTGTGGTGC...CCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
3UTR CAA 72 bp TGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTaGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAA +
Preference number: 4 (lower is better)
Translates to: WRSSHTRPAHQA*LRDLGEGKEHQ
Trigger: TTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGCACCAGTCCTCTGCATaGTCTCAAGGCAGATTTTTG +
Preference number: 4 (lower is better)
Translates to: SSHTRPAHQALLRDLGEGHQSSA*SQGRFL
Trigger: CAAAAATCTGCCTTGAGATCATGCAGAGGACTGGTG...CCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGCCAGTGATCTTGATCTaGTTACTGGGGTCATCTGGG +
Preference number: 4 (lower is better)
Translates to: KQPHKASPPGFAARPRGGPVILI*LLGSSG
Trigger: CCCAGATGACCCCAGTAATCAGATCAAGATCACTGG...CCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp TCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGATCCCGCTTGGCCTGCTaGACACCCTGTGGGTCTCCC +
Preference number: 4 (lower is better)
Translates to: SGRGKSINNLRGSSCWVRSRLAC*TPCGSP
Trigger: GGGAGACCCACAGGGTGTTCAGCAGGCCAAGCGGGA...TCTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGGGCCCTTTGTGCCAATaGGAGAGTTGTGTAGTTTGG +
Preference number: 4 (lower is better)
Translates to: GEAATQGQPTRLCCETSGGPLCQ*ESCVVW
Trigger: CCAAACTACACAACTCTCTCATTGGCACAAAGGGCC...CCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCC
60% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATCAGAGCGTGGGAAGCTaGCCATCACCCCGCCATACT +
Preference number: 4 (lower is better)
Translates to: QPTRLCCETSGRGKSINNQSVGS*PSPRHT
Trigger: AGTATGGCGGGGTGATGGTCAGCTTCCCACGCTCTG...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp GAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGACTCTCCAAGCAAGCTaGTTTCTCAGGAAGTGGAGG +
Preference number: 4 (lower is better)
Translates to: EAATQGQPTRLCCETSGRTLQAS*FLRKWR
Trigger: CCTCCACTTCCTGAGAAAGCAGCTTGCTTGGAGAGT...CCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACTCACAGTCTCAGAGATaGTGTCGGAGGGTGGGATCT +
Preference number: 4 (lower is better)
Translates to: GQPTRLCCETSGRGKSINSQSQR*CRRVGS
Trigger: AGATCCCACCCTCCGACAGCATCTCTGAGACTGTGA...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp CGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGAGCCTGCTGGGTGCTGTGACTTTATCACTCTaGGTGCCAGAGCGTGGGAAG +
Preference number: 4 (lower is better)
Translates to: RACPRAQHQEQTLSLLGAVTLSL*VPERGK
Trigger: CTTCCCACGCTCTGGCACGCAGAGTGATAAAGTCAC...AGCACCCAGCAGGCTCAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGTGACTTTATCACTCTaGGTGCCAGAGCGTGGGAAG +
Preference number: 4 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKVTLSL*VPERGK
Trigger: CTTCCCACGCTCTGGCACGCAGAGTGATAAAGTCAC...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAAAAGCCCGATCTTCCTaGTCAGCCTGCAGCTCCTTT +
Preference number: 4 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKKARSS*SACSSF
Trigger: AAAGGAGCTGCAGGCTGAGCAGGAAGATCGGGCTTT...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
60% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTCTGCGTGCCAGAGCGTaGGAAGCTGACCATCACCCC +
Preference number: 4 (lower is better)
Translates to: SPPGFAARPRGGERASTILRARA*EADHHP
Trigger: GGGGTGATGGTCAGCTTCCCACGCTCTGGCACGCAG...AATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGATTTGGTCCTGGGGCTaGTTCCCATCATCCTTATCA +
Preference number: 4 (lower is better)
Translates to: SSHTRPAHQALLRDLGEGIWSWG*FPSSLS
Trigger: TGATAAGGATGATGGGAACCAGCCCCAGGACCAAAT...CCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAATGGTGATTTGGTCCTaGGGCTGGTTCCCATCATCC +
Preference number: 4 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKMVIWS*GWFPSS
Trigger: GGATGATGGGAACCAGCCCCAGGACCAAATCACCAT...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACATGGCGCTCCACTCTGTaGGAAGCGAATGTCCACCTT +
Preference number: 4 (lower is better)
Translates to: ASPPGFAARPRGGERASTWRSTL*EANVHL
Trigger: AAGGTGGACATTCGCTTCCCACAGAGTGGAGCGCCA...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAATTCCTCCACATTCTCTaGGAGTCCTGTCACAGTGAC +
Preference number: 4 (lower is better)
Translates to: QPHKASPPGFAARPRGGEFLHIL*ESCHSD
Trigger: GTCACTGTGACAGGACTCCCAGAGAATGTGGAGGAA...TTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTCCCAAGGGAGGGTCTTaGGGGCCACTTGAGCCCCAA +
Preference number: 4 (lower is better)
Translates to: ARPRGGERASTIYEGPAAPKGGS*GPLEPQ
Trigger: TTGGGGCTCAAGTGGCCCCCAAGACCCTCCCTTGGG...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGGCTTCCCTGAGACCATaGTGGAGAGACCTTGATCTT +
Preference number: 4 (lower is better)
Translates to: HTRPAHQALLRDLGEGKEASLRP*WRDLDL
Trigger: AAGATCAAGGTCTCTCCATCATGGTCTCAGGGAAGC...CTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp TTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGAGCTTTGCGGGCTTTCATaGCGGCATCCAGCTTCCCTG +
Preference number: 4 (lower is better)
Translates to: FHTVACLSQSTASGADPELCGLS*RHPASL
Trigger: CAGGGAAGCTGGATGCCGTCATGAAAGCCCGCAAAG...CTCAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGAGCCTGCTGGGTGCTTCCCTGTCTCCTGCATaGTTTCACCCACAAGTCTGT +
Preference number: 4 (lower is better)
Translates to: RACPRAQHQEQTLSLLGASLSPA*FHPQVC
Trigger: ACAGACTTGTGGGTGAAATCATGCAGGAGACAGGGA...AGCACCCAGCAGGCTCAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACTCCCTGTCTCCTGCATaGTTTCACCCACAAGTCTGT +
Preference number: 4 (lower is better)
Translates to: GQPTRLCCETSGRGKSINSLSPA*FHPQVC
Trigger: ACAGACTTGTGGGTGAAATCATGCAGGAGACAGGGA...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGGAAGGGGCAGAGACTaGGGAGACTGTAAAACTGTT +
Preference number: 4 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKGRGRD*GDCKTV
Trigger: AACAGTTTTACAGTCTCCTCAGTCTCTGCCCCTTCC...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACACCAATGATGAAACGATaGAGCCAGGAAGGGGCAGAG +
Preference number: 4 (lower is better)
Translates to: ASPPGFAARPRGGERASTPMMKR*SQEGAE
Trigger: CTCTGCCCCTTCCTGGCTTCATCGTTTCATCATTGG...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGTTGGCATTTGCTGAGTaGTTTTGGCCAGGTTCTGCC +
Preference number: 4 (lower is better)
Translates to: HTRPAHQALLRDLGEGKELAFAE*FWPGSA
Trigger: GGCAGAACCTGGCCAAAATCACTCAGCAAATGCCAA...CTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATCACCACATTCCTCCATaGTGGAGCGGATCAGACGGC +
Preference number: 4 (lower is better)
Translates to: QPTRLCCETSGRGKSINNHHIPP*WSGSDG
Trigger: GCCGTCTGATCCGCTCCATCATGGAGGAATGTGGTG...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGCTCCCCCTTTGCCAATaGGGAATTTGTGGTATTCTG +
Preference number: 4 (lower is better)
Translates to: EAATQGQPTRLCCETSGRLPLCQ*GICGIL
Trigger: CAGAATACCACAAATTCCTCATTGGCAAAGGGGGAG...CCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAATCCTCAATGATTTCCTaGATGCGTTTCTTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: QPHKASPPGFAARPRGGESSMIS*MRFLAA
Trigger: GGCAGCCAAGAAACGCATTCAGGAAATCATTGAGGA...TTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCACCCATGACCGATCGGTaGAACTTCTGGGGTATAGCA +
Preference number: 4 (lower is better)
Translates to: KASPPGFAARPRGGERASPMTDR*NFWGIA
Trigger: TGCTATACCCCAGAAGTTTCACCGATCGGTCATGGG...TGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCGATCTGCTGGATTCTTaGACCTTTGGGACCCATGAC +
Preference number: 4 (lower is better)
Translates to: RPGEAATQGQPTRLCCETDLLDS*TFGTHD
Trigger: GTCATGGGTCCCAAAGGTTCAAGAATCCAGCAGATC...GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp TGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCGGAGTCCTGTCACAGTaGCGCAATTGGGGTCTGGCG +
Preference number: 4 (lower is better)
Translates to: CETSGRGKSINNLRGSSCGVLSQ*RNWGLA
Trigger: CGCCAGACCCCAATTGCGTCACTGTGACAGGACTCC...GCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACACTCTCCAAGCAAGCTaGTTTCTCAGGAAGTGGAGG +
Preference number: 4 (lower is better)
Translates to: GQPTRLCCETSGRGKSINTLQAS*FLRKWR
Trigger: CCTCCACTTCCTGAGAAAGCAGCTTGCTTGGAGAGT...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTCTCCTCAGCCAGGTaGAGGAGCTGCTTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: QPTRLCCETSGRGKSINNFSSAR*RSCFLA
Trigger: GGCCAAGAAGCAGCTCCTGCACCTGGCTGAGGAGAA...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGTGACTGGAACCAGTaGCTCCAGGGCTTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: ARPRGGERASTIYEGPAAGDWNQ*LQGFLG
Trigger: GCCAAGGAAGCCCTGGAGGCACTGGTTCCAGTCACC...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp AAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAAAAGCCCGATCTTCCTaGTCAGCCTGCAGCTCCTTT +
Preference number: 4 (lower is better)
Translates to: KASPPGFAARPRGGERASKARSS*SACSSF
Trigger: AAAGGAGCTGCAGGCTGAGCAGGAAGATCGGGCTTT...TGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp GGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGCATGTAAACTTGCAGTaGCTCACTGTCCACCACATC +
Preference number: 4 (lower is better)
Translates to: GEAATQGQPTRLCCETSGHVNLQ*LTVHHI
Trigger: GATGTGGTGGACAGTGAGGCACTGCAAGTTTACATG...CCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAGAATTTGTGGTATTCTaGCTTGGCTCGGATGTCCAC +
Preference number: 4 (lower is better)
Translates to: QPHKASPPGFAARPRGGEEFVVF*LGSDVH
Trigger: GTGGACATCCGAGCCAAGCCAGAATACCACAAATTC...TTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGAATGGCGGTGGTGTTTaGGGTCCACCAGCATATAGT +
Preference number: 4 (lower is better)
Translates to: HTRPAHQALLRDLGEGKENGGGV*GPPAYS
Trigger: ACTATATGCTGGTGGACCCCAAACACCACCGCCATT...CTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp ACAAGGAGGAAAAGACACTCCCACCCCTGCCCTAGGCTCCTCAACATCTTGGAGCTGCGTGCCAGAGCGTaGGAAGCTGACCATCACCCC +
Preference number: 4 (lower is better)
Translates to: TRRKRHSHPCPRLLNILELRARA*EADHHP
Trigger: GGGGTGATGGTCAGCTTCCCACGCTCTGGCACGCAG...CTCCAAGATGTTGAGGAGCCTAGGGCAGGGGTGGGAGTGTCTTTTCCTCCTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp AAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGTCATCTCCATTCTCCTaGATGGAAGGCTCTACACTG +
Preference number: 4 (lower is better)
Translates to: KQPHKASPPGFAARPRGGSSPFS*MEGSTL
Trigger: CAGTGTAGAGCCTTCCATCCAGGAGAATGGAGATGA...CCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAGCACCACAAAGCCTTTaGATGGTGCCCTGGACTCTT +
Preference number: 4 (lower is better)
Translates to: ASPPGFAARPRGGERASTAPQSL*MVPWTL
Trigger: AAGAGTCCAGGGCACCATCCAAAGGCTTTGTGGTGC...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTCTTTGCGGGCTTTCATaGCGGCATCCAGCTTCCCTG +
Preference number: 4 (lower is better)
Translates to: ARPRGGERASTIYEGPAALCGLS*RHPASL
Trigger: CAGGGAAGCTGGATGCCGTCATGAAAGCCCGCAAAG...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTTGTACGGCCCAGCGATaGAGGGGTGGAAAGCCTTCT +
Preference number: 4 (lower is better)
Translates to: ARPRGGERASTIYEGPAACTAQR*RGGKPS
Trigger: AGAAGGCTTTCCACCCCTTCATCGCTGGGCCGTACA...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTGTACGGCCCAGCGATaGAGGGGTGGAAAGCCTTCT +
Preference number: 4 (lower is better)
Translates to: SPPGFAARPRGGERASTICTAQR*RGGKPS
Trigger: AGAAGGCTTTCCACCCCTTCATCGCTGGGCCGTACA...AATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGTGTACGGCCCAGCGATaGAGGGGTGGAAAGCCTTCT +
Preference number: 4 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLCTAQR*RGGKPS
Trigger: AGAAGGCTTTCCACCCCTTCATCGCTGGGCCGTACA...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp TCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGAATGCGAGCCACAGCCTaGGCCAGCTGCTCCTTCTCT +
Preference number: 4 (lower is better)
Translates to: SGRGKSINNLRGSSCWVRMRATA*ASCSFS
Trigger: AGAGAAGGAGCAGCTGGCTCAGGCTGTGGCTCGCAT...TCTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAACAGGATTTCTTGCAGTaGATTGCCCTTTGGCCCAAT +
Preference number: 4 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKQDFLQ*IALWPN
Trigger: ATTGGGCCAAAGGGCAATTCACTGCAAGAAATCCTG...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACCAGGATTTCTTGCAGTaGATTGCCCTTTGGCCCAAT +
Preference number: 4 (lower is better)
Translates to: GQPTRLCCETSGRGKSINQDFLQ*IALWPN
Trigger: ATTGGGCCAAAGGGCAATTCACTGCAAGAAATCCTG...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp ACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGTGGGGCCCTCCAGGGTaGTCTTGTCCTCACCTTCTG +
Preference number: 4 (lower is better)
Translates to: TLLSVSHSGVPVPEHSIRWGPPG*SCPHLL
Trigger: CAGAAGGTGAGGACAAGATCACCCTGGAGGGCCCCA...CCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp GAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGCTCCGCTCTTTCCAATaGGGTGTCTGTGGAATTTAT +
Preference number: 4 (lower is better)
Translates to: EAATQGQPTRLCCETSGRLRSFQ*GVCGIY
Trigger: ATAAATTCCACAGACACCTCATTGGAAAGAGCGGAG...CCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAATCTTTGCTCGATaGTTAGATCCTTGGTGCGCT +
Preference number: 4 (lower is better)
Translates to: KQPHKASPPGFAARPRGGEIFAR*LDPWCA
Trigger: AGCGCACCAAGGATCTAATCATCGAGCAAAGATTTC...CCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAACGCCTCCTTTCCCGATaGTATTCTTGTGAAACTGTT +
Preference number: 4 (lower is better)
Translates to: QPHKASPPGFAARPRGGERLLSR*YSCETV
Trigger: AACAGTTTCACAAGAATATCATCGGGAAAGGAGGCG...TTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTCACCACATTCCTCCATaGTGGAGCGGATCAGACGGC +
Preference number: 4 (lower is better)
Translates to: SPPGFAARPRGGERASTIHHIPP*WSGSDG
Trigger: GCCGTCTGATCCGCTCCATCATGGAGGAATGTGGTG...AATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGCAGAGCGTGGGAAGCTaGCCATCACCCCGCCATACT +
Preference number: 4 (lower is better)
Translates to: QALLRDLGEGKEHQQFTRQSVGS*PSPRHT
Trigger: AGTATGGCGGGGTGATGGTCAGCTTCCCACGCTCTG...CCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGAGCCTGCTGGGTGCTCATTCCACTGTCACTTaGGCTTCCAGATCCTCAATG +
Preference number: 4 (lower is better)
Translates to: RACPRAQHQEQTLSLLGAHSTVT*ASRSSM
Trigger: CATTGAGGATCTGGAAGCTCAAGTGACAGTGGAATG...AGCACCCAGCAGGCTCAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp GCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTCCTCTACCTCGATGGTaGCTGGAACCAGTGCCTCCA +
Preference number: 4 (lower is better)
Translates to: AHQALLRDLGEGKEHQQFPLPRW*LEPVPP
Trigger: TGGAGGCACTGGTTCCAGTCACCATCGAGGTAGAGG...AAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCACGAGCGTGCACACGGTaGTCCAGTGGAACATCCTCA +
Preference number: 4 (lower is better)
Translates to: PRGGERASTIYEGPAAGSRACTR*SSGTSS
Trigger: TGAGGATGTTCCACTGGATCACCGTGTGCACGCTCG...TGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGTCTTGGGGGCCACTTaGGCCCCAAAGCTGGGAAAT +
Preference number: 4 (lower is better)
Translates to: PRGGERASTIYEGPAAGSVLGAT*APKLGN
Trigger: ATTTCCCAGCTTTGGGGCTCAAGTGGCCCCCAAGAC...TGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGTCTTGGGGGCCACTTaGGCCCCAAAGCTGGGAAAT +
Preference number: 4 (lower is better)
Translates to: ARPRGGERASTIYEGPAAVLGAT*APKLGN
Trigger: ATTTCCCAGCTTTGGGGCTCAAGTGGCCCCCAAGAC...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp GCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTTTCTCCTCAGCCAGGTaGAGGAGCTGCTTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: AHQALLRDLGEGKEHQQFFSSAR*RSCFLA
Trigger: GGCCAAGAAGCAGCTCCTGCACCTGGCTGAGGAGAA...AAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp TGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTTCTCCTCAGCCAGGTaGAGGAGCTGCTTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: CCETSGRGKSINNLRGSSFSSAR*RSCFLA
Trigger: GGCCAAGAAGCAGCTCCTGCACCTGGCTGAGGAGAA...GCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGTCTGGGCGTGGGATCTaGATTTTGGTTGCAGTTTTT +
Preference number: 4 (lower is better)
Translates to: EAATQGQPTRLCCETSGRSGRGI*ILVAVF
Trigger: AAAAACTGCAACCAAAATCCAGATCCCACGCCCAGA...CCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCATTACTGGGGTCATCTaGGCGTGGGATCTGGATTTT +
Preference number: 4 (lower is better)
Translates to: RPGEAATQGQPTRLCCETITGVI*AWDLDF
Trigger: AAAATCCAGATCCCACGCCCAGATGACCCCAGTAAT...GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAACGGTTAACACTGGGTaGAGGGATGTTGATTCGCGT +
Preference number: 4 (lower is better)
Translates to: ASPPGFAARPRGGERASTTVNTG*RDVDSR
Trigger: ACGCGAATCAACATCCCTCCACCCAGTGTTAACCGT...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp ATGGAAGACATTCAACAAGGAGGAAAAGACACTCCCACCCCTGCCCTAGGCTCCCCAGCAGCTCCCGCTTaGCCTGCTGAACACCCTGTG +
Preference number: 4 (lower is better)
Translates to: MEDIQQGGKDTPTPALGSPAAPA*PAEHPV
Trigger: CACAGGGTGTTCAGCAGGCCAAGCGGGAGCTGCTGG...GGAGCCTAGGGCAGGGGTGGGAGTGTCTTTTCCTCCTTGTTGAATGTCTTCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp AGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTGCTTCCAGCTCCTTTTaGGCCTCACGGACAGCATCC +
Preference number: 4 (lower is better)
Translates to: SPPGFAARPRGGERASTIASSSF*ASRTAS
Trigger: GGATGCTGTCCGTGAGGCCCAAAAGGAGCTGGAAGC...AATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCACTGCGTGCCAGAGCGTaGGAAGCTGACCATCACCCC +
Preference number: 4 (lower is better)
Translates to: RLPCLVFHTVACLSQSTALRARA*EADHHP
Trigger: GGGGTGATGGTCAGCTTCCCACGCTCTGGCACGCAG...TGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAATCCCGAGTGATCTGCTaGATTCTTGAACCTTTGGGA +
Preference number: 4 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKSRVIC*ILEPLG
Trigger: TCCCAAAGGTTCAAGAATCCAGCAGATCACTCGGGA...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCCTCCATTCTCCTGGATaGAAGGCTCTACACTGTGAA +
Preference number: 4 (lower is better)
Translates to: RPGEAATQGQPTRLCCETLHSPG*KALHCE
Trigger: TTCACAGTGTAGAGCCTTCCATCCAGGAGAATGGAG...GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACCACACGGTGATCCAGTaGAACATCCTCAGAAACCAT +
Preference number: 4 (lower is better)
Translates to: GQPTRLCCETSGRGKSINHTVIQ*NILRNH
Trigger: ATGGTTTCTGAGGATGTTCCACTGGATCACCGTGTG...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTGACGCAATTGGGGTCTaGCGCTCCACTCTGTGGGAA +
Preference number: 4 (lower is better)
Translates to: SPPGFAARPRGGERASTIDAIGV*RSTLWE
Trigger: TTCCCACAGAGTGGAGCGCCAGACCCCAATTGCGTC...AATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACATGATGGAGAGACCTTaGTCTTTAGCCAGAGAGAGT +
Preference number: 4 (lower is better)
Translates to: GQPTRLCCETSGRGKSINMMERP*SLARES
Trigger: ACTCTCTCTGGCTAAAGATCAAGGTCTCTCCATCAT...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGGCTGGCTGGGAAGGAACACCCAGCTCTGGCCCAGTCCCTGAATCATGTGGATCCCTGTCTCCTGCATaGTTTCACCCACAAGTCTGT +
Preference number: 4 (lower is better)
Translates to: QAGWEGTPSSGPVPESCGSLSPA*FHPQVC
Trigger: ACAGACTTGTGGGTGAAATCATGCAGGAGACAGGGA...TCCACATGATTCAGGGACTGGGCCAGAGCTGGGTGTTCCTTCCCAGCCAGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp AGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGCCAATGATTGTGCGATaGAATCTTTGCTCGATGATT +
Preference number: 4 (lower is better)
Translates to: SSHTRPAHQALLRDLGEGPMIVR*NLCSMI
Trigger: AATCATCGAGCAAAGATTTCATCGCACAATCATTGG...CCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGCACCTTTCTGCCCAATaGTTGTGCGATGAAATCTTT +
Preference number: 4 (lower is better)
Translates to: EAATQGQPTRLCCETSGRHLSAQ*LCDEIF
Trigger: AAAGATTTCATCGCACAATCATTGGGCAGAAAGGTG...CCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGAGCCTGCTGGGTGCTCGCCTCCTTTCCCGATaGTATTCTTGTGAAACTGTT +
Preference number: 4 (lower is better)
Translates to: RACPRAQHQEQTLSLLGARLLSR*YSCETV
Trigger: AACAGTTTCACAAGAATATCATCGGGAAAGGAGGCG...AGCACCCAGCAGGCTCAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp TCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGACACCACATTCCTCCATaGTGGAGCGGATCAGACGGC +
Preference number: 4 (lower is better)
Translates to: SGRGKSINNLRGSSCWVRHHIPP*WSGSDG
Trigger: GCCGTCTGATCCGCTCCATCATGGAGGAATGTGGTG...TCTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp TGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCGGCCTTCTCTACATCTaGGGAAGGACCCCTGATGAC +
Preference number: 4 (lower is better)
Translates to: CCETSGRGKSINNLRGSSGLLYI*GRTPDD
Trigger: GTCATCAGGGGTCCTTCCTCAGATGTAGAGAAGGCC...GCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGCCTTCTCTACATCTaGGGAAGGACCCCTGATGAC +
Preference number: 4 (lower is better)
Translates to: ARPRGGERASTIYEGPAAGLLYI*GRTPDD
Trigger: GTCATCAGGGGTCCTTCCTCAGATGTAGAGAAGGCC...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACATCCTCAATGATTTCCTaGATGCGTTTCTTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: ASPPGFAARPRGGERASTSSMIS*MRFLAA
Trigger: GGCAGCCAAGAAACGCATTCAGGAAATCATTGAGGA...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAACTCTATCTGGGAACTTaGTTTGAACATTGTAGTCCC +
Preference number: 4 (lower is better)
Translates to: QPHKASPPGFAARPRGGELYLGT*FEHCSP
Trigger: GGGACTACAATGTTCAAATCAAGTTCCCAGATAGAG...TTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCAGGAGTCCTGTCACAGTaGCGCAATTGGGGTCTGGCG +
Preference number: 4 (lower is better)
Translates to: RLPCLVFHTVACLSQSTAGVLSQ*RNWGLA
Trigger: CGCCAGACCCCAATTGCGTCACTGTGACAGGACTCC...TGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp ACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGGTCTTGGGGGCCACTTaGGCCCCAAAGCTGGGAAAT +
Preference number: 4 (lower is better)
Translates to: TLLSVSHSGVPVPEHSIRVLGAT*APKLGN
Trigger: ATTTCCCAGCTTTGGGGCTCAAGTGGCCCCCAAGAC...CCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGCCAGGTGCAGGAGCTaGTTCTTGGCCTTCTCTACA +
Preference number: 4 (lower is better)
Translates to: ARPRGGERASTIYEGPAAARCRS*FLAFST
Trigger: TGTAGAGAAGGCCAAGAAGCAGCTCCTGCACCTGGC...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp GAAGGAACACCCAGCTCTGGCCCAGTCCCTGAATCATGTGGACTGAGGGAAAGCGCCAGGTGCAGGAGCTaGTTCTTGGCCTTCTCTACA +
Preference number: 4 (lower is better)
Translates to: EGTPSSGPVPESCGLRESARCRS*FLAFST
Trigger: TGTAGAGAAGGCCAAGAAGCAGCTCCTGCACCTGGC...GCTTTCCCTCAGTCCACATGATTCAGGGACTGGGCCAGAGCTGGGTGTTCCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAGTAAAACTCTTGGTTTaGTTCTCCTCAGCCAGGTGC +
Preference number: 4 (lower is better)
Translates to: ASPPGFAARPRGGERASTVKLLV*FSSARC
Trigger: GCACCTGGCTGAGGAGAAGCAAACCAAGAGTTTTAC...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp AGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCAATGCGTTTCTTGGCTaGCTCCACACAGTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: SVSHSGVPVPEHSIRSRPNAFLG*LHTVLG
Trigger: GCCAAGGACTGTGTGGAGGCAGCCAAGAAACGCATT...GGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp TGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGAATGCGTTTCTTGGCTaGCTCCACACAGTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: CFTQWRACPRAQHQEQTLNAFLG*LHTVLG
Trigger: GCCAAGGACTGTGTGGAGGCAGCCAAGAAACGCATT...CAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACTCCTCAGAAACCATCTaGTCAAGCTCACCCACAATT +
Preference number: 4 (lower is better)
Translates to: GQPTRLCCETSGRGKSINSSETI*SSSPTI
Trigger: AATTGTGGGTGAGCTTGAGCAGATGGTTTCTGAGGA...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAGGCATCCTTGTAGGTTaGAGGGTCATTTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: KASPPGFAARPRGGERASGILVG*RVIFLF
Trigger: GAAGAGGAAAATGACCCTCCAACCTACAAGGATGCC...TGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCTGGGCGTGGGATCTaGATTTTGGTTGCAGTTTTT +
Preference number: 4 (lower is better)
Translates to: RPGEAATQGQPTRLCCETSGRGI*ILVAVF
Trigger: AAAAACTGCAACCAAAATCCAGATCCCACGCCCAGA...GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGTCTGGGCGTGGGATCTaGATTTTGGTTGCAGTTTTT +
Preference number: 4 (lower is better)
Translates to: HTRPAHQALLRDLGEGKESGRGI*ILVAVF
Trigger: AAAAACTGCAACCAAAATCCAGATCCCACGCCCAGA...CTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CTAGCCGCTGTGGAGCTCTGGTGTGAAGGTCAGAGTGCTGACTACATGCTGGGTGGGGTCATCTGGGCGTaGGATCTGGATTTTGGTTGC +
Preference number: 4 (lower is better)
Translates to: LAAVELWCEGQSADYMLGGVIWA*DLDFGC
Trigger: GCAACCAAAATCCAGATCCCACGCCCAGATGACCCC...ACCCAGCATGTAGTCAGCACTCTGACCTTCACACCAGAGCTCCACAGCGGCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGGGGGTCATCTGGGCGTaGGATCTGGATTTTGGTTGC +
Preference number: 4 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLGVIWA*DLDFGC
Trigger: GCAACCAAAATCCAGATCCCACGCCCAGATGACCCC...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTAGGAGGACTTCATaGCGAGCTTTCTCGATGCCT +
Preference number: 4 (lower is better)
Translates to: ASPPGFAARPRGGERASTIRRTS*RAFSMP
Trigger: AGGCATCGAGAAAGCTCGCCATGAAGTCCTCCTAAT...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATCCAGCGATGAAGGGGTaGAAAGCCTTCTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: QPTRLCCETSGRGKSINNPAMKG*KAFSTS
Trigger: AGAAGTGGAGAAGGCTTTCCACCCCTTCATCGCTGG...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGCCAATGAGGTGTCTGTaGAATTTATGGTCAATGTTG +
Preference number: 4 (lower is better)
Translates to: SSHTRPAHQALLRDLGEGPMRCL*NLWSML
Trigger: CAACATTGACCATAAATTCCACAGACACCTCATTGG...CCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACATTGGCCAGATCTTTCTaGATAGACAGAATCCGGCTG +
Preference number: 4 (lower is better)
Translates to: ASPPGFAARPRGGERASTLARSF*IDRIRL
Trigger: CAGCCGGATTCTGTCTATCCAGAAAGATCTGGCCAA...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGAGTTGTGTAGTTTaGCAGGAATTGAGACCTCCA +
Preference number: 4 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKESCVV*QELRPP
Trigger: TGGAGGTCTCAATTCCTGCCAAACTACACAACTCTC...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCATCCCGAGTGATCTGCTaGATTCTTGAACCTTTGGGA +
Preference number: 4 (lower is better)
Translates to: KASPPGFAARPRGGERASSRVIC*ILEPLG
Trigger: TCCCAAAGGTTCAAGAATCCAGCAGATCACTCGGGA...TGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACACTCCATTCTCCTGGATaGAAGGCTCTACACTGTGAA +
Preference number: 4 (lower is better)
Translates to: ASPPGFAARPRGGERASTLHSPG*KALHCE
Trigger: TTCACAGTGTAGAGCCTTCCATCCAGGAGAATGGAG...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTTGGCGCTCCACTCTGTaGGAAGCGAATGTCCACCTT +
Preference number: 4 (lower is better)
Translates to: ARPRGGERASTIYEGPAAWRSTL*EANVHL
Trigger: AAGGTGGACATTCGCTTCCCACAGAGTGGAGCGCCA...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCGCTTCCCTGAGACCATaGTGGAGAGACCTTGATCTT +
Preference number: 4 (lower is better)
Translates to: SVSHSGVPVPEHSIRSRPASLRP*WRDLDL
Trigger: AAGATCAAGGTCTCTCCATCATGGTCTCAGGGAAGC...GGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp AGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCGCTCCTTCTCTCCAGTaGAGACGATTTCTGTACGGT +
Preference number: 4 (lower is better)
Translates to: SVSHSGVPVPEHSIRSRPAPSLQ*RRFLYG
Trigger: ACCGTACAGAAATCGTCTTCACTGGAGAGAAGGAGC...GGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCCAATGATGAAACGATaGAGCCAGGAAGGGGCAGAG +
Preference number: 4 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLPMMKR*SQEGAE
Trigger: CTCTGCCCCTTCCTGGCTTCATCGTTTCATCATTGG...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTTGGCATTTGCTGAGTaGTTTTGGCCAGGTTCTGCC +
Preference number: 4 (lower is better)
Translates to: SVSHSGVPVPEHSIRSRPLAFAE*FWPGSA
Trigger: GGCAGAACCTGGCCAAAATCACTCAGCAAATGCCAA...GGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTGGCATTTGCTGAGTaGTTTTGGCCAGGTTCTGCC +
Preference number: 4 (lower is better)
Translates to: QPTRLCCETSGRGKSINNLAFAE*FWPGSA
Trigger: GGCAGAACCTGGCCAAAATCACTCAGCAAATGCCAA...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCCATTCTTGGGGCCTCTaGGTTGTACAATATCACTTT +
Preference number: 4 (lower is better)
Translates to: RPGEAATQGQPTRLCCETHSWGL*VVQYHF
Trigger: AAAGTGATATTGTACAACTCAGAGGCCCCAAGAATG...GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAACATTCTTGGGGCCTCTaGGTTGTACAATATCACTTT +
Preference number: 4 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKHSWGL*VVQYHF
Trigger: AAAGTGATATTGTACAACTCAGAGGCCCCAAGAATG...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCCCTTCCACAGGAAAGTaGATATGGACGCCACCACAT +
Preference number: 4 (lower is better)
Translates to: SVSHSGVPVPEHSIRSRPPSTGK*IWTPPH
Trigger: ATGTGGTGGCGTCCATATTCACTTTCCTGTGGAAGG...GGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp AGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGGGCCTTCTCTACATCTaGGGAAGGACCCCTGATGAC +
Preference number: 4 (lower is better)
Translates to: RLCCETSGRGKSINNLRGGLLYI*GRTPDD
Trigger: GTCATCAGGGGTCCTTCCTCAGATGTAGAGAAGGCC...CCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATGATCTGCTGGATTCTTaGACCTTTGGGACCCATGAC +
Preference number: 4 (lower is better)
Translates to: QPTRLCCETSGRGKSINNDLLDS*TFGTHD
Trigger: GTCATGGGTCCCAAAGGTTCAAGAATCCAGCAGATC...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp ACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGCCAAGCGGATCTGGGTaGTCACTGCTCCTTTTCTCC +
Preference number: 4 (lower is better)
Translates to: TLLSVSHSGVPVPEHSIRPSGSG*SLLLFS
Trigger: GGAGAAAAGGAGCAGTGATCACCCAGATCCGCTTGG...CCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp ACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGACGAGCGTGCACACGGTaGTCCAGTGGAACATCCTCA +
Preference number: 4 (lower is better)
Translates to: TRLCCETSGRGKSINNLRRACTR*SSGTSS
Trigger: TGAGGATGTTCCACTGGATCACCGTGTGCACGCTCG...TCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp AGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCATTTTGGCCAGGTTCTaGCCTTTCTTACCAATGATG +
Preference number: 4 (lower is better)
Translates to: RPGEAATQGQPTRLCCETILARF*PFLPMM
Trigger: CATCATTGGTAAGAAAGGGCAGAACCTGGCCAAAAT...GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp GAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGATCTTTTTAATGTTTaGGCCTCCTTTCCCGATGAT +
Preference number: 4 (lower is better)
Translates to: EAATQGQPTRLCCETSGRDLFNV*ASFPDD
Trigger: ATCATCGGGAAAGGAGGCGCAAACATTAAAAAGATC...CCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp GGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGGATCTTTTTAATGTTTaGGCCTCCTTTCCCGATGAT +
Preference number: 4 (lower is better)
Translates to: GEAATQGQPTRLCCETSGDLFNV*ASFPDD
Trigger: ATCATCGGGAAAGGAGGCGCAAACATTAAAAAGATC...CCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp AAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGACTCATCCATCATCTTaGGGATTCCACTTCCTTTTT +
Preference number: 4 (lower is better)
Translates to: KQPHKASPPGFAARPRGGTHPSS*GFHFLF
Trigger: AAAAAGGAAGTGGAATCCGCAAGATGATGGATGAGT...CCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp AGGACCCAGGCCACCCTCTACTTCTCAGCCCACTCTATCACCAGGACATCTGACAAAGCCCGATCTTCCTaGTCAGCCTGCAGCTCCTTT +
Preference number: 4 (lower is better)
Translates to: RTQATLYFSAHSITRTSDKARSS*SACSSF
Trigger: AAAGGAGCTGCAGGCTGAGCAGGAAGATCGGGCTTT...GTCAGATGTCCTGGTGATAGAGTGGGCTGAGAAGTAGAGGGTGGCCTGGGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp GAAGGAACACCCAGCTCTGGCCCAGTCCCTGAATCATGTGGACTGAGGGAAAGCCCAGCGATGAAGGGGTaGAAAGCCTTCTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: EGTPSSGPVPESCGLRESPAMKG*KAFSTS
Trigger: AGAAGTGGAGAAGGCTTTCCACCCCTTCATCGCTGG...GCTTTCCCTCAGTCCACATGATTCAGGGACTGGGCCAGAGCTGGGTGTTCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp CTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGCTGCTGAACACCCTGTaGGTCTCCCTCAATTCGGAT +
Preference number: 4 (lower is better)
Translates to: LGEGKEHQQFTRVQLLGQLLNTL*VSLNSD
Trigger: ATCCGAATTGAGGGAGACCCACAGGGTGTTCAGCAG...CTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAGAGAGTTGTGTAGTTTaGCAGGAATTGAGACCTCCA +
Preference number: 4 (lower is better)
Translates to: KASPPGFAARPRGGERASESCVV*QELRPP
Trigger: TGGAGGTCTCAATTCCTGCCAAACTACACAACTCTC...TGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp ACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGCTTCCAGCTCCTTTTaGGCCTCACGGACAGCATCC +
Preference number: 4 (lower is better)
Translates to: TRLCCETSGRGKSINNLRASSSF*ASRTAS
Trigger: GGATGCTGTCCGTGAGGCCCAAAAGGAGCTGGAAGC...TCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp TGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCATGACAAAATGGCGGTaGTGTTTGGGGTCCACCAGC +
Preference number: 4 (lower is better)
Translates to: CCETSGRGKSINNLRGSSMTKWR*CLGSTS
Trigger: GCTGGTGGACCCCAAACACCACCGCCATTTTGTCAT...GCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GCCAGTCTCTACCTCCCCTTTCCCCCAAAGTCTCAAGCCACCCTAGTCCACTGTATGACAAAATGGCGGTaGTGTTTGGGGTCCACCAGC +
Preference number: 4 (lower is better)
Translates to: ASLYLPFPPKSQATLVHCMTKWR*CLGSTS
Trigger: GCTGGTGGACCCCAAACACCACCGCCATTTTGTCAT...ACAGTGGACTAGGGTGGCTTGAGACTTTGGGGGAAAGGGGAGGTAGAGACTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp AGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTCCTGAATGCGTTTCTTaGCTGCCTCCACACAGTCCT +
Preference number: 4 (lower is better)
Translates to: SPPGFAARPRGGERASTIPECVS*LPPHSP
Trigger: AGGACTGTGTGGAGGCAGCCAAGAAACGCATTCAGG...AATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp TGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCCCTGAATGCGTTTCTTaGCTGCCTCCACACAGTCCT +
Preference number: 4 (lower is better)
Translates to: CCETSGRGKSINNLRGSSPECVS*LPPHSP
Trigger: AGGACTGTGTGGAGGCAGCCAAGAAACGCATTCAGG...GCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCCTGAATGCGTTTCTTaGCTGCCTCCACACAGTCCT +
Preference number: 4 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLPECVS*LPPHSP
Trigger: AGGACTGTGTGGAGGCAGCCAAGAAACGCATTCAGG...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTCGGGGGCTGGTACATaGATGTTCACCTCAAACTCA +
Preference number: 4 (lower is better)
Translates to: QPTRLCCETSGRGKSINNSGAGT*MFTSNS
Trigger: TGAGTTTGAGGTGAACATCCATGTACCAGCCCCCGA...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CTAGCCGCTGTGGAGCTCTGGTGTGAAGGTCAGAGTGCTGACTACATGCTGGGTATGGTGATTTGGTCCTaGGGCTGGTTCCCATCATCC +
Preference number: 4 (lower is better)
Translates to: LAAVELWCEGQSADYMLGMVIWS*GWFPSS
Trigger: GGATGATGGGAACCAGCCCCAGGACCAAATCACCAT...ACCCAGCATGTAGTCAGCACTCTGACCTTCACACCAGAGCTCCACAGCGGCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp ACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGACGCAATTGGGGTCTaGCGCTCCACTCTGTGGGAA +
Preference number: 4 (lower is better)
Translates to: TRLCCETSGRGKSINNLRDAIGV*RSTLWE
Trigger: TTCCCACAGAGTGGAGCGCCAGACCCCAATTGCGTC...TCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp TCACGAAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCCCAAGGGAGGGTCTTaGGGGCCACTTGAGCCCCAA +
Preference number: 4 (lower is better)
Translates to: SRNARLPCLVFHTVACLSPKGGS*GPLEPQ
Trigger: TTGGGGCTCAAGTGGCCCCCAAGACCCTCCCTTGGG...GGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATCACCAGTCCTCTGCATaGTCTCAAGGCAGATTTTTG +
Preference number: 4 (lower is better)
Translates to: QPTRLCCETSGRGKSINNHQSSA*SQGRFL
Trigger: CAAAAATCTGCCTTGAGATCATGCAGAGGACTGGTG...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp TGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCCCAGTGATCTTGATCTaGTTACTGGGGTCATCTGGG +
Preference number: 4 (lower is better)
Translates to: CETSGRGKSINNLRGSSCPVILI*LLGSSG
Trigger: CCCAGATGACCCCAGTAATCAGATCAAGATCACTGG...GCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGCTCCTTCTCTCCAGTaGAGACGATTTCTGTACGGT +
Preference number: 4 (lower is better)
Translates to: ARPRGGERASTIYEGPAAAPSLQ*RRFLYG
Trigger: ACCGTACAGAAATCGTCTTCACTGGAGAGAAGGAGC...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CTAGCCGCTGTGGAGCTCTGGTGTGAAGGTCAGAGTGCTGACTACATGCTGGGTGGAAGGGGCAGAGACTaGGGAGACTGTAAAACTGTT +
Preference number: 4 (lower is better)
Translates to: LAAVELWCEGQSADYMLGGRGRD*GDCKTV
Trigger: AACAGTTTTACAGTCTCCTCAGTCTCTGCCCCTTCC...ACCCAGCATGTAGTCAGCACTCTGACCTTCACACCAGAGCTCCACAGCGGCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGAAGGGGCAGAGACTaGGGAGACTGTAAAACTGTT +
Preference number: 4 (lower is better)
Translates to: ARPRGGERASTIYEGPAAGRGRD*GDCKTV
Trigger: AACAGTTTTACAGTCTCCTCAGTCTCTGCCCCTTCC...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGCCAATGATGAAACGATaGAGCCAGGAAGGGGCAGAG +
Preference number: 4 (lower is better)
Translates to: QALLRDLGEGKEHQQFTRPMMKR*SQEGAE
Trigger: CTCTGCCCCTTCCTGGCTTCATCGTTTCATCATTGG...CCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAATTTATGGTCAATGTTaGTCTCTACATAGTCCATCC +
Preference number: 4 (lower is better)
Translates to: QPHKASPPGFAARPRGGEIYGQC*SLHSPS
Trigger: GGATGGACTATGTAGAGATCAACATTGACCATAAAT...TTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp TGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCGGCCCTTTGTGCCAATaGGAGAGTTGTGTAGTTTGG +
Preference number: 4 (lower is better)
Translates to: CETSGRGKSINNLRGSSCGPLCQ*ESCVVW
Trigger: CCAAACTACACAACTCTCTCATTGGCACAAAGGGCC...GCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTCCTTCCACAGGAAAGTaGATATGGACGCCACCACAT +
Preference number: 4 (lower is better)
Translates to: SPPGFAARPRGGERASTIPSTGK*IWTPPH
Trigger: ATGTGGTGGCGTCCATATTCACTTTCCTGTGGAAGG...AATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCACCTTCCACAGGAAAGTaGATATGGACGCCACCACAT +
Preference number: 4 (lower is better)
Translates to: PRGGERASTIYEGPAAGSPSTGK*IWTPPH
Trigger: ATGTGGTGGCGTCCATATTCACTTTCCTGTGGAAGG...TGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGCCCATGACCGATCGGTaGAACTTCTGGGGTATAGCA +
Preference number: 4 (lower is better)
Translates to: QALLRDLGEGKEHQQFTRPMTDR*NFWGIA
Trigger: TGCTATACCCCAGAAGTTTCACCGATCGGTCATGGG...CCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCACTCTATCTGGGAACTTaGTTTGAACATTGTAGTCCC +
Preference number: 4 (lower is better)
Translates to: KASPPGFAARPRGGERASLYLGT*FEHCSP
Trigger: GGGACTACAATGTTCAAATCAAGTTCCCAGATAGAG...TGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp AGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGTTTAGTTCTAAGTCTTaGAGTTTCTCTCCGTTTTTG +
Preference number: 4 (lower is better)
Translates to: SSHTRPAHQALLRDLGEGFSSKS*SFSPFL
Trigger: CAAAAACGGAGAGAAACTGCAAGACTTAGAACTAAA...CCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp TCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGAAATGCGTTTCTTGGCTaGCTCCACACAGTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: SGRGKSINNLRGSSCWVRNAFLG*LHTVLG
Trigger: GCCAAGGACTGTGTGGAGGCAGCCAAGAAACGCATT...TCTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp TCACGAAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCGGTGACTGGAACCAGTaGCTCCAGGGCTTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: SRNARLPCLVFHTVACLSGDWNQ*LQGFLG
Trigger: GCCAAGGAAGCCCTGGAGGCACTGGTTCCAGTCACC...GGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp CCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCACCTGGACTCTTCATGTaGTGGGGGCTTCATGTAAAC +
Preference number: 4 (lower is better)
Translates to: PRGGERASTIYEGPAAGSPGLFM*WGLHVN
Trigger: GTTTACATGAAGCCCCCAGCACATGAAGAGTCCAGG...TGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp CTAGCCGCTGTGGAGCTCTGGTGTGAAGGTCAGAGTGCTGACTACATGCTGGGTCCTGGACTCTTCATGTaGTGGGGGCTTCATGTAAAC +
Preference number: 4 (lower is better)
Translates to: LAAVELWCEGQSADYMLGPGLFM*WGLHVN
Trigger: GTTTACATGAAGCCCCCAGCACATGAAGAGTCCAGG...ACCCAGCATGTAGTCAGCACTCTGACCTTCACACCAGAGCTCCACAGCGGCTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp TGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCCCTGGACTCTTCATGTaGTGGGGGCTTCATGTAAAC +
Preference number: 4 (lower is better)
Translates to: CCETSGRGKSINNLRGSSPGLFM*WGLHVN
Trigger: GTTTACATGAAGCCCCCAGCACATGAAGAGTCCAGG...GCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACACCAATAACAAAGCGATaGTGCTCTTTAGGAATGGGA +
Preference number: 4 (lower is better)
Translates to: ASPPGFAARPRGGERASTPITKR*CSLGMG
Trigger: TCCCATTCCTAAAGAGCACCATCGCTTTGTTATTGG...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp ACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGCCAGCGATGAAGGGGTaGAAAGCCTTCTCCACTTCT +
Preference number: 4 (lower is better)
Translates to: TLLSVSHSGVPVPEHSIRPAMKG*KAFSTS
Trigger: AGAAGTGGAGAAGGCTTTCCACCCCTTCATCGCTGG...CCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp TGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCACGGTTAACACTGGGTaGAGGGATGTTGATTCGCGT +
Preference number: 4 (lower is better)
Translates to: CETSGRGKSINNLRGSSCTVNTG*RDVDSR
Trigger: ACGCGAATCAACATCCCTCCACCCAGTGTTAACCGT...GCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GACACAGGAAGTCAACTCCTAGCCGCTGTGGAGCTCTGGTGTGAAGGTCAGAGTCTGCTGAACACCCTGTaGGTCTCCCTCAATTCGGAT +
Preference number: 4 (lower is better)
Translates to: DTGSQLLAAVELWCEGQSLLNTL*VSLNSD
Trigger: ATCCGAATTGAGGGAGACCCACAGGGTGTTCAGCAG...ACTCTGACCTTCACACCAGAGCTCCACAGCGGCTAGGAGTTGACTTCCTGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp AGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCATTGTGATCAGGTCCTaGTCCTTATCTTCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: SVSHSGVPVPEHSIRSRPIVIRS*SLSSAA
Trigger: GGCTGCTGAAGATAAGGACCAGGACCTGATCACAAT...GGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATATTGTGATCAGGTCCTaGTCCTTATCTTCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: QPTRLCCETSGRGKSINNIVIRS*SLSSAA
Trigger: GGCTGCTGAAGATAAGGACCAGGACCTGATCACAAT...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGAATGGCGGTGGTGTTTaGGGTCCACCAGCATATAGT +
Preference number: 4 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLNGGGV*GPPAYS
Trigger: ACTATATGCTGGTGGACCCCAAACACCACCGCCATT...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTCATCTCCATTCTCCTaGATGGAAGGCTCTACACTG +
Preference number: 4 (lower is better)
Translates to: QPTRLCCETSGRGKSINNSSPFS*MEGSTL
Trigger: CAGTGTAGAGCCTTCCATCCAGGAGAATGGAGATGA...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp TGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGATTTGGTCCTGGGGCTaGTTCCCATCATCCTTATCA +
Preference number: 4 (lower is better)
Translates to: CFTQWRACPRAQHQEQTLIWSWG*FPSSLS
Trigger: TGATAAGGATGATGGGAACCAGCCCCAGGACCAAAT...CAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp AGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGATGGTGATTTGGTCCTaGGGCTGGTTCCCATCATCC +
Preference number: 4 (lower is better)
Translates to: RLCCETSGRGKSINNLRGMVIWS*GWFPSS
Trigger: GGATGATGGGAACCAGCCCCAGGACCAAATCACCAT...CCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp ACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGATGGCGCTCCACTCTGTaGGAAGCGAATGTCCACCTT +
Preference number: 4 (lower is better)
Translates to: TRLCCETSGRGKSINNLRWRSTL*EANVHL
Trigger: AAGGTGGACATTCGCTTCCCACAGAGTGGAGCGCCA...TCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp ACAAGGAGGAAAAGACACTCCCACCCCTGCCCTAGGCTCCTCAACATCTTGGAGGCACCACAAAGCCTTTaGATGGTGCCCTGGACTCTT +
Preference number: 4 (lower is better)
Translates to: TRRKRHSHPCPRLLNILEAPQSL*MVPWTL
Trigger: AAGAGTCCAGGGCACCATCCAAAGGCTTTGTGGTGC...CTCCAAGATGTTGAGGAGCCTAGGGCAGGGGTGGGAGTGTCTTTTCCTCCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp AGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTCTTGAGCCCCAAAGCTaGGAAATTCTTCAGAGCTGC +
Preference number: 4 (lower is better)
Translates to: SPPGFAARPRGGERASTILEPQS*EILQSC
Trigger: GCAGCTCTGAAGAATTTCCCAGCTTTGGGGCTCAAG...AATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTCTTGAGCCCCAAAGCTaGGAAATTCTTCAGAGCTGC +
Preference number: 4 (lower is better)
Translates to: ARPRGGERASTIYEGPAALEPQS*EILQSC
Trigger: GCAGCTCTGAAGAATTTCCCAGCTTTGGGGCTCAAG...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
3UTR CAA 72 bp TGTTCCTTAGGACTGCATAAAGCATCCAGGTTATGCTaGCCAGAGCCTGCATGGTCAGGCTGGCTGGGAAGG +
Preference number: 4 (lower is better)
Translates to: CSLGLHKASRLC*PEPAWSGWLGR
Trigger: CCTTCCCAGCCAGCCTGACCATGCAGGCTCTGGCAAGCATAACCTGGATGCTTTATGCAGTCCTAAGGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTAAGGTGGCAACTTTaGTTTGTTGTGGAACCAGCC +
Preference number: 4 (lower is better)
Translates to: QPTRLCCETSGRGKSINNLRWQL*FVVEPA
Trigger: GGCTGGTTCCACAACAAATCAAAGTTGCCACCTTAA...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp TGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGTTAAGGTGGCAACTTTaGTTTGTTGTGGAACCAGCC +
Preference number: 4 (lower is better)
Translates to: CFTQWRACPRAQHQEQTLLRWQL*FVVEPA
Trigger: GGCTGGTTCCACAACAAATCAAAGTTGCCACCTTAA...CAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp ACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGGCTTCCCTGAGACCATaGTGGAGAGACCTTGATCTT +
Preference number: 4 (lower is better)
Translates to: TLLSVSHSGVPVPEHSIRASLRP*WRDLDL
Trigger: AAGATCAAGGTCTCTCCATCATGGTCTCAGGGAAGC...CCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp AAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGGGCATCCAGCTTCCCTaGGACCATGATGGAGAGACC +
Preference number: 4 (lower is better)
Translates to: KCSITLLSVSHSGVPVPEGIQLP*DHDGET
Trigger: GGTCTCTCCATCATGGTCTCAGGGAAGCTGGATGCC...CTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGCTCCTTCTCTCCAGTaGAGACGATTTCTGTACGGT +
Preference number: 4 (lower is better)
Translates to: QALLRDLGEGKEHQQFTRAPSLQ*RRFLYG
Trigger: ACCGTACAGAAATCGTCTTCACTGGAGAGAAGGAGC...CCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp TGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCACCTTTGGCATTTGCTaGGTGATTTTGGCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: CCETSGRGKSINNLRGSSTFGIC*VILARF
Trigger: GAACCTGGCCAAAATCACTCAGCAAATGCCAAAGGT...GCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACCTTTGGCATTTGCTaGGTGATTTTGGCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: AHQALLRDLGEGKEHQQFTFGIC*VILARF
Trigger: GAACCTGGCCAAAATCACTCAGCAAATGCCAAAGGT...AAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTTGTCCTCACCTTCTGTaGACTCAATGTGAACCTTTG +
Preference number: 4 (lower is better)
Translates to: VFHTVACLSQSTASGADPCPHLL*TQCEPL
Trigger: CAAAGGTTCACATTGAGTTCACAGAAGGTGAGGACA...AGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACACCAATGATTGTGCGATaGAATCTTTGCTCGATGATT +
Preference number: 4 (lower is better)
Translates to: ASPPGFAARPRGGERASTPMIVR*NLCSMI
Trigger: AATCATCGAGCAAAGATTTCATCGCACAATCATTGG...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTCCCCCTTTGCCAATaGGGAATTTGTGGTATTCTG +
Preference number: 4 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLLPLCQ*GICGIL
Trigger: CAGAATACCACAAATTCCTCATTGGCAAAGGGGGAG...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGCATTCCACTGTCACTTaGGCTTCCAGATCCTCAATG +
Preference number: 4 (lower is better)
Translates to: LGEGKEHQQFTRVQLLGQHSTVT*ASRSSM
Trigger: CATTGAGGATCTGGAAGCTCAAGTGACAGTGGAATG...CTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GACACAGGAAGTCAACTCCTAGCCGCTGTGGAGCTCTGGTGTGAAGGTCAGAGTGATCTGCTGGATTCTTaGACCTTTGGGACCCATGAC +
Preference number: 4 (lower is better)
Translates to: DTGSQLLAAVELWCEGQSDLLDS*TFGTHD
Trigger: GTCATGGGTCCCAAAGGTTCAAGAATCCAGCAGATC...ACTCTGACCTTCACACCAGAGCTCCACAGCGGCTAGGAGTTGACTTCCTGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp GCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTCATTGTAGTCCCGAGTaGTCTGCTGGATTCTTGAAC +
Preference number: 4 (lower is better)
Translates to: AHQALLRDLGEGKEHQQFHCSPE*SAGFLN
Trigger: GTTCAAGAATCCAGCAGATCACTCGGGACTACAATG...AAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp AGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCCTTTCCAGGATTTCTTaGAGTGAATTGCCCTTTGGC +
Preference number: 4 (lower is better)
Translates to: SVSHSGVPVPEHSIRSRPLSRIS*SELPFG
Trigger: GCCAAAGGGCAATTCACTGCAAGAAATCCTGGAAAG...GGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp CCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGTAAAACTCTTGGTTTaGTTCTCCTCAGCCAGGTGC +
Preference number: 4 (lower is better)
Translates to: PRGGERASTIYEGPAAGSVKLLV*FSSARC
Trigger: GCACCTGGCTGAGGAGAAGCAAACCAAGAGTTTTAC...TGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAACTCATCCATCATCTTaGGGATTCCACTTCCTTTTT +
Preference number: 4 (lower is better)
Translates to: ASPPGFAARPRGGERASTTHPSS*GFHFLF
Trigger: AAAAAGGAAGTGGAATCCGCAAGATGATGGATGAGT...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCATGTAAACTTGCAGTaGCTCACTGTCCACCACATC +
Preference number: 4 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLHVNLQ*LTVHHI
Trigger: GATGTGGTGGACAGTGAGGCACTGCAAGTTTACATG...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp GCCAGTCTCTACCTCCCCTTTCCCCCAAAGTCTCAAGCCACCCTAGTCCACTGTCATGTAAACTTGCAGTaGCTCACTGTCCACCACATC +
Preference number: 4 (lower is better)
Translates to: ASLYLPFPPKSQATLVHCHVNLQ*LTVHHI
Trigger: GATGTGGTGGACAGTGAGGCACTGCAAGTTTACATG...ACAGTGGACTAGGGTGGCTTGAGACTTTGGGGGAAAGGGGAGGTAGAGACTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp GTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTTCAGCAAAACTCTCTTaGGTCAAAACTGCAACGGAG +
Preference number: 4 (lower is better)
Translates to: VFHTVACLSQSTASGADPSAKLS*VKTATE
Trigger: CTCCGTTGCAGTTTTGACCCAAGAGAGTTTTGCTGA...AGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTCAGCAAAACTCTCTTaGGTCAAAACTGCAACGGAG +
Preference number: 4 (lower is better)
Translates to: QPTRLCCETSGRGKSINNSAKLS*VKTATE
Trigger: CTCCGTTGCAGTTTTGACCCAAGAGAGTTTTGCTGA...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GAAGGAACACCCAGCTCTGGCCCAGTCCCTGAATCATGTGGACTGAGGGAAAGCGGCATCCTTGTAGGTTaGAGGGTCATTTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: EGTPSSGPVPESCGLRESGILVG*RVIFLF
Trigger: GAAGAGGAAAATGACCCTCCAACCTACAAGGATGCC...GCTTTCCCTCAGTCCACATGATTCAGGGACTGGGCCAGAGCTGGGTGTTCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp CACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGGTTGATGATAACCTCTaGGAATTTGTCACGAATTTC +
Preference number: 4 (lower is better)
Translates to: HTRPAHQALLRDLGEGKEVDDNL*EFVTNF
Trigger: GAAATTCGTGACAAATTCCCAGAGGTTATCATCAAC...CTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGTTGATGATAACCTCTaGGAATTTGTCACGAATTTC +
Preference number: 4 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKVDDNL*EFVTNF
Trigger: GAAATTCGTGACAAATTCCCAGAGGTTATCATCAAC...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGTTGGCCAGATCTTTCTaGATAGACAGAATCCGGCTG +
Preference number: 4 (lower is better)
Translates to: LGEGKEHQQFTRVQLLGQLARSF*IDRIRL
Trigger: CAGCCGGATTCTGTCTATCCAGAAAGATCTGGCCAA...CTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp TCACGAAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCGCTTCCAGCTCCTTTTaGGCCTCACGGACAGCATCC +
Preference number: 4 (lower is better)
Translates to: SRNARLPCLVFHTVACLSASSSF*ASRTAS
Trigger: GGATGCTGTCCGTGAGGCCCAAAAGGAGCTGGAAGC...GGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp TGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCACATTCTCCAGGTTCTaGATCAATGCTTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: CETSGRGKSINNLRGSSCTFSRF*INASSS
Trigger: GGAGCTGGAAGCATTGATCCAGAACCTGGAGAATGT...GCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp ACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGTCGGGGGCTGGTACATaGATGTTCACCTCAAACTCA +
Preference number: 4 (lower is better)
Translates to: TLLSVSHSGVPVPEHSIRSGAGT*MFTSNS
Trigger: TGAGTTTGAGGTGAACATCCATGTACCAGCCCCCGA...CCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp GCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTATGATGGAGAGACCTTaGTCTTTAGCCAGAGAGAGT +
Preference number: 4 (lower is better)
Translates to: AHQALLRDLGEGKEHQQFMMERP*SLARES
Trigger: ACTCTCTCTGGCTAAAGATCAAGGTCTCTCCATCAT...AAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTATGATGGAGAGACCTTaGTCTTTAGCCAGAGAGAGT +
Preference number: 4 (lower is better)
Translates to: ARPRGGERASTIYEGPAAMMERP*SLARES
Trigger: ACTCTCTCTGGCTAAAGATCAAGGTCTCTCCATCAT...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATATAACATACTTGTGCTaGGACTTCTTCACCTCTACC +
Preference number: 4 (lower is better)
Translates to: QPTRLCCETSGRGKSINNITYLC*DFFTST
Trigger: GGTAGAGGTGAAGAAGTCTCAGCACAAGTATGTTAT...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CCAGTCCCTGAATCATGTGGACTGAGGGAAAGCACTGGCCTCCACCCTCAACTCTGTCCTCACCTTCTGTaGACTCAATGTGAACCTTTG +
Preference number: 4 (lower is better)
Translates to: PVPESCGLRESTGLHPQLCPHLL*TQCEPL
Trigger: CAAAGGTTCACATTGAGTTCACAGAAGGTGAGGACA...GAGTTGAGGGTGGAGGCCAGTGCTTTCCCTCAGTCCACATGATTCAGGGACTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp GCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTTGTCCTCACCTTCTGTaGACTCAATGTGAACCTTTG +
Preference number: 4 (lower is better)
Translates to: AHQALLRDLGEGKEHQQFCPHLL*TQCEPL
Trigger: CAAAGGTTCACATTGAGTTCACAGAAGGTGAGGACA...AAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp TGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCCTCCGCTCTTTCCAATaGGGTGTCTGTGGAATTTAT +
Preference number: 4 (lower is better)
Translates to: CETSGRGKSINNLRGSSCLRSFQ*GVCGIY
Trigger: ATAAATTCCACAGACACCTCATTGGAAAGAGCGGAG...GCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTGAAATCTTTGCTCGATaGTTAGATCCTTGGTGCGCT +
Preference number: 4 (lower is better)
Translates to: SPPGFAARPRGGERASTIEIFAR*LDPWCA
Trigger: AGCGCACCAAGGATCTAATCATCGAGCAAAGATTTC...AATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCGCCTCCTTTCCCGATaGTATTCTTGTGAAACTGTT +
Preference number: 4 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLRLLSR*YSCETV
Trigger: AACAGTTTCACAAGAATATCATCGGGAAAGGAGGCG...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGCTCCCCCTTTGCCAATaGGGAATTTGTGGTATTCTG +
Preference number: 4 (lower is better)
Translates to: QALLRDLGEGKEHQQFTRLPLCQ*GICGIL
Trigger: CAGAATACCACAAATTCCTCATTGGCAAAGGGGGAG...CCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp AGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGCATTCCACTGTCACTTaGGCTTCCAGATCCTCAATG +
Preference number: 4 (lower is better)
Translates to: RLCCETSGRGKSINNLRGHSTVT*ASRSSM
Trigger: CATTGAGGATCTGGAAGCTCAAGTGACAGTGGAATG...CCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CGAAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGCCCATGACCGATCGGTaGAACTTCTGGGGTATAGCA +
Preference number: 4 (lower is better)
Translates to: RNARLPCLVFHTVACLSQPMTDR*NFWGIA
Trigger: TGCTATACCCCAGAAGTTTCACCGATCGGTCATGGG...CTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp GACACAGGAAGTCAACTCCTAGCCGCTGTGGAGCTCTGGTGTGAAGGTCAGAGTCATTGTAGTCCCGAGTaGTCTGCTGGATTCTTGAAC +
Preference number: 4 (lower is better)
Translates to: DTGSQLLAAVELWCEGQSHCSPE*SAGFLN
Trigger: GTTCAAGAATCCAGCAGATCACTCGGGACTACAATG...ACTCTGACCTTCACACCAGAGCTCCACAGCGGCTAGGAGTTGACTTCCTGTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp TTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGAGCTCTATCTGGGAACTTaGTTTGAACATTGTAGTCCC +
Preference number: 4 (lower is better)
Translates to: FHTVACLSQSTASGADPELYLGT*FEHCSP
Trigger: GGGACTACAATGTTCAAATCAAGTTCCCAGATAGAG...CTCAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp CGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCAACTCTCCAAGCAAGCTaGTTTCTCAGGAAGTGGAGG +
Preference number: 4 (lower is better)
Translates to: RLPCLVFHTVACLSQSTATLQAS*FLRKWR
Trigger: CCTCCACTTCCTGAGAAAGCAGCTTGCTTGGAGAGT...TGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp CACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGTTTAGTTCTAAGTCTTaGAGTTTCTCTCCGTTTTTG +
Preference number: 4 (lower is better)
Translates to: HTRPAHQALLRDLGEGKEFSSKS*SFSPFL
Trigger: CAAAAACGGAGAGAAACTGCAAGACTTAGAACTAAA...CTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp CTAGCCGCTGTGGAGCTCTGGTGTGAAGGTCAGAGTGCTGACTACATGCTGGGTCTTTCCAGGATTTCTTaGAGTGAATTGCCCTTTGGC +
Preference number: 4 (lower is better)
Translates to: LAAVELWCEGQSADYMLGLSRIS*SELPFG
Trigger: GCCAAAGGGCAATTCACTGCAAGAAATCCTGGAAAG...ACCCAGCATGTAGTCAGCACTCTGACCTTCACACCAGAGCTCCACAGCGGCTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp CGAAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGTCACAGTCTCAGAGATaGTGTCGGAGGGTGGGATCT +
Preference number: 4 (lower is better)
Translates to: RNARLPCLVFHTVACLSQSQSQR*CRRVGS
Trigger: AGATCCCACCCTCCGACAGCATCTCTGAGACTGTGA...CTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp ACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGGTAAAACTCTTGGTTTaGTTCTCCTCAGCCAGGTGC +
Preference number: 4 (lower is better)
Translates to: TLLSVSHSGVPVPEHSIRVKLLV*FSSARC
Trigger: GCACCTGGCTGAGGAGAAGCAAACCAAGAGTTTTAC...CCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp CTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGTCCTCAGAAACCATCTaGTCAAGCTCACCCACAATT +
Preference number: 4 (lower is better)
Translates to: LGEGKEHQQFTRVQLLGQSSETI*SSSPTI
Trigger: AATTGTGGGTGAGCTTGAGCAGATGGTTTCTGAGGA...CTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGATTAGGAGGACTTCATaGCGAGCTTTCTCGATGCCT +
Preference number: 4 (lower is better)
Translates to: QALLRDLGEGKEHQQFTRIRRTS*RAFSMP
Trigger: AGGCATCGAGAAAGCTCGCCATGAAGTCCTCCTAAT...CCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGATTAGGAGGACTTCATaGCGAGCTTTCTCGATGCCT +
Preference number: 4 (lower is better)
Translates to: RLCCETSGRGKSINNLRGIRRTS*RAFSMP
Trigger: AGGCATCGAGAAAGCTCGCCATGAAGTCCTCCTAAT...CCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp ACAAGGAGGAAAAGACACTCCCACCCCTGCCCTAGGCTCCTCAACATCTTGGAGTTGGCCAGATCTTTCTaGATAGACAGAATCCGGCTG +
Preference number: 4 (lower is better)
Translates to: TRRKRHSHPCPRLLNILELARSF*IDRIRL
Trigger: CAGCCGGATTCTGTCTATCCAGAAAGATCTGGCCAA...CTCCAAGATGTTGAGGAGCCTAGGGCAGGGGTGGGAGTGTCTTTTCCTCCTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGGAGAGTTGTGTAGTTTaGCAGGAATTGAGACCTCCA +
Preference number: 4 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLESCVV*QELRPP
Trigger: TGGAGGTCTCAATTCCTGCCAAACTACACAACTCTC...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGAATTTGTGGTATTCTaGCTTGGCTCGGATGTCCAC +
Preference number: 4 (lower is better)
Translates to: QALLRDLGEGKEHQQFTREFVVF*LGSDVH
Trigger: GTGGACATCCGAGCCAAGCCAGAATACCACAAATTC...CCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGGAATTTGTGGTATTCTaGCTTGGCTCGGATGTCCAC +
Preference number: 4 (lower is better)
Translates to: RLCCETSGRGKSINNLRGEFVVF*LGSDVH
Trigger: GTGGACATCCGAGCCAAGCCAGAATACCACAAATTC...CCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp TCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGATCATCTCCATTCTCCTaGATGGAAGGCTCTACACTG +
Preference number: 4 (lower is better)
Translates to: SGRGKSINNLRGSSCWVRSSPFS*MEGSTL
Trigger: CAGTGTAGAGCCTTCCATCCAGGAGAATGGAGATGA...TCTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GACACAGGAAGTCAACTCCTAGCCGCTGTGGAGCTCTGGTGTGAAGGTCAGAGTATTTGGTCCTGGGGCTaGTTCCCATCATCCTTATCA +
Preference number: 4 (lower is better)
Translates to: DTGSQLLAAVELWCEGQSIWSWG*FPSSLS
Trigger: TGATAAGGATGATGGGAACCAGCCCCAGGACCAAAT...ACTCTGACCTTCACACCAGAGCTCCACAGCGGCTAGGAGTTGACTTCCTGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp GACACAGGAAGTCAACTCCTAGCCGCTGTGGAGCTCTGGTGTGAAGGTCAGAGTCACACGGTGATCCAGTaGAACATCCTCAGAAACCAT +
Preference number: 4 (lower is better)
Translates to: DTGSQLLAAVELWCEGQSHTVIQ*NILRNH
Trigger: ATGGTTTCTGAGGATGTTCCACTGGATCACCGTGTG...ACTCTGACCTTCACACCAGAGCTCCACAGCGGCTAGGAGTTGACTTCCTGTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp ACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGATTCCTCCACATTCTCTaGGAGTCCTGTCACAGTGAC +
Preference number: 4 (lower is better)
Translates to: TRLCCETSGRGKSINNLRFLHIL*ESCHSD
Trigger: GTCACTGTGACAGGACTCCCAGAGAATGTGGAGGAA...TCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp ACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGACTTGAGCCCCAAAGCTaGGAAATTCTTCAGAGCTGC +
Preference number: 4 (lower is better)
Translates to: TRLCCETSGRGKSINNLRLEPQS*EILQSC
Trigger: GCAGCTCTGAAGAATTTCCCAGCTTTGGGGCTCAAG...TCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCACACCAGTCCTCTGCATaGTCTCAAGGCAGATTTTTG +
Preference number: 4 (lower is better)
Translates to: RLPCLVFHTVACLSQSTAHQSSA*SQGRFL
Trigger: CAAAAATCTGCCTTGAGATCATGCAGAGGACTGGTG...TGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCAACCTTTGGCATTTGCTaGGTGATTTTGGCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: RLPCLVFHTVACLSQSTATFGIC*VILARF
Trigger: GAACCTGGCCAAAATCACTCAGCAAATGCCAAAGGT...TGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGCTCCGCTCTTTCCAATaGGGTGTCTGTGGAATTTAT +
Preference number: 4 (lower is better)
Translates to: QALLRDLGEGKEHQQFTRLRSFQ*GVCGIY
Trigger: ATAAATTCCACAGACACCTCATTGGAAAGAGCGGAG...CCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CGAAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGGGCCCTTTGTGCCAATaGGAGAGTTGTGTAGTTTGG +
Preference number: 4 (lower is better)
Translates to: RNARLPCLVFHTVACLSQGPLCQ*ESCVVW
Trigger: CCAAACTACACAACTCTCTCATTGGCACAAAGGGCC...CTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp ACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGATCCTCAATGATTTCCTaGATGCGTTTCTTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: TRLCCETSGRGKSINNLRSSMIS*MRFLAA
Trigger: GGCAGCCAAGAAACGCATTCAGGAAATCATTGAGGA...TCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGCTTCCAGATCCTCAATaGTTTCCTGAATGCGTTTCT +
Preference number: 4 (lower is better)
Translates to: LGEGKEHQQFTRVQLLGQLPDPQ*FPECVS
Trigger: AGAAACGCATTCAGGAAATCATTGAGGATCTGGAAG...CTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTTCCAGATCCTCAATaGTTTCCTGAATGCGTTTCT +
Preference number: 4 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLLPDPQ*FPECVS
Trigger: AGAAACGCATTCAGGAAATCATTGAGGATCTGGAAG...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp TTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGAGATAACAAAGCGATGGTaGTCTTTAGGAATGGGAACA +
Preference number: 4 (lower is better)
Translates to: FHTVACLSQSTASGADPEITKRW*SLGMGT
Trigger: TGTTCCCATTCCTAAAGAGCACCATCGCTTTGTTAT...CTCAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp CCAGTCCCTGAATCATGTGGACTGAGGGAAAGCACTGGCCTCCACCCTCAACTCATTTTGGCCAGGTTCTaGCCTTTCTTACCAATGATG +
Preference number: 4 (lower is better)
Translates to: PVPESCGLRESTGLHPQLILARF*PFLPMM
Trigger: CATCATTGGTAAGAAAGGGCAGAACCTGGCCAAAAT...GAGTTGAGGGTGGAGGCCAGTGCTTTCCCTCAGTCCACATGATTCAGGGACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp CTAGCCGCTGTGGAGCTCTGGTGTGAAGGTCAGAGTGCTGACTACATGCTGGGTGGTCAATCTTGGTGTTaGTCTCTTCACGGATCTTTT +
Preference number: 4 (lower is better)
Translates to: LAAVELWCEGQSADYMLGGQSWC*SLHGSF
Trigger: AAAAGATCCGTGAAGAGAGCAACACCAAGATTGACC...ACCCAGCATGTAGTCAGCACTCTGACCTTCACACCAGAGCTCCACAGCGGCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp GCCAGTCTCTACCTCCCCTTTCCCCCAAAGTCTCAAGCCACCCTAGTCCACTGTGGTCAATCTTGGTGTTaGTCTCTTCACGGATCTTTT +
Preference number: 4 (lower is better)
Translates to: ASLYLPFPPKSQATLVHCGQSWC*SLHGSF
Trigger: AAAAGATCCGTGAAGAGAGCAACACCAAGATTGACC...ACAGTGGACTAGGGTGGCTTGAGACTTTGGGGGAAAGGGGAGGTAGAGACTGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGGGTCAATCTTGGTGTTaGTCTCTTCACGGATCTTTT +
Preference number: 4 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLGQSWC*SLHGSF
Trigger: AAAAGATCCGTGAAGAGAGCAACACCAAGATTGACC...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
3UTR CAA 72 bp TTCTCAGCCCACTCTATCACCAGGACATCTGACCTCTaGCTGTCCGATACCATGCCTTCCTCCTATCCTGAA +
Preference number: 4 (lower is better)
Translates to: FSAHSITRTSDL*LSDTMPSSYPE
Trigger: TTCAGGATAGGAGGAAGGCATGGTATCGGACAGCAAGAGGTCAGATGTCCTGGTGATAGAGTGGGCTGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp TTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGAGATTTATGGTCAATGTTaGTCTCTACATAGTCCATCC +
Preference number: 4 (lower is better)
Translates to: FHTVACLSQSTASGADPEIYGQC*SLHSPS
Trigger: GGATGGACTATGTAGAGATCAACATTGACCATAAAT...CTCAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGCACCTTTCTGCCCAATaGTTGTGCGATGAAATCTTT +
Preference number: 4 (lower is better)
Translates to: QALLRDLGEGKEHQQFTRHLSAQ*LCDEIF
Trigger: AAAGATTTCATCGCACAATCATTGGGCAGAAAGGTG...CCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGCATTCTTGGGGCCTCTaGGTTGTACAATATCACTTT +
Preference number: 4 (lower is better)
Translates to: QALLRDLGEGKEHQQFTRHSWGL*VVQYHF
Trigger: AAAGTGATATTGTACAACTCAGAGGCCCCAAGAATG...CCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp TCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGACTTCCAGATCCTCAATaGTTTCCTGAATGCGTTTCT +
Preference number: 4 (lower is better)
Translates to: SGRGKSINNLRGSSCWVRLPDPQ*FPECVS
Trigger: AGAAACGCATTCAGGAAATCATTGAGGATCTGGAAG...TCTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp GCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTGATCTTTTTAATGTTTaGGCCTCCTTTCCCGATGAT +
Preference number: 4 (lower is better)
Translates to: AHQALLRDLGEGKEHQQFDLFNV*ASFPDD
Trigger: ATCATCGGGAAAGGAGGCGCAAACATTAAAAAGATC...AAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp CCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAACTCATCCATCATCTTaGGGATTCCACTTCCTTTTT +
Preference number: 4 (lower is better)
Translates to: PRGGERASTIYEGPAAGSTHPSS*GFHFLF
Trigger: AAAAAGGAAGTGGAATCCGCAAGATGATGGATGAGT...TGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR GCA 90 bp ATGGAAGACATTCAACAAGGAGGAAAAGACACTCCCACCCCTGCCCTAGGCTCCTCCTCAGAAACCATCTaGTCAAGCTCACCCACAATT +
Preference number: 4 (lower is better)
Translates to: MEDIQQGGKDTPTPALGSSSETI*SSSPTI
Trigger: AATTGTGGGTGAGCTTGAGCAGATGGTTTCTGAGGA...GGAGCCTAGGGCAGGGGTGGGAGTGTCTTTTCCTCCTTGTTGAATGTCTTCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp CGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGCAAAACTCTCTTaGGTCAAAACTGCAACGGAG +
Preference number: 4 (lower is better)
Translates to: RLPCLVFHTVACLSQSTASAKLS*VKTATE
Trigger: CTCCGTTGCAGTTTTGACCCAAGAGAGTTTTGCTGA...TGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp AGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGCCAATAACAAAGCGATaGTGCTCTTTAGGAATGGGA +
Preference number: 4 (lower is better)
Translates to: RLCCETSGRGKSINNLRGPITKR*CSLGMG
Trigger: TCCCATTCCTAAAGAGCACCATCGCTTTGTTATTGG...CCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp CCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCACCAATGAGGTGTCTGTaGAATTTATGGTCAATGTTG +
Preference number: 4 (lower is better)
Translates to: PRGGERASTIYEGPAAGSPMRCL*NLWSML
Trigger: CAACATTGACCATAAATTCCACAGACACCTCATTGG...TGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp TGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCCCAATGAGGTGTCTGTaGAATTTATGGTCAATGTTG +
Preference number: 4 (lower is better)
Translates to: CCETSGRGKSINNLRGSSPMRCL*NLWSML
Trigger: CAACATTGACCATAAATTCCACAGACACCTCATTGG...GCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp AAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGAATGGCGGTGGTGTTTaGGGTCCACCAGCATATAGT +
Preference number: 4 (lower is better)
Translates to: KCSITLLSVSHSGVPVPENGGGV*GPPAYS
Trigger: ACTATATGCTGGTGGACCCCAAACACCACCGCCATT...CTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp TGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGTCCTTATCAGGAAATTaGATGTTCACTTCATGTTCC +
Preference number: 4 (lower is better)
Translates to: CFTQWRACPRAQHQEQTLSLSGN*MFTSCS
Trigger: GGAACATGAAGTGAACATCCAATTTCCTGATAAGGA...CAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGATTTATGGTCAATGTTaGTCTCTACATAGTCCATCC +
Preference number: 4 (lower is better)
Translates to: LGEGKEHQQFTRVQLLGQIYGQC*SLHSPS
Trigger: GGATGGACTATGTAGAGATCAACATTGACCATAAAT...CTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR TCA 90 bp CGAAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGGAAATCTTTGCTCGATaGTTAGATCCTTGGTGCGCT +
Preference number: 4 (lower is better)
Translates to: RNARLPCLVFHTVACLSQEIFAR*LDPWCA
Trigger: AGCGCACCAAGGATCTAATCATCGAGCAAAGATTTC...CTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CTGTCCGATACCATGCCTTCCTCCTATCCTGAAGCCTGTGCTAAGCAGATTTTGCATTGTAGTCCCGAGTaGTCTGCTGGATTCTTGAAC +
Preference number: 4 (lower is better)
Translates to: LSDTMPSSYPEACAKQILHCSPE*SAGFLN
Trigger: GTTCAAGAATCCAGCAGATCACTCGGGACTACAATG...CAAAATCTGCTTAGCACAGGCTTCAGGATAGGAGGAAGGCATGGTATCGGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp TCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATTTTGGCCAGGTTCTaGCCTTTCTTACCAATGATG +
Preference number: 4 (lower is better)
Translates to: SITLLSVSHSGVPVPEHSILARF*PFLPMM
Trigger: CATCATTGGTAAGAAAGGGCAGAACCTGGCCAAAAT...GCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp AAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGATTACTGGGGTCATCTaGGCGTGGGATCTGGATTTT +
Preference number: 4 (lower is better)
Translates to: KCSITLLSVSHSGVPVPEITGVI*AWDLDF
Trigger: AAAATCCAGATCCCACGCCCAGATGACCCCAGTAAT...CTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp CCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCACTCAATGTGAACCTTTaGCATTTGCTGAGTGATTTT +
Preference number: 4 (lower is better)
Translates to: PRGGERASTIYEGPAAGSLNVNL*HLLSDF
Trigger: AAAATCACTCAGCAAATGCCAAAGGTTCACATTGAG...TGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACAGACACTTTGTACTaGTCTTTGATTCTGTTGATG +
Preference number: 4 (lower is better)
Translates to: AHQALLRDLGEGKEHQQFTDTLY*SLILLM
Trigger: CATCAACAGAATCAAAGACCAGTACAAAGTGTCTGT...AAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTACAGACACTTTGTACTaGTCTTTGATTCTGTTGATG +
Preference number: 4 (lower is better)
Translates to: ARPRGGERASTIYEGPAATDTLY*SLILLM
Trigger: CATCAACAGAATCAAAGACCAGTACAAAGTGTCTGT...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp TCACGAAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCACATTCTCCAGGTTCTaGATCAATGCTTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: SRNARLPCLVFHTVACLSTFSRF*INASSS
Trigger: GGAGCTGGAAGCATTGATCCAGAACCTGGAGAATGT...GGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp CTGTCCGATACCATGCCTTCCTCCTATCCTGAAGCCTGTGCTAAGCAGATTTTGACATTCTCCAGGTTCTaGATCAATGCTTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LSDTMPSSYPEACAKQILTFSRF*INASSS
Trigger: GGAGCTGGAAGCATTGATCCAGAACCTGGAGAATGT...CAAAATCTGCTTAGCACAGGCTTCAGGATAGGAGGAAGGCATGGTATCGGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp CTGTCCGATACCATGCCTTCCTCCTATCCTGAAGCCTGTGCTAAGCAGATTTTGCTCCATTCTCCTGGATaGAAGGCTCTACACTGTGAA +
Preference number: 4 (lower is better)
Translates to: LSDTMPSSYPEACAKQILLHSPG*KALHCE
Trigger: TTCACAGTGTAGAGCCTTCCATCCAGGAGAATGGAG...CAAAATCTGCTTAGCACAGGCTTCAGGATAGGAGGAAGGCATGGTATCGGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CAA 72 bp AGATCTCCTTCAGATAGCTGTGCTCCCTGCTTTGGGTaGTTTTCATTCTGCCTTCCCTGTGAATCCACCCTA +
Preference number: 4 (lower is better)
Translates to: RSPSDSCAPCFG*FSFCLPCESTL
Trigger: TAGGGTGGATTCACAGGGAAGGCAGAATGAAAACAACCCAAAGCAGGGAGCACAGCTATCTGAAGGAGATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CTGAACAAAGTAGATGTTCTTTTCCCATCTCAGTATCGTTCTTCTAAGTGGGTACAGAGCGTGGGAAGCTaGCCATCACCCCGCCATACT +
Preference number: 4 (lower is better)
Translates to: LNKVDVLFPSQYRSSKWVQSVGS*PSPRHT
Trigger: AGTATGGCGGGGTGATGGTCAGCTTCCCACGCTCTG...TACCCACTTAGAAGAACGATACTGAGATGGGAAAAGAACATCTACTTTGTTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp AGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCTTATCAGGAAATTaGATGTTCACTTCATGTTCC +
Preference number: 4 (lower is better)
Translates to: RLCCETSGRGKSINNLRGSLSGN*MFTSCS
Trigger: GGAACATGAAGTGAACATCCAATTTCCTGATAAGGA...CCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp TCTTGGAGGCTGCAGAGAGGTGACCTGGGTACAGTCAATTTCATAGTCCTTATTATTACTGGGGTCATCTaGGCGTGGGATCTGGATTTT +
Preference number: 4 (lower is better)
Translates to: SWRLQRGDLGTVNFIVLIITGVI*AWDLDF
Trigger: AAAATCCAGATCCCACGCCCAGATGACCCCAGTAAT...AATAAGGACTATGAAATTGACTGTACCCAGGTCACCTCTCTGCAGCCTCCAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp ACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGACTCAATGTGAACCTTTaGCATTTGCTGAGTGATTTT +
Preference number: 4 (lower is better)
Translates to: TRLCCETSGRGKSINNLRLNVNL*HLLSDF
Trigger: AAAATCACTCAGCAAATGCCAAAGGTTCACATTGAG...TCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp ACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAACAGACACTTTGTACTaGTCTTTGATTCTGTTGATG +
Preference number: 4 (lower is better)
Translates to: TRLCCETSGRGKSINNLRTDTLY*SLILLM
Trigger: CATCAACAGAATCAAAGACCAGTACAAAGTGTCTGT...TCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CCA 90 bp ATGGAAGACATTCAACAAGGAGGAAAAGACACTCCCACCCCTGCCCTAGGCTCCTCCTTATCAGGAAATTaGATGTTCACTTCATGTTCC +
Preference number: 4 (lower is better)
Translates to: MEDIQQGGKDTPTPALGSSLSGN*MFTSCS
Trigger: GGAACATGAAGTGAACATCCAATTTCCTGATAAGGA...GGAGCCTAGGGCAGGGGTGGGAGTGTCTTTTCCTCCTTGTTGAATGTCTTCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp TCTTGGAGGCTGCAGAGAGGTGACCTGGGTACAGTCAATTTCATAGTCCTTATTCACACGGTGATCCAGTaGAACATCCTCAGAAACCAT +
Preference number: 4 (lower is better)
Translates to: SWRLQRGDLGTVNFIVLIHTVIQ*NILRNH
Trigger: ATGGTTTCTGAGGATGTTCCACTGGATCACCGTGTG...AATAAGGACTATGAAATTGACTGTACCCAGGTCACCTCTCTGCAGCCTCCAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CAA 72 bp GGAAAAGATCTCCTTCAGATAGCTGTGCTCCCTGCTTaGGGTTGTTTTCATTCTGCCTTCCCTGTGAATCCA +
Preference number: 4 (lower is better)
Translates to: GKDLLQIAVLPA*GCFHSAFPVNP
Trigger: TGGATTCACAGGGAAGGCAGAATGAAAACAACCCAAAGCAGGGAGCACAGCTATCTGAAGGAGATCTTTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CAA 72 bp AGAATCACCAGAAATGTCTACATCACAAGAAGAGCCTaGGGTGGCACTAACCCACATGAGAGTACTACCACA +
Preference number: 4 (lower is better)
Translates to: RITRNVYITRRA*GGTNPHESTTT
Trigger: TGTGGTAGTACTCTCATGTGGGTTAGTGCCACCCAAGGCTCTTCTTGTGATGTAGACATTTCTGGTGATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
3UTR CAA 72 bp GGGACTGGTTCCATCCAAAGGGAACTGAAGTTAGACTaGGGAAAGCAATTCTGGATCCACTTAGGATTAGAG +
Preference number: 4 (lower is better)
Translates to: GTGSIQRELKLD*GKQFWIHLGLE
Trigger: CTCTAATCCTAAGTGGATCCAGAATTGCTTTCCCAAGTCTAACTTCAGTTCCCTTTGGATGGAACCAGTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CCACATGAGAGTACTACCACACTGGCTGAGGTAGAAAGAAGGCAACTGAACAAGCCAATGATTGTGCGATaGAATCTTTGCTCGATGATT +
Preference number: 4 (lower is better)
Translates to: PHESTTTLAEVERRQLNKPMIVR*NLCSMI
Trigger: AATCATCGAGCAAAGATTTCATCGCACAATCATTGG...CTTGTTCAGTTGCCTTCTTTCTACCTCAGCCAGTGTGGTAGTACTCTCATGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp TCCACCCTCAACTCAATGGCAAGCCCAGAATCACCAGAAATGTCTACATCACAACACCTTTCTGCCCAATaGTTGTGCGATGAAATCTTT +
Preference number: 4 (lower is better)
Translates to: STLNSMASPESPEMSTSQHLSAQ*LCDEIF
Trigger: AAAGATTTCATCGCACAATCATTGGGCAGAAAGGTG...TTGTGATGTAGACATTTCTGGTGATTCTGGGCTTGCCATTGAGTTGAGGGTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp CGAAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGTTTAGTTCTAAGTCTTaGAGTTTCTCTCCGTTTTTG +
Preference number: 4 (lower is better)
Translates to: RNARLPCLVFHTVACLSQFSSKS*SFSPFL
Trigger: CAAAAACGGAGAGAAACTGCAAGACTTAGAACTAAA...CTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp TCACGAAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCGTTGATGATAACCTCTaGGAATTTGTCACGAATTTC +
Preference number: 4 (lower is better)
Translates to: SRNARLPCLVFHTVACLSVDDNL*EFVTNF
Trigger: GAAATTCGTGACAAATTCCCAGAGGTTATCATCAAC...GGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR GCA 90 bp ACATGTGGGACTGGTTCCATCCAAAGGGAACTGAAGTTAGACTTGGGAAAGCAAATAACAAAGCGATGGTaGTCTTTAGGAATGGGAACA +
Preference number: 4 (lower is better)
Translates to: TCGTGSIQRELKLDLGKQITKRW*SLGMGT
Trigger: TGTTCCCATTCCTAAAGAGCACCATCGCTTTGTTAT...TTGCTTTCCCAAGTCTAACTTCAGTTCCCTTTGGATGGAACCAGTCCCACATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp TCCATCCAAAGGGAACTGAAGTTAGACTTGGGAAAGCAATTCTGGATCCACTTACCAATAACAAAGCGATaGTGCTCTTTAGGAATGGGA +
Preference number: 4 (lower is better)
Translates to: SIQRELKLDLGKQFWIHLPITKR*CSLGMG
Trigger: TCCCATTCCTAAAGAGCACCATCGCTTTGTTATTGG...TAAGTGGATCCAGAATTGCTTTCCCAAGTCTAACTTCAGTTCCCTTTGGATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp CTGAACAAAGTAGATGTTCTTTTCCCATCTCAGTATCGTTCTTCTAAGTGGGTAATTGTGATCAGGTCCTaGTCCTTATCTTCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: LNKVDVLFPSQYRSSKWVIVIRS*SLSSAA
Trigger: GGCTGCTGAAGATAAGGACCAGGACCTGATCACAAT...TACCCACTTAGAAGAACGATACTGAGATGGGAAAAGAACATCTACTTTGTTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR TCA 90 bp CTGAACAAAGTAGATGTTCTTTTCCCATCTCAGTATCGTTCTTCTAAGTGGGTAATAACATACTTGTGCTaGGACTTCTTCACCTCTACC +
Preference number: 4 (lower is better)
Translates to: LNKVDVLFPSQYRSSKWVITYLC*DFFTST
Trigger: GGTAGAGGTGAAGAAGTCTCAGCACAAGTATGTTAT...TACCCACTTAGAAGAACGATACTGAGATGGGAAAAGAACATCTACTTTGTTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CCA 90 bp GAACAGCTTAGGATAGGGCTTACATCTACAGCACTTAGCAATAAAAGGAGATGTCTCAATGTGAACCTTTaGCATTTGCTGAGTGATTTT +
Preference number: 4 (lower is better)
Translates to: EQLRIGLTSTALSNKRRCLNVNL*HLLSDF
Trigger: AAAATCACTCAGCAAATGCCAAAGGTTCACATTGAG...ACATCTCCTTTTATTGCTAAGTGCTGTAGATGTAAGCCCTATCCTAAGCTGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp GGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGCCAGGGTCGGTCTCCTaGGCCTCTCTGCCCTCTCCA +
Preference number: 5 (lower is better)
Translates to: GEAATQGQPTRLCCETSGPGSVS*ASLPSP
Trigger: TGGAGAGGGCAGAGAGGCCAAGGAGACCGACCCTGG...CCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAACCAGGGTCGGTCTCCTaGGCCTCTCTGCCCTCTCCA +
Preference number: 5 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKPGSVS*ASLPSP
Trigger: TGGAGAGGGCAGAGAGGCCAAGGAGACCGACCCTGG...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCCCAGGGTCGGTCTCCTaGGCCTCTCTGCCCTCTCCA +
Preference number: 5 (lower is better)
Translates to: RPGEAATQGQPTRLCCETPGSVS*ASLPSP
Trigger: TGGAGAGGGCAGAGAGGCCAAGGAGACCGACCCTGG...GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGTGCTTCCAGCTCCTTTaGGGCCTCACGGACAGCATC +
Preference number: 5 (lower is better)
Translates to: SSHTRPAHQALLRDLGEGCFQLL*GLTDSI
Trigger: GATGCTGTCCGTGAGGCCCAAAAGGAGCTGGAAGCA...CCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCGTCACAGTGACGCAATaGGGGTCTGGCGCTCCACTC +
Preference number: 5 (lower is better)
Translates to: RPGEAATQGQPTRLCCETVTVTQ*GSGAPL
Trigger: GAGTGGAGCGCCAGACCCCAATTGCGTCACTGTGAC...GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGTCACCCACAAGTCTGTaGTACGGCCCAGCGATGAAG +
Preference number: 5 (lower is better)
Translates to: HTRPAHQALLRDLGEGKESPTSL*YGPAMK
Trigger: CTTCATCGCTGGGCCGTACAACAGACTTGTGGGTGA...CTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACTCACCCACAAGTCTGTaGTACGGCCCAGCGATGAAG +
Preference number: 5 (lower is better)
Translates to: GQPTRLCCETSGRGKSINSPTSL*YGPAMK
Trigger: CTTCATCGCTGGGCCGTACAACAGACTTGTGGGTGA...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGTTGTGGTATTCTGGCTaGGCTCGGATGTCCACAGTA +
Preference number: 5 (lower is better)
Translates to: SSHTRPAHQALLRDLGEGLWYSG*ARMSTV
Trigger: TACTGTGGACATCCGAGCCAAGCCAGAATACCACAA...CCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCATGCTTCCAGCTCCTTTaGGGCCTCACGGACAGCATC +
Preference number: 5 (lower is better)
Translates to: KASPPGFAARPRGGERASCFQLL*GLTDSI
Trigger: GATGCTGTCCGTGAGGCCCAAAAGGAGCTGGAAGCA...TGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGATTTTCCGGATGGCTTaGCCCCGGGCACCAATGATT +
Preference number: 5 (lower is better)
Translates to: KQPHKASPPGFAARPRGGIFRMA*PRAPMI
Trigger: AATCATTGGTGCCCGGGGCAAAGCCATCCGGAAAAT...CCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCGTGATGACAGAGGCCTaGATGGGCCGGATCTTGTTA +
Preference number: 5 (lower is better)
Translates to: RPGEAATQGQPTRLCCETVMTEA*MGRILL
Trigger: TAACAAGATCCGGCCCATCAAGGCCTCTGTCATCAC...GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGGCTGGGTCTGGAAAGTaGATGATAACCTCTGGGAAT +
Preference number: 5 (lower is better)
Translates to: SSHTRPAHQALLRDLGEGAGSGK*MITSGN
Trigger: ATTCCCAGAGGTTATCATCAACTTTCCAGACCCAGC...CCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGATTTTCCGGATGGCTTaGCCCCGGGCACCAATGATT +
Preference number: 5 (lower is better)
Translates to: HTRPAHQALLRDLGEGKEIFRMA*PRAPMI
Trigger: AATCATTGGTGCCCGGGGCAAAGCCATCCGGAAAAT...CTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGCATGATGGAGAGACCTaGATCTTTAGCCAGAGAGAG +
Preference number: 5 (lower is better)
Translates to: KQPHKASPPGFAARPRGGHDGET*IFSQRE
Trigger: CTCTCTCTGGCTAAAGATCAAGGTCTCTCCATCATG...CCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCTAGCAACAATGTCTTaGCGGGCTTTCATGACGGCA +
Preference number: 5 (lower is better)
Translates to: HTRPAHQALLRDLGEGKELATMS*RAFMTA
Trigger: TGCCGTCATGAAAGCCCGCAAAGACATTGTTGCTAG...CTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGTTCTCGATGCCTTCTTaGGTGCCAGTGATCTTGATC +
Preference number: 5 (lower is better)
Translates to: EAATQGQPTRLCCETSGRFSMPS*VPVILI
Trigger: GATCAAGATCACTGGCACCAAAGAAGGCATCGAGAA...CCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGTCGATGATTAGATCCTaGGTGCGCTCATTTTCCATG +
Preference number: 5 (lower is better)
Translates to: SSHTRPAHQALLRDLGEGSMIRS*VRSFSM
Trigger: CATGGAAAATGAGCGCACCAAGGATCTAATCATCGA...CCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCATGCAGGAGCTGCTTCTaGGCCTTCTCTACATCTGAG +
Preference number: 5 (lower is better)
Translates to: KASPPGFAARPRGGERASCRSCF*AFSTSE
Trigger: CTCAGATGTAGAGAAGGCCAAGAAGCAGCTCCTGCA...TGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp TGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGTGCTTCCAGCTCCTTTaGGGCCTCACGGACAGCATC +
Preference number: 5 (lower is better)
Translates to: CFTQWRACPRAQHQEQTLCFQLL*GLTDSI
Trigger: GATGCTGTCCGTGAGGCCCAAAAGGAGCTGGAAGCA...CAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGCCTCCAGGGCTTCCTaGGCAGCCTCGCATTTCTCT +
Preference number: 5 (lower is better)
Translates to: ARPRGGERASTIYEGPAAASRAS*AASHFS
Trigger: AGAGAAATGCGAGGCTGCCAAGGAAGCCCTGGAGGC...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGGATTCCACTTCCTTTTaGCCCAATGATGTAGCGGTG +
Preference number: 5 (lower is better)
Translates to: GEAATQGQPTRLCCETSGDSTSF*PNDVAV
Trigger: CACCGCTACATCATTGGGCAAAAAGGAAGTGGAATC...CCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CCAGTCCCTGAATCATGTGGACTGAGGGAAAGCACTGGCCTCCACCCTCAACTCGTCACAGTGACGCAATaGGGGTCTGGCGCTCCACTC +
Preference number: 5 (lower is better)
Translates to: PVPESCGLRESTGLHPQLVTVTQ*GSGAPL
Trigger: GAGTGGAGCGCCAGACCCCAATTGCGTCACTGTGAC...GAGTTGAGGGTGGAGGCCAGTGCTTTCCCTCAGTCCACATGATTCAGGGACTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS CCA 90 bp GCCTTGATGGGCCGGATCTTGTTACTCCAGGCTCCGGCAGGTTCTTaGGCACTCTCCAAGCAAGCTGCTTTCTCAGGAAGTGGAGGGAAG +
Preference number: 5 (lower is better)
Translates to: ALMGRILLLQAPAGS*ALSKQAAFSGSGGK
Trigger: CTTCCCTCCACTTCCTGAGAAAGCAGCTTGCTTGGAGAGTGCCCAAGAACCTGCCGGAGCCTGGAGTAACAAGATCCGGCCCATCAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
ENSMUST00000186787.7
ENSMUST00000188988.7
ENSMUST00000189025.7
CDS-3UTR CAA 90 bp AAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGAAGGCAGATTTTTGCTaGTTCACCCTCTCCAAACTG +
Preference number: 5 (lower is better)
Translates to: KQPHKASPPGFAARPRGGKADFC*FTLSKL
Trigger: CAGTTTGGAGAGGGTGAACAAGCAAAAATCTGCCTT...CCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGAAGGCAGATTTTTGCTaGTTCACCCTCTCCAAACTG +
Preference number: 5 (lower is better)
Translates to: EAATQGQPTRLCCETSGRKADFC*FTLSKL
Trigger: CAGTTTGGAGAGGGTGAACAAGCAAAAATCTGCCTT...CCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACCATGATGGAGAGACCTaGATCTTTAGCCAGAGAGAG +
Preference number: 5 (lower is better)
Translates to: GQPTRLCCETSGRGKSINHDGET*IFSQRE
Trigger: CTCTCTCTGGCTAAAGATCAAGGTCTCTCCATCATG...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACTTCTCGATGCCTTCTTaGGTGCCAGTGATCTTGATC +
Preference number: 5 (lower is better)
Translates to: GQPTRLCCETSGRGKSINFSMPS*VPVILI
Trigger: GATCAAGATCACTGGCACCAAAGAAGGCATCGAGAA...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGTGCCAATGAGAGAGTaGTGTAGTTTGGCAGGAATT +
Preference number: 5 (lower is better)
Translates to: EAATQGQPTRLCCETSGRVPMRE*CSLAGI
Trigger: AATTCCTGCCAAACTACACAACTCTCTCATTGGCAC...CCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGGTGCCAATGAGAGAGTaGTGTAGTTTGGCAGGAATT +
Preference number: 5 (lower is better)
Translates to: GEAATQGQPTRLCCETSGVPMRE*CSLAGI
Trigger: AATTCCTGCCAAACTACACAACTCTCTCATTGGCAC...CCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGGCCTCCACACAGTCCTaGGCACCCTTGAGAGTGACT +
Preference number: 5 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLASTQS*APLRVT
Trigger: AGTCACTCTCAAGGGTGCCAAGGACTGTGTGGAGGC...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACGATTCCACTTCCTTTTaGCCCAATGATGTAGCGGTG +
Preference number: 5 (lower is better)
Translates to: GQPTRLCCETSGRGKSINDSTSF*PNDVAV
Trigger: CACCGCTACATCATTGGGCAAAAAGGAAGTGGAATC...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAATTTTGGGATGGTATTaGGGGTCTACAGTGACACTC +
Preference number: 5 (lower is better)
Translates to: QPHKASPPGFAARPRGGEILGWY*GSTVTL
Trigger: GAGTGTCACTGTAGACCCCAAATACCATCCCAAAAT...TTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp TCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGAGTCACAGTGACGCAATaGGGGTCTGGCGCTCCACTC +
Preference number: 5 (lower is better)
Translates to: SGRGKSINNLRGSSCWVRVTVTQ*GSGAPL
Trigger: GAGTGGAGCGCCAGACCCCAATTGCGTCACTGTGAC...TCTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 90 bp GTTACTCCAGGCTCCGGCAGGTTCTTGGGCACTCTCCAAGCAAGCTaGTTTCTCAGGAAGTGGAGGGAAGGCATCCTTGTAGGTTGGAGG +
Preference number: 5 (lower is better)
Translates to: VTPGSGRFLGTLQAS*FLRKWREGILVGWR
Trigger: CCTCCAACCTACAAGGATGCCTTCCCTCCACTTCCTGAGAAAGCAGCTTGCTTGGAGAGTGCCCAAGAACCTGCCGGAGCCTGGAGTAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
ENSMUST00000186787.7
ENSMUST00000188988.7
ENSMUST00000189025.7
CDS GCA 90 bp GTGAAGATCAAAGGGTACCTCTACCTCGATGGTGACTGGAACCAGTaGCTCCAGGGCTTCCTTGGCAGCCTCGCATTTCTCTTTCCGGCC +
Preference number: 5 (lower is better)
Translates to: VKIKGYLYLDGDWNQ*LQGFLGSLAFLFPA
Trigger: GGCCGGAAAGAGAAATGCGAGGCTGCCAAGGAAGCCCTGGAGGCACTGGTTCCAGTCACCATCGAGGTAGAGGTACCCTTTGATCTTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATGTGATGACAGAGGCCTaGATGGGCCGGATCTTGTTA +
Preference number: 5 (lower is better)
Translates to: QPTRLCCETSGRGKSINNVMTEA*MGRILL
Trigger: TAACAAGATCCGGCCCATCAAGGCCTCTGTCATCAC...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAATCTCAAGGCAGATTTTaGCTTGTTCACCCTCTCCAA +
Preference number: 5 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKSQGRF*LVHPLQ
Trigger: TTGGAGAGGGTGAACAAGCAAAAATCTGCCTTGAGA...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCATCACCCACAAGTCTGTaGTACGGCCCAGCGATGAAG +
Preference number: 5 (lower is better)
Translates to: PRGGERASTIYEGPAAGSSPTSL*YGPAMK
Trigger: CTTCATCGCTGGGCCGTACAACAGACTTGTGGGTGA...TGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCCTTCAATCTGTTCTaGGGCTACATTCACATCCTC +
Preference number: 5 (lower is better)
Translates to: RPGEAATQGQPTRLCCETSFNLF*GYIHIL
Trigger: GAGGATGTGAATGTAGCCCAAGAACAGATTGAAGGA...GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAAGTAAAACTCTTGGTTaGCTTCTCCTCAGCCAGGTG +
Preference number: 5 (lower is better)
Translates to: ASPPGFAARPRGGERASTSKTLG*LLLSQV
Trigger: CACCTGGCTGAGGAGAAGCAAACCAAGAGTTTTACT...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp ACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGGCCTCCACACAGTCCTaGGCACCCTTGAGAGTGACT +
Preference number: 5 (lower is better)
Translates to: TLLSVSHSGVPVPEHSIRASTQS*APLRVT
Trigger: AGTCACTCTCAAGGGTGCCAAGGACTGTGTGGAGGC...CCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp ACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGCCTCCAGGGCTTCCTaGGCAGCCTCGCATTTCTCT +
Preference number: 5 (lower is better)
Translates to: TRLCCETSGRGKSINNLRASRAS*AASHFS
Trigger: AGAGAAATGCGAGGCTGCCAAGGAAGCCCTGGAGGC...TCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAACTCATCCATCATCTaGCGGATTCCACTTCCTTTT +
Preference number: 5 (lower is better)
Translates to: GEAATQGQPTRLCCETSGNSSII*RIPLPF
Trigger: AAAAGGAAGTGGAATCCGCAAGATGATGGATGAGTT...CCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGATTTTGGGATGGTATTaGGGGTCTACAGTGACACTC +
Preference number: 5 (lower is better)
Translates to: HTRPAHQALLRDLGEGKEILGWY*GSTVTL
Trigger: GAGTGTCACTGTAGACCCCAAATACCATCCCAAAAT...CTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 90 bp GATGTAGCGGTGAAGATCAAAGGGTACCTCTACCTCGATGGTGACTaGAACCAGTGCCTCCAGGGCTTCCTTGGCAGCCTCGCATTTCTC +
Preference number: 5 (lower is better)
Translates to: DVAVKIKGYLYLDGD*NQCLQGFLGSLAFL
Trigger: GAGAAATGCGAGGCTGCCAAGGAAGCCCTGGAGGCACTGGTTCCAGTCACCATCGAGGTAGAGGTACCCTTTGATCTTCACCGCTACATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCATTCAGCAAAACTCTCTaGGGTCAAAACTGCAACGGA +
Preference number: 5 (lower is better)
Translates to: KASPPGFAARPRGGERASFSKTL*GQNCNG
Trigger: TCCGTTGCAGTTTTGACCCAAGAGAGTTTTGCTGAA...TGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATCTAGCAACAATGTCTTaGCGGGCTTTCATGACGGCA +
Preference number: 5 (lower is better)
Translates to: QPTRLCCETSGRGKSINNLATMS*RAFMTA
Trigger: TGCCGTCATGAAAGCCCGCAAAGACATTGTTGCTAG...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAAGTTTCTCTCCGTTTTaGCCAATAACAAAGCGATGG +
Preference number: 5 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKSFSPF*PITKRW
Trigger: CCATCGCTTTGTTATTGGCAAAAACGGAGAGAAACT...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp TGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCGCAGGAAGGTCAATCTaGGTGTTGCTCTCTTCACGG +
Preference number: 5 (lower is better)
Translates to: CCETSGRGKSINNLRGSSAGRSI*VLLSSR
Trigger: CCGTGAAGAGAGCAACACCAAGATTGACCTTCCTGC...GCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGGACCCAGGCCACCCTCTACTTCTCAGCCCACTCTATCACCAGGACATCTGACGCAGGAAGGTCAATCTaGGTGTTGCTCTCTTCACGG +
Preference number: 5 (lower is better)
Translates to: RTQATLYFSAHSITRTSDAGRSI*VLLSSR
Trigger: CCGTGAAGAGAGCAACACCAAGATTGACCTTCCTGC...GTCAGATGTCCTGGTGATAGAGTGGGCTGAGAAGTAGAGGGTGGCCTGGGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp CCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGCAGGAAGGTCAATCTaGGTGTTGCTCTCTTCACGG +
Preference number: 5 (lower is better)
Translates to: PRGGERASTIYEGPAAGSAGRSI*VLLSSR
Trigger: CCGTGAAGAGAGCAACACCAAGATTGACCTTCCTGC...TGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTTACCTCCCCCTTaGCCAATGAGGAATTTGTGG +
Preference number: 5 (lower is better)
Translates to: ASPPGFAARPRGGERASTILPPP*PMRNLW
Trigger: CCACAAATTCCTCATTGGCAAAGGGGGAGGTAAAAT...TGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp TTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGAGCAGTCCTTGGCACCCTaGAGAGTGACTTTATCACTC +
Preference number: 5 (lower is better)
Translates to: FHTVACLSQSTASGADPEQSLAP*RVTLSL
Trigger: GAGTGATAAAGTCACTCTCAAGGGTGCCAAGGACTG...CTCAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp ACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGCCTCCACACAGTCCTaGGCACCCTTGAGAGTGACT +
Preference number: 5 (lower is better)
Translates to: TRLCCETSGRGKSINNLRASTQS*APLRVT
Trigger: AGTCACTCTCAAGGGTGCCAAGGACTGTGTGGAGGC...TCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGAACTCATCCATCATCTaGCGGATTCCACTTCCTTTT +
Preference number: 5 (lower is better)
Translates to: HTRPAHQALLRDLGEGKENSSII*RIPLPF
Trigger: AAAAGGAAGTGGAATCCGCAAGATGATGGATGAGTT...CTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGGGCTTCATGTAAACTaGCAGTGCCTCACTGTCCAC +
Preference number: 5 (lower is better)
Translates to: PRGGERASTIYEGPAAGSGLHVN*QCLTVH
Trigger: GTGGACAGTGAGGCACTGCAAGTTTACATGAAGCCC...TGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp TGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCGGGCTTCATGTAAACTaGCAGTGCCTCACTGTCCAC +
Preference number: 5 (lower is better)
Translates to: CETSGRGKSINNLRGSSCGLHVN*QCLTVH
Trigger: GTGGACAGTGAGGCACTGCAAGTTTACATGAAGCCC...GCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 90 bp CGGTTAACACTGGGTGGAGGGATGTTGATTCGCGTCCCTGTCTCCTaGATGATTTCACCCACAAGTCTGTTGTACGGCCCAGCGATGAAG +
Preference number: 5 (lower is better)
Translates to: RLTLGGGMLIRVPVS*MISPTSLLYGPAMK
Trigger: CTTCATCGCTGGGCCGTACAACAGACTTGTGGGTGAAATCATGCAGGAGACAGGGACGCGAATCAACATCCCTCCACCCAGTGTTAACCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 90 bp CTGTCCAAATTTGCTGCAAGGCCAGTGATGGCGATGGTGTCTGACTaGAGCTCGGGGGCTGGTACATGGATGTTCACCTCAAACTCATCC +
Preference number: 5 (lower is better)
Translates to: LSKFAARPVMAMVSD*SSGAGTWMFTSNSS
Trigger: GGATGAGTTTGAGGTGAACATCCATGTACCAGCCCCCGAGCTGCAGTCAGACACCATCGCCATCACTGGCCTTGCAGCAAATTTGGACAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 90 bp CTTGGCACCCTTGAGAGTGACTTTATCACTCTGCGTGCCAGAGCGTaGGAAGCTGACCATCACCCCGCCATACTCTTCAGCAATTTCTCG +
Preference number: 5 (lower is better)
Translates to: LGTLESDFITLRARA*EADHHPAILFSNFS
Trigger: CGAGAAATTGCTGAAGAGTATGGCGGGGTGATGGTCAGCTTCCCACGCTCTGGCACGCAGAGTGATAAAGTCACTCTCAAGGGTGCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTGGCAACTTTGATTTGTaGTGGAACCAGCCCACTTCG +
Preference number: 5 (lower is better)
Translates to: SPPGFAARPRGGERASTIGNFDL*WNQPTS
Trigger: CGAAGTGGGCTGGTTCCACAACAAATCAAAGTTGCC...AATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp TGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGTTCTCGATGCCTTCTTaGGTGCCAGTGATCTTGATC +
Preference number: 5 (lower is better)
Translates to: CFTQWRACPRAQHQEQTLFSMPS*VPVILI
Trigger: GATCAAGATCACTGGCACCAAAGAAGGCATCGAGAA...CAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp GGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACACTTTGTACTGGTCTTaGATTCTGTTGATGTTGGCT +
Preference number: 5 (lower is better)
Translates to: GQPTRLCCETSGRGKSINTLYWS*ILLMLA
Trigger: AGCCAACATCAACAGAATCAAAGACCAGTACAAAGT...GTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAATAACCTCTGGGAATTaGTCACGAATTTCTCGAATC +
Preference number: 5 (lower is better)
Translates to: SHTRPAHQALLRDLGEGKITSGN*SRISRI
Trigger: GATTCGAGAAATTCGTGACAAATTCCCAGAGGTTAT...TTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATGCTGGGTCTGGAAAGTaGATGATAACCTCTGGGAAT +
Preference number: 5 (lower is better)
Translates to: QPTRLCCETSGRGKSINNAGSGK*MITSGN
Trigger: ATTCCCAGAGGTTATCATCAACTTTCCAGACCCAGC...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTTCCACAGTAAAACTCTaGGTTTGCTTCTCCTCAGCC +
Preference number: 5 (lower is better)
Translates to: VFHTVACLSQSTASGADPSTVKL*VCFSSA
Trigger: GGCTGAGGAGAAGCAAACCAAGAGTTTTACTGTGGA...AGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp AAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGGCCTCCAGGGCTTCCTaGGCAGCCTCGCATTTCTCT +
Preference number: 5 (lower is better)
Translates to: KCSITLLSVSHSGVPVPEASRAS*AASHFS
Trigger: AGAGAAATGCGAGGCTGCCAAGGAAGCCCTGGAGGC...CTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp AAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGATCCTTATCAGGAAATaGGATGTTCACTTCATGTTC +
Preference number: 5 (lower is better)
Translates to: KQPHKASPPGFAARPRGGILIRK*DVHFMF
Trigger: GAACATGAAGTGAACATCCAATTTCCTGATAAGGAT...CCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GACACAGGAAGTCAACTCCTAGCCGCTGTGGAGCTCTGGTGTGAAGGTCAGAGTATTTTCCGGATGGCTTaGCCCCGGGCACCAATGATT +
Preference number: 5 (lower is better)
Translates to: DTGSQLLAAVELWCEGQSIFRMA*PRAPMI
Trigger: AATCATTGGTGCCCGGGGCAAAGCCATCCGGAAAAT...ACTCTGACCTTCACACCAGAGCTCCACAGCGGCTAGGAGTTGACTTCCTGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS CCA 90 bp ATGATTTCACCCACAAGTCTGTTGTACGGCCCAGCGATGAAGGGGTaGAAAGCCTTCTCCACTTCTAGCCTCTCTACAGCACGCTTGTCC +
Preference number: 5 (lower is better)
Translates to: MISPTSLLYGPAMKG*KAFSTSSLSTARLS
Trigger: GGACAAGCGTGCTGTAGAGAGGCTAGAAGTGGAGAAGGCTTTCCACCCCTTCATCGCTGGGCCGTACAACAGACTTGTGGGTGAAATCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp TTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGAGTTCAGCAAAACTCTCTaGGGTCAAAACTGCAACGGA +
Preference number: 5 (lower is better)
Translates to: FHTVACLSQSTASGADPEFSKTL*GQNCNG
Trigger: TCCGTTGCAGTTTTGACCCAAGAGAGTTTTGCTGAA...CTCAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp TGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTGTCTCAAGGCAGATTTTaGCTTGTTCACCCTCTCCAA +
Preference number: 5 (lower is better)
Translates to: CFTQWRACPRAQHQEQTLSQGRF*LVHPLQ
Trigger: TTGGAGAGGGTGAACAAGCAAAAATCTGCCTTGAGA...CAGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGTCACAGTTGGCTCGCTaGCCAGTGATAATAATGGTC +
Preference number: 5 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLSQLAR*PVIIMV
Trigger: GACCATTATTATCACTGGCAAGCGAGCCAACTGTGA...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGTCACAGTTGGCTCGCTaGCCAGTGATAATAATGGTC +
Preference number: 5 (lower is better)
Translates to: LGEGKEHQQFTRVQLLGQSQLAR*PVIIMV
Trigger: GACCATTATTATCACTGGCAAGCGAGCCAACTGTGA...CTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTGTAGTTTGGCAGGAATaGAGACCTCCACTTCAGCTA +
Preference number: 5 (lower is better)
Translates to: AHQALLRDLGEGKEHQQFVVWQE*RPPLQL
Trigger: TAGCTGAAGTGGAGGTCTCAATTCCTGCCAAACTAC...AAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGTAGTTTGGCAGGAATaGAGACCTCCACTTCAGCTA +
Preference number: 5 (lower is better)
Translates to: ARPRGGERASTIYEGPAAVVWQE*RPPLQL
Trigger: TAGCTGAAGTGGAGGTCTCAATTCCTGCCAAACTAC...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTAGAGAGTTGTGTAGTTaGGCAGGAATTGAGACCTCC +
Preference number: 5 (lower is better)
Translates to: ARPRGGERASTIYEGPAARELCS*AGIETS
Trigger: GGAGGTCTCAATTCCTGCCAAACTACACAACTCTCT...AGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATGTGCCAATGAGAGAGTaGTGTAGTTTGGCAGGAATT +
Preference number: 5 (lower is better)
Translates to: QPTRLCCETSGRGKSINNVPMRE*CSLAGI
Trigger: AATTCCTGCCAAACTACACAACTCTCTCATTGGCAC...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTAGTAAAACTCTTGGTTaGCTTCTCCTCAGCCAGGTG +
Preference number: 5 (lower is better)
Translates to: SPPGFAARPRGGERASTISKTLG*LLLSQV
Trigger: CACCTGGCTGAGGAGAAGCAAACCAAGAGTTTTACT...AATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp TGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTCCACAGTAAAACTCTaGGTTTGCTTCTCCTCAGCC +
Preference number: 5 (lower is better)
Translates to: CCETSGRGKSINNLRGSSSTVKL*VCFSSA
Trigger: GGCTGAGGAGAAGCAAACCAAGAGTTTTACTGTGGA...GCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTATTTTACCTCCCCCTTaGCCAATGAGGAATTTGTGG +
Preference number: 5 (lower is better)
Translates to: VFHTVACLSQSTASGADPILPPP*PMRNLW
Trigger: CCACAAATTCCTCATTGGCAAAGGGGGAGGTAAAAT...AGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp AGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGCAGTCCTTGGCACCCTaGAGAGTGACTTTATCACTC +
Preference number: 5 (lower is better)
Translates to: RLCCETSGRGKSINNLRGQSLAP*RVTLSL
Trigger: GAGTGATAAAGTCACTCTCAAGGGTGCCAAGGACTG...CCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCATTTTGGGATGGTATTaGGGGTCTACAGTGACACTC +
Preference number: 5 (lower is better)
Translates to: SVSHSGVPVPEHSIRSRPILGWY*GSTVTL
Trigger: GAGTGTCACTGTAGACCCCAAATACCATCCCAAAAT...GGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp AGGCCTGGAGAAGCAGCCACACAAGGCCAGCCCACCAGGCTTTGCTGCGAGACCATCCTTATCAGGAAATaGGATGTTCACTTCATGTTC +
Preference number: 5 (lower is better)
Translates to: RPGEAATQGQPTRLCCETILIRK*DVHFMF
Trigger: GAACATGAAGTGAACATCCAATTTCCTGATAAGGAT...GGTCTCGCAGCAAAGCCTGGTGGGCTGGCCTTGTGTGGCTGCTTCTCCAGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS TCA 90 bp CCCCTGATGACAACAGTGTCGCTTCCAGAACCTTCCACAGGAAAGTaGATATGGACGCCACCACATTCCTCCATGATGGAGCGGATCAGA +
Preference number: 5 (lower is better)
Translates to: PLMTTVSLPEPSTGK*IWTPPHSSMMERIR
Trigger: TCTGATCCGCTCCATCATGGAGGAATGTGGTGGCGTCCATATTCACTTTCCTGTGGAAGGTTCTGGAAGCGACACTGTTGTCATCAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 90 bp GCCTCACGGACAGCATCCTCCTTTCCTATGATTGTGATCAGGTCCTaGTCCTTATCTTCAGCAGCCGGAAATATGATGCGGGCTCCAGTA +
Preference number: 5 (lower is better)
Translates to: ASRTASSFPMIVIRS*SLSSAAGNMMRAPV
Trigger: TACTGGAGCCCGCATCATATTTCCGGCTGCTGAAGATAAGGACCAGGACCTGATCACAATCATAGGAAAGGAGGATGCTGTCCGTGAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGTTCAGCAAAACTCTCTaGGGTCAAAACTGCAACGGA +
Preference number: 5 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLFSKTL*GQNCNG
Trigger: TCCGTTGCAGTTTTGACCCAAGAGAGTTTTGCTGAA...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCAGGCAACTTTGATTTGTaGTGGAACCAGCCCACTTCG +
Preference number: 5 (lower is better)
Translates to: RLPCLVFHTVACLSQSTAGNFDL*WNQPTS
Trigger: CGAAGTGGGCTGGTTCCACAACAAATCAAAGTTGCC...TGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp TGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCAAGGCAGATTTTTGCTaGTTCACCCTCTCCAAACTG +
Preference number: 5 (lower is better)
Translates to: CETSGRGKSINNLRGSSCKADFC*FTLSKL
Trigger: CAGTTTGGAGAGGGTGAACAAGCAAAAATCTGCCTT...GCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCATCTCAAGGCAGATTTTaGCTTGTTCACCCTCTCCAA +
Preference number: 5 (lower is better)
Translates to: PRGGERASTIYEGPAAGSSQGRF*LVHPLQ
Trigger: TTGGAGAGGGTGAACAAGCAAAAATCTGCCTTGAGA...TGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GACACAGGAAGTCAACTCCTAGCCGCTGTGGAGCTCTGGTGTGAAGGTCAGAGTCATGATGGAGAGACCTaGATCTTTAGCCAGAGAGAG +
Preference number: 5 (lower is better)
Translates to: DTGSQLLAAVELWCEGQSHDGET*IFSQRE
Trigger: CTCTCTCTGGCTAAAGATCAAGGTCTCTCCATCATG...ACTCTGACCTTCACACCAGAGCTCCACAGCGGCTAGGAGTTGACTTCCTGTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp TCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCCTAGCAACAATGTCTTaGCGGGCTTTCATGACGGCA +
Preference number: 5 (lower is better)
Translates to: SITLLSVSHSGVPVPEHSLATMS*RAFMTA
Trigger: TGCCGTCATGAAAGCCCGCAAAGACATTGTTGCTAG...GCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp CAGCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATATTTCTTGCAGTGAATaGCCCTTTGGCCCAATAACA +
Preference number: 5 (lower is better)
Translates to: QPTRLCCETSGRGKSINNISCSE*PFGPIT
Trigger: TGTTATTGGGCCAAAGGGCAATTCACTGCAAGAAAT...ATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp AGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGGTAGTTTGGCAGGAATaGAGACCTCCACTTCAGCTA +
Preference number: 5 (lower is better)
Translates to: RLCCETSGRGKSINNLRGVVWQE*RPPLQL
Trigger: TAGCTGAAGTGGAGGTCTCAATTCCTGCCAAACTAC...CCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATTGTGGTATTCTGGCTaGGCTCGGATGTCCACAGTA +
Preference number: 5 (lower is better)
Translates to: RLPCLVFHTVACLSQSTALWYSG*ARMSTV
Trigger: TACTGTGGACATCCGAGCCAAGCCAGAATACCACAA...TGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp TCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCCAGTCCTTGGCACCCTaGAGAGTGACTTTATCACTC +
Preference number: 5 (lower is better)
Translates to: SITLLSVSHSGVPVPEHSQSLAP*RVTLSL
Trigger: GAGTGATAAAGTCACTCTCAAGGGTGCCAAGGACTG...GCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS TCA 90 bp TGGCGAGCTTTCTCGATGCCTTCTTTGGTGCCAGTGATCTTGATCTaGTTACTGGGGTCATCTGGGCGTGGGATCTGGATTTTGGTTGCA +
Preference number: 5 (lower is better)
Translates to: WRAFSMPSLVPVILI*LLGSSGRGIWILVA
Trigger: TGCAACCAAAATCCAGATCCCACGCCCAGATGACCCCAGTAATCAGATCAAGATCACTGGCACCAAAGAAGGCATCGAGAAAGCTCGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 90 bp CACCAGCATATAGTCTTCAACCACATTCTCCAGGTTCTGGATCAATaGTTCCAGCTCCTTTTGGGCCTCACGGACAGCATCCTCCTTTCC +
Preference number: 5 (lower is better)
Translates to: HQHIVFNHILQVLDQ*FQLLLGLTDSILLS
Trigger: GGAAAGGAGGATGCTGTCCGTGAGGCCCAAAAGGAGCTGGAAGCATTGATCCAGAACCTGGAGAATGTGGTTGAAGACTATATGCTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 90 bp TCTACAGCACGCTTGTCCTGCTCAGCAGAGATTAGGAGGACTTCATaGCGAGCTTTCTCGATGCCTTCTTTGGTGCCAGTGATCTTGATC +
Preference number: 5 (lower is better)
Translates to: STARLSCSAEIRRTS*RAFSMPSLVPVILI
Trigger: GATCAAGATCACTGGCACCAAAGAAGGCATCGAGAAAGCTCGCCATGAAGTCCTCCTAATCTCTGCTGAGCAGGACAAGCGTGCTGTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 90 bp CTCCTTCTCTCCAGTGAAGACGATTTCTGTACGGTTAACACTGGGTaGAGGGATGTTGATTCGCGTCCCTGTCTCCTGCATGATTTCACC +
Preference number: 5 (lower is better)
Translates to: LLLSSEDDFCTVNTG*RDVDSRPCLLHDFT
Trigger: GGTGAAATCATGCAGGAGACAGGGACGCGAATCAACATCCCTCCACCCAGTGTTAACCGTACAGAAATCGTCTTCACTGGAGAGAAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp TCACGAAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCGTGATGACAGAGGCCTaGATGGGCCGGATCTTGTTA +
Preference number: 5 (lower is better)
Translates to: SRNARLPCLVFHTVACLSVMTEA*MGRILL
Trigger: TAACAAGATCCGGCCCATCAAGGCCTCTGTCATCAC...GGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGAGTTTCTCTCCGTTTTaGCCAATAACAAAGCGATGG +
Preference number: 5 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLSFSPF*PITKRW
Trigger: CCATCGCTTTGTTATTGGCAAAAACGGAGAGAAACT...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTATTTCTTGCAGTGAATaGCCCTTTGGCCCAATAACA +
Preference number: 5 (lower is better)
Translates to: AHQALLRDLGEGKEHQQFISCSE*PFGPIT
Trigger: TGTTATTGGGCCAAAGGGCAATTCACTGCAAGAAAT...AAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp TCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGATCCTTCAATCTGTTCTaGGGCTACATTCACATCCTC +
Preference number: 5 (lower is better)
Translates to: SGRGKSINNLRGSSCWVRSFNLF*GYIHIL
Trigger: GAGGATGTGAATGTAGCCCAAGAACAGATTGAAGGA...TCTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCAGGAGCAGACCCTATAACCTCTGGGAATTaGTCACGAATTTCTCGAATC +
Preference number: 5 (lower is better)
Translates to: VFHTVACLSQSTASGADPITSGN*SRISRI
Trigger: GATTCGAGAAATTCGTGACAAATTCCCAGAGGTTAT...AGGGTCTGCTCCTGATGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp CGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCATCACAGTTGGCTCGCTaGCCAGTGATAATAATGGTC +
Preference number: 5 (lower is better)
Translates to: RLPCLVFHTVACLSQSTASQLAR*PVIIMV
Trigger: GACCATTATTATCACTGGCAAGCGAGCCAACTGTGA...TGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp CGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCAAGAGAGTTGTGTAGTTaGGCAGGAATTGAGACCTCC +
Preference number: 5 (lower is better)
Translates to: RLPCLVFHTVACLSQSTARELCS*AGIETS
Trigger: GGAGGTCTCAATTCCTGCCAAACTACACAACTCTCT...TGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp TGGCCTCCACCCTCAACTCAATGGCAAGCCCAGAATCACCAGAAATGTCTACATTGCAGGAGCTGCTTCTaGGCCTTCTCTACATCTGAG +
Preference number: 5 (lower is better)
Translates to: WPPPSTQWQAQNHQKCLHCRSCF*AFSTSE
Trigger: CTCAGATGTAGAGAAGGCCAAGAAGCAGCTCCTGCA...ATGTAGACATTTCTGGTGATTCTGGGCTTGCCATTGAGTTGAGGGTGGAGGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp CGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCAAGTAAAACTCTTGGTTaGCTTCTCCTCAGCCAGGTG +
Preference number: 5 (lower is better)
Translates to: RLPCLVFHTVACLSQSTASKTLG*LLLSQV
Trigger: CACCTGGCTGAGGAGAAGCAAACCAAGAGTTTTACT...TGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp ACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGATCCACAGTAAAACTCTaGGTTTGCTTCTCCTCAGCC +
Preference number: 5 (lower is better)
Translates to: TRLCCETSGRGKSINNLRSTVKL*VCFSSA
Trigger: GGCTGAGGAGAAGCAAACCAAGAGTTTTACTGTGGA...TCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS TCA 90 bp AGCAACAATGTCTTTGCGGGCTTTCATGACGGCATCCAGCTTCCCTaGGACCATGATGGAGAGACCTTGATCTTTAGCCAGAGAGAGTTC +
Preference number: 5 (lower is better)
Translates to: SNNVFAGFHDGIQLP*DHDGETLIFSQREF
Trigger: GAACTCTCTCTGGCTAAAGATCAAGGTCTCTCCATCATGGTCTCAGGGAAGCTGGATGCCGTCATGAAAGCCCGCAAAGACATTGTTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
ENSMUST00000188988.7
CDS CCA 90 bp TCAACCACATTCTCCAGGTTCTGGATCAATGCTTCCAGCTCCTTTTaGGCCTCACGGACAGCATCCTCCTTTCCTATGATTGTGATCAGG +
Preference number: 5 (lower is better)
Translates to: STTFSRFWINASSSF*ASRTASSFPMIVIR
Trigger: CCTGATCACAATCATAGGAAAGGAGGATGCTGTCCGTGAGGCCCAAAAGGAGCTGGAAGCATTGATCCAGAACCTGGAGAATGTGGTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp TCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCTCCTTCAATCTGTTCTaGGGCTACATTCACATCCTC +
Preference number: 5 (lower is better)
Translates to: SITLLSVSHSGVPVPEHSSFNLF*GYIHIL
Trigger: GAGGATGTGAATGTAGCCCAAGAACAGATTGAAGGA...GCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp TGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCACTTTGTACTGGTCTTaGATTCTGTTGATGTTGGCT +
Preference number: 5 (lower is better)
Translates to: CCETSGRGKSINNLRGSSTLYWS*ILLMLA
Trigger: AGCCAACATCAACAGAATCAAAGACCAGTACAAAGT...GCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGTTGTGGTATTCTGGCTaGGCTCGGATGTCCACAGTA +
Preference number: 5 (lower is better)
Translates to: KCSITLLSVSHSGVPVPELWYSG*ARMSTV
Trigger: TACTGTGGACATCCGAGCCAAGCCAGAATACCACAA...CTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp TCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGCTGGGTCAGAAACTCATCCATCATCTaGCGGATTCCACTTCCTTTT +
Preference number: 5 (lower is better)
Translates to: SGRGKSINNLRGSSCWVRNSSII*RIPLPF
Trigger: AAAAGGAAGTGGAATCCGCAAGATGATGGATGAGTT...TCTGACCCAGCAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp ACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAAGTTTCTCTCCGTTTTaGCCAATAACAAAGCGATGG +
Preference number: 5 (lower is better)
Translates to: TRLCCETSGRGKSINNLRSFSPF*PITKRW
Trigger: CCATCGCTTTGTTATTGGCAAAAACGGAGAGAAACT...TCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp GCCCACCAGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTCTATTAATCAGGTCTTaGACCATTCCTTCAATCTGT +
Preference number: 5 (lower is better)
Translates to: AHQALLRDLGEGKEHQQFLLIRS*TIPSIC
Trigger: ACAGATTGAAGGAATGGTCAAAGACCTGATTAATAG...AAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCTGGTGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp AGGCTTTGCTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGACTTTGTACTGGTCTTaGATTCTGTTGATGTTGGCT +
Preference number: 5 (lower is better)
Translates to: RLCCETSGRGKSINNLRGTLYWS*ILLMLA
Trigger: AGCCAACATCAACAGAATCAAAGACCAGTACAAAGT...CCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAGCAAAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp TCACGAAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCGCTGGGTCTGGAAAGTaGATGATAACCTCTGGGAAT +
Preference number: 5 (lower is better)
Translates to: SRNARLPCLVFHTVACLSAGSGK*MITSGN
Trigger: ATTCCCAGAGGTTATCATCAACTTTCCAGACCCAGC...GGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp CGAAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGATTTTACCTCCCCCTTaGCCAATGAGGAATTTGTGG +
Preference number: 5 (lower is better)
Translates to: RNARLPCLVFHTVACLSQILPPP*PMRNLW
Trigger: CCACAAATTCCTCATTGGCAAAGGGGGAGGTAAAAT...CTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTTCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp AAATGCTCGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGGATTCCACTTCCTTTTaGCCCAATGATGTAGCGGTG +
Preference number: 5 (lower is better)
Translates to: KCSITLLSVSHSGVPVPEDSTSF*PNDVAV
Trigger: CACCGCTACATCATTGGGCAAAAAGGAAGTGGAATC...CTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCGAGCATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp CTGCGAGACCTCGGGGAGGGGAAAGAGCATCAACAATTTACGAGGGTCCAGCTGATCCTTATCAGGAAATaGGATGTTCACTTCATGTTC +
Preference number: 5 (lower is better)
Translates to: LRDLGEGKEHQQFTRVQLILIRK*DVHFMF
Trigger: GAACATGAAGTGAACATCCAATTTCCTGATAAGGAT...CAGCTGGACCCTCGTAAATTGTTGATGCTCTTTCCCCTCCCCGAGGTCTCGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 90 bp TTGAGCTTCCAGATCCTCAATGATTTCCTGAATGCGTTTCTTGGCTaGCTCCACACAGTCCTTGGCACCCTTGAGAGTGACTTTATCACT +
Preference number: 5 (lower is better)
Translates to: LSFQILNDFLNAFLG*LHTVLGTLESDFIT
Trigger: AGTGATAAAGTCACTCTCAAGGGTGCCAAGGACTGTGTGGAGGCAGCCAAGAAACGCATTCAGGAAATCATTGAGGATCTGGAAGCTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CTGTCCGATACCATGCCTTCCTCCTATCCTGAAGCCTGTGCTAAGCAGATTTTGTCGATGATTAGATCCTaGGTGCGCTCATTTTCCATG +
Preference number: 5 (lower is better)
Translates to: LSDTMPSSYPEACAKQILSMIRS*VRSFSM
Trigger: CATGGAAAATGAGCGCACCAAGGATCTAATCATCGA...CAAAATCTGCTTAGCACAGGCTTCAGGATAGGAGGAAGGCATGGTATCGGACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS TCA 90 bp GAACTTGATTTGAACATTGTAGTCCCGAGTGATCTGCTGGATTCTTaGACCTTTGGGACCCATGACCGATCGGTGAAACTTCTGGGGTAT +
Preference number: 5 (lower is better)
Translates to: ELDLNIVVPSDLLDS*TFGTHDRSVKLLGY
Trigger: ATACCCCAGAAGTTTCACCGATCGGTCATGGGTCCCAAAGGTTCAAGAATCCAGCAGATCACTCGGGACTACAATGTTCAAATCAAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 90 bp GGCTCGCTTGCCAGTGATAATAATGGTCTCAGAGTTGCTGTTCTCTaGAGGAAGGTCAATCTTGGTGTTGCTCTCTTCACGGATCTTTTT +
Preference number: 5 (lower is better)
Translates to: GSLASDNNGLRVAVL*RKVNLGVALFTDLF
Trigger: AAAAAGATCCGTGAAGAGAGCAACACCAAGATTGACCTTCCTGCAGAGAACAGCAACTCTGAGACCATTATTATCACTGGCAAGCGAGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CGATTACCTTGCTTAGTGTTTCACACAGTGGCGTGCCTGTCCCAGAGCACAGCACTATTAATCAGGTCTTaGACCATTCCTTCAATCTGT +
Preference number: 5 (lower is better)
Translates to: RLPCLVFHTVACLSQSTALLIRS*TIPSIC
Trigger: ACAGATTGAAGGAATGGTCAAAGACCTGATTAATAG...TGCTGTGCTCTGGGACAGGCACGCCACTGTGTGAAACACTAAGCAAGGTAATCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp TCCACCCTCAACTCAATGGCAAGCCCAGAATCACCAGAAATGTCTACATCACAAAGAGAGTTGTGTAGTTaGGCAGGAATTGAGACCTCC +
Preference number: 5 (lower is better)
Translates to: STLNSMASPESPEMSTSQRELCS*AGIETS
Trigger: GGAGGTCTCAATTCCTGCCAAACTACACAACTCTCT...TTGTGATGTAGACATTTCTGGTGATTCTGGGCTTGCCATTGAGTTGAGGGTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp TCCATCCAAAGGGAACTGAAGTTAGACTTGGGAAAGCAATTCTGGATCCACTTAGGGCTTCATGTAAACTaGCAGTGCCTCACTGTCCAC +
Preference number: 5 (lower is better)
Translates to: SIQRELKLDLGKQFWIHLGLHVN*QCLTVH
Trigger: GTGGACAGTGAGGCACTGCAAGTTTACATGAAGCCC...TAAGTGGATCCAGAATTGCTTTCCCAAGTCTAACTTCAGTTCCCTTTGGATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS CCA 90 bp CTGGATGGAAGGCTCTACACTGTGAACTGGATTTTCCTCTCTATCTaGGAACTTGATTTGAACATTGTAGTCCCGAGTGATCTGCTGGAT +
Preference number: 5 (lower is better)
Translates to: LDGRLYTVNWIFLSI*ELDLNIVVPSDLLD
Trigger: ATCCAGCAGATCACTCGGGACTACAATGTTCAAATCAAGTTCCCAGATAGAGAGGAAAATCCAGTTCACAGTGTAGAGCCTTCCATCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS TCA 90 bp CGAATTTCTCGAATCCGTTCACCTTTCTGCCCAATGATTGTGCGATaGAATCTTTGCTCGATGATTAGATCCTTGGTGCGCTCATTTTCC +
Preference number: 5 (lower is better)
Translates to: RISRIRSPFCPMIVR*NLCSMIRSLVRSFS
Trigger: GGAAAATGAGCGCACCAAGGATCTAATCATCGAGCAAAGATTTCATCGCACAATCATTGGGCAGAAAGGTGAACGGATTCGAGAAATTCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 90 bp TTCCAGGTGAGCACCAGTCCTCTGCATGATCTCAAGGCAGATTTTTaGTTGTTCACCCTCTCCAAACTGGTTCATGTCCTTATATTTTCT +
Preference number: 5 (lower is better)
Translates to: FQVSTSPLHDLKADF*LFTLSKLVHVLIFS
Trigger: AGAAAATATAAGGACATGAACCAGTTTGGAGAGGGTGAACAAGCAAAAATCTGCCTTGAGATCATGCAGAGGACTGGTGCTCACCTGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
ENSMUST00000186787.7
ENSMUST00000188988.7
ENSMUST00000189025.7
CDS CCA 90 bp AGCCTCATCTCCATTCTCCTGGATGGAAGGCTCTACACTGTGAACTaGATTTTCCTCTCTATCTGGGAACTTGATTTGAACATTGTAGTC +
Preference number: 5 (lower is better)
Translates to: SLISILLDGRLYTVN*IFLSIWELDLNIVV
Trigger: GACTACAATGTTCAAATCAAGTTCCCAGATAGAGAGGAAAATCCAGTTCACAGTGTAGAGCCTTCCATCCAGGAGAATGGAGATGAGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS-3UTR CAA 90 bp CCACATGAGAGTACTACCACACTGGCTGAGGTAGAAAGAAGGCAACTGAACAAGATAACCTCTGGGAATTaGTCACGAATTTCTCGAATC +
Preference number: 5 (lower is better)
Translates to: PHESTTTLAEVERRQLNKITSGN*SRISRI
Trigger: GATTCGAGAAATTCGTGACAAATTCCCAGAGGTTAT...CTTGTTCAGTTGCCTTCTTTCTACCTCAGCCAGTGTGGTAGTACTCTCATGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS TCA 90 bp ATTTCTTGCAGTGAATTGCCCTTTGGCCCAATAACATACTTGTGCTaGGACTTCTTCACCTCTACCGCAATGGTTGTAGTCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: ISCSELPFGPITYLC*DFFTSTAMVVVFFF
Trigger: GAAGAAGAAGACTACAACCATTGCGGTAGAGGTGAAGAAGTCTCAGCACAAGTATGTTATTGGGCCAAAGGGCAATTCACTGCAAGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS TCA 90 bp TGGGATCTCAACAGAAACTCCAGTTCTTTCCAGGATTTCTTGCAGTaGATTGCCCTTTGGCCCAATAACATACTTGTGCTGAGACTTCTT +
Preference number: 5 (lower is better)
Translates to: WDLNRNSSSFQDFLQ*IALWPNNILVLRLL
Trigger: AAGAAGTCTCAGCACAAGTATGTTATTGGGCCAAAGGGCAATTCACTGCAAGAAATCCTGGAAAGAACTGGAGTTTCTGTTGAGATCCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS-3UTR CAA 90 bp TCCACCCTCAACTCAATGGCAAGCCCAGAATCACCAGAAATGTCTACATCACAACTATTAATCAGGTCTTaGACCATTCCTTCAATCTGT +
Preference number: 5 (lower is better)
Translates to: STLNSMASPESPEMSTSQLLIRS*TIPSIC
Trigger: ACAGATTGAAGGAATGGTCAAAGACCTGATTAATAG...TTGTGATGTAGACATTTCTGGTGATTCTGGGCTTGCCATTGAGTTGAGGGTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170883.8
CDS CAA 90 bp GGCCTTGATGGGCCGGATCTTGTTACTCCAGGCTCCGGCAGGTTCTaGGGCACTCTCCAAGCAAGCTGCTTTCTCAGGAAGTGGAGGGAA +
Preference number: 6 (lower is better)
Translates to: GLDGPDLVTPGSGRF*GTLQASCFLRKWRE
Trigger: TTCCCTCCACTTCCTGAGAAAGCAGCTTGCTTGGAGAGTGCCCAAGAACCTGCCGGAGCCTGGAGTAACAAGATCCGGCCCATCAAGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
ENSMUST00000186787.7
ENSMUST00000188988.7
ENSMUST00000189025.7
CDS CAA 72 bp TCGATGGTGACTGGAACCAGTGCCTCCAGGGCTTCCTaGGCAGCCTCGCATTTCTCTTTCCGGCCAGAGATG +
Preference number: 6 (lower is better)
Translates to: SMVTGTSASRAS*AASHFSFRPEM
Trigger: CATCTCTGGCCGGAAAGAGAAATGCGAGGCTGCCAAGGAAGCCCTGGAGGCACTGGTTCCAGTCACCATCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS TCA 72 bp AGCGGTGAAGATCAAAGGGTACCTCTACCTCGATGGTaGCTGGAACCAGTGCCTCCAGGGCTTCCTTGGCAG +
Preference number: 6 (lower is better)
Translates to: SGEDQRVPLPRW*LEPVPPGLPWQ
Trigger: CTGCCAAGGAAGCCCTGGAGGCACTGGTTCCAGTCACCATCGAGGTAGAGGTACCCTTTGATCTTCACCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 72 bp GGCTCCGGCAGGTTCTTGGGCACTCTCCAAGCAAGCTaGTTTCTCAGGAAGTGGAGGGAAGGCATCCTTGTA +
Preference number: 6 (lower is better)
Translates to: GSGRFLGTLQAS*FLRKWREGILV
Trigger: TACAAGGATGCCTTCCCTCCACTTCCTGAGAAAGCAGCTTGCTTGGAGAGTGCCCAAGAACCTGCCGGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
ENSMUST00000186787.7
ENSMUST00000188988.7
ENSMUST00000189025.7
CDS CCA 72 bp CTCCAGCAGCTCCCGCTTGGCCTGCTGAACACCCTGTaGGTCTCCCTCAATTCGGATCAGGTTACTCTTTTC +
Preference number: 6 (lower is better)
Translates to: LQQLPLGLLNTL*VSLNSDQVTLF
Trigger: GAAAAGAGTAACCTGATCCGAATTGAGGGAGACCCACAGGGTGTTCAGCAGGCCAAGCGGGAGCTGCTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 72 bp GTGAAGATCAAAGGGTACCTCTACCTCGATGGTGACTaGAACCAGTGCCTCCAGGGCTTCCTTGGCAGCCTC +
Preference number: 6 (lower is better)
Translates to: VKIKGYLYLDGD*NQCLQGFLGSL
Trigger: GAGGCTGCCAAGGAAGCCCTGGAGGCACTGGTTCCAGTCACCATCGAGGTAGAGGTACCCTTTGATCTTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS TCA 72 bp CAGGTGCAGGAGCTGCTTCTTGGCCTTCTCTACATCTaGGGAAGGACCCCTGATGACAACAGTGTCGCTTCC +
Preference number: 6 (lower is better)
Translates to: QVQELLLGLLYI*GRTPDDNSVAS
Trigger: GGAAGCGACACTGTTGTCATCAGGGGTCCTTCCTCAGATGTAGAGAAGGCCAAGAAGCAGCTCCTGCACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 72 bp CTGGGTGGAGGGATGTTGATTCGCGTCCCTGTCTCCTaGATGATTTCACCCACAAGTCTGTTGTACGGCCCA +
Preference number: 6 (lower is better)
Translates to: LGGGMLIRVPVS*MISPTSLLYGP
Trigger: TGGGCCGTACAACAGACTTGTGGGTGAAATCATGCAGGAGACAGGGACGCGAATCAACATCCCTCCACCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 72 bp CCCACAAGTCTGTTGTACGGCCCAGCGATGAAGGGGTaGAAAGCCTTCTCCACTTCTAGCCTCTCTACAGCA +
Preference number: 6 (lower is better)
Translates to: PTSLLYGPAMKG*KAFSTSSLSTA
Trigger: TGCTGTAGAGAGGCTAGAAGTGGAGAAGGCTTTCCACCCCTTCATCGCTGGGCCGTACAACAGACTTGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 72 bp CTTGAGAGTGACTTTATCACTCTGCGTGCCAGAGCGTaGGAAGCTGACCATCACCCCGCCATACTCTTCAGC +
Preference number: 6 (lower is better)
Translates to: LESDFITLRARA*EADHHPAILFS
Trigger: GCTGAAGAGTATGGCGGGGTGATGGTCAGCTTCCCACGCTCTGGCACGCAGAGTGATAAAGTCACTCTCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 90 bp ACCTCTACCTCGATGGTGACTGGAACCAGTGCCTCCAGGGCTTCCTaGGCAGCCTCGCATTTCTCTTTCCGGCCAGAGATGATTATGATG +
Preference number: 6 (lower is better)
Translates to: TSTSMVTGTSASRAS*AASHFSFRPEMIMM
Trigger: CATCATAATCATCTCTGGCCGGAAAGAGAAATGCGAGGCTGCCAAGGAAGCCCTGGAGGCACTGGTTCCAGTCACCATCGAGGTAGAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS TCA 72 bp TCAGGTCCTGGTCCTTATCTTCAGCAGCCGGAAATATaGTGCGGGCTCCAGTACTGTCACGCACCTTTCGGA +
Preference number: 6 (lower is better)
Translates to: SGPGPYLQQPEI*CGLQYCHAPFG
Trigger: TCCGAAAGGTGCGTGACAGTACTGGAGCCCGCATCATATTTCCGGCTGCTGAAGATAAGGACCAGGACCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS TCA 72 bp CCATTATTTTCCGGATGGCTTTGCCCCGGGCACCAATaGTTCGAGCGTGCACACGGTGATCCAGTGGAACAT +
Preference number: 6 (lower is better)
Translates to: PLFSGWLCPGHQ*FERAHGDPVEH
Trigger: ATGTTCCACTGGATCACCGTGTGCACGCTCGAATCATTGGTGCCCGGGGCAAAGCCATCCGGAAAATAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 72 bp CGCTTGTCCTGCTCAGCAGAGATTAGGAGGACTTCATaGCGAGCTTTCTCGATGCCTTCTTTGGTGCCAGTG +
Preference number: 6 (lower is better)
Translates to: RLSCSAEIRRTS*RAFSMPSLVPV
Trigger: CACTGGCACCAAAGAAGGCATCGAGAAAGCTCGCCATGAAGTCCTCCTAATCTCTGCTGAGCAGGACAAGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp GCTGAGGCCTGTGTCTGTAGTCTAGCAACAATGTCTTaGCGGGCTTTCATGACGGCATCCAGCTTCCCTGAG +
Preference number: 6 (lower is better)
Translates to: AEACVCSLATMS*RAFMTASSFPE
Trigger: CTCAGGGAAGCTGGATGCCGTCATGAAAGCCCGCAAAGACATTGTTGCTAGACTACAGACACAGGCCTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
ENSMUST00000188988.7
CDS CAA 90 bp CGGGCTCCAGTACTGTCACGCACCTTTCGGATTTTACCTCCCCCTTaGCCAATGAGGAATTTGTGGTATTCTGGCTTGGCTCGGATGTCC +
Preference number: 6 (lower is better)
Translates to: RAPVLSRTFRILPPP*PMRNLWYSGLARMS
Trigger: GGACATCCGAGCCAAGCCAGAATACCACAAATTCCTCATTGGCAAAGGGGGAGGTAAAATCCGAAAGGTGCGTGACAGTACTGGAGCCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 72 bp CACAAAGCCTTTGGATGGTGCCCTGGACTCTTCATGTaGTGGGGGCTTCATGTAAACTTGCAGTGCCTCACT +
Preference number: 6 (lower is better)
Translates to: HKAFGWCPGLFM*WGLHVNLQCLT
Trigger: AGTGAGGCACTGCAAGTTTACATGAAGCCCCCAGCACATGAAGAGTCCAGGGCACCATCCAAAGGCTTTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 72 bp GTTGAGGATATGGTCGATAGCTTCCTCCACATTCTCTaGGAGTCCTGTCACAGTGACGCAATTGGGGTCTGG +
Preference number: 6 (lower is better)
Translates to: VEDMVDSFLHIL*ESCHSDAIGVW
Trigger: CCAGACCCCAATTGCGTCACTGTGACAGGACTCCCAGAGAATGTGGAGGAAGCTATCGACCATATCCTCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp AGAATCCGGCTGCGGGCAGCTTCACAGTTGGCTCGCTaGCCAGTGATAATAATGGTCTCAGAGTTGCTGTTC +
Preference number: 6 (lower is better)
Translates to: RIRLRAASQLAR*PVIIMVSELLF
Trigger: GAACAGCAACTCTGAGACCATTATTATCACTGGCAAGCGAGCCAACTGTGAAGCTGCCCGCAGCCGGATTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp TCCACCTTGAATTCATCCATTATTTTCCGGATGGCTTaGCCCCGGGCACCAATGATTCGAGCGTGCACACGG +
Preference number: 6 (lower is better)
Translates to: STLNSSIIFRMA*PRAPMIRACTR
Trigger: CCGTGTGCACGCTCGAATCATTGGTGCCCGGGGCAAAGCCATCCGGAAAATAATGGATGAATTCAAGGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 90 bp GGAACAGTTGCTGAGGCCTGTGTCTGTAGTCTAGCAACAATGTCTTaGCGGGCTTTCATGACGGCATCCAGCTTCCCTGAGACCATGATG +
Preference number: 6 (lower is better)
Translates to: GTVAEACVCSLATMS*RAFMTASSFPETMM
Trigger: CATCATGGTCTCAGGGAAGCTGGATGCCGTCATGAAAGCCCGCAAAGACATTGTTGCTAGACTACAGACACAGGCCTCAGCAACTGTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
ENSMUST00000188988.7
CDS CAA 90 bp TGGATAGACAGAATCCGGCTGCGGGCAGCTTCACAGTTGGCTCGCTaGCCAGTGATAATAATGGTCTCAGAGTTGCTGTTCTCTGCAGGA +
Preference number: 6 (lower is better)
Translates to: WIDRIRLRAASQLAR*PVIIMVSELLFSAG
Trigger: TCCTGCAGAGAACAGCAACTCTGAGACCATTATTATCACTGGCAAGCGAGCCAACTGTGAAGCTGCCCGCAGCCGGATTCTGTCTATCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 90 bp AAACTCTTGGTTTGCTTCTCCTCAGCCAGGTGCAGGAGCTGCTTCTaGGCCTTCTCTACATCTGAGGAAGGACCCCTGATGACAACAGTG +
Preference number: 6 (lower is better)
Translates to: KLLVCFSSARCRSCF*AFSTSEEGPLMTTV
Trigger: CACTGTTGTCATCAGGGGTCCTTCCTCAGATGTAGAGAAGGCCAAGAAGCAGCTCCTGCACCTGGCTGAGGAGAAGCAAACCAAGAGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 90 bp CCAGTGAAGACGATTTCTGTACGGTTAACACTGGGTGGAGGGATGTaGATTCGCGTCCCTGTCTCCTGCATGATTTCACCCACAAGTCTG +
Preference number: 6 (lower is better)
Translates to: PVKTISVRLTLGGGM*IRVPVSCMISPTSL
Trigger: CAGACTTGTGGGTGAAATCATGCAGGAGACAGGGACGCGAATCAACATCCCTCCACCCAGTGTTAACCGTACAGAAATCGTCTTCACTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 90 bp GAGTTGTGTAGTTTGGCAGGAATTGAGACCTCCACTTCAGCTATGTaGGCCAGATCTTTCTGGATAGACAGAATCCGGCTGCGGGCAGCT +
Preference number: 6 (lower is better)
Translates to: ELCSLAGIETSTSAM*ARSFWIDRIRLRAA
Trigger: AGCTGCCCGCAGCCGGATTCTGTCTATCCAGAAAGATCTGGCCAACATAGCTGAAGTGGAGGTCTCAATTCCTGCCAAACTACACAACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 90 bp GAGCGGATCAGACGGCCCTTTGTGCCAATGAGAGAGTTGTGTAGTTaGGCAGGAATTGAGACCTCCACTTCAGCTATGTTGGCCAGATCT +
Preference number: 6 (lower is better)
Translates to: ERIRRPFVPMRELCS*AGIETSTSAMLARS
Trigger: AGATCTGGCCAACATAGCTGAAGTGGAGGTCTCAATTCCTGCCAAACTACACAACTCTCTCATTGGCACAAAGGGCCGTCTGATCCGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 72 bp CAGATCCTCAATGATTTCCTGAATGCGTTTCTTGGCTaGCTCCACACAGTCCTTGGCACCCTTGAGAGTGAC +
Preference number: 6 (lower is better)
Translates to: QILNDFLNAFLG*LHTVLGTLESD
Trigger: GTCACTCTCAAGGGTGCCAAGGACTGTGTGGAGGCAGCCAAGAAACGCATTCAGGAAATCATTGAGGATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 72 bp TTAAAACTCCTTAAAGCCCGATCTTCCTGCTCAGCCTaGAGCTCCTTTACTCGATCCAGTAGCCCCGCCTTA +
Preference number: 6 (lower is better)
Translates to: LKLLKARSSCSA*SSFTRSSSPAL
Trigger: TAAGGCGGGGCTACTGGATCGAGTAAAGGAGCTGCAGGCTGAGCAGGAAGATCGGGCTTTAAGGAGTTTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 72 bp TCCAGTGAAGACGATTTCTGTACGGTTAACACTGGGTaGAGGGATGTTGATTCGCGTCCCTGTCTCCTGCAT +
Preference number: 6 (lower is better)
Translates to: SSEDDFCTVNTG*RDVDSRPCLLH
Trigger: ATGCAGGAGACAGGGACGCGAATCAACATCCCTCCACCCAGTGTTAACCGTACAGAAATCGTCTTCACTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp AAAGCCTTCTCCACTTCTAGCCTCTCTACAGCACGCTaGTCCTGCTCAGCAGAGATTAGGAGGACTTCATGG +
Preference number: 6 (lower is better)
Translates to: KAFSTSSLSTAR*SCSAEIRRTSW
Trigger: CCATGAAGTCCTCCTAATCTCTGCTGAGCAGGACAAGCGTGCTGTAGAGAGGCTAGAAGTGGAGAAGGCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp ACGATTTCTGTACGGTTAACACTGGGTGGAGGGATGTaGATTCGCGTCCCTGTCTCCTGCATGATTTCACCC +
Preference number: 6 (lower is better)
Translates to: TISVRLTLGGGM*IRVPVSCMISP
Trigger: GGGTGAAATCATGCAGGAGACAGGGACGCGAATCAACATCCCTCCACCCAGTGTTAACCGTACAGAAATCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp GAGCGGATCAGACGGCCCTTTGTGCCAATGAGAGAGTaGTGTAGTTTGGCAGGAATTGAGACCTCCACTTCA +
Preference number: 6 (lower is better)
Translates to: ERIRRPFVPMRE*CSLAGIETSTS
Trigger: TGAAGTGGAGGTCTCAATTCCTGCCAAACTACACAACTCTCTCATTGGCACAAAGGGCCGTCTGATCCGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 90 bp AGATCTTTCTGGATAGACAGAATCCGGCTGCGGGCAGCTTCACAGTaGGCTCGCTTGCCAGTGATAATAATGGTCTCAGAGTTGCTGTTC +
Preference number: 6 (lower is better)
Translates to: RSFWIDRIRLRAASQ*ARLPVIIMVSELLF
Trigger: GAACAGCAACTCTGAGACCATTATTATCACTGGCAAGCGAGCCAACTGTGAAGCTGCCCGCAGCCGGATTCTGTCTATCCAGAAAGATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 90 bp TCCATGATGGAGCGGATCAGACGGCCCTTTGTGCCAATGAGAGAGTaGTGTAGTTTGGCAGGAATTGAGACCTCCACTTCAGCTATGTTG +
Preference number: 6 (lower is better)
Translates to: SMMERIRRPFVPMRE*CSLAGIETSTSAML
Trigger: CAACATAGCTGAAGTGGAGGTCTCAATTCCTGCCAAACTACACAACTCTCTCATTGGCACAAAGGGCCGTCTGATCCGCTCCATCATGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS TCA 72 bp ACAACAGTGTCGCTTCCAGAACCTTCCACAGGAAAGTaGATATGGACGCCACCACATTCCTCCATGATGGAG +
Preference number: 6 (lower is better)
Translates to: TTVSLPEPSTGK*IWTPPHSSMME
Trigger: CTCCATCATGGAGGAATGTGGTGGCGTCCATATTCACTTTCCTGTGGAAGGTTCTGGAAGCGACACTGTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS TCA 72 bp CACGCACCTTTCGGATTTTACCTCCCCCTTTGCCAATaGGGAATTTGTGGTATTCTGGCTTGGCTCGGATGT +
Preference number: 6 (lower is better)
Translates to: HAPFGFYLPLCQ*GICGILAWLGC
Trigger: ACATCCGAGCCAAGCCAGAATACCACAAATTCCTCATTGGCAAAGGGGGAGGTAAAATCCGAAAGGTGCGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 72 bp ACAGTAAAACTCTTGGTTTGCTTCTCCTCAGCCAGGTaGAGGAGCTGCTTCTTGGCCTTCTCTACATCTGAG +
Preference number: 6 (lower is better)
Translates to: TVKLLVCFSSAR*RSCFLAFSTSE
Trigger: CTCAGATGTAGAGAAGGCCAAGAAGCAGCTCCTGCACCTGGCTGAGGAGAAGCAAACCAAGAGTTTTACTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 72 bp TTCTCCAGGTTCTGGATCAATGCTTCCAGCTCCTTTTaGGCCTCACGGACAGCATCCTCCTTTCCTATGATT +
Preference number: 6 (lower is better)
Translates to: FSRFWINASSSF*ASRTASSFPMI
Trigger: AATCATAGGAAAGGAGGATGCTGTCCGTGAGGCCCAAAAGGAGCTGGAAGCATTGATCCAGAACCTGGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp ATTCTCCAGGTTCTGGATCAATGCTTCCAGCTCCTTTaGGGCCTCACGGACAGCATCCTCCTTTCCTATGAT +
Preference number: 6 (lower is better)
Translates to: ILQVLDQCFQLL*GLTDSILLSYD
Trigger: ATCATAGGAAAGGAGGATGCTGTCCGTGAGGCCCAAAAGGAGCTGGAAGCATTGATCCAGAACCTGGAGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 90 bp TTCAACCACATTCTCCAGGTTCTGGATCAATGCTTCCAGCTCCTTTaGGGCCTCACGGACAGCATCCTCCTTTCCTATGATTGTGATCAG +
Preference number: 6 (lower is better)
Translates to: FNHILQVLDQCFQLL*GLTDSILLSYDCDQ
Trigger: CTGATCACAATCATAGGAAAGGAGGATGCTGTCCGTGAGGCCCAAAAGGAGCTGGAAGCATTGATCCAGAACCTGGAGAATGTGGTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS TCA 72 bp TGGATTCTTGAACCTTTGGGACCCATGACCGATCGGTaGAACTTCTGGGGTATAGCACATTCCACTGTCACT +
Preference number: 6 (lower is better)
Translates to: WILEPLGPMTDR*NFWGIAHSTVT
Trigger: AGTGACAGTGGAATGTGCTATACCCCAGAAGTTTCACCGATCGGTCATGGGTCCCAAAGGTTCAAGAATCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 72 bp ACCTCCCCCTTTGCCAATGAGGAATTTGTGGTATTCTaGCTTGGCTCGGATGTCCACAGTAAAACTCTTGGT +
Preference number: 6 (lower is better)
Translates to: TSPFANEEFVVF*LGSDVHSKTLG
Trigger: ACCAAGAGTTTTACTGTGGACATCCGAGCCAAGCCAGAATACCACAAATTCCTCATTGGCAAAGGGGGAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 72 bp ACAGCATCCTCCTTTCCTATGATTGTGATCAGGTCCTaGTCCTTATCTTCAGCAGCCGGAAATATGATGCGG +
Preference number: 6 (lower is better)
Translates to: TASSFPMIVIRS*SLSSAAGNMMR
Trigger: CCGCATCATATTTCCGGCTGCTGAAGATAAGGACCAGGACCTGATCACAATCATAGGAAAGGAGGATGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp AGACGGCCCTTTGTGCCAATGAGAGAGTTGTGTAGTTaGGCAGGAATTGAGACCTCCACTTCAGCTATGTTG +
Preference number: 6 (lower is better)
Translates to: RRPFVPMRELCS*AGIETSTSAML
Trigger: CAACATAGCTGAAGTGGAGGTCTCAATTCCTGCCAAACTACACAACTCTCTCATTGGCACAAAGGGCCGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp CCCCCTTTGCCAATGAGGAATTTGTGGTATTCTGGCTaGGCTCGGATGTCCACAGTAAAACTCTTGGTTTGC +
Preference number: 6 (lower is better)
Translates to: PPLPMRNLWYSG*ARMSTVKLLVC
Trigger: GCAAACCAAGAGTTTTACTGTGGACATCCGAGCCAAGCCAGAATACCACAAATTCCTCATTGGCAAAGGGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp GTACTGTCACGCACCTTTCGGATTTTACCTCCCCCTTaGCCAATGAGGAATTTGTGGTATTCTGGCTTGGCT +
Preference number: 6 (lower is better)
Translates to: VLSRTFRILPPP*PMRNLWYSGLA
Trigger: AGCCAAGCCAGAATACCACAAATTCCTCATTGGCAAAGGGGGAGGTAAAATCCGAAAGGTGCGTGACAGTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 90 bp ATGGTCTCAGAGTTGCTGTTCTCTGCAGGAAGGTCAATCTTGGTGTaGCTCTCTTCACGGATCTTTTTAATGTTTGCGCCTCCTTTCCCG +
Preference number: 6 (lower is better)
Translates to: MVSELLFSAGRSILV*LSSRIFLMFAPPFP
Trigger: CGGGAAAGGAGGCGCAAACATTAAAAAGATCCGTGAAGAGAGCAACACCAAGATTGACCTTCCTGCAGAGAACAGCAACTCTGAGACCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 90 bp GCTTCACAGTTGGCTCGCTTGCCAGTGATAATAATGGTCTCAGAGTaGCTGTTCTCTGCAGGAAGGTCAATCTTGGTGTTGCTCTCTTCA +
Preference number: 6 (lower is better)
Translates to: ASQLARLPVIIMVSE*LFSAGRSILVLLSS
Trigger: TGAAGAGAGCAACACCAAGATTGACCTTCCTGCAGAGAACAGCAACTCTGAGACCATTATTATCACTGGCAAGCGAGCCAACTGTGAAGC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 90 bp GTTCACCTCAAACTCATCCATCATCTTGCGGATTCCACTTCCTTTTaGCCCAATGATGTAGCGGTGAAGATCAAAGGGTACCTCTACCTC +
Preference number: 6 (lower is better)
Translates to: VHLKLIHHLADSTSF*PNDVAVKIKGYLYL
Trigger: GAGGTAGAGGTACCCTTTGATCTTCACCGCTACATCATTGGGCAAAAAGGAAGTGGAATCCGCAAGATGATGGATGAGTTTGAGGTGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS TCA 72 bp CGAATCCGTTCACCTTTCTGCCCAATGATTGTGCGATaGAATCTTTGCTCGATGATTAGATCCTTGGTGCGC +
Preference number: 6 (lower is better)
Translates to: RIRSPFCPMIVR*NLCSMIRSLVR
Trigger: GCGCACCAAGGATCTAATCATCGAGCAAAGATTTCATCGCACAATCATTGGGCAGAAAGGTGAACGGATTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS TCA 72 bp CCATCATCTTGCGGATTCCACTTCCTTTTTGCCCAATaGTGTAGCGGTGAAGATCAAAGGGTACCTCTACCT +
Preference number: 6 (lower is better)
Translates to: PSSCGFHFLFAQ*CSGEDQRVPLP
Trigger: AGGTAGAGGTACCCTTTGATCTTCACCGCTACATCATTGGGCAAAAAGGAAGTGGAATCCGCAAGATGATGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 72 bp AGCACCAGTCCTCTGCATGATCTCAAGGCAGATTTTTaGTTGTTCACCCTCTCCAAACTGGTTCATGTCCTT +
Preference number: 6 (lower is better)
Translates to: STSPLHDLKADF*LFTLSKLVHVL
Trigger: AAGGACATGAACCAGTTTGGAGAGGGTGAACAAGCAAAAATCTGCCTTGAGATCATGCAGAGGACTGGTGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
ENSMUST00000186787.7
ENSMUST00000188988.7
ENSMUST00000189025.7
CDS CCA 72 bp TGCAGTTTCTCTCCGTTTTTGCCAATAACAAAGCGATaGTGCTCTTTAGGAATGGGAACAGTTGCTGAGGCC +
Preference number: 6 (lower is better)
Translates to: CSFSPFLPITKR*CSLGMGTVAEA
Trigger: GGCCTCAGCAACTGTTCCCATTCCTAAAGAGCACCATCGCTTTGTTATTGGCAAAAACGGAGAGAAACTGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
ENSMUST00000188988.7
CDS CAA 72 bp ATTAATCAGGTCTTTGACCATTCCTTCAATCTGTTCTaGGGCTACATTCACATCCTCTGTGGGGCCCTCCAG +
Preference number: 6 (lower is better)
Translates to: INQVFDHSFNLF*GYIHILCGALQ
Trigger: CTGGAGGGCCCCACAGAGGATGTGAATGTAGCCCAAGAACAGATTGAAGGAATGGTCAAAGACCTGATTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp TTGGCTCGCTTGCCAGTGATAATAATGGTCTCAGAGTaGCTGTTCTCTGCAGGAAGGTCAATCTTGGTGTTG +
Preference number: 6 (lower is better)
Translates to: LARLPVIIMVSE*LFSAGRSILVL
Trigger: CAACACCAAGATTGACCTTCCTGCAGAGAACAGCAACTCTGAGACCATTATTATCACTGGCAAGCGAGCCAA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp TTTCGGATTTTACCTCCCCCTTTGCCAATGAGGAATTaGTGGTATTCTGGCTTGGCTCGGATGTCCACAGTA +
Preference number: 6 (lower is better)
Translates to: FRILPPPLPMRN*WYSGLARMSTV
Trigger: TACTGTGGACATCCGAGCCAAGCCAGAATACCACAAATTCCTCATTGGCAAAGGGGGAGGTAAAATCCGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp CTGTCCACCACATCTGCCAGATATTCCTCTTCTAGGTaGAGGATATGGTCGATAGCTTCCTCCACATTCTCT +
Preference number: 6 (lower is better)
Translates to: LSTTSARYSSSR*RIWSIASSTFS
Trigger: AGAGAATGTGGAGGAAGCTATCGACCATATCCTCAACCTAGAAGAGGAATATCTGGCAGATGTGGTGGACAG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 90 bp CAGGTGAGCACCAGTCCTCTGCATGATCTCAAGGCAGATTTTTGCTaGTTCACCCTCTCCAAACTGGTTCATGTCCTTATATTTTCTCTC +
Preference number: 6 (lower is better)
Translates to: QVSTSPLHDLKADFC*FTLSKLVHVLIFSL
Trigger: GAGAGAAAATATAAGGACATGAACCAGTTTGGAGAGGGTGAACAAGCAAAAATCTGCCTTGAGATCATGCAGAGGACTGGTGCTCACCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
ENSMUST00000186787.7
ENSMUST00000188988.7
ENSMUST00000189025.7
CDS TCA 72 bp AGTGAATTGCCCTTTGGCCCAATAACATACTTGTGCTaGGACTTCTTCACCTCTACCGCAATGGTTGTAGTC +
Preference number: 6 (lower is better)
Translates to: SELPFGPITYLC*DFFTSTAMVVV
Trigger: GACTACAACCATTGCGGTAGAGGTGAAGAAGTCTCAGCACAAGTATGTTATTGGGCCAAAGGGCAATTCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS GCA 72 bp AGTTTCTCTCCGTTTTTGCCAATAACAAAGCGATGGTaGTCTTTAGGAATGGGAACAGTTGCTGAGGCCTGT +
Preference number: 6 (lower is better)
Translates to: SFSPFLPITKRW*SLGMGTVAEAC
Trigger: ACAGGCCTCAGCAACTGTTCCCATTCCTAAAGAGCACCATCGCTTTGTTATTGGCAAAAACGGAGAGAAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
ENSMUST00000188988.7
CDS CAA 72 bp GAGTTGCTGTTCTCTGCAGGAAGGTCAATCTTGGTGTaGCTCTCTTCACGGATCTTTTTAATGTTTGCGCCT +
Preference number: 6 (lower is better)
Translates to: ELLFSAGRSILV*LSSRIFLMFAP
Trigger: AGGCGCAAACATTAAAAAGATCCGTGAAGAGAGCAACACCAAGATTGACCTTCCTGCAGAGAACAGCAACTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 90 bp CTCCACCTCATTCTTGGGGCCTCTGAGTTGTACAATATCACTTTTTaGTGCTGGGTCTGGAAAGTTGATGATAACCTCTGGGAATTTGTC +
Preference number: 6 (lower is better)
Translates to: LHLILGASELYNITF*CWVWKVDDNLWEFV
Trigger: GACAAATTCCCAGAGGTTATCATCAACTTTCCAGACCCAGCACAAAAAAGTGATATTGTACAACTCAGAGGCCCCAAGAATGAGGTGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS TCA 72 bp TCATCTCCATTCTCCTGGATGGAAGGCTCTACACTGTaGACTGGATTTTCCTCTCTATCTGGGAACTTGATT +
Preference number: 6 (lower is better)
Translates to: SSPFSWMEGSTL*TGFSSLSGNLI
Trigger: AATCAAGTTCCCAGATAGAGAGGAAAATCCAGTTCACAGTGTAGAGCCTTCCATCCAGGAGAATGGAGATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS GCA 72 bp GTTCACTTCATGTTCCAAGCGGATCTGGGTGATCACTaGTCCTTTTCTCCCGATAATTTTGGGATGGTATTT +
Preference number: 6 (lower is better)
Translates to: VHFMFQADLGDH*SFSPDNFGMVF
Trigger: AAATACCATCCCAAAATTATCGGGAGAAAAGGAGCAGTGATCACCCAGATCCGCTTGGAACATGAAGTGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CCA 72 bp TCCATTCTCCTGGATGGAAGGCTCTACACTGTGAACTaGATTTTCCTCTCTATCTGGGAACTTGATTTGAAC +
Preference number: 6 (lower is better)
Translates to: SILLDGRLYTVN*IFLSIWELDLN
Trigger: GTTCAAATCAAGTTCCCAGATAGAGAGGAAAATCCAGTTCACAGTGTAGAGCCTTCCATCCAGGAGAATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp ACCAGTCCTCTGCATGATCTCAAGGCAGATTTTTGCTaGTTCACCCTCTCCAAACTGGTTCATGTCCTTATA +
Preference number: 6 (lower is better)
Translates to: TSPLHDLKADFC*FTLSKLVHVLI
Trigger: TATAAGGACATGAACCAGTTTGGAGAGGGTGAACAAGCAAAAATCTGCCTTGAGATCATGCAGAGGACTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
ENSMUST00000186787.7
ENSMUST00000188988.7
ENSMUST00000189025.7
CDS CAA 72 bp AAACTCATCCATCATCTTGCGGATTCCACTTCCTTTTaGCCCAATGATGTAGCGGTGAAGATCAAAGGGTAC +
Preference number: 6 (lower is better)
Translates to: KLIHHLADSTSF*PNDVAVKIKGY
Trigger: GTACCCTTTGATCTTCACCGCTACATCATTGGGCAAAAAGGAAGTGGAATCCGCAAGATGATGGATGAGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS TCA 72 bp AACAGAAACTCCAGTTCTTTCCAGGATTTCTTGCAGTaGATTGCCCTTTGGCCCAATAACATACTTGTGCTG +
Preference number: 6 (lower is better)
Translates to: NRNSSSFQDFLQ*IALWPNNILVL
Trigger: CAGCACAAGTATGTTATTGGGCCAAAGGGCAATTCACTGCAAGAAATCCTGGAAAGAACTGGAGTTTCTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
CDS GCA 72 bp CTTGGTGTTGCTCTCTTCACGGATCTTTTTAATGTTTaGGCCTCCTTTCCCGATGATATTCTTGTGAAACTG +
Preference number: 6 (lower is better)
Translates to: LGVALFTDLFNV*ASFPDDILVKL
Trigger: CAGTTTCACAAGAATATCATCGGGAAAGGAGGCGCAAACATTAAAAAGATCCGTGAAGAGAGCAACACCAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp ATTCTTGGGGCCTCTGAGTTGTACAATATCACTTTTTaGTGCTGGGTCTGGAAAGTTGATGATAACCTCTGG +
Preference number: 6 (lower is better)
Translates to: ILGASELYNITF*CWVWKVDDNLW
Trigger: CCAGAGGTTATCATCAACTTTCCAGACCCAGCACAAAAAAGTGATATTGTACAACTCAGAGGCCCCAAGAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7
CDS CAA 72 bp GTCTCAGAGTTGCTGTTCTCTGCAGGAAGGTCAATCTaGGTGTTGCTCTCTTCACGGATCTTTTTAATGTTT +
Preference number: 6 (lower is better)
Translates to: VSELLFSAGRSI*VLLSSRIFLMF
Trigger: AAACATTAAAAAGATCCGTGAAGAGAGCAACACCAAGATTGACCTTCCTGCAGAGAACAGCAACTCTGAGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000042498.14
ENSMUST00000170883.8
ENSMUST00000186164.7