Pregenerated sensors for HDHD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038422Ensembl transcript IDs: ENSMUST00000037820.3
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGGCTGCAGCAGGAGAGCCGAGACACCTCCCTCTGCAGGAGAGGTaGGAGAGAAGGGACTCCCTGCCTCCAGTGTTTATTTGGTCCCAG | + |
|
Preference number: 1 (lower is better) Translates to: EAAAGEPRHLPLQER*ERRDSLPPVFIWSQ Trigger: CTGGGACCAAATAAACACTGGAGGCAGGGAGTCCCTTCTCTCTCACCTCTCCTGCAGAGGGAGGTGTCTCGGCTCTCCTGCTGCAGCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| 3UTR GCA 90 bp | CTGCCAAGCCCTCGCAGTTCTATGCTCAGATTAAATTATGGAGGCTaGAGCAGGAGAGCCGAGACACCTCCCTCTGCAGGAGAGGTGAGA | + |
|
Preference number: 1 (lower is better) Translates to: LPSPRSSMLRLNYGG*SRRAETPPSAGEVR Trigger: TCTCACCTCTCCTGCAGAGGGAGGTGTCTCGGCTCTCCTGCTGCAGCCTCCATAATTTAATCTGAGCATAGAACTGCGAGGGCTTGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| 3UTR CCA 90 bp | CAGGCTACTGCCAAGCCCTCGCAGTTCTATGCTCAGATTAAATTATaGAGGCTGCAGCAGGAGAGCCGAGACACCTCCCTCTGCAGGAGA | + |
|
Preference number: 1 (lower is better) Translates to: QATAKPSQFYAQIKL*RLQQESRDTSLCRR Trigger: TCTCCTGCAGAGGGAGGTGTCTCGGCTCTCCTGCTGCAGCCTCCATAATTTAATCTGAGCATAGAACTGCGAGGGCTTGGCAGTAGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| 3UTR-3UTR GCA 90 bp | CCAAGCCCTCGCAGTTCTATGCTCAGATTAAATTATGGAGGCTGCAGCAGGAGACGAGACACCTCCCTCTaGAGGAGAGGTGAGAGAGAA | + |
|
Preference number: 2 (lower is better) Translates to: PSPRSSMLRLNYGGCSRRRDTSL*RRGERE Trigger: TTCTCTCTCACCTCTCCTGCAGAGGGAGGTGTCTCG...TCTCCTGCTGCAGCCTCCATAATTTAATCTGAGCATAGAACTGCGAGGGCTTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| 3UTR-3UTR CCA 90 bp | GAGACCAGGCTACTGCCAAGCCCTCGCAGTTCTATGCTCAGATTAAATTATGGACCTCCAGTGTTTATTTaGTCCCAGCTACTTCCCTCA | + |
|
Preference number: 2 (lower is better) Translates to: ETRLLPSPRSSMLRLNYGPPVFI*SQLLPS Trigger: TGAGGGAAGTAGCTGGGACCAAATAAACACTGGAGG...TCCATAATTTAATCTGAGCATAGAACTGCGAGGGCTTGGCAGTAGCCTGGTCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| 3UTR TCA 72 bp | GCAGGAGAGCCGAGACACCTCCCTCTGCAGGAGAGGTaGGAGAGAAGGGACTCCCTGCCTCCAGTGTTTATT | + |
|
Preference number: 3 (lower is better) Translates to: AGEPRHLPLQER*ERRDSLPPVFI Trigger: AATAAACACTGGAGGCAGGGAGTCCCTTCTCTCTCACCTCTCCTGCAGAGGGAGGTGTCTCGGCTCTCCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| 3UTR GCA 72 bp | TCCCTCTGCAGGAGAGGTGAGAGAGAAGGGACTCCCTaGCTCCAGTGTTTATTTGGTCCCAGCTACTTCCCT | + |
|
Preference number: 3 (lower is better) Translates to: SLCRRGEREGTP*LQCLFGPSYFP Trigger: AGGGAAGTAGCTGGGACCAAATAAACACTGGAGGCAGGGAGTCCCTTCTCTCTCACCTCTCCTGCAGAGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| 3UTR CCA 72 bp | GCCAAGCCCTCGCAGTTCTATGCTCAGATTAAATTATaGAGGCTGCAGCAGGAGAGCCGAGACACCTCCCTC | + |
|
Preference number: 3 (lower is better) Translates to: AKPSQFYAQIKL*RLQQESRDTSL Trigger: GAGGGAGGTGTCTCGGCTCTCCTGCTGCAGCCTCCATAATTTAATCTGAGCATAGAACTGCGAGGGCTTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| 3UTR GCA 72 bp | CCTCGCAGTTCTATGCTCAGATTAAATTATGGAGGCTaGAGCAGGAGAGCCGAGACACCTCCCTCTGCAGGA | + |
|
Preference number: 3 (lower is better) Translates to: PRSSMLRLNYGG*SRRAETPPSAG Trigger: TCCTGCAGAGGGAGGTGTCTCGGCTCTCCTGCTGCAGCCTCCATAATTTAATCTGAGCATAGAACTGCGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS-3UTR CCA 90 bp | GCCGAGACACCTCCCTCTGCAGGAGAGGTGAGAGAGAAGGGACTCCCTGCCTCCGGGCCCGGGCCTTGCTaGCATATTCCTCCCCGACGG | + |
|
Preference number: 4 (lower is better) Translates to: AETPPSAGEVREKGLPASGPGPC*HIPPRR Trigger: CCGTCGGGGAGGAATATGCCAGCAAGGCCCGGGCCC...GGAGGCAGGGAGTCCCTTCTCTCTCACCTCTCCTGCAGAGGGAGGTGTCTCGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS-3UTR CCA 90 bp | TGCAGCAGGAGAGCCGAGACACCTCCCTCTGCAGGAGAGGTGAGAGAGAAGGGATCCACCACCACTCCATaGGCCCGGGCCTTGCTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: CSRRAETPPSAGEVREKGSTTTP*ARALLA Trigger: TGCCAGCAAGGCCCGGGCCCATGGAGTGGTGGTGGA...TCCCTTCTCTCTCACCTCTCCTGCAGAGGGAGGTGTCTCGGCTCTCCTGCTGCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS-3UTR TCA 90 bp | TGCAGCAGGAGAGCCGAGACACCTCCCTCTGCAGGAGAGGTGAGAGAGAAGGGAGGGAAGTTGTGGCTCTaGGCCCGGTATGCCTGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: CSRRAETPPSAGEVREKGGKLWL*ARYACL Trigger: CAGGCAGGCATACCGGGCTCAGAGCCACAACTTCCC...TCCCTTCTCTCTCACCTCTCCTGCAGAGGGAGGTGTCTCGGCTCTCCTGCTGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS-3UTR GCA 90 bp | TGCAGCAGGAGAGCCGAGACACCTCCCTCTGCAGGAGAGGTGAGAGAGAAGGGACATGGGCCCGGGCCTTaGTGGCATATTCCTCCCCGA | + |
|
Preference number: 4 (lower is better) Translates to: CSRRAETPPSAGEVREKGHGPGP*WHIPPR Trigger: TCGGGGAGGAATATGCCAGCAAGGCCCGGGCCCATG...TCCCTTCTCTCTCACCTCTCCTGCAGAGGGAGGTGTCTCGGCTCTCCTGCTGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS-3UTR TCA 90 bp | AGGAGAGCCGAGACACCTCCCTCTGCAGGAGAGGTGAGAGAGAAGGGACTCCCTAGAGTCCAGAGGCTCTaGGCCCGCTACCAGGAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: RRAETPPSAGEVREKGLPRVQRL*ARYQEA Trigger: AGCTTCCTGGTAGCGGGCTCAGAGCCTCTGGACTCT...AGGGAGTCCCTTCTCTCTCACCTCTCCTGCAGAGGGAGGTGTCTCGGCTCTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS-3UTR CCA 90 bp | TGCAGGAGAGGTGAGAGAGAAGGGACTCCCTGCCTCCAGTGTTTATTTGGTCCCACTGGAGTCATGGCCTaGGCATCTGGGACCCCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: CRRGEREGTPCLQCLFGPTGVMA*ASGTPA Trigger: AGCAGGGGTCCCAGATGCCCAGGCCATGACTCCAGT...GGGACCAAATAAACACTGGAGGCAGGGAGTCCCTTCTCTCTCACCTCTCCTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS-3UTR GCA 90 bp | AGCCCTCGCAGTTCTATGCTCAGATTAAATTATGGAGGCTGCAGCAGGAGAGCCCCAGGAAGCTGTGCATaGCCACAGCCTGAGACCCCT | + |
|
Preference number: 4 (lower is better) Translates to: SPRSSMLRLNYGGCSRRAPGSCA*PQPETP Trigger: AGGGGTCTCAGGCTGTGGGCATGCACAGCTTCCTGG...GGCTCTCCTGCTGCAGCCTCCATAATTTAATCTGAGCATAGAACTGCGAGGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS-3UTR CCA 90 bp | ACCAGGCTACTGCCAAGCCCTCGCAGTTCTATGCTCAGATTAAATTATGGAGGCCAGCAACTGGAGTCATaGCCTGGGCATCTGGGACCC | + |
|
Preference number: 4 (lower is better) Translates to: TRLLPSPRSSMLRLNYGGQQLES*PGHLGP Trigger: GGGTCCCAGATGCCCAGGCCATGACTCCAGTTGCTG...GCCTCCATAATTTAATCTGAGCATAGAACTGCGAGGGCTTGGCAGTAGCCTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS-3UTR GCA 90 bp | ACCAGGCTACTGCCAAGCCCTCGCAGTTCTATGCTCAGATTAAATTATGGAGGCGCTCTGAGCCCGGTATaGCTGCCTGAAGGCTTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: TRLLPSPRSSMLRLNYGGALSPV*LPEGLF Trigger: GAACAAGCCTTCAGGCAGGCATACCGGGCTCAGAGC...GCCTCCATAATTTAATCTGAGCATAGAACTGCGAGGGCTTGGCAGTAGCCTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS-3UTR TCA 90 bp | CTCAGAGACCAGGCTACTGCCAAGCCCTCGCAGTTCTATGCTCAGATTAAATTACCCGGTATGCCTGCCTaGAGGCTTGTTCCACGGTTA | + |
|
Preference number: 4 (lower is better) Translates to: LRDQATAKPSQFYAQIKLPGMPA*RLVPRL Trigger: TAACCGTGGAACAAGCCTTCAGGCAGGCATACCGGG...TAATTTAATCTGAGCATAGAACTGCGAGGGCTTGGCAGTAGCCTGGTCTCTGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS-3UTR CCA 90 bp | GCCAAGCCCTCGCAGTTCTATGCTCAGATTAAATTATGGAGGCTGCAGCAGGAGGTCGTCGGTCAAAGTTaGAGACCACTGCCAGCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: AKPSQFYAQIKLWRLQQEVVGQS*RPLPAS Trigger: TGAAGCTGGCAGTGGTCTCCAACTTTGACCGACGAC...CTCCTGCTGCAGCCTCCATAATTTAATCTGAGCATAGAACTGCGAGGGCTTGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS-3UTR GCA 90 bp | CAGTTCTATGCTCAGATTAAATTATGGAGGCTGCAGCAGGAGAGCCGAGACACCAAAGTTGGAGACCACTaGCAGCTTCAGACCCCGCTT | + |
|
Preference number: 4 (lower is better) Translates to: QFYAQIKLWRLQQESRDTKVGDH*QLQTPL Trigger: AAGCGGGGTCTGAAGCTGGCAGTGGTCTCCAACTTT...GGTGTCTCGGCTCTCCTGCTGCAGCCTCCATAATTTAATCTGAGCATAGAACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS CCA 90 bp | TGCCTGAAGGCTTGTTCCACGGTTATGTCTTCCACCACCACTCCATaGGCCCGGGCCTTGCTGGCATATTCCTCCCCGACGGGTCGGCGG | + |
|
Preference number: 5 (lower is better) Translates to: CLKACSTVMSSTTTP*ARALLAYSSPTGRR Trigger: CCGCCGACCCGTCGGGGAGGAATATGCCAGCAAGGCCCGGGCCCATGGAGTGGTGGTGGAAGACATAACCGTGGAACAAGCCTTCAGGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS TCA 90 bp | CCCGGGCCTTGCTGGCATATTCCTCCCCGACGGGTCGGCGGAGCTTaGTCAGAGTATCCTTTACATCCCACGTCAGCAGACGCATCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: PGPCWHIPPRRVGGA*SEYPLHPTSADASA Trigger: TGCAGATGCGTCTGCTGACGTGGGATGTAAAGGATACTCTGATCAAGCTCCGCCGACCCGTCGGGGAGGAATATGCCAGCAAGGCCCGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS GCA 90 bp | CGCTTACGGCACCCCTTCAGGGTCATCTCAGCCCCCTCCAACACCTaGCAGGTGAAAGGGCTGCTGAAGTCTTCGTATAGCTGGTCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: RLRHPFRVISAPSNT*QVKGLLKSSYSWSA Trigger: TGCTGACCAGCTATACGAAGACTTCAGCAGCCCTTTCACCTGGCAGGTGTTGGAGGGGGCTGAGATGACCCTGAAGGGGTGCCGTAAGCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS GCA 90 bp | CTGCAGAGTCCAGAGGCTCTGAGCCCGCTACCAGGAAGCTGTGCATaGCCACAGCCTGAGACCCCTGGTAATCACAGAGGTAACTATCCC | + |
|
Preference number: 5 (lower is better) Translates to: LQSPEALSPLPGSCA*PQPETPGNHRGNYP Trigger: GGGATAGTTACCTCTGTGATTACCAGGGGTCTCAGGCTGTGGGCATGCACAGCTTCCTGGTAGCGGGCTCAGAGCCTCTGGACTCTGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS CCA 90 bp | CTGCTGAAGTCTTCGTATAGCTGGTCAGCAACTGGAGTCATGGCCTaGGCATCTGGGACCCCTGCTAGGCGGAAGGTGTGTAGGACCACG | + |
|
Preference number: 5 (lower is better) Translates to: LLKSSYSWSATGVMA*ASGTPARRKVCRTT Trigger: CGTGGTCCTACACACCTTCCGCCTAGCAGGGGTCCCAGATGCCCAGGCCATGACTCCAGTTGCTGACCAGCTATACGAAGACTTCAGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS TCA 90 bp | GGCCATAGTTGGGGAAGTTGTGGCTCTGAGCCCGGTATGCCTGCCTaGAGGCTTGTTCCACGGTTATGTCTTCCACCACCACTCCATGGG | + |
|
Preference number: 5 (lower is better) Translates to: GHSWGSCGSEPGMPA*RLVPRLCLPPPLHG Trigger: CCCATGGAGTGGTGGTGGAAGACATAACCGTGGAACAAGCCTTCAGGCAGGCATACCGGGCTCAGAGCCACAACTTCCCCAACTATGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS CCA 90 bp | GCAGGCCAAGGCCTGTTAGGATATCCTCTAGTCGTCGGTCAAAGTTaGAGACCACTGCCAGCTTCAGACCCCGCTTACGGCACCCCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: AGQGLLGYPLVVGQS*RPLPASDPAYGTPS Trigger: TGAAGGGGTGCCGTAAGCGGGGTCTGAAGCTGGCAGTGGTCTCCAACTTTGACCGACGACTAGAGGATATCCTAACAGGCCTTGGCCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS-3UTR CAA 90 bp | TCGCAGTTCTATGCTCAGATTAAATTATGGAGGCTGCAGCAGGAGAGCCGAGACCCATGGGCCCGGGCCTaGCTGGCATATTCCTCCCCG | + |
|
Preference number: 5 (lower is better) Translates to: SQFYAQIKLWRLQQESRDPWARA*LAYSSP Trigger: CGGGGAGGAATATGCCAGCAAGGCCCGGGCCCATGG...GTCTCGGCTCTCCTGCTGCAGCCTCCATAATTTAATCTGAGCATAGAACTGCGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS-3UTR CAA 90 bp | GCCAAGCCCTCGCAGTTCTATGCTCAGATTAAATTATGGAGGCTGCAGCAGGAGAGTCGTCGGTCAAAGTaGGAGACCACTGCCAGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: AKPSQFYAQIKLWRLQQESRRSK*ETTASF Trigger: GAAGCTGGCAGTGGTCTCCAACTTTGACCGACGACT...CTCCTGCTGCAGCCTCCATAATTTAATCTGAGCATAGAACTGCGAGGGCTTGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS CAA 72 bp | GTTATGTCTTCCACCACCACTCCATGGGCCCGGGCCTaGCTGGCATATTCCTCCCCGACGGGTCGGCGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: VMSSTTTPWARA*LAYSSPTGRRS Trigger: GCTCCGCCGACCCGTCGGGGAGGAATATGCCAGCAAGGCCCGGGCCCATGGAGTGGTGGTGGAAGACATAAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS GCA 72 bp | TTATGTCTTCCACCACCACTCCATGGGCCCGGGCCTTaGTGGCATATTCCTCCCCGACGGGTCGGCGGAGCT | + |
|
Preference number: 6 (lower is better) Translates to: LCLPPPLHGPGP*WHIPPRRVGGA Trigger: AGCTCCGCCGACCCGTCGGGGAGGAATATGCCAGCAAGGCCCGGGCCCATGGAGTGGTGGTGGAAGACATAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS CAA 90 bp | TGTTCCACGGTTATGTCTTCCACCACCACTCCATGGGCCCGGGCCTaGCTGGCATATTCCTCCCCGACGGGTCGGCGGAGCTTGATCAGA | + |
|
Preference number: 6 (lower is better) Translates to: CSTVMSSTTTPWARA*LAYSSPTGRRSLIR Trigger: TCTGATCAAGCTCCGCCGACCCGTCGGGGAGGAATATGCCAGCAAGGCCCGGGCCCATGGAGTGGTGGTGGAAGACATAACCGTGGAACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS CAA 90 bp | GTTGGGGAAGTTGTGGCTCTGAGCCCGGTATGCCTGCCTGAAGGCTaGTTCCACGGTTATGTCTTCCACCACCACTCCATGGGCCCGGGC | + |
|
Preference number: 6 (lower is better) Translates to: VGEVVALSPVCLPEG*FHGYVFHHHSMGPG Trigger: GCCCGGGCCCATGGAGTGGTGGTGGAAGACATAACCGTGGAACAAGCCTTCAGGCAGGCATACCGGGCTCAGAGCCACAACTTCCCCAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS CCA 72 bp | GCTTGTTCCACGGTTATGTCTTCCACCACCACTCCATaGGCCCGGGCCTTGCTGGCATATTCCTCCCCGACG | + |
|
Preference number: 6 (lower is better) Translates to: ACSTVMSSTTTP*ARALLAYSSPT Trigger: CGTCGGGGAGGAATATGCCAGCAAGGCCCGGGCCCATGGAGTGGTGGTGGAAGACATAACCGTGGAACAAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS CAA 90 bp | CGCAGGCCAAGGCCTGTTAGGATATCCTCTAGTCGTCGGTCAAAGTaGGAGACCACTGCCAGCTTCAGACCCCGCTTACGGCACCCCTTC | + |
|
Preference number: 6 (lower is better) Translates to: RRPRPVRISSSRRSK*ETTASFRPRLRHPF Trigger: GAAGGGGTGCCGTAAGCGGGGTCTGAAGCTGGCAGTGGTCTCCAACTTTGACCGACGACTAGAGGATATCCTAACAGGCCTTGGCCTGCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS GCA 72 bp | CACCCCTTCAGGGTCATCTCAGCCCCCTCCAACACCTaGCAGGTGAAAGGGCTGCTGAAGTCTTCGTATAGC | + |
|
Preference number: 6 (lower is better) Translates to: HPFRVISAPSNT*QVKGLLKSSYS Trigger: GCTATACGAAGACTTCAGCAGCCCTTTCACCTGGCAGGTGTTGGAGGGGGCTGAGATGACCCTGAAGGGGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS CCA 72 bp | TCTTCGTATAGCTGGTCAGCAACTGGAGTCATGGCCTaGGCATCTGGGACCCCTGCTAGGCGGAAGGTGTGT | + |
|
Preference number: 6 (lower is better) Translates to: SSYSWSATGVMA*ASGTPARRKVC Trigger: ACACACCTTCCGCCTAGCAGGGGTCCCAGATGCCCAGGCCATGACTCCAGTTGCTGACCAGCTATACGAAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS CCA 72 bp | TACACAAGCGCGCTGCAGAGCCTCACGGAAAATCCGTaGGTCGGGTTTAGGACAGCCCACAGCCTCAGAAGT | + |
|
Preference number: 6 (lower is better) Translates to: YTSALQSLTENP*VGFRTAHSLRS Trigger: ACTTCTGAGGCTGTGGGCTGTCCTAAACCCGACCCACGGATTTTCCGTGAGGCTCTGCAGCGCGCTTGTGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS TCA 72 bp | TGGGGAAGTTGTGGCTCTGAGCCCGGTATGCCTGCCTaGAGGCTTGTTCCACGGTTATGTCTTCCACCACCA | + |
|
Preference number: 6 (lower is better) Translates to: WGSCGSEPGMPA*RLVPRLCLPPP Trigger: TGGTGGTGGAAGACATAACCGTGGAACAAGCCTTCAGGCAGGCATACCGGGCTCAGAGCCACAACTTCCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS CCA 72 bp | TGCCAGGTGAAAGGGCTGCTGAAGTCTTCGTATAGCTaGTCAGCAACTGGAGTCATGGCCTGGGCATCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: CQVKGLLKSSYS*SATGVMAWASG Trigger: CCCAGATGCCCAGGCCATGACTCCAGTTGCTGACCAGCTATACGAAGACTTCAGCAGCCCTTTCACCTGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS CCA 72 bp | GGCCTGTTAGGATATCCTCTAGTCGTCGGTCAAAGTTaGAGACCACTGCCAGCTTCAGACCCCGCTTACGGC | + |
|
Preference number: 6 (lower is better) Translates to: GLLGYPLVVGQS*RPLPASDPAYG Trigger: GCCGTAAGCGGGGTCTGAAGCTGGCAGTGGTCTCCAACTTTGACCGACGACTAGAGGATATCCTAACAGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS CAA 72 bp | GTTGTGGCTCTGAGCCCGGTATGCCTGCCTGAAGGCTaGTTCCACGGTTATGTCTTCCACCACCACTCCATG | + |
|
Preference number: 6 (lower is better) Translates to: VVALSPVCLPEG*FHGYVFHHHSM Trigger: CATGGAGTGGTGGTGGAAGACATAACCGTGGAACAAGCCTTCAGGCAGGCATACCGGGCTCAGAGCCACAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS GCA 72 bp | GCCATAGTTGGGGAAGTTGTGGCTCTGAGCCCGGTATaGCTGCCTGAAGGCTTGTTCCACGGTTATGTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: AIVGEVVALSPV*LPEGLFHGYVF Trigger: GAAGACATAACCGTGGAACAAGCCTTCAGGCAGGCATACCGGGCTCAGAGCCACAACTTCCCCAACTATGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||
| CDS CAA 72 bp | AGGCCTGTTAGGATATCCTCTAGTCGTCGGTCAAAGTaGGAGACCACTGCCAGCTTCAGACCCCGCTTACGG | + |
|
Preference number: 6 (lower is better) Translates to: RPVRISSSRRSK*ETTASFRPRLR Trigger: CCGTAAGCGGGGTCTGAAGCTGGCAGTGGTCTCCAACTTTGACCGACGACTAGAGGATATCCTAACAGGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037820.3 |
||