Pregenerated sensors for HDGFL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045835Ensembl transcript IDs: ENSMUST00000055915.6
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGTAGAAGGCGAATGAATGAAGGAGAGGTGGACTGGGTTGAAGACTaGGCCCTAGTGGGTTTCCCAAGCCACAGCCAGGTGGCAGCAGGA | + |
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Preference number: 1 (lower is better) Translates to: CRRRMNEGEVDWVED*ALVGFPSHSQVAAG Trigger: TCCTGCTGCCACCTGGCTGTGGCTTGGGAAACCCACTAGGGCCCAGTCTTCAACCCAGTCCACCTCTCCTTCATTCATTCGCCTTCTACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR CCA 90 bp | GGTGGGAAGGGTGGTCACTACTTAAGCCACAAAGTTGATGTCAACTaGCCTGTCCCCTCATGCCAGGAATTTAGGCTTGTAGAAGGCGAA | + |
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Preference number: 1 (lower is better) Translates to: GGKGGHYLSHKVDVN*PVPSCQEFRLVEGE Trigger: TTCGCCTTCTACAAGCCTAAATTCCTGGCATGAGGGGACAGGCCAGTTGACATCAACTTTGTGGCTTAAGTAGTGACCACCCTTCCCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR-3UTR CCA 90 bp | TGGCCCAAGAGATGTGGAGAGGATGTCTCACCTCTTCAACCCAAAAGGGCAAAGCAAGCCACAGCCAGGTaGCAGCAGGAACGGGTAAAA | + |
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Preference number: 2 (lower is better) Translates to: WPKRCGEDVSPLQPKRAKQATAR*QQERVK Trigger: TTTTACCCGTTCCTGCTGCCACCTGGCTGTGGCTTG...CTTTGCCCTTTTGGGTTGAAGAGGTGAGACATCCTCTCCACATCTCTTGGGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR-3UTR CCA 90 bp | TCCTTCAGTGGCCCAAGAGATGTGGAGAGGATGTCTCACCTCTTCAACCCAAAAGAAGGAGAGGTGGACTaGGTTGAAGACTGGGCCCTA | + |
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Preference number: 2 (lower is better) Translates to: SFSGPRDVERMSHLFNPKEGEVD*VEDWAL Trigger: TAGGGCCCAGTCTTCAACCCAGTCCACCTCTCCTTC...TTTTGGGTTGAAGAGGTGAGACATCCTCTCCACATCTCTTGGGCCACTGAAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR-3UTR CCA 90 bp | CAGCACCTTAAGGAAAGCAAAGCCTTAACAACAAGCAGGTCATCAAACCCCAAGCACTCAGGGTGGGTGTaGAGTAGACTAGCATCGCCA | + |
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Preference number: 2 (lower is better) Translates to: QHLKESKALTTSRSSNPKHSGWV*SRLASP Trigger: TGGCGATGCTAGTCTACTCCACACCCACCCTGAGTG...CTTGGGGTTTGATGACCTGCTTGTTGTTAAGGCTTTGCTTTCCTTAAGGTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR-3UTR TCA 90 bp | TCCTTCAGTGGCCCAAGAGATGTGGAGAGGATGTCTCACCTCTTCAACCCAAAAGAACCTACAGTACTCTaGAAGGAATTATGGGCGGCA | + |
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Preference number: 2 (lower is better) Translates to: SFSGPRDVERMSHLFNPKEPTVL*KELWAA Trigger: TGCCGCCCATAATTCCTTTCAGAGTACTGTAGGTTC...TTTTGGGTTGAAGAGGTGAGACATCCTCTCCACATCTCTTGGGCCACTGAAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR-3UTR TCA 90 bp | AATGCCCCTAAGAGTTTAGGGTGGGAAGGGTGGTCACTACTTAAGCCACAAAGTCTTGTAGAAGGCGAATaGATGAAGGAGAGGTGGACT | + |
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Preference number: 2 (lower is better) Translates to: NAPKSLGWEGWSLLKPQSLVEGE*MKERWT Trigger: AGTCCACCTCTCCTTCATTCATTCGCCTTCTACAAG...ACTTTGTGGCTTAAGTAGTGACCACCCTTCCCACCCTAAACTCTTAGGGGCATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR-3UTR CCA 90 bp | GATGTGGAGAGGATGTCTCACCTCTTCAACCCAAAAGGGCAAAGTCTTTCAGATAAAGTTGATGTCAACTaGCCTGTCCCCTCATGCCAG | + |
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Preference number: 2 (lower is better) Translates to: DVERMSHLFNPKGQSLSDKVDVN*PVPSCQ Trigger: CTGGCATGAGGGGACAGGCCAGTTGACATCAACTTT...ATCTGAAAGACTTTGCCCTTTTGGGTTGAAGAGGTGAGACATCCTCTCCACATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR-3UTR TCA 90 bp | CAACAAGCAGGTCATCAAACCCCAAGCAATAAGGGATATGAGATTGGCCACAGGGTCTTTCAGATCTTATaGCTTGAGAGCCCCAAAAGT | + |
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Preference number: 2 (lower is better) Translates to: QQAGHQTPSNKGYEIGHRVFQIL*LESPKS Trigger: ACTTTTGGGGCTCTCAAGTCATAAGATCTGAAAGAC...CCTGTGGCCAATCTCATATCCCTTATTGCTTGGGGTTTGATGACCTGCTTGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR CAA 90 bp | TCTAAAGTATTCTTATGTTTAAGTTATATATGTATGACTAAAGGCTaGGGGCTCCAGGGTGGATTCAAAGGAGCAGCTGAAGTTTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: SKVFLCLSYICMTKG*GLQGGFKGAAEVSF Trigger: GAAGGAAACTTCAGCTGCTCCTTTGAATCCACCCTGGAGCCCCAAGCCTTTAGTCATACATATATAACTTAAACATAAGAATACTTTAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR TCA 72 bp | AGGCTTGGGGCTCCAGGGTGGATTCAAAGGAGCAGCTaGAGTTTCCTTCAGTGGCCCAAGAGATGTGGAGAG | + |
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Preference number: 3 (lower is better) Translates to: RLGAPGWIQRSS*SFLQWPKRCGE Trigger: CTCTCCACATCTCTTGGGCCACTGAAGGAAACTTCAGCTGCTCCTTTGAATCCACCCTGGAGCCCCAAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR CCA 72 bp | AAAGAGCAGGGCCAAGAGGGTCCAGGTACAAAGGTGTaGAGAGACAGAAGAGGCTGGGAAGGGACACTTAAC | + |
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Preference number: 3 (lower is better) Translates to: KEQGQEGPGTKV*RDRRGWEGTLN Trigger: GTTAAGTGTCCCTTCCCAGCCTCTTCTGTCTCTCCACACCTTTGTACCTGGACCCTCTTGGCCCTGCTCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR CCA 72 bp | GAGCAGCTGAAGTTTCCTTCAGTGGCCCAAGAGATGTaGAGAGGATGTCTCACCTCTTCAACCCAAAAGGGC | + |
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Preference number: 3 (lower is better) Translates to: EQLKFPSVAQEM*RGCLTSSTQKG Trigger: GCCCTTTTGGGTTGAAGAGGTGAGACATCCTCTCCACATCTCTTGGGCCACTGAAGGAAACTTCAGCTGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR TCA 72 bp | CCCTCATGCCAGGAATTTAGGCTTGTAGAAGGCGAATaGATGAAGGAGAGGTGGACTGGGTTGAAGACTGGG | + |
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Preference number: 3 (lower is better) Translates to: PSCQEFRLVEGE*MKERWTGLKTG Trigger: CCCAGTCTTCAACCCAGTCCACCTCTCCTTCATTCATTCGCCTTCTACAAGCCTAAATTCCTGGCATGAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR-3UTR CAA 90 bp | CTTCAGTGGCCCAAGAGATGTGGAGAGGATGTCTCACCTCTTCAACCCAAAAGGGTTCCTTCCAGACCTTaGAATGTTGTCCCTGCTCTT | + |
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Preference number: 3 (lower is better) Translates to: LQWPKRCGEDVSPLQPKRVPSRP*NVVPAL Trigger: AAGAGCAGGGACAACATTCAAAGGTCTGGAAGGAAC...CCTTTTGGGTTGAAGAGGTGAGACATCCTCTCCACATCTCTTGGGCCACTGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR TCA 72 bp | TTTGCAGTAGGTGACAACACTGAGGGGCCCAGGTGCTaGCATGCAGATAGAAATTGCAGCACCTTAAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: FAVGDNTEGPRC*HADRNCSTLRK Trigger: TTTCCTTAAGGTGCTGCAATTTCTATCTGCATGTCAGCACCTGGGCCCCTCAGTGTTGTCACCTACTGCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR GCA 72 bp | ACAGACTGTTCCTTCCAGACCTTTGAATGTTGTCCCTaGTCTTCATCTTCCATCCCTCTTCACTCCTGGTTC | + |
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Preference number: 3 (lower is better) Translates to: TDCSFQTFECCP*SSSSIPLHSWF Trigger: GAACCAGGAGTGAAGAGGGATGGAAGATGAAGAGCAGGGACAACATTCAAAGGTCTGGAAGGAACAGTCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR CCA 72 bp | GGTGGTCACTACTTAAGCCACAAAGTTGATGTCAACTaGCCTGTCCCCTCATGCCAGGAATTTAGGCTTGTA | + |
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Preference number: 3 (lower is better) Translates to: GGHYLSHKVDVN*PVPSCQEFRLV Trigger: TACAAGCCTAAATTCCTGGCATGAGGGGACAGGCCAGTTGACATCAACTTTGTGGCTTAAGTAGTGACCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR TCA 72 bp | ATCGCCATAGTTTACAGACTGTTCCTTCCAGACCTTTaGATGTTGTCCCTGCTCTTCATCTTCCATCCCTCT | + |
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Preference number: 3 (lower is better) Translates to: IAIVYRLFLPDL*MLSLLFIFHPS Trigger: AGAGGGATGGAAGATGAAGAGCAGGGACAACATTCAAAGGTCTGGAAGGAACAGTCTGTAAACTATGGCGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR CCA 90 bp | GTTGAAGACTGGGCCCTAGTGGGTTTCCCAAGCCACAGCCAGGTGGCAGCAGGAGGAGGCAGCTGCTCCTaGGCTTGGTCAGGCTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: VEDWALVGFPSHSQVAAGGGSCS*AWSGSS Trigger: GGAGGAGCCTGACCAAGCCCAGGAGCAGCTGCCTCC...TCCTGCTGCCACCTGGCTGTGGCTTGGGAAACCCACTAGGGCCCAGTCTTCAAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR TCA 90 bp | AGGCGAATGAATGAAGGAGAGGTGGACTGGGTTGAAGACTGGGCCCTAGTGGGTGCTCTGATCCTCTTCTaGGCACAGGCTAGAGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: RRMNEGEVDWVEDWALVGALILF*AQARGG Trigger: GCCTCCTCTAGCCTGTGCTCAGAAGAGGATCAGAGC...ACCCACTAGGGCCCAGTCTTCAACCCAGTCCACCTCTCCTTCATTCATTCGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR GCA 90 bp | CTTCAGTGGCCCAAGAGATGTGGAGAGGATGTCTCACCTCTTCAACCCAAAAGGTCAACCATAGGGTCGTaGTCGATCTCCCACAGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LQWPKRCGEDVSPLQPKRSTIGS*SISHSP Trigger: GGGGCTGTGGGAGATCGAGCACGACCCTATGGTTGA...CCTTTTGGGTTGAAGAGGTGAGACATCCTCTCCACATCTCTTGGGCCACTGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR CCA 90 bp | TCCTTCAGTGGCCCAAGAGATGTGGAGAGGATGTCTCACCTCTTCAACCCAAAAAGCTGCTCCTGGGCTTaGTCAGGCTCCTCCACGAAG | + |
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Preference number: 4 (lower is better) Translates to: SFSGPRDVERMSHLFNPKSCSWA*SGSSTK Trigger: CTTCGTGGAGGAGCCTGACCAAGCCCAGGAGCAGCT...TTTTGGGTTGAAGAGGTGAGACATCCTCTCCACATCTCTTGGGCCACTGAAGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR CCA 90 bp | CTTCAGTGGCCCAAGAGATGTGGAGAGGATGTCTCACCTCTTCAACCCAAAAGGCCAACAATCAGGCCCTaGACCGCCTTTTCTGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: LQWPKRCGEDVSPLQPKRPTIRP*TAFSVA Trigger: GGCCACAGAAAAGGCGGTCCAGGGCCTGATTGTTGG...CCTTTTGGGTTGAAGAGGTGAGACATCCTCTCCACATCTCTTGGGCCACTGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR GCA 90 bp | AATGCCCCTAAGAGTTTAGGGTGGGAAGGGTGGTCACTACTTAAGCCACAAAGTTCGGGCTCCAGCTCCTaGACCAGCTCCTGTCCTAGT | + |
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Preference number: 4 (lower is better) Translates to: NAPKSLGWEGWSLLKPQSSGSSS*TSSCPS Trigger: ACTAGGACAGGAGCTGGTGCAGGAGCTGGAGCCCGA...ACTTTGTGGCTTAAGTAGTGACCACCCTTCCCACCCTAAACTCTTAGGGGCATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR GCA 90 bp | CAACAAGCAGGTCATCAAACCCCAAGCAATAAGGGATATGAGATTGGCCACAGGCTCAGCCTCAGCCTCTaGCTCCACCTCAGGGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: QQAGHQTPSNKGYEIGHRLSLSL*LHLRVL Trigger: AAGCACCCTGAGGTGGAGGCAGAGGCTGAGGCTGAG...CCTGTGGCCAATCTCATATCCCTTATTGCTTGGGGTTTGATGACCTGCTTGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR GCA 90 bp | AAGAAAGTGACTGGGACAACAAAAATCTTTACTGGACACTGCTGTCTCACTTTCCTCCGCCTCCGCCTCTaGCTCGGCCTCAGCCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: KKVTGTTKIFTGHCCLTFLRLRL*LGLSLS Trigger: GCTGAGGCTGAGGCCGAGGCAGAGGCGGAGGCGGAG...GAAAGTGAGACAGCAGTGTCCAGTAAAGATTTTTGTTGTCCCAGTCACTTTCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR CCA 90 bp | TGGCCCAAGAGATGTGGAGAGGATGTCTCACCTCTTCAACCCAAAAGGGCAAAGATGTTCGATCCTCGCTaGCCAGTGGGCATAGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: WPKRCGEDVSPLQPKRAKMFDPR*PVGIAL Trigger: AAGGGCTATGCCCACTGGCCAGCGAGGATCGAACAT...CTTTGCCCTTTTGGGTTGAAGAGGTGAGACATCCTCTCCACATCTCTTGGGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR GCA 90 bp | GAAAGTGACTGGGACAACAAAAATCTTTACTGGACACTGCTGTCTCACTTTCCCTCCAACGGAGGCAGCTaGTCCTGGGCTTGGTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: ESDWDNKNLYWTLLSHFPSNGGS*SWAWSG Trigger: GCCTGACCAAGCCCAGGAGCAGCTGCCTCCGTTGGA...GGGAAAGTGAGACAGCAGTGTCCAGTAAAGATTTTTGTTGTCCCAGTCACTTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR CCA 90 bp | CAACAAGCAGGTCATCAAACCCCAAGCAATAAGGGATATGAGATTGGCCACAGGAGCAGGGCGGTCTCATaGGTCCCGAAGAAGAACACC | + |
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Preference number: 4 (lower is better) Translates to: QQAGHQTPSNKGYEIGHRSRAVS*VPKKNT Trigger: GGTGTTCTTCTTCGGGACCCATGAGACCGCCCTGCT...CCTGTGGCCAATCTCATATCCCTTATTGCTTGGGGTTTGATGACCTGCTTGTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR TCA 90 bp | GATGTGGAGAGGATGTCTCACCTCTTCAACCCAAAAGGGCAAAGTCTTTCAGATCCTCCCTGGGCCGTTTaGGAGGACAATGAGGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: DVERMSHLFNPKGQSLSDPPWAV*EDNEAL Trigger: AAGAGCCTCATTGTCCTCTCAAACGGCCCAGGGAGG...ATCTGAAAGACTTTGCCCTTTTGGGTTGAAGAGGTGAGACATCCTCTCCACATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR GCA 90 bp | AATGCCCCTAAGAGTTTAGGGTGGGAAGGGTGGTCACTACTTAAGCCACAAAGTAGGCATCTCAGGTTCTaGCTCCAGCTCAGGCATGAA | + |
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Preference number: 4 (lower is better) Translates to: NAPKSLGWEGWSLLKPQSRHLRF*LQLRHE Trigger: TTCATGCCTGAGCTGGAGGCAGAACCTGAGATGCCT...ACTTTGTGGCTTAAGTAGTGACCACCCTTCCCACCCTAAACTCTTAGGGGCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR CCA 90 bp | AAGAAAGTGACTGGGACAACAAAAATCTTTACTGGACACTGCTGTCTCACTTTCAAGGGAACAGGTGCCTaGGACCCAGCAGGGCGGTCT | + |
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Preference number: 4 (lower is better) Translates to: KKVTGTTKIFTGHCCLTFKGTGA*DPAGRS Trigger: AGACCGCCCTGCTGGGTCCCAGGCACCTGTTCCCTT...GAAAGTGAGACAGCAGTGTCCAGTAAAGATTTTTGTTGTCCCAGTCACTTTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR CCA 90 bp | AAGAAAGTGACTGGGACAACAAAAATCTTTACTGGACACTGCTGTCTCACTTTCAGCCGCGCCTCTTGTTaGGCTTGCCGAACTTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: KKVTGTTKIFTGHCCLTFSRASC*ACRTSL Trigger: AAGAGAAGTTCGGCAAGCCCAACAAGAGGCGCGGCT...GAAAGTGAGACAGCAGTGTCCAGTAAAGATTTTTGTTGTCCCAGTCACTTTCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR CAA 72 bp | CATCGCCATAGTTTACAGACTGTTCCTTCCAGACCTTaGAATGTTGTCCCTGCTCTTCATCTTCCATCCCTC | + |
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Preference number: 4 (lower is better) Translates to: HRHSLQTVPSRP*NVVPALHLPSL Trigger: GAGGGATGGAAGATGAAGAGCAGGGACAACATTCAAAGGTCTGGAAGGAACAGTCTGTAAACTATGGCGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| 3UTR CAA 72 bp | CAGGTCATCAAACCCCAAGCAATAAGGGATATGAGATaGGCCACAGGAAAACTAGGAGTTGCAACCAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: QVIKPQAIRDMR*ATGKLGVATKV Trigger: AACTTTGGTTGCAACTCCTAGTTTTCCTGTGGCCAATCTCATATCCCTTATTGCTTGGGGTTTGATGACCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR CCA 90 bp | AAGAAAGTGACTGGGACAACAAAAATCTTTACTGGACACTGCTGTCTCACTTTCTGCCGAACTTCTCTTTaGACTCCTCATAAGGGAACA | + |
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Preference number: 4 (lower is better) Translates to: KKVTGTTKIFTGHCCLTFCRTSL*TPHKGT Trigger: TGTTCCCTTATGAGGAGTCCAAAGAGAAGTTCGGCA...GAAAGTGAGACAGCAGTGTCCAGTAAAGATTTTTGTTGTCCCAGTCACTTTCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS GCA 90 bp | CCCTGGACCGCCTTTTCTGTGGCCTCTTCCTCCAACGGAGGCAGCTaGTCCTGGGCTTGGTCAGGCTCCTCCACGAAGGGGCAGGCCTCA | + |
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Preference number: 5 (lower is better) Translates to: PWTAFSVASSSNGGS*SWAWSGSSTKGQAS Trigger: TGAGGCCTGCCCCTTCGTGGAGGAGCCTGACCAAGCCCAGGAGCAGCTGCCTCCGTTGGAGGAAGAGGCCACAGAAAAGGCGGTCCAGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS CCA 90 bp | ACCGCCTTTTCTGTGGCCTCTTCCTCCAACGGAGGCAGCTGCTCCTaGGCTTGGTCAGGCTCCTCCACGAAGGGGCAGGCCTCAGCCTCG | + |
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Preference number: 5 (lower is better) Translates to: TAFSVASSSNGGSCS*AWSGSSTKGQASAS Trigger: CGAGGCTGAGGCCTGCCCCTTCGTGGAGGAGCCTGACCAAGCCCAGGAGCAGCTGCCTCCGTTGGAGGAAGAGGCCACAGAAAAGGCGGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS CCA 90 bp | TTTTCTGTGGCCTCTTCCTCCAACGGAGGCAGCTGCTCCTGGGCTTaGTCAGGCTCCTCCACGAAGGGGCAGGCCTCAGCCTCGCGCTCT | + |
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Preference number: 5 (lower is better) Translates to: FSVASSSNGGSCSWA*SGSSTKGQASASRS Trigger: AGAGCGCGAGGCTGAGGCCTGCCCCTTCGTGGAGGAGCCTGACCAAGCCCAGGAGCAGCTGCCTCCGTTGGAGGAAGAGGCCACAGAAAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS GCA 90 bp | GGGCTCGGGCTCCTGTTCACACTCGGTCTCAGGCATCTCAGGTTCTaGCTCCAGCTCAGGCATGAATTCGGGCTCCAGCTCCTGCACCAG | + |
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Preference number: 5 (lower is better) Translates to: GLGLLFTLGLRHLRF*LQLRHEFGLQLLHQ Trigger: CTGGTGCAGGAGCTGGAGCCCGAATTCATGCCTGAGCTGGAGGCAGAACCTGAGATGCCTGAGACCGAGTGTGAACAGGAGCCCGAGCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS CCA 90 bp | GCAGGGCGGTCTCATGGGTCCCGAAGAAGAACACCTGGTAGCGGTTaGCTTCAGCGACATGTTCGATCCTCGCTGGCCAGTGGGCATAGC | + |
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Preference number: 5 (lower is better) Translates to: AGRSHGSRRRTPGSG*LQRHVRSSLASGHS Trigger: GCTATGCCCACTGGCCAGCGAGGATCGAACATGTCGCTGAAGCCAACCGCTACCAGGTGTTCTTCTTCGGGACCCATGAGACCGCCCTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS TCA 90 bp | CACACTCGGTCTCAGGCATCTCAGGTTCTGCCTCCAGCTCAGGCATaGATTCGGGCTCCAGCTCCTGCACCAGCTCCTGTCCTAGTTCCG | + |
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Preference number: 5 (lower is better) Translates to: HTRSQASQVLPPAQA*IRAPAPAPAPVLVP Trigger: CGGAACTAGGACAGGAGCTGGTGCAGGAGCTGGAGCCCGAATTCATGCCTGAGCTGGAGGCAGAACCTGAGATGCCTGAGACCGAGTGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR CAA 90 bp | AGGCGAATGAATGAAGGAGAGGTGGACTGGGTTGAAGACTGGGCCCTAGTGGGTAAGCCGCGCCTCTTGTaGGGCTTGCCGAACTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: RRMNEGEVDWVEDWALVGKPRLL*GLPNFS Trigger: AGAGAAGTTCGGCAAGCCCAACAAGAGGCGCGGCTT...ACCCACTAGGGCCCAGTCTTCAACCCAGTCCACCTCTCCTTCATTCATTCGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR CAA 90 bp | AGGCGAATGAATGAAGGAGAGGTGGACTGGGTTGAAGACTGGGCCCTAGTGGGTCTCAGGGTGCTTCTCTaGCACATGCTCGGCTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: RRMNEGEVDWVEDWALVGLRVLL*HMLGLL Trigger: CAGCAAGCCGAGCATGTGCAAGAGAAGCACCCTGAG...ACCCACTAGGGCCCAGTCTTCAACCCAGTCCACCTCTCCTTCATTCATTCGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR CAA 90 bp | GAAAGTGACTGGGACAACAAAAATCTTTACTGGACACTGCTGTCTCACTTTCCCTCTCCTGGCTCGGCCTaGGTGAGGCCCGGCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: ESDWDNKNLYWTLLSHFPSPGSA*VRPGSS Trigger: GGAGGAGCCGGGCCTCACCAAGGCCGAGCCAGGAGA...GGGAAAGTGAGACAGCAGTGTCCAGTAAAGATTTTTGTTGTCCCAGTCACTTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS-3UTR CAA 90 bp | CTCTTCATCTTCCATCCCTCTTCACTCCTGGTTCCTAGGCAGAGGTCCAAAATGCAGCTGCTCCTGGGCTaGGTCAGGCTCCTCCACGAA | + |
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Preference number: 5 (lower is better) Translates to: LFIFHPSSLLVPRQRSKMQLLLG*VRLLHE Trigger: TTCGTGGAGGAGCCTGACCAAGCCCAGGAGCAGCTG...CATTTTGGACCTCTGCCTAGGAACCAGGAGTGAAGAGGGATGGAAGATGAAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS CAA 90 bp | TCCTCCGCGCTCCTCTTCAGACTCCCCGGCTCCTCCACCTCAGCCTaGGCCTCCGCCTCCGCCTCTGCCTCGGCCTCAGCCTCAGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: SSALLFRLPGSSTSA*ASASASASASASAS Trigger: TGAGGCTGAGGCTGAGGCCGAGGCAGAGGCGGAGGCGGAGGCCAAGGCTGAGGTGGAGGAGCCGGGGAGTCTGAAGAGGAGCGCGGAGGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS TCA 72 bp | CATGCTCGGCTTGCTGATCTCCTGGCTCGGCCTTGGTaGGGCCCGGCTCCTCCACGGCGTCCAGCAGGTCAT | + |
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Preference number: 6 (lower is better) Translates to: HARLADLLARPW*GPAPPRRPAGH Trigger: ATGACCTGCTGGACGCCGTGGAGGAGCCGGGCCTCACCAAGGCCGAGCCAGGAGATCAGCAAGCCGAGCATG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS CCA 72 bp | TCTGTGGCCTCTTCCTCCAACGGAGGCAGCTGCTCCTaGGCTTGGTCAGGCTCCTCCACGAAGGGGCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: SVASSSNGGSCS*AWSGSSTKGQA Trigger: GGCCTGCCCCTTCGTGGAGGAGCCTGACCAAGCCCAGGAGCAGCTGCCTCCGTTGGAGGAAGAGGCCACAGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS GCA 72 bp | GCCTTTTCTGTGGCCTCTTCCTCCAACGGAGGCAGCTaGTCCTGGGCTTGGTCAGGCTCCTCCACGAAGGGG | + |
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Preference number: 6 (lower is better) Translates to: AFSVASSSNGGS*SWAWSGSSTKG Trigger: CCCCTTCGTGGAGGAGCCTGACCAAGCCCAGGAGCAGCTGCCTCCGTTGGAGGAAGAGGCCACAGAAAAGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS TCA 72 bp | TCTCAGGCATCTCAGGTTCTGCCTCCAGCTCAGGCATaGATTCGGGCTCCAGCTCCTGCACCAGCTCCTGTC | + |
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Preference number: 6 (lower is better) Translates to: SQASQVLPPAQA*IRAPAPAPAPV Trigger: GACAGGAGCTGGTGCAGGAGCTGGAGCCCGAATTCATGCCTGAGCTGGAGGCAGAACCTGAGATGCCTGAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS CCA 72 bp | TTTCTCCAACAATCAGGCCCTGGACCGCCTTTTCTGTaGCCTCTTCCTCCAACGGAGGCAGCTGCTCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: FLQQSGPGPPFL*PLPPTEAAAPG Trigger: CCCAGGAGCAGCTGCCTCCGTTGGAGGAAGAGGCCACAGAAAAGGCGGTCCAGGGCCTGATTGTTGGAGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS GCA 72 bp | CTCCTGTTCACACTCGGTCTCAGGCATCTCAGGTTCTaGCTCCAGCTCAGGCATGAATTCGGGCTCCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: LLFTLGLRHLRF*LQLRHEFGLQL Trigger: GAGCTGGAGCCCGAATTCATGCCTGAGCTGGAGGCAGAACCTGAGATGCCTGAGACCGAGTGTGAACAGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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| CDS CCA 72 bp | TCTCATGGGTCCCGAAGAAGAACACCTGGTAGCGGTTaGCTTCAGCGACATGTTCGATCCTCGCTGGCCAGT | + |
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Preference number: 6 (lower is better) Translates to: SHGSRRRTPGSG*LQRHVRSSLAS Trigger: ACTGGCCAGCGAGGATCGAACATGTCGCTGAAGCCAACCGCTACCAGGTGTTCTTCTTCGGGACCCATGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055915.6 |
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